RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3697
         (117 letters)



>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 41

 Score = 26.3 bits (58), Expect = 0.21
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 33 CSGQGVCIEGVCTCDAMYTGEAC 55
            G+G+C  G C C   + G AC
Sbjct: 17 GPGRGLCFCGKCRCHPGFEGSAC 39


>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 31

 Score = 22.5 bits (48), Expect = 3.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 33 CSGQGVCIEGVCTCDAMYTGEACD 56
          CSG G C  G C CD+ +TG  C+
Sbjct: 5  CSGHGQCSCGDCLCDSDWTGYYCN 28


>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 500

 Score = 24.2 bits (52), Expect = 4.9
 Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 59  ICPNNCSYSNGVCKHEFHRCECMDKYKE---MKQLFDACDV 96
           + P +C  +    K    R E +  + E    K+   A ++
Sbjct: 188 LAPEHCDPATLDAKDPLERAELVLSHAERMNCKRYLTAEEI 228


>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
          protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 39

 Score = 22.3 bits (48), Expect = 4.9
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 8/41 (19%)

Query: 21 VNSCPSSKSDKPCSGQGVCIEGV----CTCDAMYTGEACDV 57
          VN C S+    PC     C++ +    C C   Y G  C+V
Sbjct: 1  VNECVSN----PCQNDATCLDQIGEFQCICMPGYEGVHCEV 37


>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
          [TaxId: 4682]}
          Length = 425

 Score = 24.3 bits (52), Expect = 5.1
 Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 8/35 (22%)

Query: 33 CSG------QGVCIEG--VCTCDAMYTGEACDVPI 59
          CS        G+  EG   C C+  YTG  C   I
Sbjct: 20 CSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKI 54


>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 43

 Score = 22.4 bits (48), Expect = 6.0
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 33 CSGQGVCIEGVCTC-DAMYTGEACDV-PICP 61
          CSG+G C  G C C      G+ C+  P CP
Sbjct: 13 CSGRGKCECGSCVCIQPGSYGDTCEKCPTCP 43


>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 39

 Score = 22.0 bits (47), Expect = 7.1
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%)

Query: 29 SDKPCSGQGVCIEGV----CTCDAMYTGEACDV 57
             PC  QG C +G+    CTC   + G+ C++
Sbjct: 4  ETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 36


>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 39

 Score = 21.9 bits (47), Expect = 8.0
 Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 4/33 (12%)

Query: 29 SDKPCSGQGVCIEGV----CTCDAMYTGEACDV 57
             PC   G C + +    C C   + G+ C++
Sbjct: 7  ESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.454 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 459,171
Number of extensions: 22458
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 105
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)