BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3698
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DNL|A Chain A, Solution Structure Of Rna Binding Domain In Cytoplasmic
Polyadenylation Element Binding Protein 3
Length = 114
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWP-QGTPESPTAPKAISLDVISE----LVL 79
K+F+GG+P D E + F +FGP+ V+WP + +S PK + + E L
Sbjct: 9 RKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQAL 68
Query: 80 ILGQWATEGN--LC--------GRVEVVPWAISDSNY 106
I +G LC V++ PW +SDS++
Sbjct: 69 IDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDF 105
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 492 NKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMSS 530
K+F+GG+P D E + F +FGP+ ++AE S
Sbjct: 9 RKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKS 47
>pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
pdb|1U1K|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt 7da
Ggg); A Human Telomeric Repeat Containing
7-Deaza-Adenine
pdb|1U1L|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt Prn
Ggg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1M|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 7gu
Gg); A Human Telomeric Repeat Containing 7-Deaza-Guanine
pdb|1U1N|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta (Prn)
Gg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1O|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggttag(Di)g); A Human Telomeric Repeat Containing
Inosine
pdb|1U1P|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 2pr
Gg); A Human Telomeric Repeat Containing 2-Aminopurine
pdb|1U1Q|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggtta(Di)gg); A Human Telomeric Repeat Containing
Inosine
pdb|1U1R|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(2pr)
G); A Human Telomeric Repeat Containing 2-Aminopurine
Length = 196
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKV 53
KIF+GG+ DT E+ L F Q+G ++V
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 492 NKIFIGGVPWDTPEYLLLTVFSQFGPVKAV 521
KIF+GG+ DT E+ L F Q+G ++ +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
>pdb|1PGZ|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(6-Mi)
G); A Human Telomeric Repeat Containing 6-Methyl-8-(2-
Deoxy-Beta-Ribofuranosyl)isoxanthopteridine (6-Mi)
Length = 195
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKV 53
KIF+GG+ DT E+ L F Q+G ++V
Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEV 132
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 492 NKIFIGGVPWDTPEYLLLTVFSQFGPVKAV 521
KIF+GG+ DT E+ L F Q+G ++ +
Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 133
>pdb|2LYV|A Chain A, Solution Structure Of The Two Rrm Domains Of Hnrnp A1
(up1) Using Segmental Isotope Labeling
Length = 197
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKV 53
KIF+GG+ DT E+ L F Q+G ++V
Sbjct: 106 KKIFVGGIKEDTEEHHLRDYFEQYGKIEV 134
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 492 NKIFIGGVPWDTPEYLLLTVFSQFGPVKAV 521
KIF+GG+ DT E+ L F Q+G ++ +
Sbjct: 106 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 135
>pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex
pdb|1PO6|A Chain A, Crystal Structure Of Up1 Complexed With
D(Tagg(6mi)ttaggg): A Human Telomeric Repeat Containing
6-Methyl-8-(2-Deoxy-
Beta-Ribofuranosyl)isoxanthopteridine (6mi)
Length = 183
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKV 53
KIF+GG+ DT E+ L F Q+G ++V
Sbjct: 98 KKIFVGGIKEDTEEHHLRDYFEQYGKIEV 126
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 492 NKIFIGGVPWDTPEYLLLTVFSQFGPVKAV 521
KIF+GG+ DT E+ L F Q+G ++ +
Sbjct: 98 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 127
>pdb|1HA1|A Chain A, Hnrnp A1 (Rbd1,2) From Homo Sapiens
Length = 184
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKV 53
KIF+GG+ DT E+ L F Q+G ++V
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 492 NKIFIGGVPWDTPEYLLLTVFSQFGPVKAV 521
KIF+GG+ DT E+ L F Q+G ++ +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
>pdb|1UP1|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
Length = 182
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKV 53
KIF+GG+ DT E+ L F Q+G ++V
Sbjct: 103 KKIFVGGIKEDTEEHHLRDYFEQYGKIEV 131
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 492 NKIFIGGVPWDTPEYLLLTVFSQFGPVKAV 521
KIF+GG+ DT E+ L F Q+G ++ +
Sbjct: 103 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 132
>pdb|2DGS|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Daz- Associated Protein 1
Length = 99
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 492 NKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVM 523
NKIF+GG+P + E L F +FG V VVM
Sbjct: 11 NKIFVGGIPHNCGETELREYFKKFGVVTEVVM 42
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 25 NKIFIGGVPWDTPEYLLLTVFSQFGPV 51
NKIF+GG+P + E L F +FG V
Sbjct: 11 NKIFVGGIPHNCGETELREYFKKFGVV 37
>pdb|1UAW|A Chain A, Solution Structure Of The N-Terminal Rna-Binding Domain Of
Mouse Musashi1
Length = 77
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMS 529
K+FIGG+ W T + L F QFG VK ++ R ++
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT 38
Score = 32.3 bits (72), Expect = 0.66, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVK 52
K+FIGG+ W T + L F QFG VK
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVK 28
>pdb|2DH8|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Daz-Associated Protein 1
Length = 105
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 486 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMSS 530
+DEI K+F+GG+ W T + L + FSQ+G V V+ + + ++
Sbjct: 13 ADEI--GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTN 55
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPV 51
+DEI K+F+GG+ W T + L + FSQ+G V
Sbjct: 13 ADEI--GKLFVGGLDWSTTQETLRSYFSQYGEV 43
>pdb|2RS2|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Musashi1
Rbd1:r(Guagu) Complex
Length = 109
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMS 529
K+FIGG+ W T + L F QFG VK ++ R ++
Sbjct: 27 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT 63
Score = 32.0 bits (71), Expect = 0.80, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVK 52
K+FIGG+ W T + L F QFG VK
Sbjct: 27 KMFIGGLSWQTTQEGLREYFGQFGEVK 53
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 486 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVM 523
SDE K+F+GG+ +DT E L VFS++G + VV+
Sbjct: 10 SDE---GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVV 44
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPV 51
SDE K+F+GG+ +DT E L VFS++G +
Sbjct: 10 SDE---GKLFVGGLSFDTNEQSLEQVFSKYGQI 39
>pdb|2CQI|A Chain A, Solution Structure Of The Rna Binding Domain Of
Nucleolysin Tiar
Length = 103
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 494 IFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMSSD 531
+++G + D E L+L +FSQ GP K+ M S+D
Sbjct: 18 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSND 55
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 27 IFIGGVPWDTPEYLLLTVFSQFGPVK 52
+++G + D E L+L +FSQ GP K
Sbjct: 18 LYVGNLSRDVTEVLILQLFSQIGPCK 43
>pdb|3CXR|A Chain A, Crystal Structure Of Gluconate 5-Dehydrogase From
Streptococcus Suis Type 2
pdb|3O03|A Chain A, Quaternary Complex Structure Of Gluconate 5-Dehydrogenase
From Streptococcus Suis Type 2
Length = 291
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 391 GQSNVRANGTA-GSVPSPHTSPLNSPRSSGARH 422
G++N++ NG G + +P T+PL + G+RH
Sbjct: 202 GEANIQCNGIGPGYIATPQTAPLRELQKDGSRH 234
>pdb|1WTB|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D (Auf1) With Telomere Dna
pdb|1X0F|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D(Auf1) With Telomeric Dna
Length = 79
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAV 521
KIF+GG+ DTPE + F FG V+++
Sbjct: 3 KIFVGGLSPDTPEEKIREYFGGFGEVESI 31
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVK-VEWP 56
KIF+GG+ DTPE + F FG V+ +E P
Sbjct: 3 KIFVGGLSPDTPEEKIREYFGGFGEVESIELP 34
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition
In The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPV 51
S K+FIGG+ WDT E L F ++G V
Sbjct: 3 SCKMFIGGLNWDTTEDNLREYFGKYGTV 30
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPV 518
S K+FIGG+ WDT E L F ++G V
Sbjct: 3 SCKMFIGGLNWDTTEDNLREYFGKYGTV 30
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 103 DSNYSPQGHST-------KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGI 151
D NYSPQ +S +L PG VG G LTA L + DL G++V +
Sbjct: 124 DGNYSPQLNSETLAPVLRELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDV 179
>pdb|2FY1|A Chain A, A Dual Mode Of Rna Recognition By The Rbmy Protein
Length = 116
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMS 529
K+FIGG+ +T E +L VF + GP+ V++ + S
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS 45
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 27 IFIGGVPWDTPEYLLLTVFSQFGPV 51
+FIGG+ WDT + L FS+FG V
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEV 26
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 494 IFIGGVPWDTPEYLLLTVFSQFGPV 518
+FIGG+ WDT + L FS+FG V
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEV 26
>pdb|3S7R|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
pdb|3S7R|B Chain B, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
Length = 87
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPV 51
+ K F+GG+ WDT + L F++FG V
Sbjct: 11 AGKXFVGGLSWDTSKKDLKDYFTKFGEV 38
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPV 518
+ K F+GG+ WDT + L F++FG V
Sbjct: 11 AGKXFVGGLSWDTSKKDLKDYFTKFGEV 38
>pdb|1X4B|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleaoproteins A2B1
Length = 116
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 465 SANSQIPQKTWEGVLPLRTQFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMN 524
S+ S +KT E V PL + ++ K+FIGG+ ++T E L + Q+G + V+
Sbjct: 2 SSGSSGMEKTLETV-PLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVM 60
Query: 525 RAEMS 529
R S
Sbjct: 61 RDPAS 65
>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 27 IFIGGVPWDTPEYLLLTVFSQFGPV 51
+F+G +P++ E L +FS+ GPV
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPV 35
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 494 IFIGGVPWDTPEYLLLTVFSQFGPV 518
+F+G +P++ E L +FS+ GPV
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPV 35
>pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The
Ring Finger And Chy Zinc Finger Domain-Containing
Protein 1 From Mus Musculus
Length = 143
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 13/47 (27%)
Query: 190 CKKLQIDPYLEDNVCSECQTHSGPYFCREGICY-------RYFCRSC 229
C+KLQ C +C T G Y+C IC+ +Y C SC
Sbjct: 64 CEKLQ----HAQQTCEDCSTLFGEYYC--SICHLFDKDKRQYHCESC 104
>pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rna-Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein D0 (Auf1)
Length = 75
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 494 IFIGGVPWDTPEYLLLTVFSQFGPVKAV 521
IF+GG+ DTPE + F FG V+++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESI 29
>pdb|2CQD|A Chain A, Solution Structure Of The Rna Recognition Motif In Rna-
Binding Region Containing Protein 1
Length = 116
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAVVM 523
KIF+GG+P+ T + L F FG ++ V+
Sbjct: 19 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVV 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,320,232
Number of Sequences: 62578
Number of extensions: 608981
Number of successful extensions: 1375
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1315
Number of HSP's gapped (non-prelim): 70
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)