Query psy3698
Match_columns 534
No_of_seqs 325 out of 1609
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 23:16:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0129|consensus 100.0 4.8E-61 1E-65 506.6 19.4 245 7-253 243-513 (520)
2 TIGR01659 sex-lethal sex-letha 100.0 6.1E-27 1.3E-31 243.5 21.2 151 19-181 102-256 (346)
3 TIGR01645 half-pint poly-U bin 99.9 8.5E-25 1.8E-29 240.7 18.7 163 22-186 105-273 (612)
4 KOG0144|consensus 99.9 2.2E-25 4.7E-30 232.6 12.1 160 9-181 21-186 (510)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.5E-24 3.4E-29 220.6 16.9 146 24-181 3-152 (352)
6 TIGR01622 SF-CC1 splicing fact 99.9 7.9E-24 1.7E-28 223.4 19.4 160 20-181 85-249 (457)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 3.3E-23 7.1E-28 210.9 20.1 161 22-185 87-337 (352)
8 TIGR01628 PABP-1234 polyadenyl 99.9 2.8E-23 6.1E-28 225.8 16.8 146 26-181 2-150 (562)
9 KOG4205|consensus 99.9 1.4E-23 2.9E-28 215.5 10.7 167 23-199 5-174 (311)
10 KOG0117|consensus 99.9 7.6E-22 1.6E-26 206.9 16.3 148 8-180 75-228 (506)
11 TIGR01648 hnRNP-R-Q heterogene 99.9 1.1E-21 2.5E-26 215.4 16.7 140 22-180 56-202 (578)
12 TIGR01628 PABP-1234 polyadenyl 99.9 3E-21 6.5E-26 210.0 18.7 151 23-181 87-240 (562)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 9.9E-21 2.1E-25 202.3 19.0 155 19-181 170-358 (509)
14 KOG0148|consensus 99.8 3.6E-20 7.9E-25 184.9 16.2 148 26-181 64-221 (321)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 1.5E-19 3.2E-24 194.8 18.8 147 24-181 2-155 (481)
16 KOG0109|consensus 99.8 5.4E-20 1.2E-24 185.2 9.0 157 25-210 3-169 (346)
17 KOG0145|consensus 99.8 1E-19 2.3E-24 181.0 10.8 152 22-185 39-194 (360)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.8 1.8E-18 3.8E-23 185.0 19.4 157 23-181 294-485 (509)
19 TIGR01648 hnRNP-R-Q heterogene 99.8 1.7E-18 3.7E-23 190.5 17.2 150 22-185 136-295 (578)
20 KOG0127|consensus 99.8 1.5E-18 3.3E-23 185.6 15.4 154 24-181 117-355 (678)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 3.8E-18 8.2E-23 183.9 18.5 152 22-181 273-457 (481)
22 KOG0131|consensus 99.8 5E-19 1.1E-23 168.6 10.1 152 23-185 8-164 (203)
23 KOG0124|consensus 99.8 7.6E-19 1.6E-23 181.0 7.9 156 24-181 113-273 (544)
24 KOG0117|consensus 99.7 1.4E-17 3E-22 175.2 14.6 155 21-188 161-322 (506)
25 KOG0127|consensus 99.7 1.4E-17 3E-22 178.4 14.7 155 25-181 6-179 (678)
26 KOG0145|consensus 99.7 6.3E-17 1.4E-21 161.3 13.6 161 19-181 122-341 (360)
27 TIGR01622 SF-CC1 splicing fact 99.7 3.9E-16 8.4E-21 165.2 18.0 170 24-201 186-448 (457)
28 KOG0123|consensus 99.7 1.5E-16 3.3E-21 167.3 14.7 145 26-198 3-150 (369)
29 KOG0147|consensus 99.7 1.1E-17 2.3E-22 179.5 6.0 168 18-187 173-348 (549)
30 KOG0123|consensus 99.7 4.8E-16 1E-20 163.5 12.3 148 27-181 79-229 (369)
31 KOG0129|consensus 99.6 4.5E-16 9.8E-21 166.3 8.1 56 474-530 243-298 (520)
32 KOG0148|consensus 99.6 2.5E-15 5.5E-20 150.6 10.8 126 22-186 4-130 (321)
33 KOG0146|consensus 99.6 1.6E-14 3.4E-19 144.8 13.2 63 118-181 285-348 (371)
34 KOG0144|consensus 99.5 2.9E-14 6.3E-19 149.9 9.4 63 118-181 424-487 (510)
35 KOG0149|consensus 99.5 2.1E-14 4.5E-19 141.7 6.6 73 24-97 12-86 (247)
36 KOG0110|consensus 99.5 2.3E-13 5E-18 149.8 11.7 157 23-181 514-676 (725)
37 KOG0105|consensus 99.4 1.3E-12 2.9E-17 125.6 13.2 150 22-182 4-172 (241)
38 COG0724 RNA-binding proteins ( 99.4 2.2E-12 4.7E-17 120.3 12.9 152 24-177 115-284 (306)
39 KOG4211|consensus 99.4 3.3E-12 7.2E-17 136.4 15.6 154 22-180 8-165 (510)
40 PLN03134 glycine-rich RNA-bind 99.4 6.2E-13 1.3E-17 123.0 8.6 76 21-97 31-109 (144)
41 KOG0149|consensus 99.4 3.7E-13 7.9E-18 132.9 6.9 69 117-186 11-80 (247)
42 PLN03134 glycine-rich RNA-bind 99.4 3E-12 6.6E-17 118.5 10.1 69 116-185 32-102 (144)
43 KOG4212|consensus 99.3 1.5E-09 3.4E-14 115.0 27.8 154 25-181 45-277 (608)
44 PF00076 RRM_1: RNA recognitio 99.3 1.7E-11 3.7E-16 95.9 8.4 60 121-181 1-60 (70)
45 PF00076 RRM_1: RNA recognitio 99.2 1.1E-11 2.4E-16 97.0 5.5 63 27-91 1-66 (70)
46 TIGR01659 sex-lethal sex-letha 99.2 5.8E-11 1.2E-15 124.4 9.7 65 116-181 105-170 (346)
47 PF14259 RRM_6: RNA recognitio 99.1 1.9E-10 4.1E-15 91.5 8.0 65 121-186 1-66 (70)
48 PLN03120 nucleic acid binding 99.1 2E-10 4.3E-15 115.9 8.5 72 24-99 4-77 (260)
49 PF14259 RRM_6: RNA recognitio 99.1 1.4E-10 3E-15 92.3 5.6 65 27-93 1-68 (70)
50 smart00362 RRM_2 RNA recogniti 99.1 1.2E-09 2.5E-14 83.6 9.4 64 120-185 1-65 (72)
51 KOG0125|consensus 99.1 2.7E-10 6E-15 117.2 7.5 84 116-201 94-188 (376)
52 PLN03121 nucleic acid binding 99.0 6.9E-10 1.5E-14 110.9 8.6 74 24-101 5-80 (243)
53 KOG4206|consensus 99.0 8E-09 1.7E-13 101.9 15.1 147 26-181 11-204 (221)
54 KOG0113|consensus 99.0 5.4E-10 1.2E-14 113.9 7.1 72 24-96 101-175 (335)
55 KOG0113|consensus 99.0 1.2E-09 2.6E-14 111.4 9.3 73 112-185 95-169 (335)
56 COG0724 RNA-binding proteins ( 99.0 1.4E-09 3.1E-14 101.4 9.2 67 118-185 115-183 (306)
57 KOG0110|consensus 99.0 3.6E-09 7.7E-14 117.3 13.0 154 20-181 381-581 (725)
58 KOG0121|consensus 99.0 9.3E-10 2E-14 100.9 6.6 76 20-96 32-110 (153)
59 smart00362 RRM_2 RNA recogniti 99.0 2.1E-09 4.6E-14 82.1 7.7 66 26-94 1-69 (72)
60 KOG0106|consensus 99.0 8E-10 1.7E-14 109.0 6.6 139 25-181 2-154 (216)
61 PLN03120 nucleic acid binding 99.0 1.7E-09 3.6E-14 109.3 9.0 73 118-197 4-76 (260)
62 KOG0122|consensus 99.0 1.3E-09 2.7E-14 108.8 7.8 65 116-181 187-252 (270)
63 smart00360 RRM RNA recognition 99.0 3.9E-09 8.4E-14 80.2 8.4 58 123-181 1-59 (71)
64 TIGR01645 half-pint poly-U bin 98.9 2.2E-09 4.7E-14 119.7 9.3 65 116-181 105-170 (612)
65 smart00360 RRM RNA recognition 98.9 3.2E-09 6.9E-14 80.7 6.9 65 29-94 1-68 (71)
66 KOG0125|consensus 98.9 4.9E-09 1.1E-13 108.1 7.9 77 18-97 90-169 (376)
67 PLN03121 nucleic acid binding 98.8 8.7E-09 1.9E-13 103.1 9.1 74 118-198 5-78 (243)
68 KOG0147|consensus 98.8 1.2E-08 2.5E-13 110.8 10.6 56 27-83 281-338 (549)
69 KOG0107|consensus 98.8 6.7E-09 1.5E-13 99.4 6.5 69 22-96 8-79 (195)
70 KOG4207|consensus 98.8 8.5E-09 1.8E-13 101.0 7.1 82 114-198 9-92 (256)
71 PLN03213 repressor of silencin 98.8 1.3E-08 2.8E-13 109.3 8.4 73 19-96 5-82 (759)
72 cd00590 RRM RRM (RNA recogniti 98.8 3E-08 6.5E-13 76.1 8.2 62 120-182 1-62 (74)
73 KOG0122|consensus 98.8 1.3E-08 2.9E-13 101.6 6.8 70 20-90 185-257 (270)
74 KOG0126|consensus 98.8 1.3E-09 2.8E-14 104.9 -0.3 63 118-181 35-98 (219)
75 KOG1457|consensus 98.8 5.4E-08 1.2E-12 96.4 10.9 59 118-180 210-268 (284)
76 cd00590 RRM RRM (RNA recogniti 98.7 4.3E-08 9.3E-13 75.2 8.1 69 26-96 1-72 (74)
77 KOG0126|consensus 98.7 1.2E-09 2.5E-14 105.2 -1.2 77 19-96 30-109 (219)
78 KOG4205|consensus 98.7 1.1E-08 2.4E-13 106.1 5.3 74 24-98 97-172 (311)
79 KOG0107|consensus 98.7 2.9E-08 6.3E-13 95.1 7.6 59 118-181 10-68 (195)
80 PLN03213 repressor of silencin 98.7 3E-08 6.5E-13 106.6 8.1 67 117-187 9-78 (759)
81 KOG4454|consensus 98.7 5.3E-09 1.2E-13 103.1 1.9 132 21-179 6-144 (267)
82 KOG4210|consensus 98.7 2.2E-08 4.8E-13 102.7 6.4 169 6-179 72-246 (285)
83 KOG0128|consensus 98.7 1.6E-09 3.6E-14 121.8 -2.4 135 22-184 665-801 (881)
84 KOG0146|consensus 98.7 2.2E-08 4.9E-13 101.1 5.0 79 92-181 3-81 (371)
85 KOG0108|consensus 98.6 5.8E-08 1.3E-12 104.7 7.4 72 25-97 19-93 (435)
86 KOG4207|consensus 98.6 1E-07 2.2E-12 93.5 7.1 72 24-96 13-87 (256)
87 KOG4212|consensus 98.5 1.3E-07 2.9E-12 100.6 7.4 70 118-187 44-114 (608)
88 KOG0121|consensus 98.5 1.1E-07 2.4E-12 87.4 5.8 63 117-180 35-98 (153)
89 KOG0108|consensus 98.5 1.3E-07 2.9E-12 101.9 7.0 67 119-186 19-87 (435)
90 KOG0131|consensus 98.5 1.2E-07 2.6E-12 91.4 5.9 65 116-181 7-72 (203)
91 KOG0111|consensus 98.5 1E-07 2.2E-12 94.3 3.9 65 116-181 8-73 (298)
92 KOG0114|consensus 98.5 4.9E-07 1.1E-11 80.7 7.6 76 20-99 14-92 (124)
93 KOG1365|consensus 98.5 1.1E-06 2.3E-11 92.6 11.3 152 26-181 163-345 (508)
94 KOG1548|consensus 98.5 3.9E-06 8.5E-11 87.5 15.3 154 22-181 132-335 (382)
95 KOG0132|consensus 98.4 3.7E-07 8E-12 102.5 7.5 77 18-102 415-494 (894)
96 smart00361 RRM_1 RNA recogniti 98.4 5.6E-07 1.2E-11 73.0 6.7 49 132-181 2-58 (70)
97 KOG0130|consensus 98.4 3.7E-07 8E-12 84.7 5.9 67 114-181 68-135 (170)
98 KOG0120|consensus 98.4 2E-06 4.4E-11 93.9 12.1 171 19-198 284-488 (500)
99 KOG0111|consensus 98.4 1.9E-07 4.1E-12 92.4 3.7 77 20-97 6-85 (298)
100 KOG0109|consensus 98.4 3.4E-07 7.4E-12 93.6 4.9 83 119-210 3-93 (346)
101 KOG0114|consensus 98.4 1.2E-06 2.6E-11 78.2 7.6 63 116-181 16-78 (124)
102 KOG0226|consensus 98.3 9.8E-07 2.1E-11 88.9 6.2 147 25-181 97-253 (290)
103 smart00361 RRM_1 RNA recogniti 98.3 1.4E-06 3E-11 70.7 5.9 58 37-95 1-68 (70)
104 KOG0105|consensus 98.2 1.1E-06 2.4E-11 85.3 5.2 61 118-181 6-66 (241)
105 KOG0120|consensus 98.2 3.2E-06 7E-11 92.4 8.7 155 19-181 170-352 (500)
106 KOG0112|consensus 98.2 1.1E-06 2.5E-11 99.9 4.9 143 18-180 366-511 (975)
107 KOG4211|consensus 98.2 1.1E-05 2.3E-10 87.3 10.9 154 23-180 102-341 (510)
108 KOG0132|consensus 98.1 4.2E-06 9.1E-11 94.2 6.8 58 118-181 421-478 (894)
109 KOG0130|consensus 98.1 4.7E-06 1E-10 77.5 5.9 75 24-100 72-149 (170)
110 KOG0124|consensus 98.0 5.1E-06 1.1E-10 87.3 5.1 70 118-188 113-183 (544)
111 KOG0415|consensus 97.9 7.2E-06 1.6E-10 85.9 4.4 87 6-96 224-313 (479)
112 KOG0116|consensus 97.9 1.2E-05 2.5E-10 86.8 5.7 72 25-97 289-362 (419)
113 KOG1190|consensus 97.9 3.3E-05 7E-10 82.3 8.8 145 22-179 26-207 (492)
114 KOG4208|consensus 97.9 1.7E-05 3.6E-10 78.0 6.1 72 24-96 49-124 (214)
115 KOG0153|consensus 97.9 2.8E-05 6.1E-10 81.3 7.2 59 117-181 227-285 (377)
116 PF13893 RRM_5: RNA recognitio 97.9 4E-05 8.7E-10 59.1 6.2 42 135-181 1-42 (56)
117 KOG0116|consensus 97.8 1.9E-05 4.1E-10 85.2 5.5 70 118-188 288-358 (419)
118 KOG4209|consensus 97.8 2.1E-05 4.5E-10 78.9 4.9 84 18-102 95-180 (231)
119 KOG4208|consensus 97.7 7E-05 1.5E-09 73.7 7.3 64 117-181 48-113 (214)
120 KOG4206|consensus 97.7 7.8E-05 1.7E-09 74.1 7.4 64 115-181 6-73 (221)
121 KOG0415|consensus 97.7 3.6E-05 7.7E-10 80.8 4.8 69 116-185 237-307 (479)
122 KOG0153|consensus 97.7 6.8E-05 1.5E-09 78.5 6.8 73 22-102 226-302 (377)
123 PF13893 RRM_5: RNA recognitio 97.7 9.5E-05 2.1E-09 57.0 5.4 50 41-96 1-53 (56)
124 KOG0533|consensus 97.6 0.00014 3.1E-09 73.5 7.4 67 119-186 84-151 (243)
125 KOG1365|consensus 97.5 0.00055 1.2E-08 72.8 10.8 147 27-179 63-225 (508)
126 KOG4661|consensus 97.5 0.00011 2.5E-09 80.8 5.9 63 118-181 405-468 (940)
127 PF04059 RRM_2: RNA recognitio 97.5 0.00052 1.1E-08 60.5 8.7 63 119-181 2-66 (97)
128 KOG1190|consensus 97.5 0.001 2.2E-08 71.2 12.3 148 24-181 297-473 (492)
129 KOG4660|consensus 97.5 0.0001 2.2E-09 80.9 4.8 69 21-95 72-143 (549)
130 KOG0226|consensus 97.5 9E-05 2E-09 75.0 3.9 78 19-97 185-265 (290)
131 KOG4209|consensus 97.4 0.00015 3.2E-09 72.8 5.0 73 116-189 99-172 (231)
132 KOG4454|consensus 97.4 0.0001 2.2E-09 73.4 3.5 64 116-181 7-70 (267)
133 KOG4307|consensus 97.2 0.00062 1.4E-08 76.6 7.4 156 23-181 310-497 (944)
134 KOG4661|consensus 97.2 0.00049 1.1E-08 75.9 6.4 75 20-95 401-478 (940)
135 KOG1457|consensus 97.1 0.0019 4.1E-08 64.8 8.6 65 116-181 32-98 (284)
136 KOG0533|consensus 97.1 0.0014 3E-08 66.4 7.6 63 20-84 79-143 (243)
137 KOG1456|consensus 97.1 0.035 7.7E-07 59.3 18.0 147 20-181 27-180 (494)
138 KOG0128|consensus 97.0 7E-05 1.5E-09 85.4 -2.5 158 19-184 566-733 (881)
139 KOG1456|consensus 96.8 0.017 3.8E-07 61.6 12.8 152 23-181 286-468 (494)
140 KOG4660|consensus 96.8 0.0017 3.7E-08 71.6 5.2 66 111-181 68-133 (549)
141 KOG0151|consensus 96.5 0.0033 7.1E-08 71.1 5.6 63 118-181 174-240 (877)
142 KOG0151|consensus 96.5 0.0077 1.7E-07 68.3 8.2 64 21-84 171-238 (877)
143 KOG0106|consensus 96.5 0.0017 3.7E-08 64.7 2.6 54 120-181 3-56 (216)
144 PF08777 RRM_3: RNA binding mo 96.4 0.007 1.5E-07 53.8 6.1 56 120-181 3-58 (105)
145 KOG1548|consensus 96.2 0.011 2.3E-07 62.5 6.7 63 118-181 134-204 (382)
146 PF04059 RRM_2: RNA recognitio 95.8 0.033 7.2E-07 49.2 7.0 59 25-84 2-64 (97)
147 KOG4210|consensus 95.8 0.011 2.3E-07 61.3 4.5 66 25-91 185-253 (285)
148 KOG4849|consensus 95.7 0.0095 2.1E-07 63.0 3.7 65 26-91 82-151 (498)
149 PF14605 Nup35_RRM_2: Nup53/35 95.2 0.047 1E-06 42.9 5.3 52 119-177 2-53 (53)
150 PF08777 RRM_3: RNA binding mo 95.1 0.045 9.8E-07 48.7 5.7 53 25-84 2-56 (105)
151 PF14605 Nup35_RRM_2: Nup53/35 95.1 0.049 1.1E-06 42.7 5.2 50 25-82 2-53 (53)
152 KOG4676|consensus 94.9 0.023 5.1E-07 60.9 3.7 155 26-184 9-213 (479)
153 KOG1855|consensus 94.7 0.042 9.1E-07 59.5 5.0 64 117-181 230-307 (484)
154 KOG1995|consensus 94.6 0.032 7E-07 59.1 4.0 63 116-179 64-135 (351)
155 KOG1995|consensus 93.0 0.12 2.5E-06 55.0 4.5 63 21-84 63-135 (351)
156 KOG1855|consensus 92.8 0.15 3.3E-06 55.4 5.1 66 19-84 226-305 (484)
157 KOG4849|consensus 92.5 0.092 2E-06 55.8 3.0 62 117-179 79-143 (498)
158 KOG0115|consensus 92.5 0.11 2.4E-06 53.3 3.4 62 118-180 31-92 (275)
159 COG5175 MOT2 Transcriptional r 91.9 0.22 4.9E-06 52.8 4.9 74 111-185 107-190 (480)
160 KOG2193|consensus 91.4 0.11 2.3E-06 56.5 2.0 132 25-181 2-140 (584)
161 KOG2314|consensus 91.3 0.27 5.9E-06 55.1 5.0 63 118-181 58-126 (698)
162 PF11608 Limkain-b1: Limkain b 91.2 0.69 1.5E-05 40.5 6.4 55 119-182 3-61 (90)
163 PF05172 Nup35_RRM: Nup53/35/4 89.1 0.88 1.9E-05 40.5 5.5 68 23-91 5-80 (100)
164 PF05172 Nup35_RRM: Nup53/35/4 89.1 1.2 2.5E-05 39.8 6.3 66 118-185 6-79 (100)
165 COG5175 MOT2 Transcriptional r 87.8 0.99 2.1E-05 48.2 5.8 71 24-94 114-195 (480)
166 KOG3152|consensus 87.7 0.53 1.2E-05 48.4 3.6 38 25-62 75-112 (278)
167 KOG0115|consensus 85.3 0.69 1.5E-05 47.6 3.0 58 25-84 32-91 (275)
168 PF08675 RNA_bind: RNA binding 85.1 3.6 7.9E-05 36.0 6.8 50 26-84 10-61 (87)
169 KOG0112|consensus 84.3 0.23 5.1E-06 58.0 -1.0 62 117-179 371-432 (975)
170 KOG2314|consensus 83.4 2.1 4.6E-05 48.3 5.9 65 18-84 52-124 (698)
171 PF08952 DUF1866: Domain of un 82.4 1.6 3.6E-05 41.4 4.0 50 40-98 52-103 (146)
172 PF10309 DUF2414: Protein of u 82.3 5.8 0.00013 32.6 6.6 52 22-83 3-60 (62)
173 PF08952 DUF1866: Domain of un 81.7 3.1 6.6E-05 39.7 5.5 69 117-193 26-103 (146)
174 PF03467 Smg4_UPF3: Smg-4/UPF3 81.3 3.4 7.4E-05 40.0 5.9 80 118-198 7-97 (176)
175 KOG4307|consensus 81.1 2.7 5.9E-05 48.6 5.8 71 25-96 868-941 (944)
176 PF10309 DUF2414: Protein of u 76.8 10 0.00022 31.3 6.4 53 119-179 6-61 (62)
177 KOG2193|consensus 73.1 3.5 7.7E-05 45.3 3.7 56 119-181 2-58 (584)
178 PF00643 zf-B_box: B-box zinc 71.2 1.5 3.2E-05 32.1 0.3 34 201-236 3-36 (42)
179 PF15023 DUF4523: Protein of u 69.6 14 0.0003 35.6 6.4 60 115-181 83-146 (166)
180 PF11608 Limkain-b1: Limkain b 68.7 18 0.00039 31.9 6.4 61 26-97 4-72 (90)
181 KOG2202|consensus 67.4 2.2 4.8E-05 43.9 0.7 49 133-181 83-131 (260)
182 KOG2202|consensus 67.1 2.8 6E-05 43.2 1.3 54 40-95 84-141 (260)
183 KOG3152|consensus 67.0 5.1 0.00011 41.5 3.1 63 118-181 74-149 (278)
184 PF08675 RNA_bind: RNA binding 66.1 21 0.00046 31.3 6.3 54 119-180 9-62 (87)
185 KOG1996|consensus 64.4 17 0.00036 38.6 6.3 53 133-186 301-355 (378)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 62.6 8.2 0.00018 37.4 3.5 64 21-84 4-74 (176)
187 PF07292 NID: Nmi/IFP 35 domai 60.8 12 0.00026 32.8 3.9 39 163-201 1-39 (88)
188 PF07292 NID: Nmi/IFP 35 domai 60.1 3.9 8.5E-05 35.8 0.8 67 70-139 1-73 (88)
189 KOG2068|consensus 57.0 9.6 0.00021 40.7 3.1 64 117-181 76-146 (327)
190 KOG2253|consensus 55.6 14 0.0003 42.7 4.2 108 20-139 36-156 (668)
191 KOG2416|consensus 54.1 7.1 0.00015 44.5 1.7 62 115-181 441-502 (718)
192 KOG2253|consensus 48.6 11 0.00024 43.4 2.2 59 114-181 36-94 (668)
193 PF14111 DUF4283: Domain of un 48.3 41 0.00089 30.4 5.5 127 25-166 16-151 (153)
194 KOG2068|consensus 45.4 15 0.00033 39.2 2.5 64 21-84 74-144 (327)
195 PF15023 DUF4523: Protein of u 42.3 48 0.001 32.0 5.0 64 25-96 87-156 (166)
196 KOG4676|consensus 42.2 35 0.00075 37.6 4.5 79 119-203 8-91 (479)
197 KOG1996|consensus 40.0 51 0.0011 35.1 5.2 57 38-95 300-360 (378)
198 KOG2591|consensus 37.9 53 0.0011 37.7 5.2 64 24-95 175-245 (684)
199 PRK14548 50S ribosomal protein 36.9 99 0.0022 26.9 5.7 57 121-179 23-80 (84)
200 PF03468 XS: XS domain; Inter 36.0 23 0.00051 32.2 1.9 53 27-83 11-75 (116)
201 KOG0119|consensus 35.4 25 0.00055 39.5 2.3 76 162-237 206-299 (554)
202 KOG2416|consensus 35.3 29 0.00063 39.9 2.8 56 22-84 442-503 (718)
203 KOG4285|consensus 34.9 52 0.0011 35.1 4.4 58 26-91 199-258 (350)
204 TIGR03636 L23_arch archaeal ri 34.7 1.1E+02 0.0025 26.1 5.7 57 120-178 15-72 (77)
205 PF15407 Spo7_2_N: Sporulation 34.4 21 0.00045 29.8 1.1 17 489-505 25-41 (67)
206 PF14893 PNMA: PNMA 33.8 27 0.00058 37.4 2.2 58 6-76 10-71 (331)
207 cd00021 BBOX B-Box-type zinc f 32.8 22 0.00048 25.0 1.0 31 203-235 2-32 (39)
208 COG4907 Predicted membrane pro 32.7 35 0.00076 38.3 2.8 8 352-359 514-521 (595)
209 PF11767 SET_assoc: Histone ly 30.8 1.1E+02 0.0024 25.5 4.8 44 129-181 11-54 (66)
210 PF00403 HMA: Heavy-metal-asso 29.4 2.5E+02 0.0054 21.5 6.5 56 120-181 1-60 (62)
211 KOG2891|consensus 28.7 49 0.0011 35.0 3.0 36 24-59 149-197 (445)
212 COG4098 comFA Superfamily II D 28.7 21 0.00046 38.9 0.4 33 203-236 41-73 (441)
213 KOG2591|consensus 28.5 1.2E+02 0.0026 34.9 6.1 57 118-180 175-232 (684)
214 PF15513 DUF4651: Domain of un 28.2 53 0.0012 27.2 2.5 19 39-57 9-27 (62)
215 cd03331 Macro_Poa1p_like_SNF2 27.8 20 0.00044 34.1 0.1 17 497-513 134-150 (152)
216 PF07576 BRAP2: BRCA1-associat 27.1 3.7E+02 0.0081 24.4 8.0 60 119-179 14-73 (110)
217 COG2816 NPY1 NTP pyrophosphohy 24.7 68 0.0015 33.8 3.2 65 202-272 112-176 (279)
218 PHA02595 tk.4 hypothetical pro 24.7 36 0.00077 32.2 1.1 19 496-514 125-143 (154)
219 TIGR02542 B_forsyth_147 Bacter 23.5 1.6E+02 0.0034 27.7 4.9 39 126-167 82-123 (145)
220 KOG4285|consensus 22.7 1.6E+02 0.0036 31.5 5.5 69 121-199 200-268 (350)
221 PF10058 DUF2296: Predicted in 21.5 50 0.0011 26.4 1.2 31 202-232 23-53 (54)
222 PF02714 DUF221: Domain of unk 20.7 87 0.0019 32.2 3.1 42 163-207 1-42 (325)
223 PF07282 OrfB_Zn_ribbon: Putat 20.6 78 0.0017 25.4 2.2 39 192-234 19-57 (69)
No 1
>KOG0129|consensus
Probab=100.00 E-value=4.8e-61 Score=506.61 Aligned_cols=245 Identities=41% Similarity=0.839 Sum_probs=231.5
Q ss_pred cccCCCCCCCCCCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCC-CCCCc---EEEEEe-hH-HHHH
Q psy3698 7 TWEGVLPLRTQFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESP-TAPKA---ISLDVI-SE-LVLI 80 (534)
Q Consensus 7 tWsG~lPPR~~~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg-~rsRG---YAFVtF-sE-sAea 80 (534)
||+|.+|++. +..+++++|||||+|||+|+|++|...|..||.|.+.|+.+....+ ..++| |+|+.| .| +|++
T Consensus 243 ~~~~~~~~~~-~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~ 321 (520)
T KOG0129|consen 243 TWSGSLPPRG-YRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQS 321 (520)
T ss_pred hhccccCCCC-CCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHH
Confidence 8999999999 9999999999999999999999999999999999999997654322 24678 999999 88 9999
Q ss_pred HHhh------------cCCCCccccceecccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEE
Q psy3698 81 LGQW------------ATEGNLCGRVEVVPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVY 148 (534)
Q Consensus 81 ALq~------------ssr~i~~k~VQVrPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~ 148 (534)
+|.+ +.++++.+.||++||.+.|.+|+. ..++.+|+++|||||+||..+|+++|+.+|++.||.|++
T Consensus 322 Ll~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~-d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~y 400 (520)
T KOG0129|consen 322 LLSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVL-DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLY 400 (520)
T ss_pred HHHHHhhcccceEEEEecCcccccceeEEeeEeccchhhh-ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEE
Confidence 9987 678899999999999999999998 689999999999999999999999999999889999999
Q ss_pred EEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceeeccceeeeeeecccc-ccccccccCC-----CCccccCCCCcc
Q psy3698 149 AGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVKSGRICKKLQIDPYL-EDNVCSECQT-----HSGPYFCREGIC 221 (534)
Q Consensus 149 V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk~~k~~KrVeIkPyL-eDq~CdeC~~-----~~g~YfC~~~~C 221 (534)
|.|++|+ .|||||.|+|+|++.+++.+||.++||+|.+.++.||||||||+ |||+|+||++ +.+||||+++.|
T Consensus 401 aGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv~eDq~CdeC~g~~c~~q~aPfFC~n~~C 480 (520)
T KOG0129|consen 401 VGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYVMEDQLCDECGGRRCGGQFAPFFCRNATC 480 (520)
T ss_pred EEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeeeecceeccccchhhhcCeeccCccCCcccCCccH
Confidence 9999995 99999999999999999999999999999999999999999997 9999999998 899999999999
Q ss_pred cccccccccccccCCC-CCCCCceecCCCCCCC
Q psy3698 222 YRYFCRSCWLKVHIGE-YSQHDPIVRNVRKSPP 253 (534)
Q Consensus 222 ~~YyC~sCw~~~H~~~-~~~HkPl~r~~~~~~~ 253 (534)
|||||+.||+++|+++ ...||||+|+++++.+
T Consensus 481 ~QYYCe~CWa~~HS~~~r~~HkPlvr~~~dr~~ 513 (520)
T KOG0129|consen 481 FQYYCESCWAKIHSGPGREHHKPLVRPGKDRPR 513 (520)
T ss_pred HhhhchHHHHHhhcCCchhcCCceecccccCCC
Confidence 9999999999999999 8899999999999843
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=6.1e-27 Score=243.49 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=130.4
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
.+....++|||+|||+++||++|+++|++||+|+.++|++|..++ ++||||||+| ++ +|++||+. ....+..+.+.
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg-~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTG-YSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-ccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 455567899999999999999999999999999999999999988 9999999999 66 88888864 66677777776
Q ss_pred ecccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHH
Q psy3698 96 VVPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYS 174 (534)
Q Consensus 96 VrPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~ 174 (534)
+.. .. +........+|||+|||..+|+++|+++| ++||.|+.+.|+.|+ ++++||||||+|.+.++|+
T Consensus 181 V~~-a~---------p~~~~~~~~~lfV~nLp~~vtee~L~~~F-~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 249 (346)
T TIGR01659 181 VSY-AR---------PGGESIKDTNLYVTNLPRTITDDQLDTIF-GKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQ 249 (346)
T ss_pred eec-cc---------ccccccccceeEEeCCCCcccHHHHHHHH-HhcCCEEEEEEeecCCCCccceEEEEEECCHHHHH
Confidence 652 11 11111235689999999999999999999 999999999999998 9999999999999999999
Q ss_pred HHHHhcC
Q psy3698 175 DAIRAAF 181 (534)
Q Consensus 175 kAIea~~ 181 (534)
+||++.+
T Consensus 250 ~Ai~~ln 256 (346)
T TIGR01659 250 EAISALN 256 (346)
T ss_pred HHHHHhC
Confidence 9999977
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=8.5e-25 Score=240.74 Aligned_cols=163 Identities=15% Similarity=0.216 Sum_probs=131.6
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceecc
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVP 98 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrP 98 (534)
...++|||||||+++||++|+++|++||+|..+.+++|+.++ ++||||||+| +. +|++|++. ++..+.++.+.+..
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tg-kskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATG-KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCC-CcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 456899999999999999999999999999999999999998 9999999999 55 89999874 66667777776651
Q ss_pred cc-cCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHH
Q psy3698 99 WA-ISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDA 176 (534)
Q Consensus 99 w~-lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kA 176 (534)
-. ..................++|||+|||..+++++|+++| +.||.|+.++|..|+ ++++||||||+|.+.++|.+|
T Consensus 184 p~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lF-s~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 184 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred cccccccccccccccccccccceEEeecCCCCCCHHHHHHHH-hhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 10 000000000001112345789999999999999999999 899999999999998 889999999999999999999
Q ss_pred HHhcC-ceeec
Q psy3698 177 IRAAF-IEVKS 186 (534)
Q Consensus 177 Iea~~-veIk~ 186 (534)
|++.+ .++.+
T Consensus 263 I~amNg~elgG 273 (612)
T TIGR01645 263 IASMNLFDLGG 273 (612)
T ss_pred HHHhCCCeeCC
Confidence 99876 45543
No 4
>KOG0144|consensus
Probab=99.92 E-value=2.2e-25 Score=232.58 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=134.1
Q ss_pred cCCCCCCCCCCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh--
Q psy3698 9 EGVLPLRTQFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-- 84 (534)
Q Consensus 9 sG~lPPR~~~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-- 84 (534)
.|.++..+ .+..+.-|+|||.||+.++|+|||++|++||.|.++.++||+.|+ .+||||||+| +. ++++|++.
T Consensus 21 ~~~~~~~d--~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~-~s~gcCFv~~~trk~a~~a~~Alh 97 (510)
T KOG0144|consen 21 NGSLDHTD--NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTG-QSKGCCFVKYYTRKEADEAINALH 97 (510)
T ss_pred cCCCCCCC--CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccC-cccceEEEEeccHHHHHHHHHHhh
Confidence 45555444 344778899999999999999999999999999999999999999 9999999999 44 66666665
Q ss_pred cCCCCcc--ccceecccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceE
Q psy3698 85 ATEGNLC--GRVEVVPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGS 162 (534)
Q Consensus 85 ssr~i~~--k~VQVrPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGf 162 (534)
+.+.+.+ .+||+++...+. .++...++||||-|+..+||.+++++| .+||.|+++.|.+|+.+.+|||
T Consensus 98 n~ktlpG~~~pvqvk~Ad~E~---------er~~~e~KLFvg~lsK~~te~evr~iF-s~fG~Ied~~ilrd~~~~sRGc 167 (510)
T KOG0144|consen 98 NQKTLPGMHHPVQVKYADGER---------ERIVEERKLFVGMLSKQCTENEVREIF-SRFGHIEDCYILRDPDGLSRGC 167 (510)
T ss_pred cccccCCCCcceeecccchhh---------hccccchhhhhhhccccccHHHHHHHH-HhhCccchhhheecccccccce
Confidence 3334443 567877532221 223346889999999999999999999 9999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHhcC
Q psy3698 163 GRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 163 GFVtF~d~EsA~kAIea~~ 181 (534)
|||+|.++|-|+.||++.+
T Consensus 168 aFV~fstke~A~~Aika~n 186 (510)
T KOG0144|consen 168 AFVKFSTKEMAVAAIKALN 186 (510)
T ss_pred eEEEEehHHHHHHHHHhhc
Confidence 9999999999999999987
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=1.5e-24 Score=220.57 Aligned_cols=146 Identities=14% Similarity=0.143 Sum_probs=126.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceecccc
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPWA 100 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw~ 100 (534)
..+|||||||.++||++|+++|++||+|..+++++|+.++ ++||||||+| ++ +|++||+. .+..+.++.+.+.. .
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g-~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~-a 80 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTG-QSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSY-A 80 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCC-ccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEe-e
Confidence 4689999999999999999999999999999999999888 8999999999 55 88888874 66677777777752 1
Q ss_pred cCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 101 ISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 101 lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea 179 (534)
.. ........+|||+|||..+++++|+++| +.||.|+.+.|..|. ++.++|||||+|.+.++|.+||+.
T Consensus 81 ~~---------~~~~~~~~~l~v~~l~~~~~~~~l~~~f-~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~ 150 (352)
T TIGR01661 81 RP---------SSDSIKGANLYVSGLPKTMTQHELESIF-SPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKT 150 (352)
T ss_pred cc---------cccccccceEEECCccccCCHHHHHHHH-hccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 11 1111235689999999999999999999 999999999999987 889999999999999999999988
Q ss_pred cC
Q psy3698 180 AF 181 (534)
Q Consensus 180 ~~ 181 (534)
.+
T Consensus 151 l~ 152 (352)
T TIGR01661 151 LN 152 (352)
T ss_pred hC
Confidence 65
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=7.9e-24 Score=223.42 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=131.7
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
.+...++|||+|||+++||++|+++|++||+|..+.+++|+.++ ++||||||+| +. +|++||++.+..+.++.+.+.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~-~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSR-RSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC-CcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEe
Confidence 44567899999999999999999999999999999999999888 9999999999 55 999999988777777777665
Q ss_pred ccccCCCCCCC--CCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHH
Q psy3698 98 PWAISDSNYSP--QGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYS 174 (534)
Q Consensus 98 Pw~lsds~~~~--~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~ 174 (534)
.-......... ...........+|||+|||..+|+++|+++| +.||.|..|.|..|+ +|.++|||||+|.+.++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f-~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIF-EPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 32111000000 0001111235899999999999999999999 999999999999998 7899999999999999999
Q ss_pred HHHHhcC
Q psy3698 175 DAIRAAF 181 (534)
Q Consensus 175 kAIea~~ 181 (534)
+||+..+
T Consensus 243 ~A~~~l~ 249 (457)
T TIGR01622 243 EALEVMN 249 (457)
T ss_pred HHHHhcC
Confidence 9998765
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.91 E-value=3.3e-23 Score=210.89 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=121.6
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcc--cccee
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLC--GRVEV 96 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~--k~VQV 96 (534)
...++|||+|||.++++++|+++|++||+|..+.++++..++ .++|||||+| +. +|++|++. .+..+.+ +++.+
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~-~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v 165 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTG-LSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITV 165 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCC-CcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 446789999999999999999999999999999999988777 8999999999 55 88888875 3332222 11111
Q ss_pred cccccCCC-----------------CCC----------------------------------------------------
Q psy3698 97 VPWAISDS-----------------NYS---------------------------------------------------- 107 (534)
Q Consensus 97 rPw~lsds-----------------~~~---------------------------------------------------- 107 (534)
. |..... ...
T Consensus 166 ~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR01661 166 K-FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRA 244 (352)
T ss_pred E-ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccC
Confidence 1 000000 000
Q ss_pred -CC-------------CCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHH
Q psy3698 108 -PQ-------------GHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRA 172 (534)
Q Consensus 108 -~~-------------~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~Es 172 (534)
.. .........++|||+|||..+++++|+++| ++||.|++|+|.+|+ ++.+||||||+|.+.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F-~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~ 323 (352)
T TIGR01661 245 SPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLF-GPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDE 323 (352)
T ss_pred CCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHH-HhCCCeEEEEEeEcCCCCCccceEEEEECCHHH
Confidence 00 000001123479999999999999999999 999999999999998 99999999999999999
Q ss_pred HHHHHHhcC-ceee
Q psy3698 173 YSDAIRAAF-IEVK 185 (534)
Q Consensus 173 A~kAIea~~-veIk 185 (534)
|.+||++.+ ..+.
T Consensus 324 A~~Ai~~lnG~~~~ 337 (352)
T TIGR01661 324 AAMAILSLNGYTLG 337 (352)
T ss_pred HHHHHHHhCCCEEC
Confidence 999999866 4443
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.90 E-value=2.8e-23 Score=225.84 Aligned_cols=146 Identities=18% Similarity=0.249 Sum_probs=125.9
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceecccccC
Q psy3698 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPWAIS 102 (534)
Q Consensus 26 KVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw~ls 102 (534)
.|||||||.++||++|+++|++||+|..+++++|..|+ +++|||||+| +. +|++||+. ....+.++.+.+. |...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~-~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~-~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTR-RSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIM-WSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-CcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEee-cccc
Confidence 59999999999999999999999999999999999988 9999999999 55 89999976 4444777777664 3322
Q ss_pred CCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 103 DSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 103 ds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
+. ........+|||+|||.++++++|+++| +.||.|..|+|..|.+|++||||||.|.+.++|.+||+..+
T Consensus 80 ~~-------~~~~~~~~~vfV~nLp~~~~~~~L~~~F-~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~ln 150 (562)
T TIGR01628 80 DP-------SLRRSGVGNIFVKNLDKSVDNKALFDTF-SKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVN 150 (562)
T ss_pred cc-------cccccCCCceEEcCCCccCCHHHHHHHH-HhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhc
Confidence 21 1122335689999999999999999999 99999999999999999999999999999999999998865
No 9
>KOG4205|consensus
Probab=99.89 E-value=1.4e-23 Score=215.53 Aligned_cols=167 Identities=26% Similarity=0.296 Sum_probs=142.3
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceecccc
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVVPWA 100 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVrPw~ 100 (534)
.++|||||+|+|++|||.|++.|++||+|.+|.+|+|+.++ ++|||+||+| .+ .+.++|......+.++.|.+.+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~-rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTG-RSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCC-CcccccceecCCCcchheeecccccccCCccccceecc
Confidence 78999999999999999999999999999999999999998 9999999999 45 899999887777777777665433
Q ss_pred cCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 101 ISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 101 lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea 179 (534)
..... .........++||||+||.++++++|+++| ++||.|..+.|+.|+ +.++||||||+|.+++++.+++..
T Consensus 84 ~r~~~----~~~~~~~~tkkiFvGG~~~~~~e~~~r~yf-e~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~ 158 (311)
T KOG4205|consen 84 SREDQ----TKVGRHLRTKKIFVGGLPPDTTEEDFKDYF-EQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ 158 (311)
T ss_pred Ccccc----cccccccceeEEEecCcCCCCchHHHhhhh-hccceeEeeEEeecccccccccceeeEeccccccceeccc
Confidence 22111 111122356899999999999999999999 999999999999998 999999999999999999999999
Q ss_pred cCceeeccceeeeeeecccc
Q psy3698 180 AFIEVKSGRICKKLQIDPYL 199 (534)
Q Consensus 180 ~~veIk~~k~~KrVeIkPyL 199 (534)
.+.++. .|.|+++-++
T Consensus 159 ~f~~~~----gk~vevkrA~ 174 (311)
T KOG4205|consen 159 KFHDFN----GKKVEVKRAI 174 (311)
T ss_pred ceeeec----CceeeEeecc
Confidence 887777 4667776654
No 10
>KOG0117|consensus
Probab=99.88 E-value=7.6e-22 Score=206.92 Aligned_cols=148 Identities=19% Similarity=0.185 Sum_probs=123.8
Q ss_pred ccCCCCCCCCCCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe--hHHHHHHHhh-
Q psy3698 8 WEGVLPLRTQFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI--SELVLILGQW- 84 (534)
Q Consensus 8 WsG~lPPR~~~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF--sEsAeaALq~- 84 (534)
|+|..||+. |.||||+||.|+.|++|..+|++.|+|.++++|+|+.+| .+||||||+| +|+|++|++.
T Consensus 75 weg~~p~~G--------~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG-~nRGYAFVtf~~Ke~Aq~Aik~l 145 (506)
T KOG0117|consen 75 WEGPPPPRG--------CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSG-DNRGYAFVTFCTKEEAQEAIKEL 145 (506)
T ss_pred ccCCCCCCC--------ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCC-CCcceEEEEeecHHHHHHHHHHh
Confidence 999999999 999999999999999999999999999999999999999 9999999999 4577777775
Q ss_pred cCCCCc-cccceecccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC--CCCCce
Q psy3698 85 ATEGNL-CGRVEVVPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK--HKYPIG 161 (534)
Q Consensus 85 ssr~i~-~k~VQVrPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk--TG~pKG 161 (534)
++..|+ +|.+.|- -...+.+|||||+|.+.++++|.+.|+..--.|+.|.+..++ ..+.||
T Consensus 146 nn~Eir~GK~igvc----------------~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRG 209 (506)
T KOG0117|consen 146 NNYEIRPGKLLGVC----------------VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRG 209 (506)
T ss_pred hCccccCCCEeEEE----------------EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccc
Confidence 444444 2333332 012357799999999999999999994444578888887776 678899
Q ss_pred EEEEEeCCHHHHHHHHHhc
Q psy3698 162 SGRITFGSTRAYSDAIRAA 180 (534)
Q Consensus 162 fGFVtF~d~EsA~kAIea~ 180 (534)
||||+|.++..|..|-++.
T Consensus 210 FaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 210 FAFVEYESHRAAAMARRKL 228 (506)
T ss_pred eEEEEeecchhHHHHHhhc
Confidence 9999999999998886664
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.87 E-value=1.1e-21 Score=215.37 Aligned_cols=140 Identities=16% Similarity=0.103 Sum_probs=111.6
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCc-cccceec
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNL-CGRVEVV 97 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~-~k~VQVr 97 (534)
...++|||||||++++|++|+++|++||+|..+.+++| .++ ++||||||+| ++ +|++||+. ....+. ++.+.+.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG-~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSG-QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCC-CccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 34599999999999999999999999999999999999 667 9999999999 55 89898886 333332 2222221
Q ss_pred ccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCC-CeEEEEEecCC--CCCCceEEEEEeCCHHHHH
Q psy3698 98 PWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFG-DVVYAGIDTDK--HKYPIGSGRITFGSTRAYS 174 (534)
Q Consensus 98 Pw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG-~Vv~V~I~~Dk--TG~pKGfGFVtF~d~EsA~ 174 (534)
......+|||+|||..+|+++|.+.| ++++ .|+.+.+...+ .++++|||||+|.++++|.
T Consensus 134 ----------------~S~~~~rLFVgNLP~~~TeeeL~eeF-skv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa 196 (578)
T TIGR01648 134 ----------------ISVDNCRLFVGGIPKNKKREEILEEF-SKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAA 196 (578)
T ss_pred ----------------ccccCceeEeecCCcchhhHHHHHHh-hcccCCceEEEEeccccccCccCceEEEEcCCHHHHH
Confidence 01235789999999999999999999 7775 45555443322 6788999999999999999
Q ss_pred HHHHhc
Q psy3698 175 DAIRAA 180 (534)
Q Consensus 175 kAIea~ 180 (534)
+|++..
T Consensus 197 ~AirkL 202 (578)
T TIGR01648 197 MARRKL 202 (578)
T ss_pred HHHHHh
Confidence 999764
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.87 E-value=3e-21 Score=210.05 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=123.7
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceeccc
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPW 99 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw 99 (534)
...+|||+|||.++|+++|+++|++||.|..+.++++. ++ ++||||||.| ++ +|++|++. .+..+.++.+.+...
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g-~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~ 164 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NG-KSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRF 164 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CC-CcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecc
Confidence 34679999999999999999999999999999999885 35 7899999999 66 88888875 455556666655422
Q ss_pred ccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 100 AISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 100 ~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea 179 (534)
...... .........+|||+|||.++|+++|+++| +.||.|+++.|..|.++.+||||||+|.+.++|.+||+.
T Consensus 165 ~~~~~~-----~~~~~~~~~~l~V~nl~~~~tee~L~~~F-~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 165 IKKHER-----EAAPLKKFTNLYVKNLDPSVNEDKLRELF-AKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEE 238 (562)
T ss_pred cccccc-----ccccccCCCeEEEeCCCCcCCHHHHHHHH-HhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 211100 01122345789999999999999999999 999999999999999999999999999999999999987
Q ss_pred cC
Q psy3698 180 AF 181 (534)
Q Consensus 180 ~~ 181 (534)
.+
T Consensus 239 l~ 240 (562)
T TIGR01628 239 MN 240 (562)
T ss_pred hC
Confidence 54
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.86 E-value=9.9e-21 Score=202.27 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=116.7
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccC------------CeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFG------------PVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW 84 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG------------~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ 84 (534)
.....+++|||||||+++|+++|+++|.+++ .|..+++ . +.+|||||+| +. +|.+||++
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~-~~kg~afVeF~~~e~A~~Al~l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------N-KEKNFAFLEFRTVEEATFAMAL 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------C-CCCCEEEEEeCCHHHHhhhhcC
Confidence 3445678999999999999999999999862 2333333 2 4579999999 44 88889987
Q ss_pred cCCCCccccceecccc-cCCC------C-------CCC-----CCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCC
Q psy3698 85 ATEGNLCGRVEVVPWA-ISDS------N-------YSP-----QGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGD 145 (534)
Q Consensus 85 ssr~i~~k~VQVrPw~-lsds------~-------~~~-----~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~ 145 (534)
.+..+.++.+.+.... .... . ... .......+...+|||||||..+|+++|+++| +.||.
T Consensus 243 ~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f-~~~G~ 321 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELL-ESFGD 321 (509)
T ss_pred CCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCC
Confidence 6666666666553111 0000 0 000 0001123456899999999999999999999 89999
Q ss_pred eEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 146 VVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 146 Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
|..+.|+.|+ +|.++|||||+|.+.++|.+||+..+
T Consensus 322 i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~ 358 (509)
T TIGR01642 322 LKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALN 358 (509)
T ss_pred eeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcC
Confidence 9999999997 89999999999999999999998865
No 14
>KOG0148|consensus
Probab=99.84 E-value=3.6e-20 Score=184.94 Aligned_cols=148 Identities=16% Similarity=0.152 Sum_probs=119.6
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceecccccC
Q psy3698 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPWAIS 102 (534)
Q Consensus 26 KVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw~ls 102 (534)
.||||.|..+|+-|.||+.|.+||+|.+++|+||..|+ ++||||||.| .. +|+.||+. .+.=+..|.|. ..|...
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~-KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR-TNWATR 141 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTG-KSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR-TNWATR 141 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCC-cccceeEEeccchHHHHHHHHHhCCeeeccceee-cccccc
Confidence 69999999999999999999999999999999999999 9999999999 44 88888875 33333333332 245543
Q ss_pred CCCCCCC-------CCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHH
Q psy3698 103 DSNYSPQ-------GHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSD 175 (534)
Q Consensus 103 ds~~~~~-------~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~k 175 (534)
....... .-++......+|||||++.-+||++|++.| +.||.|.+|+|-.| +||+||.|+++|+|.+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~F-s~fG~I~EVRvFk~-----qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTF-SPFGPIQEVRVFKD-----QGYAFVRFETKEAAAH 215 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhc-ccCCcceEEEEecc-----cceEEEEecchhhHHH
Confidence 3311100 112233456899999999999999999999 99999999999884 7999999999999999
Q ss_pred HHHhcC
Q psy3698 176 AIRAAF 181 (534)
Q Consensus 176 AIea~~ 181 (534)
||...+
T Consensus 216 AIv~mN 221 (321)
T KOG0148|consen 216 AIVQMN 221 (321)
T ss_pred HHHHhc
Confidence 998765
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.83 E-value=1.5e-19 Score=194.78 Aligned_cols=147 Identities=16% Similarity=0.077 Sum_probs=114.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh---cCCCCccccceecc
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW---ATEGNLCGRVEVVP 98 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~---ssr~i~~k~VQVrP 98 (534)
|+.|||||||+++||++|+++|++||+|..+.++++ ||||||+| ++ +|++|++. ....+.++.+.+..
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 578999999999999999999999999999988753 57999999 55 89999874 45667778777752
Q ss_pred cccCCCCCCCCC--CCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHH
Q psy3698 99 WAISDSNYSPQG--HSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDA 176 (534)
Q Consensus 99 w~lsds~~~~~~--~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kA 176 (534)
............ .........+|||+||+..+|+++|+++| +.||.|..|.|..++ .+|+|||+|.+.++|.+|
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F-~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIF-NPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHA 150 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHH-hccCCEEEEEEEecC---CceEEEEEECCHHHHHHH
Confidence 111110000000 01112234579999999999999999999 999999999987754 247999999999999999
Q ss_pred HHhcC
Q psy3698 177 IRAAF 181 (534)
Q Consensus 177 Iea~~ 181 (534)
|+..+
T Consensus 151 ~~~Ln 155 (481)
T TIGR01649 151 KAALN 155 (481)
T ss_pred HHHhc
Confidence 98765
No 16
>KOG0109|consensus
Probab=99.81 E-value=5.4e-20 Score=185.17 Aligned_cols=157 Identities=21% Similarity=0.263 Sum_probs=127.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceeccccc
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVVPWAI 101 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVrPw~l 101 (534)
-||||||||..+++.+|+.+|++||+|++|.|+|+ ||||.. .+ +++.|++ +....+.+..|.|..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN---------YgFVHiEdktaaedairNLhgYtLhg~nInVea--- 70 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN---------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEA--- 70 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc---------cceEEeecccccHHHHhhcccceecceEEEEEe---
Confidence 48999999999999999999999999999999984 899999 55 7777777 577788887777762
Q ss_pred CCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 102 SDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 102 sds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
...+.....+|+||||.+.++.++|++.| ++||.|+++.|+. +++||.|+-.++|..||+...
T Consensus 71 ---------SksKsk~stkl~vgNis~tctn~ElRa~f-e~ygpviecdivk-------dy~fvh~d~~eda~~air~l~ 133 (346)
T KOG0109|consen 71 ---------SKSKSKASTKLHVGNISPTCTNQELRAKF-EKYGPVIECDIVK-------DYAFVHFDRAEDAVEAIRGLD 133 (346)
T ss_pred ---------ccccCCCccccccCCCCccccCHHHhhhh-cccCCceeeeeec-------ceeEEEEeeccchHHHHhccc
Confidence 11123456789999999999999999999 9999999999976 799999999999999997754
Q ss_pred -ceeeccce-----eeeeeecccccc-ccccccCCC
Q psy3698 182 -IEVKSGRI-----CKKLQIDPYLED-NVCSECQTH 210 (534)
Q Consensus 182 -veIk~~k~-----~KrVeIkPyLeD-q~CdeC~~~ 210 (534)
.++...++ ..|+..+|-|-| ..|..|+.+
T Consensus 134 ~~~~~gk~m~vq~stsrlrtapgmgDq~~cyrcGke 169 (346)
T KOG0109|consen 134 NTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKE 169 (346)
T ss_pred ccccccceeeeeeeccccccCCCCCCHHHheecccc
Confidence 22222221 125667888877 589999853
No 17
>KOG0145|consensus
Probab=99.81 E-value=1e-19 Score=181.02 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=132.8
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceecc
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVP 98 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrP 98 (534)
.....|.|--||..+|+||||.+|...|+|++|+++||+.+| ++.|||||-| .+ +|++|++. ++.++..|.++|.-
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitG-qSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccc-cccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 334579999999999999999999999999999999999999 9999999999 66 99999986 66677777777762
Q ss_pred cccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHH
Q psy3698 99 WAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAI 177 (534)
Q Consensus 99 w~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAI 177 (534)
.+ ++........|||.+||..+|..||.++| +.||.|+-.+|..|. +|.+||.|||.|+.+++|+.||
T Consensus 118 --------AR--PSs~~Ik~aNLYvSGlPktMtqkelE~iF-s~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AI 186 (360)
T KOG0145|consen 118 --------AR--PSSDSIKDANLYVSGLPKTMTQKELEQIF-SPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAI 186 (360)
T ss_pred --------cc--CChhhhcccceEEecCCccchHHHHHHHH-HHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHH
Confidence 21 22333456789999999999999999999 999999999999999 9999999999999999999999
Q ss_pred HhcCceee
Q psy3698 178 RAAFIEVK 185 (534)
Q Consensus 178 ea~~veIk 185 (534)
...+.+..
T Consensus 187 k~lNG~~P 194 (360)
T KOG0145|consen 187 KGLNGQKP 194 (360)
T ss_pred HhccCCCC
Confidence 99875544
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.80 E-value=1.8e-18 Score=185.04 Aligned_cols=157 Identities=11% Similarity=0.097 Sum_probs=117.8
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceeccc
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPW 99 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw 99 (534)
..++|||||||+.+|+++|+++|++||.|..+.++++..++ .++|||||+| .. +|++||+. .+..+.++.+.|...
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g-~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATG-LSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC-CcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45799999999999999999999999999999999998888 8999999999 54 78888864 555566555555321
Q ss_pred ccCCCCCC-------------CC-----CCCCCCCCCceeEeccccCcC----------CHHHHHHHhhhcCCCeEEEEE
Q psy3698 100 AISDSNYS-------------PQ-----GHSTKLEPGKTIFVGALHGRL----------TAQALYNVMNDLFGDVVYAGI 151 (534)
Q Consensus 100 ~lsds~~~-------------~~-----~~s~~~d~~ktIFVGNLP~~~----------TeedLreiF~s~FG~Vv~V~I 151 (534)
........ .. .......+.++|+|.||...- ..++|+++| ++||.|+.|.|
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f-~~~G~v~~v~i 451 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEF-SKYGPLINIVI 451 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHH-HhcCCeeEEEe
Confidence 11000000 00 000111356889999996321 236789999 99999999999
Q ss_pred ecCC----CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 152 DTDK----HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 152 ~~Dk----TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
+.+. ++..+|+|||+|.+.++|.+||++++
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ln 485 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMN 485 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcC
Confidence 8763 45678999999999999999999876
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.79 E-value=1.7e-18 Score=190.53 Aligned_cols=150 Identities=14% Similarity=0.138 Sum_probs=109.9
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCe-eEEeec-CCCCCCCCCCcEEEEEe-hH-HHHHHHhhc---CCCCccccc
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPV-KVEWPQ-GTPESPTAPKAISLDVI-SE-LVLILGQWA---TEGNLCGRV 94 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V-~~v~~~-rD~~Tg~rsRGYAFVtF-sE-sAeaALq~s---sr~i~~k~V 94 (534)
...++|||+|||+++|+++|++.|+++++. +.+.+. .+...+ ++||||||+| ++ +|.+|++.. ...+.++.+
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kg-KnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I 214 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKK-KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVI 214 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccC-ccCceEEEEcCCHHHHHHHHHHhhccceEecCceE
Confidence 346899999999999999999999999753 333332 333334 7899999999 55 777777642 123445555
Q ss_pred eecccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcC--CCeEEEEEecCCCCCCceEEEEEeCCHHH
Q psy3698 95 EVVPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLF--GDVVYAGIDTDKHKYPIGSGRITFGSTRA 172 (534)
Q Consensus 95 QVrPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~F--G~Vv~V~I~~DkTG~pKGfGFVtF~d~Es 172 (534)
.+. |...... .........++|||+||+..+|+++|+++| +.| |.|+.|.+. +|||||+|.+.++
T Consensus 215 ~Vd-wA~p~~~----~d~~~~~~~k~LfVgNL~~~~tee~L~~~F-~~f~~G~I~rV~~~-------rgfAFVeF~s~e~ 281 (578)
T TIGR01648 215 AVD-WAEPEEE----VDEDVMAKVKILYVRNLMTTTTEEIIEKSF-SEFKPGKVERVKKI-------RDYAFVHFEDRED 281 (578)
T ss_pred EEE-eeccccc----ccccccccccEEEEeCCCCCCCHHHHHHHH-HhcCCCceEEEEee-------cCeEEEEeCCHHH
Confidence 554 3322111 111223446889999999999999999999 899 999998764 5799999999999
Q ss_pred HHHHHHhcC-ceee
Q psy3698 173 YSDAIRAAF-IEVK 185 (534)
Q Consensus 173 A~kAIea~~-veIk 185 (534)
|.+||+.++ .+|.
T Consensus 282 A~kAi~~lnG~~i~ 295 (578)
T TIGR01648 282 AVKAMDELNGKELE 295 (578)
T ss_pred HHHHHHHhCCCEEC
Confidence 999998765 4444
No 20
>KOG0127|consensus
Probab=99.78 E-value=1.5e-18 Score=185.58 Aligned_cols=154 Identities=25% Similarity=0.280 Sum_probs=121.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHHhh-cCCCCccccceecccc
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILGQW-ATEGNLCGRVEVVPWA 100 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq~-ssr~i~~k~VQVrPw~ 100 (534)
.-+|.|.||||.+.+++|+.+|++||.|.++.|.+.... +-.|||||.|.+ +|..||+. +...|.+|+|.|- |.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg--klcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVD-WA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG--KLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVD-WA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC--CccceEEEEEeeHHHHHHHHHhccCceecCceeEEe-ee
Confidence 458999999999999999999999999999999877664 344999999944 78888875 5566666666553 33
Q ss_pred cCCCCCCC--------------------------------------------C--------------------CC--C--
Q psy3698 101 ISDSNYSP--------------------------------------------Q--------------------GH--S-- 112 (534)
Q Consensus 101 lsds~~~~--------------------------------------------~--------------------~~--s-- 112 (534)
+....|.. . .. +
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 21100000 0 00 0
Q ss_pred -------------CCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHH
Q psy3698 113 -------------TKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIR 178 (534)
Q Consensus 113 -------------~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIe 178 (534)
...+-.++|||.|||+++|+++|.+.| ++||.|.++.|+.|+ |+.++|.|||.|.+..++..||+
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~f-skFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHF-SKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHH-HhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 000123899999999999999999999 999999999999999 99999999999999999999999
Q ss_pred hcC
Q psy3698 179 AAF 181 (534)
Q Consensus 179 a~~ 181 (534)
++.
T Consensus 353 ~As 355 (678)
T KOG0127|consen 353 AAS 355 (678)
T ss_pred hcC
Confidence 973
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.78 E-value=3.8e-18 Score=183.87 Aligned_cols=152 Identities=14% Similarity=0.102 Sum_probs=116.1
Q ss_pred CccCeEEEeCCCC-CCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 22 ILSNKIFIGGVPW-DTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 22 ~~SrKVFVGNLP~-diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
..+++|||+|||+ .+|+++|+++|++||.|..+.+++++ +|||||+| +. +|++||+. .+..+.++.+.|.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~------~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK------KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 3567999999998 69999999999999999999998852 58999999 55 88888864 6666677766664
Q ss_pred ccccC-----------C-----CCCCCC------CC-----CCCCCCCceeEeccccCcCCHHHHHHHhhhcCCC--eEE
Q psy3698 98 PWAIS-----------D-----SNYSPQ------GH-----STKLEPGKTIFVGALHGRLTAQALYNVMNDLFGD--VVY 148 (534)
Q Consensus 98 Pw~ls-----------d-----s~~~~~------~~-----s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~--Vv~ 148 (534)
.-... + ..+... .+ .....+.++|||+|||..+|+++|+++| +.||. |+.
T Consensus 347 ~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF-~~~G~~~i~~ 425 (481)
T TIGR01649 347 PSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELF-AENGVHKVKK 425 (481)
T ss_pred EcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHH-HhcCCccceE
Confidence 21110 0 001000 00 0011356799999999999999999999 89998 888
Q ss_pred EEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 149 AGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 149 V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
+++..++++ .+|+|||+|.+.++|.+||...+
T Consensus 426 ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln 457 (481)
T TIGR01649 426 FKFFPKDNE-RSKMGLLEWESVEDAVEALIALN 457 (481)
T ss_pred EEEecCCCC-cceeEEEEcCCHHHHHHHHHHhc
Confidence 887654444 58999999999999999999866
No 22
>KOG0131|consensus
Probab=99.78 E-value=5e-19 Score=168.62 Aligned_cols=152 Identities=21% Similarity=0.248 Sum_probs=125.8
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceeccc
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPW 99 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw 99 (534)
...+||||||+..++|+.|.++|-+.|+|+.+.+.+|+.+. .++|||||+| +| +|+-|++. +.-.+-+|++.+...
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~-~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQ-KHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcc-cccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45799999999999999999999999999999999999987 8999999999 77 88887775 222333455555421
Q ss_pred ccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEE-EEecCC-CCCCceEEEEEeCCHHHHHHHH
Q psy3698 100 AISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYA-GIDTDK-HKYPIGSGRITFGSTRAYSDAI 177 (534)
Q Consensus 100 ~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V-~I~~Dk-TG~pKGfGFVtF~d~EsA~kAI 177 (534)
. ......+-..+||||||.+.++|..|.+.| +.||.+... .|++|+ +|.++|||||.|++.+++.+||
T Consensus 87 s---------~~~~nl~vganlfvgNLd~~vDe~~L~dtF-safG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai 156 (203)
T KOG0131|consen 87 S---------AHQKNLDVGANLFVGNLDPEVDEKLLYDTF-SAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAI 156 (203)
T ss_pred c---------cccccccccccccccccCcchhHHHHHHHH-HhccccccCCcccccccCCCCCCCeEEechhHHHHHHHH
Confidence 1 111223445889999999999999999999 999988765 689998 8999999999999999999999
Q ss_pred HhcCceee
Q psy3698 178 RAAFIEVK 185 (534)
Q Consensus 178 ea~~veIk 185 (534)
++++-++-
T Consensus 157 ~s~ngq~l 164 (203)
T KOG0131|consen 157 GSMNGQYL 164 (203)
T ss_pred HHhccchh
Confidence 99875554
No 23
>KOG0124|consensus
Probab=99.76 E-value=7.6e-19 Score=181.00 Aligned_cols=156 Identities=17% Similarity=0.245 Sum_probs=126.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe--hHHHHHHHh-hcCCCCccccceec-cc
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI--SELVLILGQ-WATEGNLCGRVEVV-PW 99 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF--sEsAeaALq-~ssr~i~~k~VQVr-Pw 99 (534)
-|+||||.|.+++.|+.||..|..||+|+++.+..|..|+ ++||||||+| .|+++-|++ +++.-+.+|.++|. |-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~-kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATG-KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccc-cccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 3789999999999999999999999999999999999999 9999999999 776666665 57777777777764 21
Q ss_pred ccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHH
Q psy3698 100 AISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIR 178 (534)
Q Consensus 100 ~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIe 178 (534)
......-....-......-.+|||..++.+++|+||+..| +.||+|++|.+.+++ .+..|||||++|.+.++...||.
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVF-EAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHH-HhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 1110000000000011234789999999999999999999 999999999999999 67789999999999999999999
Q ss_pred hcC
Q psy3698 179 AAF 181 (534)
Q Consensus 179 a~~ 181 (534)
..+
T Consensus 271 sMN 273 (544)
T KOG0124|consen 271 SMN 273 (544)
T ss_pred hcc
Confidence 877
No 24
>KOG0117|consensus
Probab=99.75 E-value=1.4e-17 Score=175.22 Aligned_cols=155 Identities=15% Similarity=0.224 Sum_probs=111.9
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCC-eeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCC--Cccccc
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGP-VKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEG--NLCGRV 94 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~-V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~--i~~k~V 94 (534)
.+.-|+|||||||...++++|.+.|++.++ |+++.+..+.....++||||||+| +. +|..+-+. .... +-+..+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 355689999999999999999999999998 555666665555558999999999 54 44333332 1111 222233
Q ss_pred eecccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHH
Q psy3698 95 EVVPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYS 174 (534)
Q Consensus 95 QVrPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~ 174 (534)
.|. |.-.... . +.......+.|||.||+.++|+|.|+++| ++||.|+.|+.++ -||||.|.++++|+
T Consensus 241 tVd-WAep~~e--~--ded~ms~VKvLYVRNL~~~tTeE~lk~~F-~~~G~veRVkk~r-------DYaFVHf~eR~dav 307 (506)
T KOG0117|consen 241 TVD-WAEPEEE--P--DEDTMSKVKVLYVRNLMESTTEETLKKLF-NEFGKVERVKKPR-------DYAFVHFAEREDAV 307 (506)
T ss_pred eee-ccCcccC--C--ChhhhhheeeeeeeccchhhhHHHHHHHH-HhccceEEeeccc-------ceeEEeecchHHHH
Confidence 333 4322111 1 11123446889999999999999999999 8999999998765 49999999999999
Q ss_pred HHHHhcC-ceeeccc
Q psy3698 175 DAIRAAF-IEVKSGR 188 (534)
Q Consensus 175 kAIea~~-veIk~~k 188 (534)
+|++..+ .+|....
T Consensus 308 kAm~~~ngkeldG~~ 322 (506)
T KOG0117|consen 308 KAMKETNGKELDGSP 322 (506)
T ss_pred HHHHHhcCceecCce
Confidence 9999876 4454433
No 25
>KOG0127|consensus
Probab=99.74 E-value=1.4e-17 Score=178.36 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=121.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceeccccc
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPWAI 101 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw~l 101 (534)
.+|||++||++++.++|.++|+.+|+|..+.++.+..++ .+||||||+| -+ ++++|+++ ....+.++.+.+.+...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~-~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSS-EKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcc-cccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 689999999999999999999999999999999999887 9999999999 44 88888887 22233444433332222
Q ss_pred CCCCC---------CC-----CCCC-C-CCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEE
Q psy3698 102 SDSNY---------SP-----QGHS-T-KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRI 165 (534)
Q Consensus 102 sds~~---------~~-----~~~s-~-~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFV 165 (534)
..+.- +. ..+. . ...+.-+|.|.|||+.+...+|+.+| +.||.|+.|.|++.+.|+-.|||||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vF-s~~G~V~Ei~IP~k~dgklcGFaFV 163 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVF-SNFGKVVEIVIPRKKDGKLCGFAFV 163 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHH-hhcceEEEEEcccCCCCCccceEEE
Confidence 11111 00 0000 0 01346789999999999999999999 9999999999998776666799999
Q ss_pred EeCCHHHHHHHHHhcC
Q psy3698 166 TFGSTRAYSDAIRAAF 181 (534)
Q Consensus 166 tF~d~EsA~kAIea~~ 181 (534)
+|.+..+|.+||+..+
T Consensus 164 ~fk~~~dA~~Al~~~N 179 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFN 179 (678)
T ss_pred EEeeHHHHHHHHHhcc
Confidence 9999999999999865
No 26
>KOG0145|consensus
Probab=99.72 E-value=6.3e-17 Score=161.33 Aligned_cols=161 Identities=18% Similarity=0.201 Sum_probs=121.3
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCc---ccc
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNL---CGR 93 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~---~k~ 93 (534)
.+.+....|||.|||..+|..||.++|++||.|.-.+|..|..|+ .+||.|||.| +. +|++||+....... ..+
T Consensus 122 s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg-~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tep 200 (360)
T KOG0145|consen 122 SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTG-LSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEP 200 (360)
T ss_pred hhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccc-eecceeEEEecchhHHHHHHHhccCCCCCCCCCC
Confidence 345566789999999999999999999999999999999999998 9999999999 44 78888775110000 011
Q ss_pred ceec--------------------c--------------cccC--------CCCCCC-C----------CCCCCCCCCce
Q psy3698 94 VEVV--------------------P--------------WAIS--------DSNYSP-Q----------GHSTKLEPGKT 120 (534)
Q Consensus 94 VQVr--------------------P--------------w~ls--------ds~~~~-~----------~~s~~~d~~kt 120 (534)
+.|+ | .++. ...+.. . .-........+
T Consensus 201 ItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~c 280 (360)
T KOG0145|consen 201 ITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWC 280 (360)
T ss_pred eEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeE
Confidence 1110 0 0000 000000 0 00001123589
Q ss_pred eEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 121 IFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 121 IFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
|||.||..+.+|.-|.++| ..||.|..|+|.+|. +.+-||||||++.+.++|..||.+.+
T Consensus 281 iFvYNLspd~de~~LWQlF-gpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLN 341 (360)
T KOG0145|consen 281 IFVYNLSPDADESILWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 341 (360)
T ss_pred EEEEecCCCchHhHHHHHh-CcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhc
Confidence 9999999999999999999 999999999999998 79999999999999999999999866
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.70 E-value=3.9e-16 Score=165.15 Aligned_cols=170 Identities=18% Similarity=0.119 Sum_probs=120.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceecccc
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPWA 100 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw~ 100 (534)
.++|||+|||.++||++|+++|++||.|..+.++++..++ +++|||||+| +. +|.+|++. .+..+.++.+.|....
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g-~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETG-RSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-ccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6899999999999999999999999999999999998887 8999999999 44 78878764 4444444444443100
Q ss_pred cC------------------------------------CCC-------------------C---------CC-----C--
Q psy3698 101 IS------------------------------------DSN-------------------Y---------SP-----Q-- 109 (534)
Q Consensus 101 ls------------------------------------ds~-------------------~---------~~-----~-- 109 (534)
.. ... . .. .
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T TIGR01622 265 DSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL 344 (457)
T ss_pred CCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccc
Confidence 00 000 0 00 0
Q ss_pred --------CCCC-CCCCCceeEeccccCcCC----------HHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCH
Q psy3698 110 --------GHST-KLEPGKTIFVGALHGRLT----------AQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGST 170 (534)
Q Consensus 110 --------~~s~-~~d~~ktIFVGNLP~~~T----------eedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~ 170 (534)
.... ...+.+.|+|.||-...+ .+||++.| ++||.|+.|.|.. ..+.|++||.|.+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~-~k~G~v~~v~v~~---~~~~G~~fV~F~~~ 420 (457)
T TIGR01622 345 AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEEC-SKYGGVVHIYVDT---KNSAGKIYLKFSSV 420 (457)
T ss_pred ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHH-HhcCCeeEEEEeC---CCCceeEEEEECCH
Confidence 0000 113457899999955544 36799999 9999999998864 23679999999999
Q ss_pred HHHHHHHHhcCceeeccceeeeeeecccccc
Q psy3698 171 RAYSDAIRAAFIEVKSGRICKKLQIDPYLED 201 (534)
Q Consensus 171 EsA~kAIea~~veIk~~k~~KrVeIkPyLeD 201 (534)
++|.+||++.+...-. .+.|++..+-++
T Consensus 421 e~A~~A~~~lnGr~f~---gr~i~~~~~~~~ 448 (457)
T TIGR01622 421 DAALAAFQALNGRYFG---GKMITAAFVVND 448 (457)
T ss_pred HHHHHHHHHhcCcccC---CeEEEEEEEcHH
Confidence 9999999986632222 235666555333
No 28
>KOG0123|consensus
Probab=99.70 E-value=1.5e-16 Score=167.32 Aligned_cols=145 Identities=18% Similarity=0.259 Sum_probs=121.1
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceecccccC
Q psy3698 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPWAIS 102 (534)
Q Consensus 26 KVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw~ls 102 (534)
-|||| +++||..|.++|+++|+|+.+.+.+|. | +-|||||.| .. +|++||+. +-..+.++++.+. |...
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t---slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim-~s~r 74 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T---SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIM-WSQR 74 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C---ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEee-hhcc
Confidence 48999 999999999999999999999999998 6 799999999 55 99999986 4445566666554 3322
Q ss_pred CCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCc
Q psy3698 103 DSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFI 182 (534)
Q Consensus 103 ds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~v 182 (534)
|.. . |||.||+..++..+|.++| +.||+|++|++.+|..| +||| ||.|+++++|.+||+..+-
T Consensus 75 d~~-------------~-~~i~nl~~~~~~~~~~d~f-~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng 137 (369)
T KOG0123|consen 75 DPS-------------L-VFIKNLDESIDNKSLYDTF-SEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNG 137 (369)
T ss_pred CCc-------------e-eeecCCCcccCcHHHHHHH-HhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcC
Confidence 211 1 9999999999999999999 99999999999999988 9999 9999999999999998775
Q ss_pred eeeccceeeeeeeccc
Q psy3698 183 EVKSGRICKKLQIDPY 198 (534)
Q Consensus 183 eIk~~k~~KrVeIkPy 198 (534)
++-. .|+|.+.++
T Consensus 138 ~ll~---~kki~vg~~ 150 (369)
T KOG0123|consen 138 MLLN---GKKIYVGLF 150 (369)
T ss_pred cccC---CCeeEEeec
Confidence 5543 355555554
No 29
>KOG0147|consensus
Probab=99.70 E-value=1.1e-17 Score=179.48 Aligned_cols=168 Identities=22% Similarity=0.208 Sum_probs=137.2
Q ss_pred CCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccce
Q psy3698 18 FSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVE 95 (534)
Q Consensus 18 ~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQ 95 (534)
..++.+.|+||+-.|+..+++-+|.++|+.+|+|..+.++.|+.++ ++||.|||+| .+ +|-.||..++..+-+.+|.
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~-rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~ 251 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSR-RSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVI 251 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccch-hhcceeEEEEecccchhhHhhhcCCcccCceeE
Confidence 4567788999999999999999999999999999999999999988 8999999999 55 9999999888888888887
Q ss_pred ecccccCC---CCCCCC-CCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCH
Q psy3698 96 VVPWAISD---SNYSPQ-GHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGST 170 (534)
Q Consensus 96 VrPw~lsd---s~~~~~-~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~ 170 (534)
+.+-.... .+.... ....-..+-..|+||||+++++|++|+.+| +.||.|..|.+..|. ||..||||||+|.+.
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~if-epfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIF-EPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhc-cCcccceeeeeccccccccccCcceEEEecH
Confidence 76432211 111100 011112233449999999999999999999 999999999999998 999999999999999
Q ss_pred HHHHHHHHhcC-ceeecc
Q psy3698 171 RAYSDAIRAAF-IEVKSG 187 (534)
Q Consensus 171 EsA~kAIea~~-veIk~~ 187 (534)
++|.+|++..+ ++|.+.
T Consensus 331 ~~ar~a~e~lngfelAGr 348 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGR 348 (549)
T ss_pred HHHHHHHHHhccceecCc
Confidence 99999987766 455443
No 30
>KOG0123|consensus
Probab=99.66 E-value=4.8e-16 Score=163.54 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=122.2
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceecccccCC
Q psy3698 27 IFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPWAISD 103 (534)
Q Consensus 27 VFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw~lsd 103 (534)
|||.||+.++|..+|.++|+.||+|++|+++.|.. -+||| ||.| +| +|++|+++ ++..+.++.+-+-+..-..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~---g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN---GSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC---Cceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 99999999999999999999999999999999876 38999 9999 77 99999987 5566666666554322111
Q ss_pred CCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 104 SNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 104 s~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
. ....... .......++|.+++.+++++.|.++| ..||.|..+.++.|..+.++|||||.|.++++|.+|++..+
T Consensus 155 e-r~~~~~~-~~~~~t~v~vk~~~~~~~~~~l~~~f-~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 155 E-REAPLGE-YKKRFTNVYVKNLEEDSTDEELKDLF-SAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred h-hcccccc-hhhhhhhhheeccccccchHHHHHhh-cccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhcc
Confidence 0 0000111 23345679999999999999999999 99999999999999988899999999999999999999876
No 31
>KOG0129|consensus
Probab=99.63 E-value=4.5e-16 Score=166.30 Aligned_cols=56 Identities=39% Similarity=0.745 Sum_probs=53.9
Q ss_pred eecccCCCCCcCCCccceeeeEEcCCCCCCchHHHHHhhccccceEEEecCcccccc
Q psy3698 474 TWEGVLPLRTQFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMSS 530 (534)
Q Consensus 474 ~w~g~lp~~~~~~~~~~s~kvf~gg~p~d~~e~~l~~~f~~~g~~~~~~~~~~~~~~ 530 (534)
||+|.||+|. +..+.||+|||||||||||||++|.++|++||+|+||||.|++.++
T Consensus 243 ~~~~~~~~~~-~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~ 298 (520)
T KOG0129|consen 243 TWSGSLPPRG-YRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRG 298 (520)
T ss_pred hhccccCCCC-CCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccc
Confidence 9999999998 7899999999999999999999999999999999999999998765
No 32
>KOG0148|consensus
Probab=99.61 E-value=2.5e-15 Score=150.57 Aligned_cols=126 Identities=19% Similarity=0.200 Sum_probs=101.5
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehHHHHHHHhhcCCCCccccceeccccc
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISELVLILGQWATEGNLCGRVEVVPWAI 101 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsEsAeaALq~ssr~i~~k~VQVrPw~l 101 (534)
...|+||||||..++||+-|..+|.+.|.|..++++.|... +..+..
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~---------------v~wa~~------------------ 50 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELK---------------VNWATA------------------ 50 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhc---------------cccccC------------------
Confidence 35688999999999999999999999999999998887431 111111
Q ss_pred CCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhc
Q psy3698 102 SDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAA 180 (534)
Q Consensus 102 sds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~ 180 (534)
..+ ..........-||||.|...++.++|++.| .+||+|.+++|++|. |+++||||||.|-++++|+.||+.+
T Consensus 51 -p~n----Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF-~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 51 -PGN----QSKPTSNQHFHVFVGDLSPEIDNEKLREAF-APFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred -ccc----CCCCccccceeEEehhcchhcchHHHHHHh-ccccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 100 000111224679999999999999999999 999999999999998 9999999999999999999999998
Q ss_pred Cceeec
Q psy3698 181 FIEVKS 186 (534)
Q Consensus 181 ~veIk~ 186 (534)
+.+.-.
T Consensus 125 nGqWlG 130 (321)
T KOG0148|consen 125 NGQWLG 130 (321)
T ss_pred CCeeec
Confidence 855443
No 33
>KOG0146|consensus
Probab=99.58 E-value=1.6e-14 Score=144.79 Aligned_cols=63 Identities=22% Similarity=0.292 Sum_probs=60.8
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+|||..||.+..+.||.++| -.||.|+++++-.|+ |..+|.||||.|+|..+++.||.+.+
T Consensus 285 GCNlFIYHLPQEFgDaEliQmF-~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMN 348 (371)
T KOG0146|consen 285 GCNLFIYHLPQEFGDAELIQMF-LPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN 348 (371)
T ss_pred cceEEEEeCchhhccHHHHHHh-ccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhc
Confidence 5889999999999999999999 999999999999998 99999999999999999999999976
No 34
>KOG0144|consensus
Probab=99.52 E-value=2.9e-14 Score=149.94 Aligned_cols=63 Identities=24% Similarity=0.334 Sum_probs=60.6
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
...+||++||.+.-+.+|...| ..||.|..+++.+|+ ++.+|.||||.|++..+|..||.+.+
T Consensus 424 GanlfiyhlPqefgdq~l~~~f-~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amn 487 (510)
T KOG0144|consen 424 GANLFIYHLPQEFGDQDLIATF-QPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMN 487 (510)
T ss_pred ccceeeeeCchhhhhHHHHHHh-ccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhc
Confidence 4789999999999999999999 999999999999999 99999999999999999999999876
No 35
>KOG0149|consensus
Probab=99.50 E-value=2.1e-14 Score=141.66 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=67.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHHhhcCCCCccccceec
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq~ssr~i~~k~VQVr 97 (534)
-.|||||||+|+++.|+|+++|++||+|+++.|+.|+.|+ ++||||||+|.| +|.+|++.....|.+|...+.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~-rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcn 86 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTG-RSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCN 86 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCc-cccceeeEEeecHHHHHHHhcCCCCcccccccccc
Confidence 4699999999999999999999999999999999999999 999999999944 999999998888888776654
No 36
>KOG0110|consensus
Probab=99.46 E-value=2.3e-13 Score=149.80 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=118.2
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCC--CCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPES--PTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~T--g~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
...+|||.||++++|.++|...|...|.|+.+.|.+.+.. ...|.|||||+| +. +|++|++. .+..+.+..++++
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3445999999999999999999999999998876654432 224779999999 55 88888887 4467777766665
Q ss_pred ccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHH
Q psy3698 98 PWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDA 176 (534)
Q Consensus 98 Pw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kA 176 (534)
--. ..................+|.|.|||+..+-.+++++| ..||.|..|+|+.-. .+..+|||||+|-+.++|..|
T Consensus 594 ~S~-~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF-~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA 671 (725)
T KOG0110|consen 594 ISE-NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLF-TAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNA 671 (725)
T ss_pred ecc-CccccccccccccccccceeeeeccchHHHHHHHHHHH-hcccceeeeccchhhcchhhccceeeeccCcHHHHHH
Confidence 111 01000000001111224689999999999999999999 999999999998864 566799999999999999999
Q ss_pred HHhcC
Q psy3698 177 IRAAF 181 (534)
Q Consensus 177 Iea~~ 181 (534)
+++..
T Consensus 672 ~~al~ 676 (725)
T KOG0110|consen 672 FDALG 676 (725)
T ss_pred HHhhc
Confidence 97754
No 37
>KOG0105|consensus
Probab=99.43 E-value=1.3e-12 Score=125.56 Aligned_cols=150 Identities=21% Similarity=0.223 Sum_probs=108.2
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHHhh-cCCCCccccceec-
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILGQW-ATEGNLCGRVEVV- 97 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq~-ssr~i~~k~VQVr- 97 (534)
..+|+|||||||.+|-|.+|.++|-+||.|..+.+...+ ..-.||||+|.+ +|+.||.. ......+-.+.|.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~----g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP----GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC----CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 357999999999999999999999999999988775543 345799999943 88888875 2222222222221
Q ss_pred cccc---CCC--CCCCC------CC----CCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceE
Q psy3698 98 PWAI---SDS--NYSPQ------GH----STKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGS 162 (534)
Q Consensus 98 Pw~l---sds--~~~~~------~~----s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGf 162 (534)
|.-- .+. ++... .. ...-.....|.|.+||..-+++||++.| .+-|.|+.+.+.+| |.
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHm-ReaGdvCfadv~rD------g~ 152 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHM-REAGDVCFADVQRD------GV 152 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHH-HhhCCeeeeeeecc------cc
Confidence 1000 000 00000 00 0011235789999999999999999999 89999999998875 58
Q ss_pred EEEEeCCHHHHHHHHHhcCc
Q psy3698 163 GRITFGSTRAYSDAIRAAFI 182 (534)
Q Consensus 163 GFVtF~d~EsA~kAIea~~v 182 (534)
|.|.|..+|++.-||.++.-
T Consensus 153 GvV~~~r~eDMkYAvr~ld~ 172 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLDD 172 (241)
T ss_pred eeeeeeehhhHHHHHHhhcc
Confidence 99999999999999988653
No 38
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.41 E-value=2.2e-12 Score=120.29 Aligned_cols=152 Identities=20% Similarity=0.255 Sum_probs=110.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceecccc
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPWA 100 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw~ 100 (534)
.++|||||||+++|+++|+++|.+||.|..+.+..|+.++ ++||||||+| .+ ++..|++. ....+.++.+.+..-.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~-~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETG-KSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccC-ccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999998778 9999999999 66 88888876 3356666666665321
Q ss_pred ----cCCCCC-------C---CCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEE
Q psy3698 101 ----ISDSNY-------S---PQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRI 165 (534)
Q Consensus 101 ----lsds~~-------~---~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFV 165 (534)
...... . .............+++++++..++..++...| ..+|.+..+.+.... ......+.++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (306)
T COG0724 194 PASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLF-KSRGDIVRASLPPSKDGKIPKSRSFV 272 (306)
T ss_pred cccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhc-cccccceeeeccCCCCCccccccccc
Confidence 100000 0 00112233456889999999999999999999 999999777776655 3334555555
Q ss_pred EeCCHHHHHHHH
Q psy3698 166 TFGSTRAYSDAI 177 (534)
Q Consensus 166 tF~d~EsA~kAI 177 (534)
.+.....+..++
T Consensus 273 ~~~~~~~~~~~~ 284 (306)
T COG0724 273 GNEASKDALESN 284 (306)
T ss_pred chhHHHhhhhhh
Confidence 554444444443
No 39
>KOG4211|consensus
Probab=99.41 E-value=3.3e-12 Score=136.37 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=113.8
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceeccc
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVVPW 99 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVrPw 99 (534)
...--|=+.+|||++|++||.++|+.++ |....+.+ .++ +..|=|||+| +| ++++||++....|..+-|+|-+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~G-r~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNG-RPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCC-CcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 3345577899999999999999999987 55544444 346 8889999999 77 99999999777777777777543
Q ss_pred ccCCCCCCC-CCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEE-EEEecCCCCCCceEEEEEeCCHHHHHHHH
Q psy3698 100 AISDSNYSP-QGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVY-AGIDTDKHKYPIGSGRITFGSTRAYSDAI 177 (534)
Q Consensus 100 ~lsds~~~~-~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~-V~I~~DkTG~pKGfGFVtF~d~EsA~kAI 177 (534)
...+..... +.........-.|-+.+||+.+|++||.++| +----|.. +.++.|+.+++-|-|||.|++.+.|++||
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FF-aGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFF-AGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHh-cCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 222222221 0111111355678899999999999999999 44433433 33567778889999999999999999999
Q ss_pred Hhc
Q psy3698 178 RAA 180 (534)
Q Consensus 178 ea~ 180 (534)
+..
T Consensus 163 ~rh 165 (510)
T KOG4211|consen 163 GRH 165 (510)
T ss_pred HHH
Confidence 873
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.41 E-value=6.2e-13 Score=123.04 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=67.9
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
...+++|||+|||+++||++|+++|++||+|..+.+++|..++ ++||||||+| ++ +|++||+. +...+.++.++|.
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETG-RSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCC-CcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999999999988 9999999999 55 88888874 6777888887775
No 41
>KOG0149|consensus
Probab=99.40 E-value=3.7e-13 Score=132.95 Aligned_cols=69 Identities=28% Similarity=0.324 Sum_probs=62.9
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceeec
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVKS 186 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk~ 186 (534)
.-.+||||+|++.++.++|+++| ++||+|+++.|+.|+ ++++||||||+|.+.++|.+|.+..+=.|+.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yF-eqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdG 80 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDG 80 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHH-HHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccc
Confidence 34789999999999999999999 999999999999999 9999999999999999999999876644443
No 42
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.36 E-value=3e-12 Score=118.47 Aligned_cols=69 Identities=26% Similarity=0.323 Sum_probs=62.9
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
....+|||+|||..+|+++|+++| ++||.|..+.|+.|+ ++++||||||+|.+.++|++||+..+ .+|.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~ 102 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN 102 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-hcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345789999999999999999999 899999999999998 99999999999999999999998754 4554
No 43
>KOG4212|consensus
Probab=99.31 E-value=1.5e-09 Score=114.95 Aligned_cols=154 Identities=16% Similarity=0.086 Sum_probs=115.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhh-ccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceecc--
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFS-QFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVP-- 98 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~Fs-qFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrP-- 98 (534)
|.|||.|||++...++|+++|. +.|+|..|.+..|.. + ++||+|.|+| .+ .+++|++. .+..+.+|++.++.
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-G-K~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-G-KARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-C-CcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 4599999999999999999996 689999999988875 6 8999999999 44 88888876 22223322222110
Q ss_pred ---------------------------cccC----------CCCCCCC--------------------------------
Q psy3698 99 ---------------------------WAIS----------DSNYSPQ-------------------------------- 109 (534)
Q Consensus 99 ---------------------------w~ls----------ds~~~~~-------------------------------- 109 (534)
|... ++.+...
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 0000 0000000
Q ss_pred ----CCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 110 ----GHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 110 ----~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
...-...-..++||+||...+....|++.| ..-|.|..+.+-+||-|.++||+.+.|+..-.+..||.+..
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvf-gmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVF-GMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHh-ccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhc
Confidence 000001124789999999999999999999 99999999999999999999999999999999999998866
No 44
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.27 E-value=1.7e-11 Score=95.95 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=57.1
Q ss_pred eEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 121 IFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 121 IFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
|||+|||..+|+++|+++| +.||.|..+.+..+..+.++|+|||+|.++++|++||+...
T Consensus 1 l~v~nlp~~~t~~~l~~~f-~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~ 60 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFF-SQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELN 60 (70)
T ss_dssp EEEESETTTSSHHHHHHHH-HTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEcCCCCcCCHHHHHHHH-HHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcC
Confidence 7999999999999999999 88999999999998889999999999999999999999655
No 45
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.24 E-value=1.1e-11 Score=97.02 Aligned_cols=63 Identities=22% Similarity=0.154 Sum_probs=53.7
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcc
Q psy3698 27 IFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLC 91 (534)
Q Consensus 27 VFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~ 91 (534)
|||+|||.++|+++|+++|++||.|..+.++.+ .++ +++|||||+| ++ +|++|++. .+..+.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~-~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSG-KSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTS-SEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccc-cccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 799999999999999999999999999999887 444 7899999999 66 88888884 4444443
No 46
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.19 E-value=5.8e-11 Score=124.35 Aligned_cols=65 Identities=25% Similarity=0.382 Sum_probs=61.2
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
....+|||+|||.++|+++|+++| +.||.|+.|+|+.|+ ++++||||||+|.++++|.+||+..+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF-~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~Ln 170 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALF-RTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLN 170 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcC
Confidence 456899999999999999999999 999999999999997 99999999999999999999998754
No 47
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.13 E-value=1.9e-10 Score=91.52 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=58.1
Q ss_pred eEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceeec
Q psy3698 121 IFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVKS 186 (534)
Q Consensus 121 IFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk~ 186 (534)
|||+|||..+++++|+++| +.||.|..+.+..++.+.++|+|||+|.+.++|.+|++... ..+.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f-~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFF-SRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHC-TTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHH-HhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 7999999999999999999 89999999999998778999999999999999999999977 55553
No 48
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.10 E-value=2e-10 Score=115.94 Aligned_cols=72 Identities=14% Similarity=0.032 Sum_probs=64.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceeccc
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVVPW 99 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVrPw 99 (534)
.++|||||||+++||++|+++|+.||+|..+.+++|+. ++|||||+| .+ +++.||.+++..+.++.+.|.+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~----~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE----RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC----CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEec
Confidence 58999999999999999999999999999999998853 469999999 55 99999988999999999988753
No 49
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.09 E-value=1.4e-10 Score=92.31 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=53.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcC-CCCcccc
Q psy3698 27 IFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWAT-EGNLCGR 93 (534)
Q Consensus 27 VFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ss-r~i~~k~ 93 (534)
|||+|||+++|+++|+++|+.||.|..+.+.+++. + +++|+|||+| ++ +|++|++... ..+.++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~-~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-G-QSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-S-SEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-c-ccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 79999999999999999999999999999888866 6 8899999999 66 8999998754 4444443
No 50
>smart00362 RRM_2 RNA recognition motif.
Probab=99.06 E-value=1.2e-09 Score=83.59 Aligned_cols=64 Identities=27% Similarity=0.340 Sum_probs=58.1
Q ss_pred eeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 120 TIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 120 tIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
+|||+|||..+++++|+++| +.||.|..+.+..++ +.++|+|||+|.+.++|.+|++... ..+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~-~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~ 65 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELF-SKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLG 65 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHH-HhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEEC
Confidence 58999999999999999999 899999999999877 7889999999999999999998765 4443
No 51
>KOG0125|consensus
Probab=99.06 E-value=2.7e-10 Score=117.16 Aligned_cols=84 Identities=24% Similarity=0.324 Sum_probs=70.2
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC--------ceeecc
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF--------IEVKSG 187 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~--------veIk~~ 187 (534)
+..++|+|.|+|+...|.||+.+| ++||+|.+|.|+.+..| +||||||+|++.++|++|=++.+ |||...
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF-~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMF-EKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHH-HhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 455889999999999999999999 99999999999998777 89999999999999999977655 555542
Q ss_pred --ce-eeeeeecccccc
Q psy3698 188 --RI-CKKLQIDPYLED 201 (534)
Q Consensus 188 --k~-~KrVeIkPyLeD 201 (534)
++ +||+++-||..+
T Consensus 172 TarV~n~K~~v~p~~~g 188 (376)
T KOG0125|consen 172 TARVHNKKKKVLPYPNG 188 (376)
T ss_pred chhhccCCcccCCCccc
Confidence 33 457777787433
No 52
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.02 E-value=6.9e-10 Score=110.88 Aligned_cols=74 Identities=11% Similarity=0.027 Sum_probs=66.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceeccccc
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVVPWAI 101 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVrPw~l 101 (534)
..+|||+||++++||++|+++|+.||+|..+.+++|.. .+|||||+| .+ +++.||.+++..+..+.|.|.||..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e----t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE----YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC----cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 46899999999999999999999999999999999853 458999999 55 9999999999999999999998763
No 53
>KOG4206|consensus
Probab=99.01 E-value=8e-09 Score=101.90 Aligned_cols=147 Identities=18% Similarity=0.138 Sum_probs=101.6
Q ss_pred eEEEeCCCCCCCHHHHHH----HhhccCCeeEEeecCCCCCCCCCCcEEEEEe-h-HHHHHHHhh-cCCCCccccceecc
Q psy3698 26 KIFIGGVPWDTPEYLLLT----VFSQFGPVKVEWPQGTPESPTAPKAISLDVI-S-ELVLILGQW-ATEGNLCGRVEVVP 98 (534)
Q Consensus 26 KVFVGNLP~diTEeeLre----~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-s-EsAeaALq~-ssr~i~~k~VQVrP 98 (534)
+|||.||+..+..++|+. +|++||+|+.+...+. . +.||=|||+| . ++|-.|+.. .+...-+|.+++..
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~-KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---P-KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---C-CccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 999999999999999998 9999999998877663 3 7799999999 3 344444433 11111111111100
Q ss_pred ---------------------------ccc---CCCC---CC---CCCC----CCCCCCCceeEeccccCcCCHHHHHHH
Q psy3698 99 ---------------------------WAI---SDSN---YS---PQGH----STKLEPGKTIFVGALHGRLTAQALYNV 138 (534)
Q Consensus 99 ---------------------------w~l---sds~---~~---~~~~----s~~~d~~ktIFVGNLP~~~TeedLrei 138 (534)
... .+.+ +. ...+ .....+...+|+-|||..++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 000 0000 00 0000 122456789999999999999999999
Q ss_pred hhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 139 MNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 139 F~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
| ..|..-..++++.. -+|.|||+|.+...+..|.++..
T Consensus 167 f-~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq 204 (221)
T KOG4206|consen 167 F-EQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQ 204 (221)
T ss_pred H-hhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhc
Confidence 9 89999999887662 26899999999988888877754
No 54
>KOG0113|consensus
Probab=99.00 E-value=5.4e-10 Score=113.86 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=63.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
=++|||+-|+++++|..|+..|+.||+|+.+.+++|+.|+ ++||||||+| .| ++.+|-+. ....|.++.|-|
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTg-kskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTG-KSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccC-CccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 3799999999999999999999999999999999999999 9999999999 77 88888886 445555555543
No 55
>KOG0113|consensus
Probab=99.00 E-value=1.2e-09 Score=111.40 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=66.2
Q ss_pred CCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 112 STKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 112 s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
...-++-+||||+-|+.+++|.+|+..| +.||.|..+.|+.|+ ||+|||||||+|+++.++.+|-+.+. +.|+
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF-~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id 169 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREF-EKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID 169 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHH-HhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec
Confidence 3344888999999999999999999999 999999999999998 99999999999999999999988765 5555
No 56
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.00 E-value=1.4e-09 Score=101.42 Aligned_cols=67 Identities=25% Similarity=0.326 Sum_probs=62.9
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+|||||||..+|+++|+++| ..||.|..+.|..|+ ++.++|||||.|.+.+++..||+... ..+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F-~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~ 183 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELF-KKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE 183 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHH-HhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC
Confidence 5899999999999999999999 999999999999997 99999999999999999999999977 4444
No 57
>KOG0110|consensus
Probab=98.98 E-value=3.6e-09 Score=117.32 Aligned_cols=154 Identities=17% Similarity=0.132 Sum_probs=102.3
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHHhhcC------CC--C
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILGQWAT------EG--N 89 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq~ss------r~--i 89 (534)
.....+.++|+|||..+.+++|..+|..||+|..+.+. ...+ -+.|.|.+ ++++|+.... .. +
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp-~~G~------~aiv~fl~p~eAr~Afrklaysr~k~~plyl 453 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP-PGGT------GAIVEFLNPLEARKAFRKLAYSRFKSAPLYL 453 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC-cccc------eeeeeecCccchHHHHHHhchhhhccCcccc
Confidence 33445789999999999999999999999999877333 2222 38999933 7777776500 00 0
Q ss_pred ccccceecc---ccc--------------------------CCCCCCCCCC----CCCCCCCceeEeccccCcCCHHHHH
Q psy3698 90 LCGRVEVVP---WAI--------------------------SDSNYSPQGH----STKLEPGKTIFVGALHGRLTAQALY 136 (534)
Q Consensus 90 ~~k~VQVrP---w~l--------------------------sds~~~~~~~----s~~~d~~ktIFVGNLP~~~TeedLr 136 (534)
..-+..+.. -.. .+........ ........+|||.||.+++|.++|.
T Consensus 454 e~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~ 533 (725)
T KOG0110|consen 454 EWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLE 533 (725)
T ss_pred ccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHH
Confidence 000001100 000 0000000000 0001112339999999999999999
Q ss_pred HHhhhcCCCeEEEEEecCCCC----CCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 137 NVMNDLFGDVVYAGIDTDKHK----YPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 137 eiF~s~FG~Vv~V~I~~DkTG----~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..| .+.|.|..+.|...+.. .+.|||||.|.+.++|.+|++++.
T Consensus 534 ~~F-~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lq 581 (725)
T KOG0110|consen 534 DLF-SKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQ 581 (725)
T ss_pred HHH-HhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhc
Confidence 999 88999999998776533 246999999999999999999965
No 58
>KOG0121|consensus
Probab=98.97 E-value=9.3e-10 Score=100.89 Aligned_cols=76 Identities=12% Similarity=0.053 Sum_probs=63.5
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
....|++||||||++.+|||+|.++|+++|+|..+.+-.|+.+. .+-||+||+| +. +|+.||+- +..++..+.+.+
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kk-tpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKK-TPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCc-CccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 34568999999999999999999999999999999998998876 8899999999 44 88888875 555555555444
No 59
>smart00362 RRM_2 RNA recognition motif.
Probab=98.97 E-value=2.1e-09 Score=82.10 Aligned_cols=66 Identities=21% Similarity=0.181 Sum_probs=53.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccc
Q psy3698 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRV 94 (534)
Q Consensus 26 KVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~V 94 (534)
+|||+|||..+++++|+++|++||+|..+.+..+. + .++|+|||+| +. ++++|++. .+..+.++.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~-~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i 69 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--G-KSKGFAFVEFESEEDAEKAIEALNGTKLGGRPL 69 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--C-CCCceEEEEeCCHHHHHHHHHHhCCcEECCEEE
Confidence 59999999999999999999999999998888776 4 7899999999 54 78888875 3344444433
No 60
>KOG0106|consensus
Probab=98.97 E-value=8e-10 Score=109.05 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=101.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceeccccc
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPWAI 101 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw~l 101 (534)
.+||||+||+.+.+.+|..+|..||.|.++.+.. ||+||.| .. +|+.|+.. ..+.+.+.. .+.-|..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~---------gf~fv~fed~rda~Dav~~l~~~~l~~e~-~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN---------GFGFVEFEDPRDADDAVHDLDGKELCGER-LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec---------ccceeccCchhhhhcccchhcCceeccee-eeeeccc
Confidence 5799999999999999999999999998765432 7999999 55 88887776 444444433 3333332
Q ss_pred CC------CCCC-----CCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCH
Q psy3698 102 SD------SNYS-----PQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGST 170 (534)
Q Consensus 102 sd------s~~~-----~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~ 170 (534)
.. .... ......+......++|-+++..+.+.+|.+.| ..+|.+.++.+ .+++|||.|+.+
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~-~~~g~~~~~~~-------~~~~~~v~Fs~~ 143 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHF-RPAGEVTYVDA-------RRNFAFVEFSEQ 143 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhh-cccCCCchhhh-------hccccceeehhh
Confidence 11 0000 00111122345778999999999999999999 99999966554 468999999999
Q ss_pred HHHHHHHHhcC
Q psy3698 171 RAYSDAIRAAF 181 (534)
Q Consensus 171 EsA~kAIea~~ 181 (534)
+++.+||....
T Consensus 144 ~da~ra~~~l~ 154 (216)
T KOG0106|consen 144 EDAKRALEKLD 154 (216)
T ss_pred hhhhhcchhcc
Confidence 99999998754
No 61
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.97 E-value=1.7e-09 Score=109.33 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=61.5
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceeeccceeeeeeecc
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVKSGRICKKLQIDP 197 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk~~k~~KrVeIkP 197 (534)
.++|||+|||+.+|+++|+++| +.||.|++|.|..|+. ++|||||+|.+.++|..||......+. .+.|.|.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefF-S~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~AllLnG~~l~----gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFF-SFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALLLSGATIV----DQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHHhcCCeeC----CceEEEEe
Confidence 4789999999999999999999 9999999999998863 579999999999999999975444444 34455554
No 62
>KOG0122|consensus
Probab=98.96 E-value=1.3e-09 Score=108.75 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=61.6
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
+...+|-|-||+.+++|++|.++| ..||.|..+.|.+|+ ||.+||||||+|.++++|.+||+.++
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf-~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~Ln 252 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELF-RPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLN 252 (270)
T ss_pred CccceeEEecCccccChhHHHHHh-hccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHcc
Confidence 346789999999999999999999 999999999999999 99999999999999999999999865
No 63
>smart00360 RRM RNA recognition motif.
Probab=98.95 E-value=3.9e-09 Score=80.21 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=54.6
Q ss_pred eccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 123 VGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 123 VGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
|+|||..+++++|+++| +.||.|..+.|..++ ++.++|+|||+|.+.++|.+|++...
T Consensus 1 i~~l~~~~~~~~l~~~f-~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 1 VGNLPPDVTEEELRELF-SKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCCCCcccCHHHHHHHH-HhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC
Confidence 68999999999999999 899999999999887 79999999999999999999998766
No 64
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.94 E-value=2.2e-09 Score=119.67 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=60.9
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
....+|||||||..+++++|+++| +.||.|..+.|..|+ ++++||||||+|.+.++|.+||+..+
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF-~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~ln 170 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMN 170 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHH-HccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcC
Confidence 345789999999999999999999 899999999999998 99999999999999999999998765
No 65
>smart00360 RRM RNA recognition motif.
Probab=98.92 E-value=3.2e-09 Score=80.68 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=53.0
Q ss_pred EeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcC-CCCccccc
Q psy3698 29 IGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWAT-EGNLCGRV 94 (534)
Q Consensus 29 VGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ss-r~i~~k~V 94 (534)
|+|||+++++++|+++|++||.|..+.+..++.++ .++|||||+| +. +|++|++... ..+.++.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~-~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~ 68 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTG-KSKGFAFVEFESEEDAEKALEALNGKELDGRPL 68 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCC-CCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEE
Confidence 68999999999999999999999999998887766 8999999999 54 8888887532 44444433
No 66
>KOG0125|consensus
Probab=98.86 E-value=4.9e-09 Score=108.09 Aligned_cols=77 Identities=13% Similarity=0.047 Sum_probs=64.8
Q ss_pred CCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-h-HHHHHHHhh-cCCCCccccc
Q psy3698 18 FSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-S-ELVLILGQW-ATEGNLCGRV 94 (534)
Q Consensus 18 ~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-s-EsAeaALq~-ssr~i~~k~V 94 (534)
...+...++|.|.|||+..-|.||+.+|++||+|+++.|+.+.. .|||||||+| + +++++|-++ .+-.+.+|.|
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER---GSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER---GSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC---CCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 46666778999999999999999999999999999999887654 6899999999 3 388887776 5566777777
Q ss_pred eec
Q psy3698 95 EVV 97 (534)
Q Consensus 95 QVr 97 (534)
+|.
T Consensus 167 EVn 169 (376)
T KOG0125|consen 167 EVN 169 (376)
T ss_pred EEe
Confidence 776
No 67
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.85 E-value=8.7e-09 Score=103.09 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=62.9
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceeeccceeeeeeecc
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVKSGRICKKLQIDP 197 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk~~k~~KrVeIkP 197 (534)
.++|||+||++.+|+++|+++| +.||.|.+|.|..|. ..+|||||+|.+.+++..||.-..-.|. ...|.|.|
T Consensus 5 g~TV~V~NLS~~tTE~dLrefF-S~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAllLnGa~l~----d~~I~It~ 77 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFF-SHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAVLLSGATIV----DQRVCITR 77 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHH-HhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHHhcCCCeeC----CceEEEEe
Confidence 4899999999999999999999 999999999999984 4568999999999999999965554443 34577776
Q ss_pred c
Q psy3698 198 Y 198 (534)
Q Consensus 198 y 198 (534)
+
T Consensus 78 ~ 78 (243)
T PLN03121 78 W 78 (243)
T ss_pred C
Confidence 5
No 68
>KOG0147|consensus
Probab=98.85 E-value=1.2e-08 Score=110.76 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=51.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe--hHHHHHHHh
Q psy3698 27 IFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI--SELVLILGQ 83 (534)
Q Consensus 27 VFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF--sEsAeaALq 83 (534)
|+||||-+++||+.|+.+|+.||.|..+.+++|..|| ++||||||+| .|.+++|+.
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG-~skgfGfi~f~~~~~ar~a~e 338 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETG-RSKGFGFITFVNKEDARKALE 338 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccc-cccCcceEEEecHHHHHHHHH
Confidence 9999999999999999999999999999999999889 9999999999 556666644
No 69
>KOG0107|consensus
Probab=98.81 E-value=6.7e-09 Score=99.43 Aligned_cols=69 Identities=16% Similarity=0.296 Sum_probs=53.9
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHHhh-cCCCCcccccee
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq~-ssr~i~~k~VQV 96 (534)
...+|||||||+.++++.||..+|..||+|..+||.+. +.|||||+|.+ +|+.|+.. ..+.+-+..+.|
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn------PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN------PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec------CCCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 34689999999999999999999999999999999883 45899999933 66666653 444444444433
No 70
>KOG4207|consensus
Probab=98.80 E-value=8.5e-09 Score=101.01 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=70.1
Q ss_pred CCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCc-eeeccceee
Q psy3698 114 KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFI-EVKSGRICK 191 (534)
Q Consensus 114 ~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~v-eIk~~k~~K 191 (534)
.++...+|-|-||-+.++.++|+.+| ++||.|.+|.|+.|+ |+.++|||||-|.+..+|+.|++++.. .|... .-
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvF-ekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR--el 85 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVF-EKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR--EL 85 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHH-HHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccc--ee
Confidence 45566889999999999999999999 999999999999999 999999999999999999999998763 33332 23
Q ss_pred eeeeccc
Q psy3698 192 KLQIDPY 198 (534)
Q Consensus 192 rVeIkPy 198 (534)
+||+.-|
T Consensus 86 rVq~ary 92 (256)
T KOG4207|consen 86 RVQMARY 92 (256)
T ss_pred eehhhhc
Confidence 5777666
No 71
>PLN03213 repressor of silencing 3; Provisional
Probab=98.79 E-value=1.3e-08 Score=109.34 Aligned_cols=73 Identities=18% Similarity=0.070 Sum_probs=57.1
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH---HHHHHHhh-cCCCCcccc
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE---LVLILGQW-ATEGNLCGR 93 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE---sAeaALq~-ssr~i~~k~ 93 (534)
......-+||||||++++|+++|+.+|++||.|..+.|+++ +| ||||||+| .+ ++++||.. .+....++.
T Consensus 5 es~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG---RGFAFVEMssdddaEeeKAISaLNGAEWKGR~ 79 (759)
T PLN03213 5 SSGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG---RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGR 79 (759)
T ss_pred ccCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC---CceEEEEecCCcHHHHHHHHHHhcCCeecCce
Confidence 34455679999999999999999999999999999999854 44 89999999 33 67888875 444444444
Q ss_pred cee
Q psy3698 94 VEV 96 (534)
Q Consensus 94 VQV 96 (534)
++|
T Consensus 80 LKV 82 (759)
T PLN03213 80 LRL 82 (759)
T ss_pred eEE
Confidence 444
No 72
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.78 E-value=3e-08 Score=76.10 Aligned_cols=62 Identities=27% Similarity=0.326 Sum_probs=57.2
Q ss_pred eeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCc
Q psy3698 120 TIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFI 182 (534)
Q Consensus 120 tIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~v 182 (534)
+|+|+|||..+++++|+++| +.||.|..+.+..++.+.++|+|||+|.+.++|..|++...-
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~-~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~ 62 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELF-SKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNG 62 (74)
T ss_pred CEEEeCCCCccCHHHHHHHH-HhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 48999999999999999999 889999999999988668899999999999999999987653
No 73
>KOG0122|consensus
Probab=98.76 E-value=1.3e-08 Score=101.57 Aligned_cols=70 Identities=16% Similarity=0.075 Sum_probs=60.7
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCc
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNL 90 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~ 90 (534)
+..+.++|=|.||+.+++|++|+++|.+||.|..+.+.+|+.|| .+||||||+| ++ +|.+||+. ++..+.
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG-~~kGFAFVtF~sRddA~rAI~~LnG~gyd 257 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETG-LSKGFAFVTFESRDDAARAIADLNGYGYD 257 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccC-cccceEEEEEecHHHHHHHHHHccCcccc
Confidence 44578899999999999999999999999999999999999999 9999999999 55 77777765 444433
No 74
>KOG0126|consensus
Probab=98.75 E-value=1.3e-09 Score=104.90 Aligned_cols=63 Identities=21% Similarity=0.282 Sum_probs=59.5
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..-|||||||+.+||.||..+| ++||+|+.|.+++|+ ||++|||||..|++..+..-||...+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VF-SqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~N 98 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVF-SQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLN 98 (219)
T ss_pred ceEEEECCCcccccCCcEEEEe-eccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccC
Confidence 4669999999999999999999 999999999999998 99999999999999999999987755
No 75
>KOG1457|consensus
Probab=98.75 E-value=5.4e-08 Score=96.42 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=47.0
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhc
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAA 180 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~ 180 (534)
..||||.||..++||++|+.+| +.|-.....+|.. +. ....|||+|++.+.|..|+...
T Consensus 210 cstlfianl~~~~~ed~l~~~~-~~~~gf~~l~~~~-~~--g~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLL-SRYPGFHILKIRA-RG--GMPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHH-HhCCCceEEEEec-CC--CcceEeecHHHHHHHHHHHHHh
Confidence 4789999999999999999999 8998887777644 22 2346888888888887777653
No 76
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.75 E-value=4.3e-08 Score=75.24 Aligned_cols=69 Identities=20% Similarity=0.176 Sum_probs=54.9
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhc-CCCCcccccee
Q psy3698 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWA-TEGNLCGRVEV 96 (534)
Q Consensus 26 KVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~s-sr~i~~k~VQV 96 (534)
+|+|+|||+++++++|+++|+.||.|..+.+..+..+ .++|+|||+| +. +++.|++.. ...+.++.+++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~--~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v 72 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT--KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRV 72 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC--CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 5899999999999999999999999999888887654 6789999999 54 888888753 22244444443
No 77
>KOG0126|consensus
Probab=98.74 E-value=1.2e-09 Score=105.23 Aligned_cols=77 Identities=21% Similarity=0.243 Sum_probs=60.1
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHH-hhcCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILG-QWATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaAL-q~ssr~i~~k~VQ 95 (534)
.+-.++.=|||||||+++||.+|.-+|++||+|+.+.+++|+.|| +++||||+.|.+ +.--|+ +.++-.|.+|.+.
T Consensus 30 ~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TG-KSKGFaFLcYEDQRSTILAVDN~NGiki~gRtir 108 (219)
T KOG0126|consen 30 QEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTG-KSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIR 108 (219)
T ss_pred hhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCC-cccceEEEEecCccceEEEEeccCCceecceeEE
Confidence 344566789999999999999999999999999999999999999 999999999933 432223 2244444445444
Q ss_pred e
Q psy3698 96 V 96 (534)
Q Consensus 96 V 96 (534)
|
T Consensus 109 V 109 (219)
T KOG0126|consen 109 V 109 (219)
T ss_pred e
Confidence 4
No 78
>KOG4205|consensus
Probab=98.72 E-value=1.1e-08 Score=106.08 Aligned_cols=74 Identities=28% Similarity=0.275 Sum_probs=68.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceecc
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVVP 98 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVrP 98 (534)
..|||||+||.+++|++|+++|++||.|..+.+|.|..+. ++|||+||+| .| +|++++......+..+.+.|+.
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~-~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkr 172 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTS-RPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKR 172 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccc-ccccceeeEeccccccceecccceeeecCceeeEee
Confidence 5699999999999999999999999999999999999988 9999999999 77 9999999877888888888763
No 79
>KOG0107|consensus
Probab=98.72 E-value=2.9e-08 Score=95.14 Aligned_cols=59 Identities=24% Similarity=0.350 Sum_probs=54.1
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+||||||+..+++.||..+| ..||.+-.|-|.. .|-|||||+|++..+|..|+..+.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F-~~yG~lrsvWvAr----nPPGfAFVEFed~RDA~DAvr~LD 68 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAF-SKYGPLRSVWVAR----NPPGFAFVEFEDPRDAEDAVRYLD 68 (195)
T ss_pred CceEEeccCCCCcchHHHHHHH-HhcCcceeEEEee----cCCCceEEeccCcccHHHHHhhcC
Confidence 5789999999999999999999 9999999998887 478999999999999999998755
No 80
>PLN03213 repressor of silencing 3; Provisional
Probab=98.71 E-value=3e-08 Score=106.61 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=57.7
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCH--HHHHHHHHhcC-ceeecc
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGST--RAYSDAIRAAF-IEVKSG 187 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~--EsA~kAIea~~-veIk~~ 187 (534)
...+||||||++.+|+++|+++| ..||.|..|.|++ .+| ||||||+|.+. +++.+||...+ .+++++
T Consensus 9 ~gMRIYVGNLSydVTEDDLravF-SeFGsVkdVEIpR-ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR 78 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIF-SPMGTVDAVEFVR-TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG 78 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEec-ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCc
Confidence 35789999999999999999999 9999999999994 366 99999999987 78999999866 444443
No 81
>KOG4454|consensus
Probab=98.69 E-value=5.3e-09 Score=103.12 Aligned_cols=132 Identities=21% Similarity=0.212 Sum_probs=107.5
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
+...++|||+|+--.++|+.|.++|-+-|+|..+.|..++.. ..| ||||.| .| +|.-|++. ++-.+..+++|+.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~--~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ--EQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC--CCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 345599999999999999999999999999999988887663 456 999999 88 99988886 4444444555444
Q ss_pred ccccCCCCCCCCCCCCCCCCCceeEecc----ccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHH
Q psy3698 98 PWAISDSNYSPQGHSTKLEPGKTIFVGA----LHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAY 173 (534)
Q Consensus 98 Pw~lsds~~~~~~~s~~~d~~ktIFVGN----LP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA 173 (534)
++-|+ |...++++.+...| +.-|.+..++|+++..++++-++||++--..+.
T Consensus 83 -----------------------~r~G~shapld~r~~~ei~~~v~-s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 83 -----------------------LRCGNSHAPLDERVTEEILYEVF-SQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAV 138 (267)
T ss_pred -----------------------cccCCCcchhhhhcchhhheeee-cccCCCCCccccccccCCccCccchhhhhhhcC
Confidence 44455 67778999999999 999999999999999999999999998766666
Q ss_pred HHHHHh
Q psy3698 174 SDAIRA 179 (534)
Q Consensus 174 ~kAIea 179 (534)
-.|+..
T Consensus 139 P~~~~~ 144 (267)
T KOG4454|consen 139 PFALDL 144 (267)
T ss_pred cHHhhh
Confidence 566543
No 82
>KOG4210|consensus
Probab=98.69 E-value=2.2e-08 Score=102.70 Aligned_cols=169 Identities=17% Similarity=0.063 Sum_probs=121.0
Q ss_pred ccccCCCCCCCCCCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-h-HHHHHHHh
Q psy3698 6 KTWEGVLPLRTQFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-S-ELVLILGQ 83 (534)
Q Consensus 6 ~tWsG~lPPR~~~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-s-EsAeaALq 83 (534)
.-|.+.++... ......+++|+|++-+.+.+.++..+|.+.|.+..+......... .++||++|.| . +.+..+|+
T Consensus 72 ~~~~~~~s~~~--~~~~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~-~sk~~~s~~f~~ks~~~~~l~ 148 (285)
T KOG4210|consen 72 LSEEDSLSSKE--ELRGSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSL-SSKGGLSVHFAGKSQFFAALE 148 (285)
T ss_pred hhhcccccCCc--ccccccccccccccccchhhccccccchhhcCcccchhhhhcccc-ccccceeeccccHHHHHHHHH
Confidence 34555554443 111468899999999999999999999999998887777766666 8999999999 4 47777777
Q ss_pred hcCCCCc-cccceecccccCCCCCCC-CCCCCCCCCCceeE-eccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCC
Q psy3698 84 WATEGNL-CGRVEVVPWAISDSNYSP-QGHSTKLEPGKTIF-VGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYP 159 (534)
Q Consensus 84 ~ssr~i~-~k~VQVrPw~lsds~~~~-~~~s~~~d~~ktIF-VGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~p 159 (534)
+...... ...+.. +....-..... ...........++| |++|+..+++++|+..| ..+|.|..++++.++ ++..
T Consensus 149 ~s~~~~~~~~~~~~-dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~-~~~~~i~~~r~~~~~~s~~~ 226 (285)
T KOG4210|consen 149 ESGSKVLDGNKGEK-DLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHF-VSSGEITSVRLPTDEESGDS 226 (285)
T ss_pred hhhccccccccccC-cccccccccccchhcccccCccccceeecccccccchHHHhhhc-cCcCcceeeccCCCCCccch
Confidence 6443111 111110 00000000000 01112233456676 99999999999999999 899999999999998 9999
Q ss_pred ceEEEEEeCCHHHHHHHHHh
Q psy3698 160 IGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 160 KGfGFVtF~d~EsA~kAIea 179 (534)
+|||+|.|.+.....+|+..
T Consensus 227 kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 227 KGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred hhhhhhhhhhchhHHHHhhc
Confidence 99999999999999999874
No 83
>KOG0128|consensus
Probab=98.68 E-value=1.6e-09 Score=121.80 Aligned_cols=135 Identities=13% Similarity=0.037 Sum_probs=112.3
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceeccc
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVVPW 99 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVrPw 99 (534)
.+.+++||.||+..+.+++|...|..+|.+.++.+..-...+ +.||+||+.| .+ .+.++|......
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~-~~rG~~Y~~F~~~~~~~aaV~f~d~~----------- 732 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEK-RFRGKAYVEFLKPEHAGAAVAFRDSC----------- 732 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhcc-ccccceeeEeecCCchhhhhhhhhhh-----------
Confidence 345789999999999999999999999999877766444445 8999999999 55 777777631111
Q ss_pred ccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 100 AISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 100 ~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea 179 (534)
...+..|||.|+|+..|.++|+.++ ..+|.+..+++++.+.|+|||-|||.|.++.++.+++.+
T Consensus 733 ---------------~~gK~~v~i~g~pf~gt~e~~k~l~-~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s 796 (881)
T KOG0128|consen 733 ---------------FFGKISVAISGPPFQGTKEELKSLA-SKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVAS 796 (881)
T ss_pred ---------------hhhhhhhheeCCCCCCchHHHHhhc-cccCCccccchhhhhccccccceeccCCCcchhhhhccc
Confidence 1124679999999999999999999 999999999999988999999999999999999999877
Q ss_pred cCcee
Q psy3698 180 AFIEV 184 (534)
Q Consensus 180 ~~veI 184 (534)
..+.+
T Consensus 797 ~d~~~ 801 (881)
T KOG0128|consen 797 VDVAG 801 (881)
T ss_pred chhhh
Confidence 55433
No 84
>KOG0146|consensus
Probab=98.65 E-value=2.2e-08 Score=101.14 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=68.6
Q ss_pred ccceecccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHH
Q psy3698 92 GRVEVVPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTR 171 (534)
Q Consensus 92 k~VQVrPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~E 171 (534)
|.+||+|..... +....++||||-|.+.-.|||++.+| ..||.|.+|.+.+.+.|.+||+|||.|.++-
T Consensus 3 rpiqvkpadses----------rg~~drklfvgml~kqq~e~dvrrlf-~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~ 71 (371)
T KOG0146|consen 3 RPIQVKPADSES----------RGGDDRKLFVGMLNKQQSEDDVRRLF-QPFGNIEECTVLRGPDGNSKGCAFVKFSSHA 71 (371)
T ss_pred CCcccccccccc----------CCccchhhhhhhhcccccHHHHHHHh-cccCCcceeEEecCCCCCCCCceEEEeccch
Confidence 677887633211 12246889999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q psy3698 172 AYSDAIRAAF 181 (534)
Q Consensus 172 sA~kAIea~~ 181 (534)
+|..||.+.+
T Consensus 72 eAqaAI~aLH 81 (371)
T KOG0146|consen 72 EAQAAINALH 81 (371)
T ss_pred HHHHHHHHhc
Confidence 9999999977
No 85
>KOG0108|consensus
Probab=98.62 E-value=5.8e-08 Score=104.66 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=64.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
+.|||||||++++|++|.++|+..|.|...+++.|+.|| ++|||||++| .+ .+..|++. .+..+.++.+++.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG-~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~ 93 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETG-KPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVN 93 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCC-CcCceeeEecCchhhHHHHHHhcCCcccCCceEEee
Confidence 889999999999999999999999999999999999999 9999999999 54 77777765 6677777777664
No 86
>KOG4207|consensus
Probab=98.58 E-value=1e-07 Score=93.54 Aligned_cols=72 Identities=10% Similarity=0.006 Sum_probs=60.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
-..|-|-||-+-+|.++|+.+|++||.|-++.|.+|+.|+ .++|||||.| .. +|+.|++. .+..+.++++.|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr-~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTR-QSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccc-cccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 4578999999999999999999999999999999999998 9999999999 33 77777775 444455555443
No 87
>KOG4212|consensus
Probab=98.55 E-value=1.3e-07 Score=100.57 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=64.2
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceeecc
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVKSG 187 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk~~ 187 (534)
.+.+||.|+|+++.+++|+++|.++.|+|++|.+..|..|++||+|.|+|.++|.++||++..+ .+++..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR 114 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGR 114 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCc
Confidence 4569999999999999999999999999999999999999999999999999999999999876 444443
No 88
>KOG0121|consensus
Probab=98.54 E-value=1.1e-07 Score=87.41 Aligned_cols=63 Identities=25% Similarity=0.348 Sum_probs=59.1
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhc
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAA 180 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~ 180 (534)
...|||||||++.+|||+|.++| ++.|.|..|.+-.|+ ++.|-||.||.|.+.++|..||+-.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELF-s~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryi 98 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELF-SKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYI 98 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHH-HhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHh
Confidence 46899999999999999999999 999999999999998 8889999999999999999998753
No 89
>KOG0108|consensus
Probab=98.53 E-value=1.3e-07 Score=101.94 Aligned_cols=67 Identities=22% Similarity=0.294 Sum_probs=62.5
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceeec
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVKS 186 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk~ 186 (534)
..|||||+|+++++++|.++| +..|.|..++++.|+ +|++|||||++|.+.+.+.+||+..+ .++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~-~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g 87 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIF-SGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG 87 (435)
T ss_pred cceEecCCCCcccHHHHHHHH-hccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC
Confidence 789999999999999999999 999999999999998 99999999999999999999999876 44443
No 90
>KOG0131|consensus
Probab=98.53 E-value=1.2e-07 Score=91.43 Aligned_cols=65 Identities=25% Similarity=0.354 Sum_probs=61.3
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
+...|||||||+..++++.|.++| -+.|.|+.+.|+.|+ +...+|||||+|.++|+|+-||+-.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~-iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln 72 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELF-IQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILN 72 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHH-HhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHH
Confidence 456899999999999999999999 899999999999999 88999999999999999999998765
No 91
>KOG0111|consensus
Probab=98.47 E-value=1e-07 Score=94.28 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=61.5
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+++||||+|...+||.-|...| =.||.|.++.|+.|. +++.||||||+|...|+|.+||..++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAF-IPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMn 73 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAF-IPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMN 73 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhcc-ccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCc
Confidence 457899999999999999999999 899999999999997 99999999999999999999998866
No 92
>KOG0114|consensus
Probab=98.46 E-value=4.9e-07 Score=80.68 Aligned_cols=76 Identities=11% Similarity=0.157 Sum_probs=60.2
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHHhh-cCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq~-ssr~i~~k~VQV 96 (534)
++...+-|||.|||++||.|++.++|.+||.|..++|..++.| ||-|||+|.+ +|++|+.. ++..+..+-+.+
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T----rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET----RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc----CceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 4455688999999999999999999999999999999887765 5999999955 88888875 444444444444
Q ss_pred ccc
Q psy3698 97 VPW 99 (534)
Q Consensus 97 rPw 99 (534)
.-|
T Consensus 90 lyy 92 (124)
T KOG0114|consen 90 LYY 92 (124)
T ss_pred Eec
Confidence 433
No 93
>KOG1365|consensus
Probab=98.46 E-value=1.1e-06 Score=92.65 Aligned_cols=152 Identities=13% Similarity=0.144 Sum_probs=104.6
Q ss_pred eEEEeCCCCCCCHHHHHHHhh-----ccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccce---
Q psy3698 26 KIFIGGVPWDTPEYLLLTVFS-----QFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVE--- 95 (534)
Q Consensus 26 KVFVGNLP~diTEeeLre~Fs-----qFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQ--- 95 (534)
-|=+.|||+++|+.++.++|. .-|...+..+.+.. | +..|=|||.| .| .|+.||......|..|-|+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd--g-rpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD--G-RPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC--C-CcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 356689999999999999997 33455555565532 4 7889999999 77 9999998744333322221
Q ss_pred --------eccccc----C---CCCCCCC---CCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCC-CeEE--EEEecC
Q psy3698 96 --------VVPWAI----S---DSNYSPQ---GHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFG-DVVY--AGIDTD 154 (534)
Q Consensus 96 --------VrPw~l----s---ds~~~~~---~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG-~Vv~--V~I~~D 154 (534)
+..... . .+..... ....+...+..|-+.+||+..+-|+|.++| ..|- .|.. |.++.+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Fl-gdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFL-GDFATDIRFQGVHMVLN 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHH-HHHhhhcccceeEEEEc
Confidence 110000 0 0000000 001122336789999999999999999999 5565 4444 678888
Q ss_pred CCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 155 KHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 155 kTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..|+|.|-|||.|.+.|+|.+|.++.+
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~h 345 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCH 345 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHH
Confidence 899999999999999999999987755
No 94
>KOG1548|consensus
Probab=98.46 E-value=3.9e-06 Score=87.53 Aligned_cols=154 Identities=14% Similarity=0.170 Sum_probs=100.7
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeE--------EeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCc
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKV--------EWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNL 90 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~--------v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~ 90 (534)
..-..|||.|||.++|-+++.++|+++|-|.. |++-++.. | ..||=|.+.| .+ +|+-|++. ..-.++
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G-~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-G-KLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-C-CccCceEEEeecccHHHHHHHHhCccccc
Confidence 33456999999999999999999999998742 34445444 5 7899999999 55 99999887 222233
Q ss_pred cccceecccccC-CCCC--------------------------CCC-CCCCCCCCCceeEeccc----cCcCC-------
Q psy3698 91 CGRVEVVPWAIS-DSNY--------------------------SPQ-GHSTKLEPGKTIFVGAL----HGRLT------- 131 (534)
Q Consensus 91 ~k~VQVrPw~ls-ds~~--------------------------~~~-~~s~~~d~~ktIFVGNL----P~~~T------- 131 (534)
++.++|...... ...+ ... ....+....++|.+.|| -...+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 333333211100 0000 000 01112233578888887 12233
Q ss_pred HHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 132 AQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 132 eedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.++|++-- ++||.|..|.|-- ..|.|.+-|.|.+.+.|+.+|+.+.
T Consensus 290 kedl~eec-~K~G~v~~vvv~d---~hPdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 290 KEDLTEEC-EKFGQVRKVVVYD---RHPDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred HHHHHHHH-HHhCCcceEEEec---cCCCceeEEEeCChHHHHHHHHHhc
Confidence 23444556 7899999987653 2378999999999999999999865
No 95
>KOG0132|consensus
Probab=98.43 E-value=3.7e-07 Score=102.47 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=62.2
Q ss_pred CCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccc
Q psy3698 18 FSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRV 94 (534)
Q Consensus 18 ~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~V 94 (534)
....++|++||||+|+..++|.+|+++|+.||+|..+.++ .+||+|||+. .. +|++||++ ++..+..+.|
T Consensus 415 d~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~I 487 (894)
T KOG0132|consen 415 DHISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTI 487 (894)
T ss_pred cceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeec-------cCCceeEEEEeehhHHHHHHHHHhcccccceee
Confidence 3467899999999999999999999999999999988765 3578999999 55 88888876 4455555555
Q ss_pred eecccccC
Q psy3698 95 EVVPWAIS 102 (534)
Q Consensus 95 QVrPw~ls 102 (534)
.+. |.+.
T Consensus 488 ki~-Wa~g 494 (894)
T KOG0132|consen 488 KIA-WAVG 494 (894)
T ss_pred EEe-eecc
Confidence 554 7764
No 96
>smart00361 RRM_1 RNA recognition motif.
Probab=98.43 E-value=5.6e-07 Score=73.03 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=43.5
Q ss_pred HHHHHHHhhh----cCCCeEEEE-EecCC-C--CCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 132 AQALYNVMND----LFGDVVYAG-IDTDK-H--KYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 132 eedLreiF~s----~FG~Vv~V~-I~~Dk-T--G~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
+++|+++| + .||.|..+. |..|+ + +.+||||||+|.+.++|.+||+..+
T Consensus 2 ~~~l~~~~-~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~ 58 (70)
T smart00361 2 DEDFEREF-SEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLN 58 (70)
T ss_pred chhHHHHH-HHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhC
Confidence 67899999 7 999999995 77776 5 8999999999999999999999755
No 97
>KOG0130|consensus
Probab=98.42 E-value=3.7e-07 Score=84.74 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=62.4
Q ss_pred CCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 114 KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 114 ~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
+.....-|||.+++...|++++.+.| ..||+|..+.+..|. ||+.||||.|+|++.+.|++||.+.+
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F-~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~N 135 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKF-ADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALN 135 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHH-hhcccccceeeccccccccccceeeeehHhHHHHHHHHHhcc
Confidence 33456789999999999999999999 999999999999998 99999999999999999999999877
No 98
>KOG0120|consensus
Probab=98.40 E-value=2e-06 Score=93.95 Aligned_cols=171 Identities=16% Similarity=0.138 Sum_probs=107.1
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHHhh-cCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq~-ssr~i~~k~VQ 95 (534)
..+...+|+|||+||..+++.+++++.+.||.+....+.+|..++ .+|||||-+|.+ -.+.|+.. ++..+..+.+.
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g-~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG-NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc-cccceeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence 556667899999999999999999999999999999999999887 899999999933 22233322 22222222211
Q ss_pred e----------cccccCCCCCCCCCC----CCCCCCCceeEeccccCcCCHHHHH------HH-------hhhcCCCeEE
Q psy3698 96 V----------VPWAISDSNYSPQGH----STKLEPGKTIFVGALHGRLTAQALY------NV-------MNDLFGDVVY 148 (534)
Q Consensus 96 V----------rPw~lsds~~~~~~~----s~~~d~~ktIFVGNLP~~~TeedLr------ei-------F~s~FG~Vv~ 148 (534)
+ .+|............ .....++..|- |-..+|.++|+ ++ + ..||.|..
T Consensus 363 vq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~---L~n~Vt~deLkdd~EyeeIlEdvr~ec-~k~g~v~~ 438 (500)
T KOG0120|consen 363 VQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLC---LTNVVTPDELKDDEEYEEILEDVRTEC-AKFGAVRS 438 (500)
T ss_pred eehhhccchhccccCCccccccccchhhhcccCCCcchhhh---hhhcCCHHHhcchHHHHHHHHHHHHHh-cccCceeE
Confidence 1 111110000000000 00111222222 33344554443 33 4 56999999
Q ss_pred EEEecC-CC---CCCceEEEEEeCCHHHHHHHHHhcCceeeccceeeeeeeccc
Q psy3698 149 AGIDTD-KH---KYPIGSGRITFGSTRAYSDAIRAAFIEVKSGRICKKLQIDPY 198 (534)
Q Consensus 149 V~I~~D-kT---G~pKGfGFVtF~d~EsA~kAIea~~veIk~~k~~KrVeIkPy 198 (534)
|.|.++ .. .-.-|--||+|.+.+++++|.++ +.+.+|..++-+--|
T Consensus 439 v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~----L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 439 VEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEE----LTGRKFANRTVVASY 488 (500)
T ss_pred EecCCCCCCCCcCCCcccEEEEecChHHHHHHHHH----ccCceeCCcEEEEEe
Confidence 999988 42 33357779999999999999987 456666665555444
No 99
>KOG0111|consensus
Probab=98.39 E-value=1.9e-07 Score=92.43 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=63.0
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe--hHHHHHHHh-hcCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI--SELVLILGQ-WATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF--sEsAeaALq-~ssr~i~~k~VQV 96 (534)
.....|+||||||..++||.-|...|-.||.|.++.+..|..+. ++||||||+| .|+|.+|+. ++...+-+|.+.|
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesq-kHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirV 84 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQ-KHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRV 84 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcc-cccceeEEEeeccchhHHHhhcCchhhhcceeEEE
Confidence 34567999999999999999999999999999999999999888 9999999999 555555554 4555555565555
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 85 N 85 (298)
T KOG0111|consen 85 N 85 (298)
T ss_pred e
Confidence 3
No 100
>KOG0109|consensus
Probab=98.37 E-value=3.4e-07 Score=93.56 Aligned_cols=83 Identities=24% Similarity=0.376 Sum_probs=63.4
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC--------ceeecccee
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF--------IEVKSGRIC 190 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~--------veIk~~k~~ 190 (534)
.+|||||||..+++.+|+.+| ++||+|++|.|+. .||||..+++..+..||...+ |.|+-.+..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lF-e~ygkVlECDIvK-------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLF-EQYGKVLECDIVK-------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHH-HhhCceEeeeeec-------ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 469999999999999999999 9999999999876 699999999999999999754 333333322
Q ss_pred eeeeeccccccccccccCCC
Q psy3698 191 KKLQIDPYLEDNVCSECQTH 210 (534)
Q Consensus 191 KrVeIkPyLeDq~CdeC~~~ 210 (534)
.+...|++ .-.+|..|..+
T Consensus 75 sk~stkl~-vgNis~tctn~ 93 (346)
T KOG0109|consen 75 SKASTKLH-VGNISPTCTNQ 93 (346)
T ss_pred CCCccccc-cCCCCccccCH
Confidence 23333443 33567777653
No 101
>KOG0114|consensus
Probab=98.36 E-value=1.2e-06 Score=78.23 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=56.4
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
+-.+-|||.|||+.+|.|+..++| .+||.|..++|-.++ .-||.|||.|++..+|.+|++...
T Consensus 16 evnriLyirNLp~~ITseemydlF-Gkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhls 78 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLF-GKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLS 78 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHh-hcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhc
Confidence 446789999999999999999999 999999999987754 458999999999999999998754
No 102
>KOG0226|consensus
Probab=98.30 E-value=9.8e-07 Score=88.89 Aligned_cols=147 Identities=17% Similarity=0.154 Sum_probs=106.0
Q ss_pred CeEEEeCCCCCCCHHH-H--HHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHHhh-cCCCCccccceec-
Q psy3698 25 NKIFIGGVPWDTPEYL-L--LTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILGQW-ATEGNLCGRVEVV- 97 (534)
Q Consensus 25 rKVFVGNLP~diTEee-L--re~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq~-ssr~i~~k~VQVr- 97 (534)
-..|++++-.++..+- | ...|+.+-.+..-.+.+++-. .-++++|+.|.. +..++-.+ .++.+...+|...
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~--~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQ--PIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCC--ccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 3577888877777766 4 778888888877777776542 557899999933 33333222 3333332222221
Q ss_pred --ccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHH
Q psy3698 98 --PWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYS 174 (534)
Q Consensus 98 --Pw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~ 174 (534)
.|. |. ......+...+||.|.|..+++++-|...| .+|-.-..+++.+|+ ||++||||||.|.+..++.
T Consensus 175 gtswe--dP-----sl~ew~~~DfRIfcgdlgNevnd~vl~raf-~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 175 GTSWE--DP-----SLAEWDEDDFRIFCGDLGNEVNDDVLARAF-KKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred ccccC--Cc-----ccccCccccceeecccccccccHHHHHHHH-HhccchhhccccccccccccccceeeeecCHHHHH
Confidence 111 11 111223456889999999999999999999 999999999999998 9999999999999999999
Q ss_pred HHHHhcC
Q psy3698 175 DAIRAAF 181 (534)
Q Consensus 175 kAIea~~ 181 (534)
+|+....
T Consensus 247 rAmrem~ 253 (290)
T KOG0226|consen 247 RAMREMN 253 (290)
T ss_pred HHHHhhc
Confidence 9998865
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=98.29 E-value=1.4e-06 Score=70.74 Aligned_cols=58 Identities=10% Similarity=-0.227 Sum_probs=43.5
Q ss_pred CHHHHHHHhh----ccCCeeEEe-ecCCCCC--CCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 37 PEYLLLTVFS----QFGPVKVEW-PQGTPES--PTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 37 TEeeLre~Fs----qFG~V~~v~-~~rD~~T--g~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
.+++|+++|+ +||.|..+. +..++.+ + .+||||||+| ++ +|.+|++. .++.+.++.+.
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~-~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~ 68 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYEN-HKRGNVYITFERSEDAARAIVDLNGRYFDGRTVK 68 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3688999999 999999885 5565544 6 8999999999 55 88888875 55555555443
No 104
>KOG0105|consensus
Probab=98.25 E-value=1.1e-06 Score=85.26 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=53.5
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+|||||||.++.+.+|.++| -+||.|..+.+.. .-.+-.||||+|++..+|+.||..+.
T Consensus 6 ~~~iyvGNLP~diRekeieDlF-yKyg~i~~ieLK~--r~g~ppfafVeFEd~RDAeDAiygRd 66 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLF-YKYGRIREIELKN--RPGPPPFAFVEFEDPRDAEDAIYGRD 66 (241)
T ss_pred cceEEecCCCcchhhccHHHHH-hhhcceEEEEecc--CCCCCCeeEEEecCccchhhhhhccc
Confidence 5789999999999999999999 9999999887644 22356899999999999999998876
No 105
>KOG0120|consensus
Probab=98.22 E-value=3.2e-06 Score=92.45 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=108.5
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhcc-----------CC-eeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQF-----------GP-VKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW 84 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqF-----------G~-V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ 84 (534)
......++++|+++|..++|+++-.+|..- |+ |..+.+- ..+.||||+| +. .+..++..
T Consensus 170 ~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n-------~~~nfa~ie~~s~~~at~~~~~ 242 (500)
T KOG0120|consen 170 QATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN-------LEKNFAFIEFRSISEATEAMAL 242 (500)
T ss_pred chhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec-------ccccceeEEecCCCchhhhhcc
Confidence 444456899999999999999999999764 33 3333332 3457999999 44 56555555
Q ss_pred cCCCCccccceec--------ccccCCC----CCCC-CCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEE
Q psy3698 85 ATEGNLCGRVEVV--------PWAISDS----NYSP-QGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGI 151 (534)
Q Consensus 85 ssr~i~~k~VQVr--------Pw~lsds----~~~~-~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I 151 (534)
......+.++.++ |-..... .+.. .......+...+||||+||..+++.++++++ +.||.+....+
T Consensus 243 ~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell-~~fg~lk~f~l 321 (500)
T KOG0120|consen 243 DGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELL-DSFGPLKAFRL 321 (500)
T ss_pred cchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHH-Hhcccchhhee
Confidence 3322233222221 0000000 0000 0112223456889999999999999999999 99999999999
Q ss_pred ecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 152 DTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 152 ~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..|. +|.+|||||.+|-+......||+..+
T Consensus 322 v~d~~~g~skg~af~ey~dpsvtd~A~agLn 352 (500)
T KOG0120|consen 322 VKDSATGNSKGFAFCEYCDPSVTDQAIAGLN 352 (500)
T ss_pred ecccccccccceeeeeeeCCcchhhhhcccc
Confidence 9998 89999999999999999999998876
No 106
>KOG0112|consensus
Probab=98.20 E-value=1.1e-06 Score=99.85 Aligned_cols=143 Identities=15% Similarity=0.065 Sum_probs=108.8
Q ss_pred CCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe--hH-HHHHHHhhcCCCCccccc
Q psy3698 18 FSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI--SE-LVLILGQWATEGNLCGRV 94 (534)
Q Consensus 18 ~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF--sE-sAeaALq~ssr~i~~k~V 94 (534)
.+.....++||+|||+.++++.+|+..|..+|.|..+.+..... + +---||||.| .+ +-.+.+++..+.|..-..
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~-~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~ 443 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-K-TESAYAFVSLLNTDMTPSAKFEESGPLIGNGTH 443 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-C-cccchhhhhhhccccCcccchhhcCCccccCcc
Confidence 35667789999999999999999999999999998887766532 1 2235999999 44 555556656665553332
Q ss_pred eecccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHH
Q psy3698 95 EVVPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYS 174 (534)
Q Consensus 95 QVrPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~ 174 (534)
++. .......+...++||+|+.++.-..|...| +.||.|..+.+.. .--||+|.|.+...++
T Consensus 444 r~g------------lG~~kst~ttr~~sgglg~w~p~~~l~r~f-d~fGpir~Idy~h-----gq~yayi~yes~~~aq 505 (975)
T KOG0112|consen 444 RIG------------LGQPKSTPTTRLQSGGLGPWSPVSRLNREF-DRFGPIRIIDYRH-----GQPYAYIQYESPPAAQ 505 (975)
T ss_pred ccc------------ccccccccceeeccCCCCCCChHHHHHHHh-hccCcceeeeccc-----CCcceeeecccCccch
Confidence 222 111244567889999999999999999999 9999999865544 3358999999999999
Q ss_pred HHHHhc
Q psy3698 175 DAIRAA 180 (534)
Q Consensus 175 kAIea~ 180 (534)
.|+..+
T Consensus 506 ~a~~~~ 511 (975)
T KOG0112|consen 506 AATHDM 511 (975)
T ss_pred hhHHHH
Confidence 998763
No 107
>KOG4211|consensus
Probab=98.16 E-value=1.1e-05 Score=87.33 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=105.1
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeE-EeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec--
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKV-EWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV-- 97 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~-v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr-- 97 (534)
..--|=+.+|||.+||+||.++|+-.-.|.. +.+..+.. + ++.|=|||.| +. +|+.||+.....|..+-|+|-
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-g-R~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-G-RPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-C-CcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 3456888999999999999999998766654 33444444 4 6889999999 55 999999873322222211110
Q ss_pred --------------------cccc---------------------------------------CC------------CCC
Q psy3698 98 --------------------PWAI---------------------------------------SD------------SNY 106 (534)
Q Consensus 98 --------------------Pw~l---------------------------------------sd------------s~~ 106 (534)
|+.. .+ .++
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 0000 00 000
Q ss_pred CCCCCCC---------CCCC-CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHH
Q psy3698 107 SPQGHST---------KLEP-GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDA 176 (534)
Q Consensus 107 ~~~~~s~---------~~d~-~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kA 176 (534)
....... .... ...+...+||+..++.++.++| ...+...|.|.+.++|+..|=|.|.|.++++|..|
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfF--spl~p~~v~i~ig~dGr~TGEAdveF~t~edav~A 337 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFF--SPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGA 337 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhc--CCCCceeEEEEeCCCCccCCcceeecccchhhHhh
Confidence 0000000 0011 1556779999999999999999 46667799999999999999999999999999999
Q ss_pred HHhc
Q psy3698 177 IRAA 180 (534)
Q Consensus 177 Iea~ 180 (534)
+.+-
T Consensus 338 mskd 341 (510)
T KOG4211|consen 338 MGKD 341 (510)
T ss_pred hccC
Confidence 8663
No 108
>KOG0132|consensus
Probab=98.11 E-value=4.2e-06 Score=94.22 Aligned_cols=58 Identities=22% Similarity=0.358 Sum_probs=55.0
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.+|||||+|+..+++.||+++| +.||.|.+|.+.. +||+|||+....++|.+|+++..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~f-eefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~ 478 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLF-EEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLS 478 (894)
T ss_pred eeeeeeccccchhhHHHHHHHH-HhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHh
Confidence 4899999999999999999999 9999999998877 89999999999999999999865
No 109
>KOG0130|consensus
Probab=98.11 E-value=4.7e-06 Score=77.55 Aligned_cols=75 Identities=19% Similarity=0.112 Sum_probs=63.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceecccc
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPWA 100 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw~ 100 (534)
.=-|||.++-..+||++|.+.|..||+|+.+.+-.|+.|| ..||||.|+| +- .|++|+.. ++..+-+..++|- |.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtG-y~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD-w~ 149 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTG-YVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD-WC 149 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccc-cccceeeeehHhHHHHHHHHHhccchhhhCCceeEE-EE
Confidence 3469999999999999999999999999999999999999 9999999999 44 78888876 4456666666665 44
No 110
>KOG0124|consensus
Probab=98.03 E-value=5.1e-06 Score=87.26 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=63.6
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceeeccc
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVKSGR 188 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk~~k 188 (534)
-.+||||.+.+.+.|+.|+..| ..||.|.++.+.-|+ |++.||||||+|+-.|.|+-|++..+..+-.++
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF-~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGR 183 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR 183 (544)
T ss_pred hHheeeeeeEEEechHHHHhhc-cCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCc
Confidence 3679999999999999999999 999999999999998 999999999999999999999999875544443
No 111
>KOG0415|consensus
Probab=97.95 E-value=7.2e-06 Score=85.90 Aligned_cols=87 Identities=15% Similarity=0.007 Sum_probs=67.9
Q ss_pred ccccCCCCCCCCCCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHH-H
Q psy3698 6 KTWEGVLPLRTQFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLIL-G 82 (534)
Q Consensus 6 ~tWsG~lPPR~~~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaA-L 82 (534)
.-.-|.||-.+ . ..-.+-|||-.|.+-+|.++|.-+|+.||+|..|.|++|..|| -+.-||||+| .. +.++| .
T Consensus 224 LEmvGDlpdAd-~--~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktg-dsLqyaFiEFen~escE~AyF 299 (479)
T KOG0415|consen 224 LEMVGDLPDAD-V--KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTG-DSLQYAFIEFENKESCEQAYF 299 (479)
T ss_pred HHHhcCCcccc-c--CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEeccccc-chhheeeeeecchhhHHHHHh
Confidence 44568888766 2 2224679999999999999999999999999999999999999 9999999999 44 55555 4
Q ss_pred hhcCCCCcccccee
Q psy3698 83 QWATEGNLCGRVEV 96 (534)
Q Consensus 83 q~ssr~i~~k~VQV 96 (534)
++.+--|..+.|.|
T Consensus 300 KMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 300 KMDNVLIDDRRIHV 313 (479)
T ss_pred hhcceeeccceEEe
Confidence 55544455555544
No 112
>KOG0116|consensus
Probab=97.93 E-value=1.2e-05 Score=86.80 Aligned_cols=72 Identities=21% Similarity=0.130 Sum_probs=56.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
..|||+|||.++++++|+++|.+||+|+...|......+ +...||||+| .. +++.+|+.+...+.++.+.|.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~-~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGG-KNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVE 362 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCC-CcCceEEEEEeecchhhhhhhcCccccCCeeEEEE
Confidence 459999999999999999999999999877665533212 3338999999 55 999999987656666555554
No 113
>KOG1190|consensus
Probab=97.92 E-value=3.3e-05 Score=82.28 Aligned_cols=145 Identities=17% Similarity=0.144 Sum_probs=93.0
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh---cCCCCcccccee
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW---ATEGNLCGRVEV 96 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~---ssr~i~~k~VQV 96 (534)
..++-|-+++|||+++|+||.+++.+||+|..+...+-+. -|||+| .+ +|-.++.- ..+.++++++-+
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn-------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN-------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch-------hhhhhhcchhhhhheeecccccCccccCcceee
Confidence 3677899999999999999999999999998877666432 589999 55 44432221 111111111110
Q ss_pred -----------------c--------------ccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCC
Q psy3698 97 -----------------V--------------PWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGD 145 (534)
Q Consensus 97 -----------------r--------------Pw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~ 145 (534)
+ .-.+....... .......+--.++|+++-+.++-+-|..+| ++||.
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~-G~~~~~n~vLr~iie~m~ypVslDVLHqvF-S~fG~ 176 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVV-GNEDGPNPVLRTIIENMFYPVSLDVLHQVF-SKFGF 176 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccc-cccCCCceeEEEEeccceeeeEHHHHHHHH-hhcce
Confidence 0 00000000110 111111234568999999999999999999 99999
Q ss_pred eEEEEEecCCCCCCce-EEEEEeCCHHHHHHHHHh
Q psy3698 146 VVYAGIDTDKHKYPIG-SGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 146 Vv~V~I~~DkTG~pKG-fGFVtF~d~EsA~kAIea 179 (534)
|..+.--. | .-| -|.|.|.+.+.|..|-.+
T Consensus 177 VlKIiTF~-K---nn~FQALvQy~d~~sAq~AK~a 207 (492)
T KOG1190|consen 177 VLKIITFT-K---NNGFQALVQYTDAVSAQAAKLA 207 (492)
T ss_pred eEEEEEEe-c---ccchhhhhhccchhhHHHHHHh
Confidence 98764333 2 223 378999999998887544
No 114
>KOG4208|consensus
Probab=97.92 E-value=1.7e-05 Score=78.00 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=55.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhcc-CCeeEEeecCCCCCCCCCCcEEEEEe-hHHHHHHHh--hcCCCCcccccee
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQF-GPVKVEWPQGTPESPTAPKAISLDVI-SELVLILGQ--WATEGNLCGRVEV 96 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqF-G~V~~v~~~rD~~Tg~rsRGYAFVtF-sEsAeaALq--~ssr~i~~k~VQV 96 (534)
..=++|+.||.-+.|.+|..+|.+| |.|...++.|++.|| .|||||||+| +++|.++.+ |++.-+-.+.+++
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTG-NSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTG-NSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccC-CcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 3458999999999999999999999 788888888999999 9999999999 664444443 3444444444443
No 115
>KOG0153|consensus
Probab=97.87 E-value=2.8e-05 Score=81.29 Aligned_cols=59 Identities=22% Similarity=0.359 Sum_probs=54.9
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.-++||||+|-..++|.+|++.| .+||+|..+.|.. .+|+|||+|.++++|.+|.++.+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhF-yqyGeirsi~~~~-----~~~CAFv~ftTR~aAE~Aae~~~ 285 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHF-YQYGEIRSIRILP-----RKGCAFVTFTTREAAEKAAEKSF 285 (377)
T ss_pred ceeEEEecccccchhHHHHHHHH-hhcCCeeeEEeec-----ccccceeeehhhHHHHHHHHhhc
Confidence 34899999999999999999999 9999999999988 67899999999999999998876
No 116
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=97.86 E-value=4e-05 Score=59.07 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=36.7
Q ss_pred HHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 135 LYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 135 LreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
|+++| ++||+|..+.+..++ +|+|||+|.+.++|.+|++..+
T Consensus 1 L~~~f-~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~ 42 (56)
T PF13893_consen 1 LYKLF-SKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLN 42 (56)
T ss_dssp HHHHH-TTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHT
T ss_pred ChHHh-CCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhC
Confidence 68899 999999999987744 6999999999999999999765
No 117
>KOG0116|consensus
Probab=97.84 E-value=1.9e-05 Score=85.19 Aligned_cols=70 Identities=27% Similarity=0.333 Sum_probs=59.6
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceeeccc
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVKSGR 188 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk~~k 188 (534)
..+|||+|||.+++.++|++.| ..||.|...+|..-. .++...||||+|.+.+++..||++.-+.+...+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~F-k~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~k 358 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVF-KQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRK 358 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHH-hhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCee
Confidence 4569999999999999999999 999999999998854 333349999999999999999999866665433
No 118
>KOG4209|consensus
Probab=97.81 E-value=2.1e-05 Score=78.85 Aligned_cols=84 Identities=14% Similarity=0.041 Sum_probs=73.4
Q ss_pred CCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHHhhcCCCCccccce
Q psy3698 18 FSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILGQWATEGNLCGRVE 95 (534)
Q Consensus 18 ~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq~ssr~i~~k~VQ 95 (534)
....++.+.|||||+.+.+|-+++...|+.||.|..+.+..|+.++ .+|||+||+|.+ .++.++++....+.++.+.
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~-~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRG-HPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIE 173 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCC-CcceeEEEecccHhhhHHHhhcCCcccccccce
Confidence 4678889999999999999999999999999999988999998888 799999999933 8999999888888888887
Q ss_pred ecccccC
Q psy3698 96 VVPWAIS 102 (534)
Q Consensus 96 VrPw~ls 102 (534)
+..+...
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 7765544
No 119
>KOG4208|consensus
Probab=97.74 E-value=7e-05 Score=73.72 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=56.5
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcC-CCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLF-GDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~F-G~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
...-++|+.+|.-+.+.+|..+| .+| |.|..+++.+.+ ||.+||||||.|++.+.|.-|-+.++
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~-~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMN 113 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYF-RQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMN 113 (214)
T ss_pred CccceeecccccchhHHHHhhhh-hhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhh
Confidence 34568999999999999999999 666 777788887887 99999999999999999999988876
No 120
>KOG4206|consensus
Probab=97.73 E-value=7.8e-05 Score=74.08 Aligned_cols=64 Identities=23% Similarity=0.371 Sum_probs=55.5
Q ss_pred CCCCceeEeccccCcCCHHHHHH----HhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYN----VMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLre----iF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+..||||.||...+..++|+. +| ++||.|++|... ++.+.||.|||.|.+.++|-.|+.+..
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LF-sqfG~ildI~a~--kt~KmRGQA~VvFk~~~~As~A~r~l~ 73 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLF-SQFGKILDISAF--KTPKMRGQAFVVFKETEAASAALRALQ 73 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHH-HhhCCeEEEEec--CCCCccCceEEEecChhHHHHHHHHhc
Confidence 34556999999999999999998 99 999999987654 477789999999999999999998754
No 121
>KOG0415|consensus
Probab=97.70 E-value=3.6e-05 Score=80.82 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=61.2
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhc-Cceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAA-FIEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~-~veIk 185 (534)
.|...|||.-|-+-+|+++|.-+| +.||.|+.|.|++|. ||.+--||||+|++.+++.+|--++ +|-|.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIF-SrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID 307 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIF-SRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID 307 (479)
T ss_pred CCcceEEEEecCCcccccchhhHH-hhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec
Confidence 456889999999999999999999 999999999999997 9999999999999999999986443 34443
No 122
>KOG0153|consensus
Probab=97.70 E-value=6.8e-05 Score=78.50 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=57.6
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh--cCCCCccccceec
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW--ATEGNLCGRVEVV 97 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~--ssr~i~~k~VQVr 97 (534)
....+||||||-..++|.+|++.|.+||+|..+.+... +|+|||+| +. +|+.|.++ +.-.|.+..+.++
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-------cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 45678999999989999999999999999998877653 46999999 55 77777665 3345566677776
Q ss_pred ccccC
Q psy3698 98 PWAIS 102 (534)
Q Consensus 98 Pw~ls 102 (534)
|...
T Consensus 299 -Wg~~ 302 (377)
T KOG0153|consen 299 -WGRP 302 (377)
T ss_pred -eCCC
Confidence 6654
No 123
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=97.65 E-value=9.5e-05 Score=56.97 Aligned_cols=50 Identities=18% Similarity=0.039 Sum_probs=37.7
Q ss_pred HHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 41 LLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 41 Lre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
|+++|++||+|..+.+.++. +|+|||+| +. +|++|++. ++..+.++.+.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V 53 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKV 53 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 78999999999998887753 48999999 55 88888874 555566665554
No 124
>KOG0533|consensus
Probab=97.61 E-value=0.00014 Score=73.47 Aligned_cols=67 Identities=13% Similarity=0.271 Sum_probs=61.8
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceeec
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVKS 186 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk~ 186 (534)
.+|.|.|||..++++||+++| +.||.+..+.|..|+.|.+.|.|-|+|...++|.+||+..+ |.+..
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF-~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG 151 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELF-AEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDG 151 (243)
T ss_pred ceeeeecCCcCcchHHHHHHH-HHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCC
Confidence 779999999999999999999 99999999999999999999999999999999999999866 44443
No 125
>KOG1365|consensus
Probab=97.54 E-value=0.00055 Score=72.77 Aligned_cols=147 Identities=13% Similarity=0.029 Sum_probs=98.9
Q ss_pred EEEeCCCCCCCHHHHHHHhhccC----CeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceecccc
Q psy3698 27 IFIGGVPWDTPEYLLLTVFSQFG----PVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVVPWA 100 (534)
Q Consensus 27 VFVGNLP~diTEeeLre~FsqFG----~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVrPw~ 100 (534)
|=..+|||...+.+|..+|.--- -+..|.... + +-.|.|.|.| ++ .-+-+++.....|..+.+.+-...
T Consensus 63 vRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~q----g-rRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 63 VRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQ----G-RRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKAT 137 (508)
T ss_pred EEecCCCCCcccCCHHHHHhhhhccccceeeeehhh----h-ccccceEEEecCchhhhhhhHhhhhhccCCceeeeccC
Confidence 34589999999999999997532 222332222 2 3348999999 44 777788876666666666654221
Q ss_pred cCCCCCCCC----CCCCCC--CCCceeEeccccCcCCHHHHHHHhhhc----CCCeEEEEEecCCCCCCceEEEEEeCCH
Q psy3698 101 ISDSNYSPQ----GHSTKL--EPGKTIFVGALHGRLTAQALYNVMNDL----FGDVVYAGIDTDKHKYPIGSGRITFGST 170 (534)
Q Consensus 101 lsds~~~~~----~~s~~~--d~~ktIFVGNLP~~~TeedLreiF~s~----FG~Vv~V~I~~DkTG~pKGfGFVtF~d~ 170 (534)
..+-..... ...... ...--|-+.+||+++|+.|+.++| .. -|.++.|-+++.+.|++.|-|||.|..+
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF-~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFF-GPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhc-CCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 111100000 001111 112345679999999999999999 31 3567777778877999999999999999
Q ss_pred HHHHHHHHh
Q psy3698 171 RAYSDAIRA 179 (534)
Q Consensus 171 EsA~kAIea 179 (534)
+.|+.||.+
T Consensus 217 e~aq~aL~k 225 (508)
T KOG1365|consen 217 EDAQFALRK 225 (508)
T ss_pred HHHHHHHHH
Confidence 999999876
No 126
>KOG4661|consensus
Probab=97.54 E-value=0.00011 Score=80.76 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=58.5
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.++|||.+|...+.+.+|+.+| ++||+|+-++|+++. +--.+.||||++.+.++|.++|+.++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlF-SKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLH 468 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLF-SKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLH 468 (940)
T ss_pred ccceeeeccccchhhhHHHHHH-HHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhh
Confidence 4889999999999999999999 999999999999986 55569999999999999999999876
No 127
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.51 E-value=0.00052 Score=60.51 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=53.6
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcC-CCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLF-GDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~F-G~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.||-|.|+|...|.++|.+++++.+ |....+-+++|- ++-..|||||.|.+++.+.+-.+..+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~ 66 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFN 66 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHc
Confidence 5899999999999999999996664 556666788886 88899999999999999988776643
No 128
>KOG1190|consensus
Probab=97.51 E-value=0.001 Score=71.21 Aligned_cols=148 Identities=12% Similarity=0.057 Sum_probs=101.4
Q ss_pred cCeEEEeCCCC-CCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHHhh-cCCCCccccceeccc
Q psy3698 24 SNKIFIGGVPW-DTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILGQW-ATEGNLCGRVEVVPW 99 (534)
Q Consensus 24 SrKVFVGNLP~-diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq~-ssr~i~~k~VQVrPw 99 (534)
.+-|-|.||-. .+|++.|..+|.-||.|..++|..++.. -|.|.+.| .|+-|++. .+..+-++.+.+..-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd------~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD------NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc------ceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 36788888854 5799999999999999999999887654 49999966 55555543 444444455444321
Q ss_pred cc----------CCCCCCCCCC---------------CCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecC
Q psy3698 100 AI----------SDSNYSPQGH---------------STKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTD 154 (534)
Q Consensus 100 ~l----------sds~~~~~~~---------------s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~D 154 (534)
+. .|..+..... ..-..+..++...|+|.+++||+|++.| ..-|.++.+..-
T Consensus 371 KH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f-~~~g~~vkafkf-- 447 (492)
T KOG1190|consen 371 KHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLF-QEPGGQVKAFKF-- 447 (492)
T ss_pred cCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhh-hcCCceEEeeee--
Confidence 11 1222221100 0012456889999999999999999999 666766555432
Q ss_pred CCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 155 KHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 155 kTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.++.+-+|.+.+++.|.|..|+-..+
T Consensus 448 -f~kd~kmal~q~~sveeA~~ali~~h 473 (492)
T KOG1190|consen 448 -FQKDRKMALPQLESVEEAIQALIDLH 473 (492)
T ss_pred -cCCCcceeecccCChhHhhhhccccc
Confidence 23345689999999999999986653
No 129
>KOG4660|consensus
Probab=97.49 E-value=0.0001 Score=80.93 Aligned_cols=69 Identities=12% Similarity=0.174 Sum_probs=53.5
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHHhh-cCCCCccccce
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq~-ssr~i~~k~VQ 95 (534)
....+.|+|-|||.++++++|+.+|+.||+|+.+.. +. ..+|..||+|-| .|++||++ +.+.|.++.++
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----cc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345689999999999999999999999999987322 22 457999999933 78888876 55566655554
No 130
>KOG0226|consensus
Probab=97.48 E-value=9e-05 Score=75.04 Aligned_cols=78 Identities=9% Similarity=0.015 Sum_probs=64.8
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHHh-hcCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILGQ-WATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq-~ssr~i~~k~VQ 95 (534)
+.+.+.-+||.|.|--+++.+-|-..|.+|-.-....+++|+.|+ +++||+||.|.+ +..+|+. +..+.+..+.+.
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTg-KSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTG-KSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhcccccccccc-ccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 445556789999999999999999999999999999999999999 999999999943 5555555 466777776666
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
.+
T Consensus 264 lR 265 (290)
T KOG0226|consen 264 LR 265 (290)
T ss_pred hh
Confidence 55
No 131
>KOG4209|consensus
Probab=97.44 E-value=0.00015 Score=72.79 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=64.4
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceeeccce
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVKSGRI 189 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk~~k~ 189 (534)
.....+||||+.+.+|.+++...| +-+|.|..+.|..|+ ++.+||||||.|.+.+.++.|++....++....+
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf-~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i 172 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHF-ESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAI 172 (231)
T ss_pred cCCceEEEeccccccccchhhhee-eccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccc
Confidence 345789999999999999999999 999999999999999 7789999999999999999999966656655444
No 132
>KOG4454|consensus
Probab=97.43 E-value=0.0001 Score=73.44 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=59.0
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
+..+||||+||-..++|+-|.++| -.-|.|..|.|..++.+.+| ||||.|.++-++.-|++-.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~Elf-iqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~n 70 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELF-IQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLEN 70 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHh-hccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcc
Confidence 346899999999999999999999 89999999999999988889 99999999999999987644
No 133
>KOG4307|consensus
Probab=97.25 E-value=0.00062 Score=76.57 Aligned_cols=156 Identities=8% Similarity=-0.100 Sum_probs=105.7
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceecc--
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVVP-- 98 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVrP-- 98 (534)
+.+.+=+.+.+++..+.+++++|---- |....+.++...+ .-.|-++|.| .- ++++|++.....+..|.+|+.|
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v~~-~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRVAP-PQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCccc-ccccchhhhhcCC-CcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 345666789999999999999986422 3333444444422 2368999999 55 8888888755555566676654
Q ss_pred ---cccCCCCC--CC-------C-----------CCCC----CCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEE-EE
Q psy3698 99 ---WAISDSNY--SP-------Q-----------GHST----KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVY-AG 150 (534)
Q Consensus 99 ---w~lsds~~--~~-------~-----------~~s~----~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~-V~ 150 (534)
|....... .. + ...+ .-.....|||..||.++++.++-++| ..--.|++ +.
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f-~~~~~Ved~I~ 466 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKF-MGAAAVEDFIE 466 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhh-hhhhhhhheeE
Confidence 22111000 00 0 0000 11235789999999999999999999 44445555 66
Q ss_pred EecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 151 IDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 151 I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
|..-++++-++.|||.|..++++.+|+.-+.
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~ 497 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKT 497 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhccc
Confidence 6666789999999999999999888887654
No 134
>KOG4661|consensus
Probab=97.24 E-value=0.00049 Score=75.93 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=58.1
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe--hHHHHHHHhh-cCCCCccccce
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI--SELVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF--sEsAeaALq~-ssr~i~~k~VQ 95 (534)
.....|.|||.+|.-.+-..+|+.+|++||+|+-++|+.+..+. --|.|+||++ +++|-++|+. ....+.++.|.
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsP-GaRCYGfVTMSts~eAtkCI~hLHrTELHGrmIS 478 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSP-GARCYGFVTMSTSAEATKCIEHLHRTELHGRMIS 478 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCC-CcceeEEEEecchHHHHHHHHHhhhhhhcceeee
Confidence 34567899999999999999999999999999999988877665 6789999999 3366666664 33334444433
No 135
>KOG1457|consensus
Probab=97.12 E-value=0.0019 Score=64.77 Aligned_cols=65 Identities=22% Similarity=0.191 Sum_probs=52.5
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEE-ecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGI-DTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I-~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
+..+||||.+||.++...+|..+| ..|-.-+.+.| .+++ .+--+-+|||+|.++++|++|+.+.+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLF-R~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLN 98 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLF-RRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALN 98 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHh-ccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhc
Confidence 446999999999999999999999 77766666554 3333 23346799999999999999998866
No 136
>KOG0533|consensus
Probab=97.10 E-value=0.0014 Score=66.41 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=54.2
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW 84 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ 84 (534)
.+.-+.+|.|.|||+.+++++|+++|++||++..+-+..++. | ++.|.|=|+| .. +|.+|++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G-~s~Gta~v~~~r~~DA~~avk~ 143 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-G-RSLGTADVSFNRRDDAERAVKK 143 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-C-CCCccceeeecchHhHHHHHHH
Confidence 444557899999999999999999999999988888888765 6 8899999999 44 88888876
No 137
>KOG1456|consensus
Probab=97.09 E-value=0.035 Score=59.31 Aligned_cols=147 Identities=16% Similarity=0.085 Sum_probs=97.4
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHHhh---cCCCCccccc
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILGQW---ATEGNLCGRV 94 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq~---ssr~i~~k~V 94 (534)
.+..+--|-|.+|-..++|.+|.+..+.||+|..+..|-.+. -|.|+|.+ .++++++. +...+.+...
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r-------~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR-------QALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc-------eeeeeeccccchhhheehhccCcccccCchh
Confidence 345566799999999999999999999999998877665332 58999954 77777765 1111221111
Q ss_pred eecccccCCCCCCCCCCCCCCCCCceeE--eccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHH
Q psy3698 95 EVVPWAISDSNYSPQGHSTKLEPGKTIF--VGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRA 172 (534)
Q Consensus 95 QVrPw~lsds~~~~~~~s~~~d~~ktIF--VGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~Es 172 (534)
-+. .+.+............+.+.|. |=|--+.+|.+-|..+- ...|.|.++.|.. ++| =.|.|+|++.+.
T Consensus 100 l~N---yStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Ic-np~GkVlRIvIfk-kng---VQAmVEFdsv~~ 171 (494)
T KOG1456|consen 100 LFN---YSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTIC-NPQGKVLRIVIFK-KNG---VQAMVEFDSVEV 171 (494)
T ss_pred hcc---cchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhc-CCCCceEEEEEEe-ccc---eeeEEeechhHH
Confidence 000 0100000000111112333333 44556789999999999 8999999998877 233 369999999999
Q ss_pred HHHHHHhcC
Q psy3698 173 YSDAIRAAF 181 (534)
Q Consensus 173 A~kAIea~~ 181 (534)
|++|-++.+
T Consensus 172 AqrAk~alN 180 (494)
T KOG1456|consen 172 AQRAKAALN 180 (494)
T ss_pred HHHHHhhcc
Confidence 999988766
No 138
>KOG0128|consensus
Probab=97.04 E-value=7e-05 Score=85.39 Aligned_cols=158 Identities=14% Similarity=-0.013 Sum_probs=113.1
Q ss_pred CCCCccCeEEEeCCCCCCCHH-HHHHHhhccCCeeEEeecCCCCCCCCCCc-EEEEEe-hH-HHHHHHhhcCCCCccccc
Q psy3698 19 SDEILSNKIFIGGVPWDTPEY-LLLTVFSQFGPVKVEWPQGTPESPTAPKA-ISLDVI-SE-LVLILGQWATEGNLCGRV 94 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEe-eLre~FsqFG~V~~v~~~rD~~Tg~rsRG-YAFVtF-sE-sAeaALq~ssr~i~~k~V 94 (534)
..+...++..+-++.+...+. ..+..|..+|.|..+.+.+... . .+.+ ++++++ .. +++.++......+..+..
T Consensus 566 ~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~-k-~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~ 643 (881)
T KOG0128|consen 566 EAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGF-K-AHEQPQQQKVQSKHGSAESATVPAGGALANRSA 643 (881)
T ss_pred hhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccc-c-ccccchhhhhhccccchhhcccccccccCCccc
Confidence 445556788888888887776 5788899999998877665222 1 2333 889999 55 888888775555554443
Q ss_pred eecccccCCCCCCCCCCCCCC-----CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeC
Q psy3698 95 EVVPWAISDSNYSPQGHSTKL-----EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFG 168 (534)
Q Consensus 95 QVrPw~lsds~~~~~~~s~~~-----d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~ 168 (534)
.+.+ .+..-.. ...+. ..-.++||.||+..+.+++|...| ..+|.+..++|.+.. .++.||.|+|.|.
T Consensus 644 av~~---ad~~~~~--~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~-~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~ 717 (881)
T KOG0128|consen 644 AVGL---ADAEEKE--ENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERF-SPSGTIEVVQIVIHKNEKRFRGKAYVEFL 717 (881)
T ss_pred cCCC---CCchhhh--hccCcCchHHHHHHHHHHhhcchhhcCchhhhhc-CccchhhhHHHHHHhhccccccceeeEee
Confidence 3321 1111110 11111 123679999999999999999999 999999999988666 8999999999999
Q ss_pred CHHHHHHHHHhcCcee
Q psy3698 169 STRAYSDAIRAAFIEV 184 (534)
Q Consensus 169 d~EsA~kAIea~~veI 184 (534)
..+.+.+||..+...+
T Consensus 718 ~~~~~~aaV~f~d~~~ 733 (881)
T KOG0128|consen 718 KPEHAGAAVAFRDSCF 733 (881)
T ss_pred cCCchhhhhhhhhhhh
Confidence 9999999998876333
No 139
>KOG1456|consensus
Probab=96.80 E-value=0.017 Score=61.57 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=104.3
Q ss_pred ccCeEEEeCCCCC-CCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee--
Q psy3698 23 LSNKIFIGGVPWD-TPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV-- 96 (534)
Q Consensus 23 ~SrKVFVGNLP~d-iTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV-- 96 (534)
..+-+-|-||... +.-+.|-.+|-.||.|..++.|+.+. |-|.|+. .+ ++++++.. +.-.+-+..+++
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~------gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP------GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc------ceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 3467888899875 46678999999999999999998643 6899999 66 99999986 333333333333
Q ss_pred ---------cccccCCCC-----CCCC-----------CCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEE
Q psy3698 97 ---------VPWAISDSN-----YSPQ-----------GHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGI 151 (534)
Q Consensus 97 ---------rPw~lsds~-----~~~~-----------~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I 151 (534)
.|+.+.|.. |... ..+.-..+.+.|..-|.|..+||+.|.++|+++=-.-+.++|
T Consensus 360 SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkv 439 (494)
T KOG1456|consen 360 SKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKV 439 (494)
T ss_pred ccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEe
Confidence 222222211 1110 011112456888889999999999999999655444455555
Q ss_pred ecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 152 DTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 152 ~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
-.-++.++ -.|.++|++.++|..||...+
T Consensus 440 Fp~kserS-ssGllEfe~~s~Aveal~~~N 468 (494)
T KOG1456|consen 440 FPLKSERS-SSGLLEFENKSDAVEALMKLN 468 (494)
T ss_pred eccccccc-ccceeeeehHHHHHHHHHHhc
Confidence 44444332 468999999999999998865
No 140
>KOG4660|consensus
Probab=96.75 E-value=0.0017 Score=71.62 Aligned_cols=66 Identities=18% Similarity=0.151 Sum_probs=55.7
Q ss_pred CCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 111 HSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 111 ~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
+.....+..+|+|-|||..+++++|+.+| +.||+|..|+... ..+|.-||+|-|..+|++|+++..
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f-~~yGeir~ir~t~----~~~~~~~v~FyDvR~A~~Alk~l~ 133 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIF-GAYGEIREIRETP----NKRGIVFVEFYDVRDAERALKALN 133 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHH-Hhhcchhhhhccc----ccCceEEEEEeehHhHHHHHHHHH
Confidence 44445567899999999999999999999 9999999865433 357899999999999999998854
No 141
>KOG0151|consensus
Probab=96.53 E-value=0.0033 Score=71.14 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=56.7
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC----CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK----HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk----TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
+.+||||||+..++++.|-..| ..||.|..++|+--. ..+.+-+|||.|.+..++++|++...
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tf-GrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lq 240 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTF-GRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQ 240 (877)
T ss_pred ccceeeecCCccccHHHHHHHh-cccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhc
Confidence 5789999999999999999999 999999999986543 56678999999999999999998876
No 142
>KOG0151|consensus
Probab=96.50 E-value=0.0077 Score=68.30 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=52.8
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCC--CCCCCcEEEEEe-hH-HHHHHHhh
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPES--PTAPKAISLDVI-SE-LVLILGQW 84 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~T--g~rsRGYAFVtF-sE-sAeaALq~ 84 (534)
..+...||||||++.++|+.|-..|..||+|..++||..+.- .++.+-+|||.| +. ++++|++.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~ 238 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKE 238 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHH
Confidence 345578999999999999999999999999988887764421 235678999999 66 88888886
No 143
>KOG0106|consensus
Probab=96.45 E-value=0.0017 Score=64.73 Aligned_cols=54 Identities=20% Similarity=0.365 Sum_probs=49.1
Q ss_pred eeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 120 TIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 120 tIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.||||+||..+.+.+|..+| ..||.|..|.+.. |||||.|.+..+|.-||-..+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f-~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~ 56 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFF-KGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLD 56 (216)
T ss_pred ceeecccCCccchhHHHHHH-hhccccccceeec-------ccceeccCchhhhhcccchhc
Confidence 59999999999999999999 9999999987755 899999999999999987655
No 144
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.43 E-value=0.007 Score=53.82 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=37.0
Q ss_pred eeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 120 TIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 120 tIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.|+|.+++..++.++|++.| +.||.|.+|.+... ---|+|-|.+.++|.+|+++..
T Consensus 3 il~~~g~~~~~~re~iK~~f-~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAF-SQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT--SS--EEEEE--TT------SEEEEEESS---HHHHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHH-HhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHH
Confidence 47788899999999999999 88999999887663 3378999999999999998754
No 145
>KOG1548|consensus
Probab=96.18 E-value=0.011 Score=62.51 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=56.2
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeE--------EEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVV--------YAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv--------~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
...|||.|||.++|-+++.++| +++|-|. .|++-+|..|..||=|.++|...+++.-||+-..
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~-sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilD 204 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVM-SKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILD 204 (382)
T ss_pred CceEEecCCCCcccHHHHHHHH-HhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhC
Confidence 4669999999999999999999 9999775 3567778789999999999999999999998765
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.77 E-value=0.033 Score=49.24 Aligned_cols=59 Identities=8% Similarity=0.115 Sum_probs=45.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhcc--CCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQF--GPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW 84 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqF--G~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ 84 (534)
.+|-|.|||...|.++|.+++... |..--.-+..|..++ .+.|||||-| +. ++.+..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~-~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNK-CNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCC-CceEEEEEEcCCHHHHHHHHHH
Confidence 479999999999999999998763 444445566777776 8999999999 44 66665553
No 147
>KOG4210|consensus
Probab=95.76 E-value=0.011 Score=61.30 Aligned_cols=66 Identities=17% Similarity=0.063 Sum_probs=52.8
Q ss_pred CeEE-EeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHHhhcCCCCcc
Q psy3698 25 NKIF-IGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILGQWATEGNLC 91 (534)
Q Consensus 25 rKVF-VGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq~ssr~i~~ 91 (534)
.++| |++|++++|+++|+..|..+|.|..+.+..+..++ .++|||||.|.. ....++....+.+.+
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~-~~kg~a~~~~~~~~~~~~~~~~~~~~~~~ 253 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESG-DSKGFAYVDFSAGNSKKLALNDQTRSIGG 253 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCcc-chhhhhhhhhhhchhHHHHhhcccCcccC
Confidence 4566 99999999999999999999999999999999988 999999999933 444444423344433
No 148
>KOG4849|consensus
Probab=95.66 E-value=0.0095 Score=63.03 Aligned_cols=65 Identities=18% Similarity=0.114 Sum_probs=51.5
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCC--eeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcc
Q psy3698 26 KIFIGGVPWDTPEYLLLTVFSQFGP--VKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLC 91 (534)
Q Consensus 26 KVFVGNLP~diTEeeLre~FsqFG~--V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~ 91 (534)
-+|||||-|.+|+++|.+.....|- +.+++...++.+| ++||||.|.. +| ++++.++. -.+++.+
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NG-QSKG~AL~~~~SdAa~Kq~MeiLP~k~iHG 151 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNG-QSKGYALLVLNSDAAVKQTMEILPTKTIHG 151 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCC-cccceEEEEecchHHHHHHHHhcccceecC
Confidence 4899999999999999999988874 3455555677777 9999999999 88 88888875 3344443
No 149
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.18 E-value=0.047 Score=42.88 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=41.3
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHH
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAI 177 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAI 177 (534)
+.|-|.+.+....+. +...| ..||+|+...+.. .+-+.+|.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F-~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHF-ASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHH-HhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 457788888776655 44588 6899999988873 3568999999999999996
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.13 E-value=0.045 Score=48.68 Aligned_cols=53 Identities=15% Similarity=-0.047 Sum_probs=33.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW 84 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ 84 (534)
+-|.|.|++..++-++|+++|++||.|.-+...+... -|||.| .+ +|++|++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~-------~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT-------EGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S-------EEEEEESS---HHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC-------EEEEEECCcchHHHHHHH
Confidence 3478888999999999999999999998777666433 589999 55 78888875
No 151
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.10 E-value=0.049 Score=42.75 Aligned_cols=50 Identities=20% Similarity=0.120 Sum_probs=37.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHH
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILG 82 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaAL 82 (534)
+.|-|.|.+.+..+. +...|.+||+|....+... .-+.||.| ++ ++++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~-------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES-------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC-------CcEEEEEECCHHHHHhhC
Confidence 567888999887765 5558999999988665522 23899999 77 888875
No 152
>KOG4676|consensus
Probab=94.87 E-value=0.023 Score=60.87 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=95.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCC--CCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceecccc-
Q psy3698 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTP--ESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVVPWA- 100 (534)
Q Consensus 26 KVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~--~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVrPw~- 100 (534)
-|=|.||.+.+|.++++.+|.-.|+|..+.++-.. .+-....-.|||.| .. +|..|-.+....+-.+.+.|+|+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~ 88 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGD 88 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCC
Confidence 57899999999999999999999999887766422 21113446899999 33 333332221110111111111110
Q ss_pred -----------cCCCCCCC-------------------C-------CCCCC-------C-CCCceeEeccccCcCCHHHH
Q psy3698 101 -----------ISDSNYSP-------------------Q-------GHSTK-------L-EPGKTIFVGALHGRLTAQAL 135 (534)
Q Consensus 101 -----------lsds~~~~-------------------~-------~~s~~-------~-d~~ktIFVGNLP~~~TeedL 135 (534)
+.+.+.+. + .+... + +..++|+|++|+..+-..++
T Consensus 89 ~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~ 168 (479)
T KOG4676|consen 89 EVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPES 168 (479)
T ss_pred CCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhh
Confidence 00100000 0 00000 0 12378999999999999999
Q ss_pred HHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCcee
Q psy3698 136 YNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEV 184 (534)
Q Consensus 136 reiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veI 184 (534)
-+.| +.+|+|.++.+.-... .-+.-|.|....+...|+++...+.
T Consensus 169 ~e~f-~r~Gev~ya~~ask~~---s~~c~~sf~~qts~~halr~~gre~ 213 (479)
T KOG4676|consen 169 GESF-ERKGEVSYAHTASKSR---SSSCSHSFRKQTSSKHALRSHGRER 213 (479)
T ss_pred hhhh-hhcchhhhhhhhccCC---CcchhhhHhhhhhHHHHHHhcchhh
Confidence 9999 8899999988755332 2234488988888888888765333
No 153
>KOG1855|consensus
Probab=94.66 E-value=0.042 Score=59.53 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=54.5
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecC------CCCCC--------ceEEEEEeCCHHHHHHHHHhcC
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTD------KHKYP--------IGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~D------kTG~p--------KGfGFVtF~d~EsA~kAIea~~ 181 (534)
+.++|.+-|||.+-.-+.|.++| ..+|.|..|+|..- -.+.+ +-+|+|+|+..+.|.||.+-.+
T Consensus 230 ~srtivaenLP~Dh~~enl~kiF-g~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIF-GTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHh-hcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 67999999999999999999999 99999999998553 23333 5679999999999999987764
No 154
>KOG1995|consensus
Probab=94.63 E-value=0.032 Score=59.09 Aligned_cols=63 Identities=22% Similarity=0.211 Sum_probs=54.7
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEE--------EEEecCC-CCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVY--------AGIDTDK-HKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~--------V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea 179 (534)
....+|||=+||..+++++|.++| .+.|.|.. +.|.+|+ |+.+||-|-|+|++...|++||.-
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f-~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFF-LQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred cccccceeeccCccchHHHHHHHH-hhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhh
Confidence 345789999999999999999999 88887753 3366676 999999999999999999999865
No 155
>KOG1995|consensus
Probab=92.98 E-value=0.12 Score=54.99 Aligned_cols=63 Identities=22% Similarity=0.163 Sum_probs=54.1
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeE--------EeecCCCCCCCCCCcEEEEEehH--HHHHHHhh
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKV--------EWPQGTPESPTAPKAISLDVISE--LVLILGQW 84 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~--------v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq~ 84 (534)
....-+|||-+||..+++++|.++|.++|.|.. +++-+|+.|+ ++||=|.|+|.+ +|++|+..
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~-~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETG-APKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcccccccc-CcCCceeeeecChhhhhhhhhh
Confidence 556678999999999999999999999999943 5666788888 999999999944 88888875
No 156
>KOG1855|consensus
Probab=92.79 E-value=0.15 Score=55.38 Aligned_cols=66 Identities=21% Similarity=0.201 Sum_probs=52.0
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCC---CCC--CCC-------CCcEEEEEeh--HHHHHHHhh
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGT---PES--PTA-------PKAISLDVIS--ELVLILGQW 84 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD---~~T--g~r-------sRGYAFVtFs--EsAeaALq~ 84 (534)
.++..+|+|.+-|||.|-.-+-|.++|+.+|.|..+.|.+. ... ++. .+-+|+|+|. ++|++|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 56688999999999999999999999999999998888776 221 111 2457999993 377777765
No 157
>KOG4849|consensus
Probab=92.49 E-value=0.092 Score=55.84 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=48.4
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCC--eEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGD--VVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~--Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea 179 (534)
.+..+|||||-+.+|++||.+.+ ..-|- +.++++.-+. +|.+||||.|...+..+..+-++-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~-~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~Mei 143 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKAL-QSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEI 143 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHH-HhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHh
Confidence 45789999999999999999988 55553 3344444444 899999999999998887776654
No 158
>KOG0115|consensus
Probab=92.49 E-value=0.11 Score=53.26 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=57.5
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhc
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAA 180 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~ 180 (534)
.+.|+|-||..-+..+.|.+.| +.||.|..+.+..|..+++-|-++|.|...-.+.+|+..-
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f-~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAF-RRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred cceEEEEecchhhhhHHHHHhh-hhcCccchheeeecccccccccchhhhhcchhHHHHHHHh
Confidence 3679999999999999999999 9999999999999999999999999999999999998763
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.91 E-value=0.22 Score=52.84 Aligned_cols=74 Identities=7% Similarity=0.147 Sum_probs=53.2
Q ss_pred CCCCCCCCceeEeccccCcCCHHHH------HHHhhhcCCCeEEEEEecCC-C-CCCceEE--EEEeCCHHHHHHHHHhc
Q psy3698 111 HSTKLEPGKTIFVGALHGRLTAQAL------YNVMNDLFGDVVYAGIDTDK-H-KYPIGSG--RITFGSTRAYSDAIRAA 180 (534)
Q Consensus 111 ~s~~~d~~ktIFVGNLP~~~TeedL------reiF~s~FG~Vv~V~I~~Dk-T-G~pKGfG--FVtF~d~EsA~kAIea~ 180 (534)
...++..+.-+||-+||..+-.|+. .++| .+||+|..+.|.... . .---+.+ +|+|.+.|+|.+||++.
T Consensus 107 sniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyF-GQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~v 185 (480)
T COG5175 107 SNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYF-GQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEV 185 (480)
T ss_pred ccceeeecceeEEecCCCCCCcccccccccchhhh-hhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHh
Confidence 3444555677899999999988773 3789 999999988776533 1 1112323 99999999999999986
Q ss_pred Cceee
Q psy3698 181 FIEVK 185 (534)
Q Consensus 181 ~veIk 185 (534)
...+-
T Consensus 186 Dgs~~ 190 (480)
T COG5175 186 DGSLL 190 (480)
T ss_pred ccccc
Confidence 54443
No 160
>KOG2193|consensus
Probab=91.36 E-value=0.11 Score=56.52 Aligned_cols=132 Identities=16% Similarity=0.125 Sum_probs=87.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCC-eeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCC--CCccccceeccc
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGP-VKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATE--GNLCGRVEVVPW 99 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~-V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr--~i~~k~VQVrPw 99 (534)
.|+|+|||...++..+|+.+|..--. ..-.++++ -||+||.. .+ -+.++++..+. .+.++..++.-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k--------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~- 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK--------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEH- 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee--------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccc-
Confidence 58999999999999999999976411 11112222 38999999 55 66677765332 23334333320
Q ss_pred ccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEE-ecCC-CCCCceEEEEEeCCHHHHHHHH
Q psy3698 100 AISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGI-DTDK-HKYPIGSGRITFGSTRAYSDAI 177 (534)
Q Consensus 100 ~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I-~~Dk-TG~pKGfGFVtF~d~EsA~kAI 177 (534)
.-.+....+++=|.|+|.-..++-|..++ ..||.|..+.. .+|. + -.--|+|...+.+..||
T Consensus 73 -----------sv~kkqrsrk~Qirnippql~wevld~Ll-~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai 136 (584)
T KOG2193|consen 73 -----------SVPKKQRSRKIQIRNIPPQLQWEVLDSLL-AQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAI 136 (584)
T ss_pred -----------hhhHHHHhhhhhHhcCCHHHHHHHHHHHH-hccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHH
Confidence 00011224568899999999999999999 99999998864 3433 2 11236777888888888
Q ss_pred HhcC
Q psy3698 178 RAAF 181 (534)
Q Consensus 178 ea~~ 181 (534)
....
T Consensus 137 ~kl~ 140 (584)
T KOG2193|consen 137 HKLN 140 (584)
T ss_pred Hhhc
Confidence 7644
No 161
>KOG2314|consensus
Probab=91.26 E-value=0.27 Score=55.12 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=51.7
Q ss_pred CceeEeccccCcCCH--HH----HHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 118 GKTIFVGALHGRLTA--QA----LYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 118 ~ktIFVGNLP~~~Te--ed----LreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
...|+|.|+|---.+ +. |.++| +++|+|+...++.|+.|..+|+.|++|.+..+|+.||+..+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvf-sk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~ 126 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVF-SKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLN 126 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHH-HhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcc
Confidence 356888888753322 22 34678 89999999999999966699999999999999999999865
No 162
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=91.23 E-value=0.69 Score=40.51 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=36.7
Q ss_pred ceeEeccccCcCCHHHHH----HHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCc
Q psy3698 119 KTIFVGALHGRLTAQALY----NVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFI 182 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLr----eiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~v 182 (534)
..|+|.|||.+.+...++ ++++-.=|+|..| ..|.|.|.|.+++.|.+|.+.+.-
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmeg 61 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEG 61 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcc
Confidence 358999999999887655 5553334567665 358999999999999999988763
No 163
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=89.13 E-value=0.88 Score=40.51 Aligned_cols=68 Identities=12% Similarity=-0.049 Sum_probs=43.0
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEe-ecCCCC-----CCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcc
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEW-PQGTPE-----SPTAPKAISLDVI-SE-LVLILGQWATEGNLC 91 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~-~~rD~~-----Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~ 91 (534)
..+-|-|=|-|.. ....+.+.|++||+|++.. +.++.. ..........|+| +. +|++||+.++..+.+
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g 80 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSG 80 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETT
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcC
Confidence 3456888899988 5667889999999998764 222110 0002246999999 77 999999987666554
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=89.09 E-value=1.2 Score=39.76 Aligned_cols=66 Identities=9% Similarity=-0.033 Sum_probs=43.5
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEE-EecC-------CCCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAG-IDTD-------KHKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~-I~~D-------kTG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
..-|.|-+.|... ...+.+.| ++||.|++.. +..+ +......+-.|+|+++.+|.+||+.....+.
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F-~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~ 79 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHF-SSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFS 79 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHH-HCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEET
T ss_pred CeEEEEEccCHHH-HHHHHHHH-HhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEc
Confidence 3457788999884 45577789 8999998875 1111 1112456889999999999999998775554
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=87.83 E-value=0.99 Score=48.17 Aligned_cols=71 Identities=13% Similarity=-0.004 Sum_probs=46.3
Q ss_pred cCeEEEeCCCCCCCHHHH------HHHhhccCCeeEEeecCCCCCCCCCCc--EEEEEe--hHHHHHHHhh-cCCCCccc
Q psy3698 24 SNKIFIGGVPWDTPEYLL------LTVFSQFGPVKVEWPQGTPESPTAPKA--ISLDVI--SELVLILGQW-ATEGNLCG 92 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeL------re~FsqFG~V~~v~~~rD~~Tg~rsRG--YAFVtF--sEsAeaALq~-ssr~i~~k 92 (534)
.+=|||-+||+.+-.|+. .++|.+||.|..+.|-+.......--+ -.||+| .|+|.++|++ .+--+.+|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 345899999999987773 379999999988777664321101112 259999 4477777776 33344444
Q ss_pred cc
Q psy3698 93 RV 94 (534)
Q Consensus 93 ~V 94 (534)
.+
T Consensus 194 ~l 195 (480)
T COG5175 194 VL 195 (480)
T ss_pred eE
Confidence 43
No 166
>KOG3152|consensus
Probab=87.71 E-value=0.53 Score=48.41 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=33.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCC
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPES 62 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~T 62 (534)
.-||+++||+.++..-||++|++||+|-.+.+..+..+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s 112 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDS 112 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhH
Confidence 45999999999999999999999999988887766544
No 167
>KOG0115|consensus
Probab=85.31 E-value=0.69 Score=47.62 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=47.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW 84 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ 84 (534)
.-|+|-||..-+..+.|.+.|+.||+|...++..|.. + ++.|=++|.| .+ .+.+|+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~-k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-G-KPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-c-cccccchhhhhcchhHHHHHHH
Confidence 3599999999999999999999999998777666654 3 6778899999 66 66666665
No 168
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=85.10 E-value=3.6 Score=35.99 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=36.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe--hHHHHHHHhh
Q psy3698 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI--SELVLILGQW 84 (534)
Q Consensus 26 KVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF--sEsAeaALq~ 84 (534)
.||-=..|..+...+|.++|+.||.|.+.||-- | =|||.. .|.|..+++.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi~d---T------SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWIND---T------SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEECT---T------EEEEEECCCHHHHHHHHH
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEEcC---C------cEEEEeecHHHHHHHHHH
Confidence 577666999999999999999999999999843 2 489999 4455555554
No 169
>KOG0112|consensus
Probab=84.27 E-value=0.23 Score=58.01 Aligned_cols=62 Identities=23% Similarity=0.237 Sum_probs=52.6
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea 179 (534)
.++|||+|||+..+++.+|+..| +.+|.|..|.|.+-+.+.---+|||.|.+-..+-+|...
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af-~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e 432 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAF-DESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFE 432 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhh-hhhccccccccccCCCCcccchhhhhhhccccCcccchh
Confidence 35899999999999999999999 999999999988855555566889999998877766544
No 170
>KOG2314|consensus
Probab=83.44 E-value=2.1 Score=48.32 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=49.0
Q ss_pred CCCCCccCeEEEeCCCCCCCH------HHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh
Q psy3698 18 FSDEILSNKIFIGGVPWDTPE------YLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW 84 (534)
Q Consensus 18 ~~~p~~SrKVFVGNLP~diTE------eeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ 84 (534)
...+.+..-|+|-|+|---.. .-|.++|+++|+|....+.-+..+ ..+||.|++| +- +|+.|++.
T Consensus 52 ~~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g--gtkG~lf~E~~~~~~A~~aVK~ 124 (698)
T KOG2314|consen 52 VTAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG--GTKGYLFVEYASMRDAKKAVKS 124 (698)
T ss_pred CccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC--CeeeEEEEEecChhhHHHHHHh
Confidence 344466677999999954322 346688999999988777766664 4899999999 55 88888886
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=82.39 E-value=1.6 Score=41.43 Aligned_cols=50 Identities=16% Similarity=0.056 Sum_probs=40.5
Q ss_pred HHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHHhhcCCCCccccceecc
Q psy3698 40 LLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILGQWATEGNLCGRVEVVP 98 (534)
Q Consensus 40 eLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq~ssr~i~~k~VQVrP 98 (534)
+|.+.|++||+|.-++...+ --.|+|.| +|-+||++.+..+.++.++++.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~---------~mwVTF~dg~sALaals~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD---------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRL 103 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT---------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE
T ss_pred HHHHHHHhCCceEEEEEeCC---------eEEEEECccHHHHHHHccCCcEECCEEEEEEe
Confidence 78889999999987776664 35999944 9999999999888888888874
No 172
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=82.34 E-value=5.8 Score=32.63 Aligned_cols=52 Identities=25% Similarity=0.366 Sum_probs=40.9
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhcc----CCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQF----GPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ 83 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqF----G~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq 83 (534)
+...+|.|.||. +++.++|+.+|..| ++..+.||--. =|=|.| ++ .|.+||.
T Consensus 3 ~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---------SCNVVFKDEETAARALV 60 (62)
T ss_pred ceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---------cEEEEECCHHHHHHHHH
Confidence 345789999996 68899999999999 88899998442 267889 66 6666664
No 173
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=81.74 E-value=3.1 Score=39.66 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=47.1
Q ss_pred CCceeEecccc-----CcCCHH----HHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceeecc
Q psy3698 117 PGKTIFVGALH-----GRLTAQ----ALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVKSG 187 (534)
Q Consensus 117 ~~ktIFVGNLP-----~~~Tee----dLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk~~ 187 (534)
+..||.|.-+. ...-.+ +|.+.| ..||+|+-+++.-+ -=.|+|.+-++|.+|++...++|.+.
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~-~~~GevvLvRfv~~-------~mwVTF~dg~sALaals~dg~~v~g~ 97 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKF-AQYGEVVLVRFVGD-------TMWVTFRDGQSALAALSLDGIQVNGR 97 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHH-HCCS-ECEEEEETT-------CEEEEESSCHHHHHHHHGCCSEETTE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHH-HhCCceEEEEEeCC-------eEEEEECccHHHHHHHccCCcEECCE
Confidence 34566665554 122233 567788 78999999998773 46899999999999999999888654
Q ss_pred ceeeee
Q psy3698 188 RICKKL 193 (534)
Q Consensus 188 k~~KrV 193 (534)
.+..+.
T Consensus 98 ~l~i~L 103 (146)
T PF08952_consen 98 TLKIRL 103 (146)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 433333
No 174
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=81.30 E-value=3.4 Score=40.01 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=47.9
Q ss_pred CceeEeccccCcCCHHHHHHHhhhc-CCCe---EEEE--EecCCCCCC-ceEEEEEeCCHHHHHHHHHhcC----ceeec
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDL-FGDV---VYAG--IDTDKHKYP-IGSGRITFGSTRAYSDAIRAAF----IEVKS 186 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~-FG~V---v~V~--I~~DkTG~p-KGfGFVtF~d~EsA~kAIea~~----veIk~ 186 (534)
..+|-|.+||+.+|++++.+.+ +. ++.. .++. +.....+.+ -.-|+|.|.+.+++..-++... +.-+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i-~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQI-SPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCC-SS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred CceEEEeCCCCCCCHHHHHHHh-hhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4589999999999999999988 44 7766 4544 222223322 2458999999999777766642 22222
Q ss_pred cceeeeeeeccc
Q psy3698 187 GRICKKLQIDPY 198 (534)
Q Consensus 187 ~k~~KrVeIkPy 198 (534)
....-.|+..||
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 233347888888
No 175
>KOG4307|consensus
Probab=81.12 E-value=2.7 Score=48.57 Aligned_cols=71 Identities=10% Similarity=0.053 Sum_probs=53.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
+-|-+.|+|++++-+||.++|..|-.+-...+++-...| .+.|=+.|-| +. +|.+|... .++.|..+.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G-~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l 941 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDG-VPTGECMVAFESQEEARRASMDLDGQKIRNRVVSL 941 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCC-CcccceeEeecCHHHHHhhhhccccCcccceeEEE
Confidence 467899999999999999999999888665555544546 8899999999 44 66666654 556666555443
No 176
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=76.77 E-value=10 Score=31.26 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=41.5
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcC---CCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLF---GDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~F---G~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea 179 (534)
.+|+|.||. .++-++++.+| ..| .....+.+.-|. .+=|.|.+.+.|.+||.+
T Consensus 6 eavhirGvd-~lsT~dI~~y~-~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYF-SEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVA 61 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHH-HHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHc
Confidence 468999984 57778899999 555 245677777665 477999999999999975
No 177
>KOG2193|consensus
Probab=73.07 E-value=3.5 Score=45.26 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=42.9
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.++|+|||...++..+|..+|.+. .+.... .=.-.||+||...+..-+.+||+...
T Consensus 2 nklyignL~p~~~psdl~svfg~a-------k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~s 58 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA-------KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLS 58 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc-------cCCCCcceeeecceeeccCCchhhhhhhHHhhc
Confidence 368999999999999999999332 221111 11136899999999999999999876
No 178
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=71.20 E-value=1.5 Score=32.10 Aligned_cols=34 Identities=26% Similarity=0.615 Sum_probs=28.7
Q ss_pred cccccccCCCCccccCCCCcccccccccccccccCC
Q psy3698 201 DNVCSECQTHSGPYFCREGICYRYFCRSCWLKVHIG 236 (534)
Q Consensus 201 Dq~CdeC~~~~g~YfC~~~~C~~YyC~sCw~~~H~~ 236 (534)
...|..|..+...||| ..|...+|..|....|.+
T Consensus 3 ~~~C~~H~~~~~~~~C--~~C~~~~C~~C~~~~H~~ 36 (42)
T PF00643_consen 3 EPKCPEHPEEPLSLFC--EDCNEPLCSECTVSGHKG 36 (42)
T ss_dssp SSB-SSTTTSBEEEEE--TTTTEEEEHHHHHTSTTT
T ss_pred CccCccCCccceEEEe--cCCCCccCccCCCCCCCC
Confidence 4578999988899999 569999999999999875
No 179
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=69.59 E-value=14 Score=35.56 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=46.5
Q ss_pred CCCCceeEeccccCcCC-HHHHHHH---hhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 115 LEPGKTIFVGALHGRLT-AQALYNV---MNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~T-eedLrei---F~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+-.||.|.=|..++. .+||+.+ + +.||.|..|..-- |-.|.|+|.+..+|-+|+.+-.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~L-s~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~ 146 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRL-SVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQ 146 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHH-HhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhc
Confidence 34568899988877774 3667654 5 6799999987543 6789999999999999998743
No 180
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=68.70 E-value=18 Score=31.90 Aligned_cols=61 Identities=10% Similarity=0.130 Sum_probs=34.8
Q ss_pred eEEEeCCCCCCCHHH----HHHHhhccC-CeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceec
Q psy3698 26 KIFIGGVPWDTPEYL----LLTVFSQFG-PVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVV 97 (534)
Q Consensus 26 KVFVGNLP~diTEee----Lre~FsqFG-~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVr 97 (534)
-|+|.|||-+.+... |++++..+| .|..+ +.|-|.|.| +. .|++|++ +.+..+-+..+.++
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 489999999999866 556777887 45443 125799999 55 6777766 35555555555554
No 181
>KOG2202|consensus
Probab=67.37 E-value=2.2 Score=43.91 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=37.6
Q ss_pred HHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 133 QALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 133 edLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
++|...|+++||+|+.+.|-.+---.-+|-.+|.|..+++|++|++..+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~ln 131 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLN 131 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHc
Confidence 5566667569999999865443333458999999999999999998754
No 182
>KOG2202|consensus
Probab=67.12 E-value=2.8 Score=43.20 Aligned_cols=54 Identities=7% Similarity=-0.158 Sum_probs=36.5
Q ss_pred HHHHHhh-ccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 40 LLLTVFS-QFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 40 eLre~Fs-qFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
+|...|+ +||+|....|-.+.. ..-+|=+||.| .| +|++|++. +++-+.+++|+
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~--~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ 141 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLG--DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIH 141 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccc--hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcce
Confidence 3334445 899998876655432 25679999999 77 88888876 55666655554
No 183
>KOG3152|consensus
Probab=66.97 E-value=5.1 Score=41.49 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=47.4
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-C--------CCCce----EEEEEeCCHHHHHHHHHhcC
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-H--------KYPIG----SGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-T--------G~pKG----fGFVtF~d~EsA~kAIea~~ 181 (534)
.-.||++++|+.+.-.-|+++| ..||.|-.|.+.... + |..++ -|-|+|.+...|.+..+..+
T Consensus 74 ~GVvylS~IPp~m~~~rlReil-~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln 149 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREIL-SQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN 149 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHH-HhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC
Confidence 3569999999999999999999 899999998875543 2 11221 14688888887777666655
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=66.06 E-value=21 Score=31.34 Aligned_cols=54 Identities=13% Similarity=0.245 Sum_probs=39.2
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhc
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAA 180 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~ 180 (534)
..||-=..|..+...||.++| +.||.|.---| -| ..|||...+++.+..|+...
T Consensus 9 dHVFhltFPkeWK~~DI~qlF-spfG~I~VsWi-~d------TSAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLF-SPFGQIYVSWI-ND------TSAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHC-CCCCCEEEEEE-CT------TEEEEEECCCHHHHHHHHHH
T ss_pred ceEEEEeCchHhhhhhHHHHh-ccCCcEEEEEE-cC------CcEEEEeecHHHHHHHHHHh
Confidence 446655699999999999999 99999764434 32 47999999999998887664
No 185
>KOG1996|consensus
Probab=64.44 E-value=17 Score=38.63 Aligned_cols=53 Identities=9% Similarity=-0.114 Sum_probs=38.2
Q ss_pred HHHHHHhhhcCCCeEEEEEecCCCC-CC-ceEEEEEeCCHHHHHHHHHhcCceeec
Q psy3698 133 QALYNVMNDLFGDVVYAGIDTDKHK-YP-IGSGRITFGSTRAYSDAIRAAFIEVKS 186 (534)
Q Consensus 133 edLreiF~s~FG~Vv~V~I~~DkTG-~p-KGfGFVtF~d~EsA~kAIea~~veIk~ 186 (534)
+++++-+ ++||.|..|.|..++.. .. ----||.|+..++|.+|+-..+.....
T Consensus 301 de~keEc-eKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG 355 (378)
T KOG1996|consen 301 DETKEEC-EKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG 355 (378)
T ss_pred HHHHHHH-HhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec
Confidence 4567788 89999999998776521 11 123599999999999998776544433
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=62.57 E-value=8.2 Score=37.41 Aligned_cols=64 Identities=14% Similarity=0.002 Sum_probs=33.7
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhc-cCCe---eEEe-ecCCCCCCCCCCcEEEEEe-h-HHHHHHHhh
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQ-FGPV---KVEW-PQGTPESPTAPKAISLDVI-S-ELVLILGQW 84 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~Fsq-FG~V---~~v~-~~rD~~Tg~rsRGYAFVtF-s-EsAeaALq~ 84 (534)
+....||.|+.||+.+||+++.+..+. ++.. .... ...+.......-.-|||.| + +++....+.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~ 74 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDR 74 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHH
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHh
Confidence 344579999999999999999998777 6665 2221 0111111111224699999 4 355555543
No 187
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=60.79 E-value=12 Score=32.81 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=33.2
Q ss_pred EEEEeCCHHHHHHHHHhcCceeeccceeeeeeecccccc
Q psy3698 163 GRITFGSTRAYSDAIRAAFIEVKSGRICKKLQIDPYLED 201 (534)
Q Consensus 163 GFVtF~d~EsA~kAIea~~veIk~~k~~KrVeIkPyLeD 201 (534)
|.|||.+.+-|++.|++....+...+..-+|++.||...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~ 39 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLG 39 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecC
Confidence 689999999999999998877777776778999999544
No 188
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=60.06 E-value=3.9 Score=35.80 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=41.1
Q ss_pred EEEEe-hH-HHHHHHhhcCCCCcc----ccceecccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHh
Q psy3698 70 SLDVI-SE-LVLILGQWATEGNLC----GRVEVVPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVM 139 (534)
Q Consensus 70 AFVtF-sE-sAeaALq~ssr~i~~----k~VQVrPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF 139 (534)
|.|+| .+ -|+++++.....+.. -.+++.|.......... -......++|-|.|||..+.+++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q---v~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ---VFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE---EEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999 56 889999873322221 22444554332211000 0001246889999999999999999987
No 189
>KOG2068|consensus
Probab=57.02 E-value=9.6 Score=40.66 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=48.9
Q ss_pred CCceeEeccccCcCCHHHHH---HHhhhcCCCeEEEEEecCCC--C--CCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 117 PGKTIFVGALHGRLTAQALY---NVMNDLFGDVVYAGIDTDKH--K--YPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLr---eiF~s~FG~Vv~V~I~~DkT--G--~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.+.-+||-+|+..+..+.+. +.| .+||.|..+.+-.+.. . .+--.++|+|...++|+.||+...
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyf-gqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~ 146 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYF-GQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVD 146 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccc-cccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhh
Confidence 34668999999888666554 578 8899999998888762 1 112247999999999999998865
No 190
>KOG2253|consensus
Probab=55.65 E-value=14 Score=42.70 Aligned_cols=108 Identities=6% Similarity=-0.091 Sum_probs=64.1
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe--hH-HHHHHHhhcCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI--SE-LVLILGQWATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF--sE-sAeaALq~ssr~i~~k~VQV 96 (534)
.....-+||||||...+..+-++.+...+|-|..+...+ |||..| .+ ++++........+.++...+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 334456899999999999999999999999987654332 899999 33 44444433333333322221
Q ss_pred cc----------cccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHh
Q psy3698 97 VP----------WAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVM 139 (534)
Q Consensus 97 rP----------w~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF 139 (534)
.+ |.... +... ....+....+-.+|+++|....+......|
T Consensus 106 ~~d~q~~~n~~k~~~~~-~~~~-~~f~p~~srr~e~i~~k~~~l~~~~~~~~~ 156 (668)
T KOG2253|consen 106 NVDEQTIENADKEKSIA-NKES-HKFVPSSSRRQESIQNKPLSLDEQIHKKSL 156 (668)
T ss_pred cchhhhhcCccccccch-hhhh-cccCCchhHHHHHhhccccchhHHHHHHHH
Confidence 11 11001 0000 111122225678888988887776666555
No 191
>KOG2416|consensus
Probab=54.06 E-value=7.1 Score=44.55 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=51.3
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
......|+|.||=...|.-+|++++....|.|+..-|+. -|--.||.|.+.+.|.+-+.+++
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk-----IKShCyV~yss~eEA~atr~Alh 502 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK-----IKSHCYVSYSSVEEAAATREALH 502 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH-----hhcceeEecccHHHHHHHHHHHh
Confidence 345688999999999999999999965777887774444 45578999999999998888876
No 192
>KOG2253|consensus
Probab=48.64 E-value=11 Score=43.35 Aligned_cols=59 Identities=22% Similarity=0.143 Sum_probs=50.6
Q ss_pred CCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 114 KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 114 ~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
...+..+|||||+...+..+-++.++ ...|.|....++. |||..|..+....+|+....
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il-~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t 94 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSIL-AKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLT 94 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHH-hhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhc
Confidence 34567899999999999999999999 8899888776554 99999999999999987643
No 193
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=48.32 E-value=41 Score=30.43 Aligned_cols=127 Identities=13% Similarity=-0.026 Sum_probs=71.8
Q ss_pred CeEEEeCCC--CCCCHHHHHHHhh----ccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcccccee
Q psy3698 25 NKIFIGGVP--WDTPEYLLLTVFS----QFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEV 96 (534)
Q Consensus 25 rKVFVGNLP--~diTEeeLre~Fs----qFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQV 96 (534)
+...||.+- ..++-..|.+.+. ..|.+....+ ..|+..+.| ++ +++++++...-.+.+..+.+
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l---------~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l 86 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL---------GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLIL 86 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe---------CCCeEEEEEEeccceeEEEecccccccccchhh
Confidence 345666663 2345555555544 4454443322 236888888 66 88888887655666666677
Q ss_pred cccccCCCCCCCCCCCCCCCCCceeEeccccCcC-CHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEE
Q psy3698 97 VPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRL-TAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRIT 166 (534)
Q Consensus 97 rPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~-TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVt 166 (534)
.+|......... .. ....-=|-|-|||... +++-|+++. +.+|.++.+...+.. .....|++|.
T Consensus 87 ~~W~~~~~~~~~---~~-~~~~vWVri~glP~~~~~~~~~~~i~-~~iG~~i~vD~~t~~-~~~~~~~Rv~ 151 (153)
T PF14111_consen 87 QRWSPDFNPSEV---KF-EHIPVWVRIYGLPLHLWSEEILKAIG-SKIGEPIEVDENTLK-RTRLDFARVR 151 (153)
T ss_pred hhhccccccccc---ce-eccchhhhhccCCHHHhhhHHHHHHH-HhcCCeEEEEcCCCC-cccccEEEEE
Confidence 777632110000 00 0011224467999885 666777877 999999887544422 1223466663
No 194
>KOG2068|consensus
Probab=45.44 E-value=15 Score=39.19 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=44.6
Q ss_pred CCccCeEEEeCCCCCCCHHHHH---HHhhccCCeeEEeecCCCCCCCCCC--cEEEEEe-hH-HHHHHHhh
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLL---TVFSQFGPVKVEWPQGTPESPTAPK--AISLDVI-SE-LVLILGQW 84 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLr---e~FsqFG~V~~v~~~rD~~Tg~rsR--GYAFVtF-sE-sAeaALq~ 84 (534)
++..+.+||-+|+.+...+.+- +.|.+||.|..+.+-++......+- -=++|+| .| +|..+|+.
T Consensus 74 vVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~ 144 (327)
T KOG2068|consen 74 VVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDD 144 (327)
T ss_pred hhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHH
Confidence 3555789999999887655544 5899999999888877662110111 1289999 55 88888875
No 195
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=42.30 E-value=48 Score=32.03 Aligned_cols=64 Identities=11% Similarity=0.026 Sum_probs=43.3
Q ss_pred CeEEEeCCCCCCCH-HH---HHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEehH--HHHHHHhhcCCCCcccccee
Q psy3698 25 NKIFIGGVPWDTPE-YL---LLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISE--LVLILGQWATEGNLCGRVEV 96 (534)
Q Consensus 25 rKVFVGNLP~diTE-ee---Lre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE--sAeaALq~ssr~i~~k~VQV 96 (534)
.+|.|.=|..++.. ++ +....+.||+|..+.+.-. --|.|+|.| +|-+|+.+-.....+..+|.
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr--------qsavVvF~d~~SAC~Av~Af~s~~pgtm~qC 156 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR--------QSAVVVFKDITSACKAVSAFQSRAPGTMFQC 156 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC--------ceEEEEehhhHHHHHHHHhhcCCCCCceEEe
Confidence 46888777776632 34 4455788999998876542 258999966 88888887444445555554
No 196
>KOG4676|consensus
Probab=42.18 E-value=35 Score=37.57 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=55.6
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecC--C--CCCCceEEEEEeCCHHHHHHHHHhcC-ceeeccceeeee
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTD--K--HKYPIGSGRITFGSTRAYSDAIRAAF-IEVKSGRICKKL 193 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~D--k--TG~pKGfGFVtF~d~EsA~kAIea~~-veIk~~k~~KrV 193 (534)
..|-|.||...+|.++++.+| .-.|+|..+.+.-. . -....-.+||.|.|...+..|---.+ |.|... +
T Consensus 8 ~vIqvanispsat~dqm~tlF-g~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdra-----l 81 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLF-GNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRA-----L 81 (479)
T ss_pred ceeeecccCchhhHHHHHHHH-hhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeee-----E
Confidence 368899999999999999999 88999998886542 2 22335689999999999877743222 334322 2
Q ss_pred eecccccccc
Q psy3698 194 QIDPYLEDNV 203 (534)
Q Consensus 194 eIkPyLeDq~ 203 (534)
-+.||++..+
T Consensus 82 iv~p~~~~~~ 91 (479)
T KOG4676|consen 82 IVRPYGDEVI 91 (479)
T ss_pred EEEecCCCCC
Confidence 3456654443
No 197
>KOG1996|consensus
Probab=39.97 E-value=51 Score=35.11 Aligned_cols=57 Identities=12% Similarity=-0.050 Sum_probs=39.8
Q ss_pred HHHHHHHhhccCCeeEEeecCCCCCCCCCC-cEEEEEe--hH-HHHHHHhhcCCCCccccce
Q psy3698 38 EYLLLTVFSQFGPVKVEWPQGTPESPTAPK-AISLDVI--SE-LVLILGQWATEGNLCGRVE 95 (534)
Q Consensus 38 EeeLre~FsqFG~V~~v~~~rD~~Tg~rsR-GYAFVtF--sE-sAeaALq~ssr~i~~k~VQ 95 (534)
|+++++-.++||.|..|.|..+..-. ..+ -=.||+| .+ +.++++.++++...++.|.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p-~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQP-EDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCc-cchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 56788899999999877766554322 122 2479999 55 7777777788877776554
No 198
>KOG2591|consensus
Probab=37.91 E-value=53 Score=37.66 Aligned_cols=64 Identities=9% Similarity=-0.084 Sum_probs=44.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhc--cCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHH---hhcCCCCccccce
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQ--FGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILG---QWATEGNLCGRVE 95 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~Fsq--FG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaAL---q~ssr~i~~k~VQ 95 (534)
.|-|.+.-||..+-+|+++.+|+. +-++.+|....+.. -||+| +| +|+.|. ++..+++.+|+|-
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n--------WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN--------WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc--------eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 355778999999999999999975 66777776554322 69999 77 666554 4444555555543
No 199
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=36.87 E-value=99 Score=26.87 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=42.2
Q ss_pred eEeccccCcCCHHHHHHHhhhcCC-CeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 121 IFVGALHGRLTAQALYNVMNDLFG-DVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 121 IFVGNLP~~~TeedLreiF~s~FG-~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea 179 (534)
.|+--++...+..++++.++..|| .|..|....-+.++ --|+|++...+.|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~--KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE--KKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--EEEEEEeCCCCcHHHHHHh
Confidence 455567889999999999988898 67788766644322 3489999888877766443
No 200
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=35.96 E-value=23 Score=32.23 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=28.7
Q ss_pred EEEeCCCCCC---------CHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH--HHHHHHh
Q psy3698 27 IFIGGVPWDT---------PEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE--LVLILGQ 83 (534)
Q Consensus 27 VFVGNLP~di---------TEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE--sAeaALq 83 (534)
+.|-|+|... +.++|++.|+.|..+.+. +..+.. .++|++.|.| ++ ..+.|+.
T Consensus 11 gIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~-~l~~~~---gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 11 GIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVK-PLYGKQ---GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEE----EE-TTS-EE---SHHHHHHHHH---SEEE-EEEETT---EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeE-ECcCCC---CCcEEEEEEECCChHHHHHHHH
Confidence 4555665433 458899999999998654 444333 4689999999 54 4444443
No 201
>KOG0119|consensus
Probab=35.38 E-value=25 Score=39.53 Aligned_cols=76 Identities=24% Similarity=0.359 Sum_probs=52.5
Q ss_pred EEEEEeCCHHHHHHHHHhcC------ceeeccce-eeeeeec------ccc--cc-ccccccCCC-CccccCCCC-cccc
Q psy3698 162 SGRITFGSTRAYSDAIRAAF------IEVKSGRI-CKKLQID------PYL--ED-NVCSECQTH-SGPYFCREG-ICYR 223 (534)
Q Consensus 162 fGFVtF~d~EsA~kAIea~~------veIk~~k~-~KrVeIk------PyL--eD-q~CdeC~~~-~g~YfC~~~-~C~~ 223 (534)
++.|+=++.|..++||+..- |.+..... .|+.|+. +-+ +| +.|..|+.. |..|-|.++ .-.+
T Consensus 206 H~~Isadt~eki~~Ai~vienli~~av~~~e~~n~l~~~Qlrela~lNgt~r~~d~~~c~~cg~~~H~q~~cp~r~~~~~ 285 (554)
T KOG0119|consen 206 HCLISADTQEKIKKAIAVIENLIQSAVSVPEGQNDLKRLQLRELARLNGTLRDDDNRACRNCGSTGHKQYDCPGRIPNTT 285 (554)
T ss_pred eEEEecchHHHHHHHHHHHHHHHHhhccCccccccccHHHHHHHHHhCCCCCccccccccccCCCccccccCCccccccc
Confidence 67899999999999987643 22322211 2344432 333 34 689999964 899999998 3344
Q ss_pred cccccccccccCCC
Q psy3698 224 YFCRSCWLKVHIGE 237 (534)
Q Consensus 224 YyC~sCw~~~H~~~ 237 (534)
--|.-||.-.|...
T Consensus 286 n~c~~cg~~gH~~~ 299 (554)
T KOG0119|consen 286 NVCKICGPLGHISI 299 (554)
T ss_pred ccccccCCcccccc
Confidence 47999999999875
No 202
>KOG2416|consensus
Probab=35.28 E-value=29 Score=39.91 Aligned_cols=56 Identities=16% Similarity=-0.034 Sum_probs=42.0
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhh-ccCCeeEEeecCCCCCCCCCCcEEEEEe-hH----HHHHHHhh
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFS-QFGPVKVEWPQGTPESPTAPKAISLDVI-SE----LVLILGQW 84 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~Fs-qFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE----sAeaALq~ 84 (534)
..++-|+|.||=.-.|.-+|+++.. ..|.|...||-+- |--|||.| ++ ++..||..
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-------KShCyV~yss~eEA~atr~Alhn 503 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-------KSHCYVSYSSVEEAAATREALHN 503 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-------hcceeEecccHHHHHHHHHHHhc
Confidence 3567799999999999999999999 5666777777543 33689999 44 44555543
No 203
>KOG4285|consensus
Probab=34.93 E-value=52 Score=35.12 Aligned_cols=58 Identities=14% Similarity=-0.073 Sum_probs=41.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcc
Q psy3698 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLC 91 (534)
Q Consensus 26 KVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~ 91 (534)
=|=|-|.|..-+ .-|...|++||+|+...... +| -+-+|.| .. .+++||....+.|.+
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~---ng----NwMhirYssr~~A~KALskng~ii~g 258 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS---NG----NWMHIRYSSRTHAQKALSKNGTIIDG 258 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecCC---CC----ceEEEEecchhHHHHhhhhcCeeecc
Confidence 355667776654 45678899999998765442 22 4899999 66 999999986665553
No 204
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=34.66 E-value=1.1e+02 Score=26.06 Aligned_cols=57 Identities=9% Similarity=0.046 Sum_probs=41.4
Q ss_pred eeEeccccCcCCHHHHHHHhhhcCC-CeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHH
Q psy3698 120 TIFVGALHGRLTAQALYNVMNDLFG-DVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIR 178 (534)
Q Consensus 120 tIFVGNLP~~~TeedLreiF~s~FG-~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIe 178 (534)
.-|+-.++...|..++++.++..|| .|..|....-+.++ --|+|++...+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~--KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE--KKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--eEEEEEECCCCcHHHHHH
Confidence 3556678899999999999988898 67777765544322 248999988777665533
No 205
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=34.40 E-value=21 Score=29.84 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=13.2
Q ss_pred cceeeeEEcCCCCCCch
Q psy3698 489 ILSNKIFIGGVPWDTPE 505 (534)
Q Consensus 489 ~~s~kvf~gg~p~d~~e 505 (534)
..|+-|||||+|=..-+
T Consensus 25 ~tSr~vflG~IP~~W~~ 41 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQ 41 (67)
T ss_pred HcCceEEECCCChHHHH
Confidence 56889999999965443
No 206
>PF14893 PNMA: PNMA
Probab=33.80 E-value=27 Score=37.42 Aligned_cols=58 Identities=24% Similarity=0.211 Sum_probs=37.4
Q ss_pred ccccCCCCCCCCCCCCCccCeEEEeCCCCCCCHHHHHHHh----hccCCeeEEeecCCCCCCCCCCcEEEEEehH
Q psy3698 6 KTWEGVLPLRTQFSDEILSNKIFIGGVPWDTPEYLLLTVF----SQFGPVKVEWPQGTPESPTAPKAISLDVISE 76 (534)
Q Consensus 6 ~tWsG~lPPR~~~~~p~~SrKVFVGNLP~diTEeeLre~F----sqFG~V~~v~~~rD~~Tg~rsRGYAFVtFsE 76 (534)
|.|-|--+.|. |.|.|||.+++|++|.+.. ...|.-.+.--+-.+..+ .--|+|+|.|
T Consensus 10 Cr~m~~~~~r~----------lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~---~~aalve~~e 71 (331)
T PF14893_consen 10 CRGMGVDPQRA----------LLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN---AKAALVEFAE 71 (331)
T ss_pred HHhcCcChhhh----------heeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc---cceeeeeccc
Confidence 66777766666 9999999999999988765 456765543322111111 1257777755
No 207
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=32.83 E-value=22 Score=25.00 Aligned_cols=31 Identities=29% Similarity=0.587 Sum_probs=25.2
Q ss_pred cccccCCCCccccCCCCcccccccccccccccC
Q psy3698 203 VCSECQTHSGPYFCREGICYRYFCRSCWLKVHI 235 (534)
Q Consensus 203 ~CdeC~~~~g~YfC~~~~C~~YyC~sCw~~~H~ 235 (534)
+|.++..+...+||. .|....|..|-...|.
T Consensus 2 ~C~~H~~~~~~~fC~--~~~~~iC~~C~~~~H~ 32 (39)
T cd00021 2 LCDEHGEEPLSLFCE--TDRALLCVDCDLSVHS 32 (39)
T ss_pred CCCccCCcceEEEeC--ccChhhhhhcChhhcC
Confidence 577887778899995 4888999999877776
No 208
>COG4907 Predicted membrane protein [Function unknown]
Probab=32.74 E-value=35 Score=38.31 Aligned_cols=8 Identities=38% Similarity=0.837 Sum_probs=3.5
Q ss_pred ccccccCC
Q psy3698 352 DYFSYNNA 359 (534)
Q Consensus 352 ~~~~~~~~ 359 (534)
||+-|--|
T Consensus 514 ~ylVYatA 521 (595)
T COG4907 514 QYLVYATA 521 (595)
T ss_pred hhhhhhhh
Confidence 34444433
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=30.79 E-value=1.1e+02 Score=25.47 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=34.5
Q ss_pred cCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 129 RLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 129 ~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.++-++++..+ ..|+- .+|..|++|+ ||.|.+.++|.++.....
T Consensus 11 ~~~v~d~K~~L-r~y~~---~~I~~d~tGf-----YIvF~~~~Ea~rC~~~~~ 54 (66)
T PF11767_consen 11 GVTVEDFKKRL-RKYRW---DRIRDDRTGF-----YIVFNDSKEAERCFRAED 54 (66)
T ss_pred CccHHHHHHHH-hcCCc---ceEEecCCEE-----EEEECChHHHHHHHHhcC
Confidence 46788999999 88874 3455666654 899999999999988754
No 210
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=29.40 E-value=2.5e+02 Score=21.54 Aligned_cols=56 Identities=16% Similarity=0.120 Sum_probs=42.5
Q ss_pred eeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCH----HHHHHHHHhcC
Q psy3698 120 TIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGST----RAYSDAIRAAF 181 (534)
Q Consensus 120 tIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~----EsA~kAIea~~ 181 (534)
|+.|.||.-.--+..+.+.+ ...-.|..+.++. ..+-.-|.|... +...++|++..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l-~~~~GV~~v~vd~-----~~~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKAL-SKLPGVKSVKVDL-----ETKTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHH-HTSTTEEEEEEET-----TTTEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHHH-hcCCCCcEEEEEC-----CCCEEEEEEecCCCCHHHHHHHHHHhC
Confidence 46677777777778899999 7788899999888 456788888754 67777777643
No 211
>KOG2891|consensus
Probab=28.74 E-value=49 Score=35.03 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=26.1
Q ss_pred cCeEEEeCCCCCC------------CHHHHHHHhhccCCeeEEe-ecCC
Q psy3698 24 SNKIFIGGVPWDT------------PEYLLLTVFSQFGPVKVEW-PQGT 59 (534)
Q Consensus 24 SrKVFVGNLP~di------------TEeeLre~FsqFG~V~~v~-~~rD 59 (534)
.-+|++.+||-.+ +|+-|+..|+.||+|..+. ++.|
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicd 197 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICD 197 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccc
Confidence 3567777777543 6788999999999997654 3444
No 212
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=28.69 E-value=21 Score=38.88 Aligned_cols=33 Identities=21% Similarity=0.592 Sum_probs=22.3
Q ss_pred cccccCCCCccccCCCCcccccccccccccccCC
Q psy3698 203 VCSECQTHSGPYFCREGICYRYFCRSCWLKVHIG 236 (534)
Q Consensus 203 ~CdeC~~~~g~YfC~~~~C~~YyC~sCw~~~H~~ 236 (534)
.|..|+..+-.+|-. +.|--|||++|--...-.
T Consensus 41 ~C~RC~~~~~~~~~~-lp~~~~YCr~Cl~mgRv~ 73 (441)
T COG4098 41 RCNRCGNTHIELFAK-LPCGCLYCRNCLMMGRVR 73 (441)
T ss_pred EehhcCCcchhhhcc-cccceEeehhhhhccccc
Confidence 799999655444432 344469999998766554
No 213
>KOG2591|consensus
Probab=28.48 E-value=1.2e+02 Score=34.92 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=43.3
Q ss_pred CceeEeccccCcCCHHHHHHHhhh-cCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhc
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMND-LFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAA 180 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s-~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~ 180 (534)
++-|.+.-||..+-.|+++.+|+. ..-+++.|.+..+. + =||+|++..+|++|-+..
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----n-WyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----N-WYITFESDTDAQQAYKYL 232 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----c-eEEEeecchhHHHHHHHH
Confidence 345677999999999999999932 25677777765532 2 389999999999886553
No 214
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=28.22 E-value=53 Score=27.25 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.0
Q ss_pred HHHHHHhhccCCeeEEeec
Q psy3698 39 YLLLTVFSQFGPVKVEWPQ 57 (534)
Q Consensus 39 eeLre~FsqFG~V~~v~~~ 57 (534)
++||++|++.|+|.++.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999876654
No 215
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=27.79 E-value=20 Score=34.07 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=14.6
Q ss_pred cCCCCCCchHHHHHhhc
Q psy3698 497 GGVPWDTPEYLLLTVFS 513 (534)
Q Consensus 497 gg~p~d~~e~~l~~~f~ 513 (534)
+|+||+++|..|.+.+.
T Consensus 134 ~g~~W~~~E~li~k~l~ 150 (152)
T cd03331 134 KSFNWYGTERLIRKYLA 150 (152)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 48899999999988764
No 216
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=27.14 E-value=3.7e+02 Score=24.37 Aligned_cols=60 Identities=10% Similarity=-0.086 Sum_probs=42.9
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea 179 (534)
..+-+...|..++.++|..+....-..|..++|.+|... .+=-+.+.|.+.++|+.--+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~ 73 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEE 73 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHH
Confidence 445567777778888888777333456677888887642 455788999999998777655
No 217
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=24.71 E-value=68 Score=33.75 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=44.6
Q ss_pred ccccccCCCCccccCCCCcccccccccccccccCCCCCCCCceecCCCCCCCCCCCCCCCCCeeeecccCC
Q psy3698 202 NVCSECQTHSGPYFCREGICYRYFCRSCWLKVHIGEYSQHDPIVRNVRKSPPSSPSGPHSGGLTLNTLNGF 272 (534)
Q Consensus 202 q~CdeC~~~~g~YfC~~~~C~~YyC~sCw~~~H~~~~~~HkPl~r~~~~~~~~~~~gp~~~~~~~~~~~~~ 272 (534)
+-|-.|+..--+.- ....+.|++|.+..-..-.+.-.=+++.+.. --++-++.|+.+|+ .+|-||
T Consensus 112 RFCg~CG~~~~~~~----~g~~~~C~~cg~~~fPR~dP~vIv~v~~~~~-ilLa~~~~h~~g~y-S~LAGF 176 (279)
T COG2816 112 RFCGRCGTKTYPRE----GGWARVCPKCGHEHFPRIDPCVIVAVIRGDE-ILLARHPRHFPGMY-SLLAGF 176 (279)
T ss_pred cCCCCCCCcCcccc----CceeeeCCCCCCccCCCCCCeEEEEEecCCc-eeecCCCCCCCcce-eeeeec
Confidence 46888986532222 2355679999887766544444445555555 57788888999999 999999
No 218
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=24.70 E-value=36 Score=32.15 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=16.6
Q ss_pred EcCCCCCCchHHHHHhhcc
Q psy3698 496 IGGVPWDTPEYLLLTVFSQ 514 (534)
Q Consensus 496 ~gg~p~d~~e~~l~~~f~~ 514 (534)
|||+||+..|.-|.+.++.
T Consensus 125 lgGl~W~~V~~ii~~~~~~ 143 (154)
T PHA02595 125 IAGGDWDKIEAIIDEATPD 143 (154)
T ss_pred CCCCCHHHHHHHHHHhcCC
Confidence 6899999999999998653
No 219
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=23.48 E-value=1.6e+02 Score=27.70 Aligned_cols=39 Identities=33% Similarity=0.489 Sum_probs=27.5
Q ss_pred ccCcCCHHHHHHHhhhcCCCeEEEEEecCC---CCCCceEEEEEe
Q psy3698 126 LHGRLTAQALYNVMNDLFGDVVYAGIDTDK---HKYPIGSGRITF 167 (534)
Q Consensus 126 LP~~~TeedLreiF~s~FG~Vv~V~I~~Dk---TG~pKGfGFVtF 167 (534)
-|..+|-.+|+++|.+. .++-.|.++. .|.|-|.=++.|
T Consensus 82 ~PYTlT~~e~r~iF~Ep---m~YQGITReQV~rdGLP~GsYRiCF 123 (145)
T TIGR02542 82 PPYTLTYNELRQIFREP---MVYQGITREQVQRDGLPEGSYRICF 123 (145)
T ss_pred CceeeeHHHHHHHHhhh---hhhccccHHHHhhcCCCCCceEEEE
Confidence 57899999999999554 4555565554 677777655554
No 220
>KOG4285|consensus
Probab=22.65 E-value=1.6e+02 Score=31.54 Aligned_cols=69 Identities=13% Similarity=0.093 Sum_probs=46.9
Q ss_pred eEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceeeccceeeeeeecccc
Q psy3698 121 IFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVKSGRICKKLQIDPYL 199 (534)
Q Consensus 121 IFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk~~k~~KrVeIkPyL 199 (534)
|-|-+.|..-.. .|...| +++|+|++..-.. .-.+=+|.|.++-+|.|||.+...-|... .-|-|+|..
T Consensus 200 VTVfGFppg~~s-~vL~~F-~~cG~Vvkhv~~~-----ngNwMhirYssr~~A~KALskng~ii~g~---vmiGVkpCt 268 (350)
T KOG4285|consen 200 VTVFGFPPGQVS-IVLNLF-SRCGEVVKHVTPS-----NGNWMHIRYSSRTHAQKALSKNGTIIDGD---VMIGVKPCT 268 (350)
T ss_pred EEEeccCccchh-HHHHHH-HhhCeeeeeecCC-----CCceEEEEecchhHHHHhhhhcCeeeccc---eEEeeeecC
Confidence 334477766544 456778 8999998865432 33588999999999999998876444422 234556654
No 221
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=21.45 E-value=50 Score=26.36 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=24.8
Q ss_pred ccccccCCCCccccCCCCccccccccccccc
Q psy3698 202 NVCSECQTHSGPYFCREGICYRYFCRSCWLK 232 (534)
Q Consensus 202 q~CdeC~~~~g~YfC~~~~C~~YyC~sCw~~ 232 (534)
-+|..|....|-+.-.+..=.+|.|..|..+
T Consensus 23 LIC~~C~~hNGla~~~~~~~i~y~C~~Cg~~ 53 (54)
T PF10058_consen 23 LICSKCFSHNGLAPKEEFEEIQYRCPYCGAL 53 (54)
T ss_pred EECcccchhhcccccccCCceEEEcCCCCCc
Confidence 3799999887777766777789999999753
No 222
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.68 E-value=87 Score=32.23 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=27.6
Q ss_pred EEEEeCCHHHHHHHHHhcCceeeccceeeeeeecccccccccccc
Q psy3698 163 GRITFGSTRAYSDAIRAAFIEVKSGRICKKLQIDPYLEDNVCSEC 207 (534)
Q Consensus 163 GFVtF~d~EsA~kAIea~~veIk~~k~~KrVeIkPyLeDq~CdeC 207 (534)
|||+|++.++|..|++.... .....-+++..|-.+|-..+.-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~---~~~~~~~v~~APeP~DI~W~NL 42 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS---KRPNSWRVSPAPEPDDIIWENL 42 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc---CCCCCceEeeCCCccccccccc
Confidence 79999999999999984321 1111226777776677655433
No 223
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.64 E-value=78 Score=25.41 Aligned_cols=39 Identities=13% Similarity=0.422 Sum_probs=27.8
Q ss_pred eeeeccccccccccccCCCCccccCCCCccccccccccccccc
Q psy3698 192 KLQIDPYLEDNVCSECQTHSGPYFCREGICYRYFCRSCWLKVH 234 (534)
Q Consensus 192 rVeIkPyLeDq~CdeC~~~~g~YfC~~~~C~~YyC~sCw~~~H 234 (534)
-++|+|+.--|.|..|+..... .+.-..+.|+.|....|
T Consensus 19 v~~v~~~~TSq~C~~CG~~~~~----~~~~r~~~C~~Cg~~~~ 57 (69)
T PF07282_consen 19 VVEVDEAYTSQTCPRCGHRNKK----RRSGRVFTCPNCGFEMD 57 (69)
T ss_pred EEEECCCCCccCccCccccccc----ccccceEEcCCCCCEEC
Confidence 3668888766899999965433 34556678988887755
Done!