RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3697
(117 letters)
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 29.6 bits (67), Expect = 0.40
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 45 TCDAMYTGEACDVPICPNNC 64
T DA+Y C+V I PN C
Sbjct: 299 TIDALYAFTDCEVSISPNAC 318
>gnl|CDD|217802 pfam03935, SKN1, Beta-glucan synthesis-associated protein (SKN1).
This family consists of the beta-glucan
synthesis-associated proteins KRE6 and SKN1.
Beta1,6-Glucan is a key component of the yeast cell
wall, interconnecting cell wall proteins,
beta1,3-glucan, and chitin. It has been postulated that
the synthesis of beta1,6-glucan begins in the
endoplasmic reticulum with the formation of
protein-bound primer structures and that these primer
structures are extended in the Golgi complex by two
putative glucosyltransferases that are functionally
redundant, Kre6 and Skn1. This is followed by maturation
steps at the cell surface and by coupling to other cell
wall macromolecules.
Length = 505
Score = 29.2 bits (66), Expect = 0.52
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 12/46 (26%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGVCTCD 47
Y+ ++CD I PN S ++ P + CTC
Sbjct: 242 YSYDSCDAGITPNQSSPDGISYLPGQRLPS------------CTCS 275
>gnl|CDD|200551 cd10925, CE4_u1, Putative catalytic domain of uncharacterized
bacterial proteins from the carbohydrate esterase 4
superfamily. This family corresponds to a group of
uncharacterized bacterial proteins with high sequence
similarity to the catalytic domain of the six-stranded
barrel rhizobial NodB-like proteins, which remove
N-linked or O-linked acetyl groups from cell wall
polysaccharides and belong to the larger carbohydrate
esterase 4 (CE4) superfamily.
Length = 216
Score = 27.3 bits (61), Expect = 2.0
Identities = 5/22 (22%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 78 CECMD--KYKEMKQLFDACDVS 97
MD K+ +M+ + D +
Sbjct: 10 TPYMDWSKWDKMEDILDKYGIK 31
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 27.2 bits (60), Expect = 2.3
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 47 DAMYTGEACDVPICPNNCSYSNGV 70
DA Y G AC ICP Y +GV
Sbjct: 275 DAAYAGSAC---ICPEYRHYIDGV 295
>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 374
Score = 26.9 bits (59), Expect = 2.5
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 18/59 (30%)
Query: 52 GEACDVPICPNNCSYSNGV----CKHEFHRCECMDKYKEMKQLFDACDVSKNAHSVACP 106
+ + IC +N ++ + C H FH C+DK+ +S CP
Sbjct: 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHV-GCVDKW-------------LLGYSNKCP 365
>gnl|CDD|218637 pfam05558, DREPP, DREPP plasma membrane polypeptide. This family
contains several plant plasma membrane proteins termed
DREPPs as they are developmentally regulated plasma
membrane polypeptides.
Length = 201
Score = 26.5 bits (58), Expect = 2.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 87 MKQLFDACDVSKNAHSVACPSFDE 110
+K+LF+ K A + AC SFDE
Sbjct: 12 IKKLFEKSGAKKAAAAEACKSFDE 35
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 26.7 bits (60), Expect = 2.9
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 17/46 (36%)
Query: 13 PNNCSYSSVNSCP-----------SSKSDKP------CSGQGVCIE 41
P C+Y + CP KP C G G+C++
Sbjct: 14 PKKCNYECIKYCPVVRTGEETIEIDEDDGKPVISEELCIGCGICVK 59
>gnl|CDD|239152 cd02751, MopB_DMSOR-like, The MopB_DMSOR-like CD contains
dimethylsulfoxide reductase (DMSOR), biotin sulfoxide
reductase (BSOR), trimethylamine N-oxide reductase
(TMAOR) and other related proteins. DMSOR catalyzes the
reduction of DMSO to dimethylsulfide, but its cellular
location and oligomerization state are
organism-dependent. For example, in Rhodobacter
sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa
monomeric soluble protein found in the periplasmic
space; in E. coli, it is membrane-bound and exists as a
heterotrimer. BSOR catalyzes the reduction of biotin
sulfixode to biotin, and is unique among Mo enzymes
because no additional auxiliary proteins or cofactors
are required. TMAOR is similar to DMSOR, but its only
natural substrate is TMAO. Also included in this group
is the pyrogallol-phloroglucinol transhydroxylase from
Pelobacter acidigallici. Members of the MopB_DMSOR-like
CD belong to the molybdopterin_binding (MopB)
superfamily of proteins.
Length = 609
Score = 26.8 bits (60), Expect = 3.0
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 87 MKQLFDACDVSKNAHSVACPSFDELEN 113
++ L++ PSF+E
Sbjct: 520 LEHLYEETRAKAAGPGPELPSFEEFWE 546
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI)
homolog [General function prediction only].
Length = 591
Score = 26.5 bits (59), Expect = 3.6
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 18/55 (32%)
Query: 13 PNNCSYSSVNSCPSSKSD-----------KP------CSGQGVCIEGVCTCDAMY 50
P C Y + CP ++ KP C G G+C++ C DA+
Sbjct: 15 PKKCGYECIKYCPVVRTGKETIEIDEDTGKPVISEELCIGCGICVKK-CPFDAIS 68
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.454
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,132,487
Number of extensions: 372400
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 39
Length of query: 117
Length of database: 10,937,602
Length adjustment: 80
Effective length of query: 37
Effective length of database: 7,389,282
Effective search space: 273403434
Effective search space used: 273403434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)