RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3694
         (61 letters)



>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
           40051]}
          Length = 845

 Score = 24.4 bits (53), Expect = 1.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 27  ELPSNPNAVWTVKR 40
           +LP NP  VW V R
Sbjct: 214 QLPVNPQVVWDVPR 227


>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 198

 Score = 23.7 bits (51), Expect = 1.7
 Identities = 8/36 (22%), Positives = 14/36 (38%)

Query: 3  CGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTV 38
           G G  +   V R   E ++  + EL    + V+  
Sbjct: 57 RGLGAGADPEVGRKAAEDAKDEIEELLRGADMVFVT 92


>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 132

 Score = 22.4 bits (47), Expect = 5.3
 Identities = 8/24 (33%), Positives = 9/24 (37%)

Query: 28 LPSNPNAVWTVKRRSDDRVSLFHQ 51
          LPS    V  V+RR  D       
Sbjct: 39 LPSFHKRVSKVRRRYSDFEFFRKC 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 211,239
Number of extensions: 6587
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 3
Length of query: 61
Length of database: 2,407,596
Length adjustment: 31
Effective length of query: 30
Effective length of database: 1,981,966
Effective search space: 59458980
Effective search space used: 59458980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)