Query psy3694
Match_columns 61
No_of_seqs 101 out of 199
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:12:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei3_A DNA damage-binding prot 99.7 8.6E-17 2.9E-21 125.8 6.4 59 1-60 395-453 (1158)
2 1ag7_A Conotoxin GS; neurotoxi 52.5 4.7 0.00016 19.6 0.7 9 1-9 1-9 (34)
3 1eyo_A Conotoxin TVIIA; cystin 39.2 9.8 0.00034 18.1 0.7 8 1-8 1-8 (30)
4 2fsd_A RBP, putative baseplate 32.5 66 0.0023 19.9 3.9 38 2-39 42-81 (142)
5 1spp_A Major seminal plasma gl 23.7 1E+02 0.0034 17.0 4.0 29 23-55 16-44 (109)
6 1d1n_A Initiation factor 2; be 23.3 49 0.0017 19.4 2.0 17 7-23 35-51 (99)
7 4db5_A Tumor necrosis factor l 23.2 17 0.00059 22.6 -0.0 18 2-19 26-43 (125)
8 1spp_B Major seminal plasma gl 22.8 1.1E+02 0.0037 17.0 4.1 29 23-55 19-47 (116)
9 2cio_B Inhibitor of cysteine p 19.6 1.4E+02 0.0047 17.5 3.6 25 18-42 17-43 (121)
10 3kl4_B DPAP B, YSCV, signal pe 19.6 43 0.0015 16.7 1.1 18 2-19 2-19 (42)
No 1
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=99.66 E-value=8.6e-17 Score=125.80 Aligned_cols=59 Identities=17% Similarity=0.310 Sum_probs=56.0
Q ss_pred CeeecCCCCeeeEEecCCcceEEEEecCCCCcceeEEeecCCCCCCccEEEEeECCCeee
Q psy3694 1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLFHQPSISPSMIE 60 (61)
Q Consensus 1 ~~~G~g~~ssLrvlr~Gi~v~el~ss~LP~~p~~vWT~k~~~~d~~d~ylvlSf~~~t~~ 60 (61)
+|||+|++|+||+|||||+++++++++||+. +++||+|...+|+||+|||+||.++|+-
T Consensus 395 ~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~gv-~~iWtl~~~~~~~~~~yLvlS~~~~T~V 453 (1158)
T 3ei3_A 395 TCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-KGLWPLRSDPNRETDDTLVLSFVGQTRV 453 (1158)
T ss_dssp EEECCGGGCEEEEEEESBCEEEEEEECCCSC-CEEEEECCCSSCSSCCEEEEEETTEEEE
T ss_pred EEECcCCCCeEEEEecCCCEEEEEeecCCCc-cEEEEEeecCCCCCCCEEEEECCCCeEE
Confidence 5999999999999999999999999999986 9999999887889999999999999974
No 2
>1ag7_A Conotoxin GS; neurotoxin, MU-conotoxin, sodium channel blocker, cystine knot motif; HET: HYP CGU; NMR {Conus geographus} SCOP: g.3.6.1
Probab=52.48 E-value=4.7 Score=19.60 Aligned_cols=9 Identities=44% Similarity=0.852 Sum_probs=6.5
Q ss_pred CeeecCCCC
Q psy3694 1 MACGRGPRS 9 (61)
Q Consensus 1 ~~~G~g~~s 9 (61)
+|+|+|+|-
T Consensus 1 acsgrgsrc 9 (34)
T 1ag7_A 1 ACSGRGSRC 9 (34)
T ss_dssp CCBCTTSCS
T ss_pred CCcCCCCCC
Confidence 578888763
No 3
>1eyo_A Conotoxin TVIIA; cystine knot motif; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1
Probab=39.22 E-value=9.8 Score=18.06 Aligned_cols=8 Identities=38% Similarity=0.655 Sum_probs=5.4
Q ss_pred CeeecCCC
Q psy3694 1 MACGRGPR 8 (61)
Q Consensus 1 ~~~G~g~~ 8 (61)
+|+|+++|
T Consensus 1 ~csgr~sr 8 (30)
T 1eyo_A 1 SCSGRDSR 8 (30)
T ss_dssp CCBCTTSS
T ss_pred CCcCCCCC
Confidence 46777765
No 4
>2fsd_A RBP, putative baseplate protein; lactococcus lactis, receptor binding protein, head domain, viral protein; 2.30A {Unidentified phage}
Probab=32.51 E-value=66 Score=19.95 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=29.8
Q ss_pred eeecCCCCeeeE-EecCCcceEEEEecCCCC-cceeEEee
Q psy3694 2 ACGRGPRSTVRV-LRHGLEVSEMAVSELPSN-PNAVWTVK 39 (61)
Q Consensus 2 ~~G~g~~ssLrv-lr~Gi~v~el~ss~LP~~-p~~vWT~k 39 (61)
++|.|..|.||- |.||+=.-.--+++.|.+ |.-+-++-
T Consensus 42 ASGVGssG~L~ARI~NGV~Y~~~~~i~iP~iAPN~~i~iG 81 (142)
T 2fsd_A 42 ASGVGSTGILQARIINGVIYVRGNSIPVPNVAPNFIVPVG 81 (142)
T ss_dssp CTTCCSSSEEEEEEETTEEEEEEEEEECCCBCTTCEEEEE
T ss_pred ccccCccceeeeeEeccEEEEecCCcccCccCCCceEEcc
Confidence 689999999985 778998888888889976 55555554
No 5
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=23.72 E-value=1e+02 Score=16.97 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=19.6
Q ss_pred EEEecCCCCcceeEEeecCCCCCCccEEEEeEC
Q psy3694 23 MAVSELPSNPNAVWTVKRRSDDRVSLFHQPSIS 55 (61)
Q Consensus 23 l~ss~LP~~p~~vWT~k~~~~d~~d~ylvlSf~ 55 (61)
.+++|-|.+..-.|+|+.+. ...|.|.|.
T Consensus 16 ~i~SPYp~~~~C~w~I~~~~----g~~I~l~f~ 44 (109)
T 1spp_A 16 TIFTYKGPKTECVWTLQVDP----KYKLLVSIP 44 (109)
T ss_dssp EEECCCSSCSEEEEEEECCT----TSEEEEEEE
T ss_pred EEeCCCCCCCcEEEEEEcCC----CCEEEEEEe
Confidence 45667777778899999753 345556553
No 6
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=23.26 E-value=49 Score=19.43 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=13.4
Q ss_pred CCCeeeEEecCCcceEE
Q psy3694 7 PRSTVRVLRHGLEVSEM 23 (61)
Q Consensus 7 ~~ssLrvlr~Gi~v~el 23 (61)
.++.+|+||+|+-+-|=
T Consensus 35 r~~~vRv~Rd~~vI~eG 51 (99)
T 1d1n_A 35 RDSKVRLIRQGIVVYEG 51 (99)
T ss_dssp SSSEEEEECSSSEEEEE
T ss_pred cCCeEEEEECCEEEEEe
Confidence 46789999999877653
No 7
>4db5_A Tumor necrosis factor ligand superfamily member 1; gitrl, glucocorticoid-induced TNF receptor ligand, immune SY tnfrsf18; HET: B3P; 1.52A {Oryctolagus cuniculus} PDB: 4e4s_A 2r30_A 3b93_A 3b94_A 2q1m_A
Probab=23.15 E-value=17 Score=22.55 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=13.6
Q ss_pred eeecCCCCeeeEEecCCc
Q psy3694 2 ACGRGPRSTVRVLRHGLE 19 (61)
Q Consensus 2 ~~G~g~~ssLrvlr~Gi~ 19 (61)
|--..+++.|+|+|+|+=
T Consensus 26 cv~~~~dgKL~Ilq~GlY 43 (125)
T 4db5_A 26 CVNKISDWKLKILQNGLY 43 (125)
T ss_dssp SEEEEETTEEEECSCEEE
T ss_pred ccccccCceEEEEeCcEE
Confidence 444567889999999973
No 8
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=22.78 E-value=1.1e+02 Score=16.99 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=19.8
Q ss_pred EEEecCCCCcceeEEeecCCCCCCccEEEEeEC
Q psy3694 23 MAVSELPSNPNAVWTVKRRSDDRVSLFHQPSIS 55 (61)
Q Consensus 23 l~ss~LP~~p~~vWT~k~~~~d~~d~ylvlSf~ 55 (61)
.+.+|-|.+..-.|+|+.+. ..-|.|.|.
T Consensus 19 ~i~SPYp~~~~C~w~I~~~~----g~~I~l~f~ 47 (116)
T 1spp_B 19 SISNTDRQKNLCTWTILMKP----DQKVRMAIP 47 (116)
T ss_dssp EEECCSSCCSEEEEEEECCT----TCEEEEEEE
T ss_pred EEeCCCcCCCCEEEEEEeCC----CCEEEEEEe
Confidence 35577787778999999763 344556554
No 9
>2cio_B Inhibitor of cysteine peptidase; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Trypanosoma brucei}
Probab=19.64 E-value=1.4e+02 Score=17.45 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=18.7
Q ss_pred CcceEEEEecCCCCcc--eeEEeecCC
Q psy3694 18 LEVSEMAVSELPSNPN--AVWTVKRRS 42 (61)
Q Consensus 18 i~v~el~ss~LP~~p~--~vWT~k~~~ 42 (61)
+.+-|.+.+.||.+|+ -.|.+....
T Consensus 17 l~~Ge~~~I~L~~NPtTGY~W~~~~~~ 43 (121)
T 2cio_B 17 MVIGETFTIELESNPTTGYTWLRSGLA 43 (121)
T ss_pred EcCCCEEEEEeCCCCCCCeEEEEecCc
Confidence 4455788999999983 579998743
No 10
>3kl4_B DPAP B, YSCV, signal peptide of yeast dipeptidyl aminopeptidase; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Saccharomyces cerevisiae}
Probab=19.63 E-value=43 Score=16.75 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=12.7
Q ss_pred eeecCCCCeeeEEecCCc
Q psy3694 2 ACGRGPRSTVRVLRHGLE 19 (61)
Q Consensus 2 ~~G~g~~ssLrvlr~Gi~ 19 (61)
-+|.|+.|--+.+|-||-
T Consensus 2 rsgsgsgsgsklirvgii 19 (42)
T 3kl4_B 2 RSGSGSGSGSKLIRVGII 19 (42)
T ss_pred CCCCCCCCccceEEeeee
Confidence 367777777778888763
Done!