RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3694
         (61 letters)



>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision
           repair, xeroderma pigmentosum, cytoplasm, DNA repair;
           HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A*
           3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A*
           3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A
           2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
          Length = 1158

 Score = 41.5 bits (96), Expect = 2e-06
 Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 1   MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
              G     ++R++R+G+ + E A  +LP     +W ++   +      
Sbjct: 395 TCSGAFKEGSLRIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDDT 442


>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics,
           PSI, protein structure initiative; 1.80A {Pyrococcus
           furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
          Length = 281

 Score = 25.7 bits (57), Expect = 0.81
 Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 11/53 (20%)

Query: 10  TVR-VLRHGLE----------VSEMAVSELPSNPNAVWTVKRRSDDRVSLFHQ 51
           TVR VL+H ++          V  ++   +  +   +  +     ++  L   
Sbjct: 89  TVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIG 141


>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism,
           homocysteinemia, zinc, thiol alkyl transfer; HET: CBH
           CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A*
           1umy_A
          Length = 406

 Score = 24.4 bits (53), Expect = 2.3
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 3   CGRGPRSTVRVLRHGLEVSEMAVSELP--SNPNAVWT 37
           C   P  +++ ++   E  E A  +    S P A  T
Sbjct: 217 CHFDPTISLKTVKLMKEGLEAAQLKAHLMSQPLAYHT 253


>2btv_A T2A, T2B, protein (VP3 core protein); virus/viral protein,
           icosahedral virus; 3.50A {Bluetongue virus} SCOP:
           e.28.1.1
          Length = 901

 Score = 23.6 bits (50), Expect = 5.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 26  SELPSNPNAVWTVKR 40
            +LP NP  VW V R
Sbjct: 269 LQLPVNPQVVWDVPR 283


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0441    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 872,285
Number of extensions: 35030
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 4
Length of query: 61
Length of database: 6,701,793
Length adjustment: 32
Effective length of query: 29
Effective length of database: 5,808,321
Effective search space: 168441309
Effective search space used: 168441309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)