RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3697
(117 letters)
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 42.4 bits (99), Expect = 7e-06
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 22 NSCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCEC 80
+ + CSG G C G C CD+ +TG C+ + C SNG+ +CEC
Sbjct: 525 DFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC 583
Score = 37.8 bits (87), Expect = 3e-04
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACD 56
+ G C+ S + C + CS +G C+ G C C + G+
Sbjct: 466 WLGSQCECSEEDYRPS--QQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITG 518
Score = 35.4 bits (81), Expect = 0.002
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGVCTCDAM-YTGEACD-VPI 59
+TG C+ + C S + CSG+G C G C C G+ C+ P
Sbjct: 553 WTGYYCNCTTRTDTCM---------SSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPT 603
Query: 60 CPNNCSYSNGVC 71
CP+ C+ C
Sbjct: 604 CPDACT-FKKEC 614
Score = 29.7 bits (66), Expect = 0.19
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 3/64 (4%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACDVPICP 61
+ +C+ + S + +G G GVC C + G C+
Sbjct: 421 FKDSLIVQVTFDCDCAC---QAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEED 477
Query: 62 NNCS 65
S
Sbjct: 478 YRPS 481
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 41.2 bits (96), Expect = 2e-05
Identities = 18/79 (22%), Positives = 26/79 (32%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACDVPICP 61
+T + I C ++N + G+G+C G C C + G AC
Sbjct: 498 HTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTT 557
Query: 62 NNCSYSNGVCKHEFHRCEC 80
C V RC C
Sbjct: 558 EGCLNPRRVECSGRGRCRC 576
Score = 37.4 bits (86), Expect = 4e-04
Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 10/65 (15%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACD-VPIC 60
+ G AC C CSG+G C VC C + Y C P C
Sbjct: 546 FEGSACQCERTTEGCLNPRRV---------ECSGRGRCRCNVCECHSGYQLPLCQECPGC 596
Query: 61 PNNCS 65
P+ C
Sbjct: 597 PSPCG 601
Score = 37.0 bits (85), Expect = 6e-04
Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACDVPICP 61
Y G+ C+ + SC + CSG G C+ G C C I
Sbjct: 454 YIGKNCECQTQGRSSQELE-GSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKL---IYG 509
Query: 62 NNCSYSNGVC 71
C C
Sbjct: 510 QYCECDTINC 519
Score = 35.1 bits (80), Expect = 0.002
Identities = 14/74 (18%), Positives = 24/74 (32%)
Query: 7 CDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACDVPICPNNCSY 66
+ S+ C G+G G+C CD Y G+ C+ +
Sbjct: 411 FTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQE 470
Query: 67 SNGVCKHEFHRCEC 80
G C+ + + C
Sbjct: 471 LEGSCRKDNNSIIC 484
Score = 27.8 bits (61), Expect = 1.1
Identities = 7/66 (10%), Positives = 18/66 (27%)
Query: 7 CDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACDVPICPNNCSY 66
+ + S V ++ + C+ ++ D +C
Sbjct: 384 NVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFL 443
Query: 67 SNGVCK 72
G+C+
Sbjct: 444 ECGICR 449
Score = 27.4 bits (60), Expect = 1.1
Identities = 10/50 (20%), Positives = 13/50 (26%), Gaps = 1/50 (2%)
Query: 23 SCPSSKSDKPCSGQGVCIE-GVCTCDAMYTGEACDVPICPNNCSYSNGVC 71
+CP + C E C YT E D + C
Sbjct: 624 ACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESREC 673
Score = 25.4 bits (55), Expect = 6.1
Identities = 14/109 (12%), Positives = 22/109 (20%), Gaps = 4/109 (3%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGVCTCDAM----YTGEACDV 57
T C + + + Q I + D + C
Sbjct: 368 VTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRC 427
Query: 58 PICPNNCSYSNGVCKHEFHRCECMDKYKEMKQLFDACDVSKNAHSVACP 106
+ S +G E C C Y S +C
Sbjct: 428 RDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCR 476
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 40.6 bits (95), Expect = 3e-05
Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 18/99 (18%)
Query: 2 YTGEACDVPICPNNCSYSSV---------------NSCPSSKSDKPCSGQGVCIE-GVCT 45
+ C CP C C + C G+C+ G C
Sbjct: 141 IFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCI 200
Query: 46 CDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCECMDKY 84
C + G CD C C + G C + +C C
Sbjct: 201 CPPGFYGVNCDKANCSTTCF-NGGTCFYPG-KCICPPGL 237
Score = 39.8 bits (93), Expect = 5e-05
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 18/99 (18%)
Query: 2 YTGEACDVPICPNNCSYSSV---------------NSCPSSKSDKPCSGQGVCIE-GVCT 45
+ G C+ +C C + +C + C G C G C
Sbjct: 173 FHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCI 232
Query: 46 CDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCECMDKY 84
C GE C++ CP C + G C + +C+C Y
Sbjct: 233 CPPGLEGEQCEISKCPQPCR-NGGKCIGKS-KCKCSKGY 269
Score = 39.1 bits (91), Expect = 9e-05
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 18/95 (18%)
Query: 2 YTGEACDVPICPNNCSYSSV---------------NSCPSSKSDKPCSGQGVCI-EGVCT 45
+ G CD C C C SK +PC G CI + C
Sbjct: 205 FYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCK 264
Query: 46 CDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCEC 80
C Y G+ C P+C C ++G C +C+C
Sbjct: 265 CSKGYQGDLCSKPVCEPGCG-AHGTCHEPN-KCQC 297
Score = 32.5 bits (74), Expect = 0.017
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 16/80 (20%)
Query: 2 YTGEACDVPICPNNCSYSSV---------------NSCPSSKSDKPCSGQGVCIE-GVCT 45
GE C++ CP C + C + C G C E C
Sbjct: 237 LEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQ 296
Query: 46 CDAMYTGEACDVPICPNNCS 65
C + G C+ +
Sbjct: 297 CQEGWHGRHCNKRYEASLIG 316
Score = 31.4 bits (71), Expect = 0.047
Identities = 15/79 (18%), Positives = 20/79 (25%), Gaps = 4/79 (5%)
Query: 7 CDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACDVPICPNNCSY 66
V C + +G I T + C CP C
Sbjct: 100 ASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTIL--KTPQNAIFFKTCQQAECPGGCR- 156
Query: 67 SNGVCKHEFHRCECMDKYK 85
+ G C CEC D +
Sbjct: 157 NGGFCNERR-ICECPDGFH 174
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 40.4 bits (93), Expect = 4e-05
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 25 PSSKSDKPCSGQGVCIEGVCTCDAMYTGEACDVPICPNNCS----YSNGVCKHEFHRCEC 80
CSG G C++G C CD + G CD P ++ +
Sbjct: 533 IGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWLTVSG 592
Query: 81 MDK 83
Sbjct: 593 GKL 595
Score = 26.9 bits (58), Expect = 2.1
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 33 CSGQGVCIEG-VCTCDAMYTGEACDVP 58
C G G CI G C CD Y+G C +
Sbjct: 192 CYGHGSCINGTKCICDPGYSGPTCKIS 218
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 38.5 bits (88), Expect = 1e-04
Identities = 15/50 (30%), Positives = 17/50 (34%)
Query: 31 KPCSGQGVCIEGVCTCDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCEC 80
CSG G CI GVC CD YT N S + +
Sbjct: 196 SYCSGHGDCISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWY 245
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 36.5 bits (84), Expect = 7e-04
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 13 PNNCSYSSVNSCPSSKSDKPCSGQGVC-IEGVCTCDAMYTGEACDVPICPNNCSYSNGVC 71
P C + + + G C G C C + G+ C C C + GVC
Sbjct: 378 PEECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHG-GVC 436
Query: 72 KHEFHRCECMDKY 84
++C C Y
Sbjct: 437 V-RPNKCLCKKGY 448
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 34.4 bits (78), Expect = 0.004
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGVCTCD------AMYTGEAC 55
Y G+ C+ + SC + CSG G C+ G C C + G+ C
Sbjct: 215 YIGKNCECQTQGRSSQELE-GSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYC 273
Score = 32.9 bits (74), Expect = 0.013
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 22 NSCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCEC 80
S+ C G+G G+C CD Y G+ C+ + G C+ + + C
Sbjct: 187 RCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 245
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 33.9 bits (78), Expect = 0.006
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 15/78 (19%)
Query: 18 YSSVNSCPSSKSDKPCSGQGVCIEGV----CTCDAMYTGEACDVPICPNNCSYSNGVCKH 73
Y + C S PC G C + + CTC Y G C++ C+H
Sbjct: 2 YKGGSPCISQ----PCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKN-ECHPERTDGCQH 56
Query: 74 ------EFHRCECMDKYK 85
E + C C Y+
Sbjct: 57 FCLPGQESYTCSCAQGYR 74
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens}
PDB: 2kb9_A
Length = 169
Score = 33.1 bits (76), Expect = 0.010
Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 17/71 (23%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIE-GVCTCDAMYTGEACDVPIC 60
Y G C+ P + G C + G TC + G C+ IC
Sbjct: 25 YYGFGCNKFCRPRDD----------------FFGHYACDQNGNKTCMEGWMGPECNRAIC 68
Query: 61 PNNCSYSNGVC 71
CS +G C
Sbjct: 69 RQGCSPKHGSC 79
Score = 29.6 bits (67), Expect = 0.15
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 32 PCSGQGVCI-EGVCTCDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCECMDKYK 85
G TCD Y G C+ P + + + C CM+ +
Sbjct: 6 HHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNG-NKTCMEGWM 59
Score = 26.2 bits (58), Expect = 2.1
Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 20/80 (25%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIE-GVCTCDAMYTGEACDVPIC 60
+ G C+ IC C G C G C C + G CD C
Sbjct: 58 WMGPECNRAICRQGC----------------SPKHGSCKLPGDCRCQYGWQGLYCD--KC 99
Query: 61 PNNCSYSNGVCKHEFHRCEC 80
+ +G+C + C C
Sbjct: 100 IPHPGCVHGICNEPWQ-CLC 118
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 32.2 bits (72), Expect = 0.024
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 23 SCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACD 56
+ S + +G G GVC C + G C+
Sbjct: 439 AQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 31.5 bits (71), Expect = 0.044
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 24 CPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCEC 80
S+ C G+G G+C CD Y G+ C+ + G C+ + + C
Sbjct: 89 RDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 145
Score = 31.1 bits (70), Expect = 0.050
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEAC 55
Y G+ C+ + SC + CSG G C+ G C C
Sbjct: 115 YIGKNCECQTQGRSSQELE-GSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKL 167
Score = 29.6 bits (66), Expect = 0.17
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACDVP 58
+T + I C ++N + G+G+C G C C + G AC
Sbjct: 159 HTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQHH 215
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 30.5 bits (69), Expect = 0.060
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 14 NNCSYSSVNSCPSSKSDKPCSGQGVCIEGV----CTCDAMYTGEACDVPICPNNCSYSNG 69
+ C + +S C G G CI+G+ C C + + G C + NCS NG
Sbjct: 7 DQCLVLPLEHPCAS----LCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNG 62
Query: 70 VCKH 73
C H
Sbjct: 63 GCTH 66
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 29.5 bits (65), Expect = 0.16
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 12/75 (16%)
Query: 2 YTGEACDVPICPNNCSYSSV-----------NSCPSSKSDKPCSGQGVCIE-GVCTCDAM 49
G A S + +C ++ C G C E +C C
Sbjct: 113 QDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDG 172
Query: 50 YTGEACDVPICPNNC 64
+ G C+ ++
Sbjct: 173 FHGPHCEGTKHHHHH 187
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 29.5 bits (65), Expect = 0.22
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 23 SCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACD 56
S ++ GQG GVC+C G C+
Sbjct: 460 SDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCE 493
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.41
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 11/41 (26%)
Query: 81 MDKYKE---MKQLFDACDVSKNAHSVACPSFDELE----NP 114
MD YK + +++ D H F L+ NP
Sbjct: 1633 MDLYKTSKAAQDVWNRAD----NHFKDTYGFSILDIVINNP 1669
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus
phage HP1} SCOP: d.163.1.1
Length = 170
Score = 27.4 bits (62), Expect = 0.74
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 86 EMKQLFDACDVSKNAH 101
++ +L CD S+N
Sbjct: 11 DIYRLLAECDNSRNPD 26
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 27.8 bits (61), Expect = 0.92
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 22 NSCPSSKSDKPCSGQGVC-IEGVCTCDAMYTGEACDVP 58
++C SSK CSG GVC E C C+ + G C+
Sbjct: 445 STCLSSKEGTICSGNGVCSNELKCVCNRHWIGSDCNTY 482
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 27.3 bits (61), Expect = 1.1
Identities = 15/58 (25%), Positives = 17/58 (29%), Gaps = 16/58 (27%)
Query: 13 PNNCSYSSVNSCPSSKSDKPC------SGQGVCIEGVCTCDAMYTGEACDVPICPNNC 64
P C SCP K+ K C S E +C C IC C
Sbjct: 18 PKKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILC--------IGCG--ICVKKC 65
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 26.9 bits (60), Expect = 1.2
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 12/78 (15%)
Query: 16 CSYSSVNSCPSSKSDKPCSGQGVCIEGV----CTCDAMYTGEACDVPI--CPNNCSYSNG 69
Y + C + PC G+C + + C C + G+ C++ N
Sbjct: 43 KQYVDGDQCEPN----PCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQF 98
Query: 70 VCKHE--FHRCECMDKYK 85
C C Y+
Sbjct: 99 CKTGADSKVLCSCTTGYR 116
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 27.3 bits (61), Expect = 1.3
Identities = 3/25 (12%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 68 NGVCKHEFHRCECMDKYKEMKQLFD 92
G+ + + E + + ++ F
Sbjct: 259 LGL-RVDIRHGEALPTLRGLEGPFH 282
>3bvr_A NOTI restriction endonuclease; protein-DNA complex; HET: DNA;
2.50A {Nocardia otitidiscaviarum} PDB: 3bvq_A* 3c25_A*
Length = 383
Score = 27.4 bits (59), Expect = 1.4
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 17 SYSSVNSCPSSKSDKPCSGQGVCIE---GVCTCDAMYTGEACDVPICPN 62
+ + +CP + K V E GVC + E D +CPN
Sbjct: 35 NDQATGTCPFLTAAKLVETSCVKAETSRGVCVVNTAVDNERYDWLVCPN 83
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 26.3 bits (58), Expect = 2.2
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 26 SSKSDKPCSGQGVCIEGV----CTCDAMYTGEACDVPIC 60
+S CSG G C+E + C CD Y G C
Sbjct: 120 ASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQFVQV 158
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 26.7 bits (58), Expect = 2.4
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 7/63 (11%)
Query: 20 SVNSCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACDVPICPNNCSYSNGVC--KHEFHR 77
V S + D GE + +C N GVC +
Sbjct: 158 RVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLN-----GGVCSVVDDQAV 212
Query: 78 CEC 80
C+C
Sbjct: 213 CDC 215
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet
cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation,
beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga
maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Length = 348
Score = 26.4 bits (58), Expect = 2.6
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 5/21 (23%)
Query: 11 ICPNNCSYSSVNSCPSSKSDK 31
+C NC Y C + +K
Sbjct: 62 VCRKNCLY-----CGLRRDNK 77
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 26.4 bits (59), Expect = 2.6
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 82 DKYKEMKQLF-DACDVSKNAHSVACPSFDELENPIMS 117
+ ++ V A +V SF+EL++ + +
Sbjct: 195 NLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTN 231
>2xrc_A Human complement factor I; immune system, hydrolase,
conglutinogen activating factor, S protease, complement
system; HET: NAG; 2.69A {Homo sapiens}
Length = 565
Score = 26.4 bits (58), Expect = 2.7
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 39 CIEGVCTCDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCEC 80
CIEG C C Y +C N C+ + C
Sbjct: 36 CIEGTCVCKLPYQCPKNGTAVCATNRRSFPTYCQQKSLECLH 77
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 25.9 bits (57), Expect = 2.8
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 26 SSKSDKPCSGQGVCIEGV----CTCDAMYTGEAC 55
+S D CS QG C+E + C+C + G C
Sbjct: 120 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 26.2 bits (57), Expect = 3.3
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 13/89 (14%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIE--GVCTCDAMYTGEACDVPI 59
+ G C+ + + C + C C+ C+C + G C+
Sbjct: 224 FMGRTCEKACELHTFGRTCKERCSG---QEGCKSYVFCLPDPYGCSCATGWKGLQCNEAC 280
Query: 60 --------CPNNCSYSNGVCKHEFHRCEC 80
C CS +NG F C C
Sbjct: 281 HPGFYGPDCKLRCSCNNGEMCDRFQGCLC 309
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
2; protein-RNA complex, ligase-RNA complex; HET: GSU;
3.37A {Thermotoga maritima}
Length = 592
Score = 26.1 bits (58), Expect = 3.4
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 5/25 (20%)
Query: 85 KEMKQLFDACDVSKNAHSVACPSFD 109
+E Q FD D+S FD
Sbjct: 402 EEKLQSFDPKDISNKG-----VIFD 421
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 25.4 bits (56), Expect = 3.7
Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 20/69 (28%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGV----CTCDAMYTGEACDV 57
+ G C I N C PC G+C + V C C + G C
Sbjct: 88 FNGIHCQHNI----------NECEVE----PCKNGGICTDLVANYSCECPGEFMGRNCQY 133
Query: 58 PI--CPNNC 64
++
Sbjct: 134 KGGGHHHHH 142
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 25.5 bits (56), Expect = 4.4
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 26 SSKSDKPCSGQGVCIEGV----CTCDAMYTGEACD 56
++ ++ CSG G C+E + C CD ++G C+
Sbjct: 120 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 25.7 bits (57), Expect = 4.7
Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 82 DKYKEMKQLF-DACDVSKNAHSVACPSFDELENPIMS 117
+ M + F + D ++ +F+ELE+ +++
Sbjct: 207 NPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVIN 243
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 25.0 bits (54), Expect = 6.3
Identities = 15/64 (23%), Positives = 23/64 (35%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACDVPICP 61
Y G+ C C + S + +++ CS G C G C A G C I
Sbjct: 30 YCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKC 89
Query: 62 NNCS 65
+ +
Sbjct: 90 GSQA 93
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 25.3 bits (54), Expect = 7.1
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 17 SYSSVNSCPS----SKSDKPCSGQGVCIEGVCTCDAMYTGEACDVPICPNNCSYSNGVCK 72
+ S+ C + SK +PC G + C C +C + +
Sbjct: 47 NNGSLVWCQNHKQCSKCLEPCKESGDLRKHQC-QSFCEPLFPKKSYECLTSCEFLKYILL 105
Query: 73 HEFHRCECMDK 83
+ C +K
Sbjct: 106 VKQGDCPAPEK 116
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM;
2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 25.0 bits (54), Expect = 7.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 10/44 (22%)
Query: 21 VNSCPSSKSDKPCSGQGVCIE-GV----CTCDAM-YTGEACDVP 58
VN C PC QG+C+ G+ C C Y+G C +P
Sbjct: 2 VNPCCYY----PCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIP 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.454
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,729,681
Number of extensions: 92375
Number of successful extensions: 816
Number of sequences better than 10.0: 1
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 326
Length of query: 117
Length of database: 6,701,793
Length adjustment: 80
Effective length of query: 37
Effective length of database: 4,468,113
Effective search space: 165320181
Effective search space used: 165320181
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)