BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3697
         (117 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
          Complexed With Ppack
          Length = 98

 Score = 34.7 bits (78), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 10/68 (14%)

Query: 35 GQGVCIEGV----CTCDAMYTGEACDVPICPNNCSYSNGVCKH------EFHRCECMDKY 84
          G G CI+G+    C C + + G  C   +   NCS  NG C H       + RC C   Y
Sbjct: 17 GHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGY 76

Query: 85 KEMKQLFD 92
          K    L  
Sbjct: 77 KLGDDLLQ 84


>pdb|1AUT|L Chain L, Human Activated Protein C
          Length = 114

 Score = 34.3 bits (77), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 35 GQGVCIEGV----CTCDAMYTGEACDVPICPNNCSYSNGVCKH------EFHRCECMDKY 84
          G G CI G+    C C + + G  C   +   NCS  NG C H       + RC C   Y
Sbjct: 24 GHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGY 83

Query: 85 KEMKQLFD 92
          K    L  
Sbjct: 84 KLGDDLLQ 91


>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
           Receptors
          Length = 725

 Score = 32.3 bits (72), Expect = 0.069,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 35  GQGVCIEGVCTCDAMYTGEACDVP 58
           G G C++G C CD  + G  CD P
Sbjct: 543 GHGRCVQGSCVCDEQWGGLYCDEP 566



 Score = 28.1 bits (61), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 35  GQGVCIEGV-CTCDAMYTGEACDV 57
           G G CI G  C CD  Y+G  C +
Sbjct: 194 GHGSCINGTKCICDPGYSGPTCKI 217


>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
          Length = 725

 Score = 32.3 bits (72), Expect = 0.076,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 35  GQGVCIEGVCTCDAMYTGEACDVP 58
           G G C++G C CD  + G  CD P
Sbjct: 543 GHGRCVQGSCVCDEQWGGLYCDEP 566



 Score = 28.1 bits (61), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 35  GQGVCIEGV-CTCDAMYTGEACDV 57
           G G CI G  C CD  Y+G  C +
Sbjct: 194 GHGSCINGTKCICDPGYSGPTCKI 217


>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
           Of Human Wnt Inhibitory Factor 1 In Complex With
           1,2-Dipalmitoylphosphatidylcholine
          Length = 324

 Score = 29.6 bits (65), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 37  GVCI-EGVCTCDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCECMDKY 84
           G CI +  C C   Y G+ C  P+C   C  ++G C HE ++C+C + +
Sbjct: 255 GKCIGKSKCKCSKGYQGDLCSKPVCEPGCG-AHGTC-HEPNKCQCQEGW 301


>pdb|3FCS|B Chain B, Structure Of Complete Ectodomain Of Integrin Aiibb3
 pdb|3FCS|D Chain D, Structure Of Complete Ectodomain Of Integrin Aiibb3
          Length = 690

 Score = 29.6 bits (65), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 35  GQGVCIEGVCTCDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCEC 80
           G G C  G C CD+ +TG  C+     + C  SNG+      +CEC
Sbjct: 538 GHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC 583


>pdb|4G1M|B Chain B, Re-Refinement Of Alpha V Beta 3 Structure
          Length = 692

 Score = 29.3 bits (64), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 35  GQGVCIEGVCTCDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCEC 80
           G G C  G C CD+ +TG  C+     + C  SNG+      +CEC
Sbjct: 538 GHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC 583


>pdb|4G1E|B Chain B, Crystal Structure Of Integrin Alpha V Beta 3 With
           Coil-Coiled Tag
          Length = 738

 Score = 29.3 bits (64), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 35  GQGVCIEGVCTCDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCEC 80
           G G C  G C CD+ +TG  C+     + C  SNG+      +CEC
Sbjct: 538 GHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC 583


>pdb|3IJE|B Chain B, Crystal Structure Of The Complete Integrin Alhavbeta3
           Ectodomain Plus An Alpha/beta Transmembrane Fragment
          Length = 695

 Score = 29.3 bits (64), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 35  GQGVCIEGVCTCDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCEC 80
           G G C  G C CD+ +TG  C+     + C  SNG+      +CEC
Sbjct: 538 GHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC 583


>pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
           Alphavbeta3
 pdb|1L5G|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
           Avb3 In Complex With An Arg-Gly-Asp Ligand
 pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
           Alpha Vbeta3 Bound To Mn2+
 pdb|1U8C|B Chain B, A Novel Adaptation Of The Integrin Psi Domain Revealed
           From Its Crystal Structure
          Length = 692

 Score = 29.3 bits (64), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 35  GQGVCIEGVCTCDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCEC 80
           G G C  G C CD+ +TG  C+     + C  SNG+      +CEC
Sbjct: 538 GHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC 583


>pdb|2DDU|A Chain A, Crystal Structure Of The Third Repeat Domain Of Reelin
          Length = 387

 Score = 28.5 bits (62), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 11/18 (61%)

Query: 35  GQGVCIEGVCTCDAMYTG 52
           G G CI GVC CD  YT 
Sbjct: 200 GHGDCISGVCFCDLGYTA 217


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.467 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,927,004
Number of Sequences: 62578
Number of extensions: 96434
Number of successful extensions: 184
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 34
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)