Query psy3698
Match_columns 534
No_of_seqs 325 out of 1609
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 23:17:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 1.8E-29 6E-34 231.5 17.9 170 19-198 8-180 (196)
2 2cjk_A Nuclear polyadenylated 100.0 6.2E-29 2.1E-33 222.4 12.5 150 23-185 2-154 (167)
3 4f02_A Polyadenylate-binding p 100.0 1.3E-28 4.5E-33 233.3 14.7 160 24-198 15-178 (213)
4 3nmr_A Cugbp ELAV-like family 100.0 5.1E-28 1.7E-32 217.0 16.8 149 23-181 2-157 (175)
5 1fxl_A Paraneoplastic encephal 100.0 1.2E-27 4.2E-32 212.5 17.9 146 24-181 2-151 (167)
6 3md3_A Nuclear and cytoplasmic 100.0 1.4E-27 4.8E-32 211.9 17.8 146 25-181 1-150 (166)
7 1b7f_A Protein (SXL-lethal pro 100.0 1.4E-27 4.7E-32 213.4 17.7 146 24-181 3-152 (168)
8 2qfj_A FBP-interacting repress 100.0 4.3E-27 1.5E-31 218.7 20.7 162 22-185 26-193 (216)
9 2ghp_A U4/U6 snRNA-associated 99.9 4.5E-27 1.5E-31 230.3 18.7 142 19-181 36-180 (292)
10 3smz_A Protein raver-1, ribonu 99.9 2.2E-25 7.4E-30 217.6 21.5 134 23-181 21-158 (284)
11 2yh0_A Splicing factor U2AF 65 99.9 2.1E-26 7.2E-31 211.3 10.6 154 23-184 3-181 (198)
12 3sde_A Paraspeckle component 1 99.9 1.8E-25 6.2E-30 218.2 17.7 168 5-198 5-176 (261)
13 1fje_B Nucleolin RBD12, protei 99.9 4.8E-26 1.6E-30 206.0 11.3 148 19-181 8-157 (175)
14 2g4b_A Splicing factor U2AF 65 99.9 3E-25 1E-29 199.3 16.1 145 23-185 3-162 (172)
15 3tyt_A Heterogeneous nuclear r 99.9 2.1E-24 7.3E-29 205.8 17.7 158 23-188 3-194 (205)
16 3smz_A Protein raver-1, ribonu 99.9 2.2E-24 7.4E-29 210.5 16.5 149 24-181 95-247 (284)
17 3pgw_A U1-A; protein-RNA compl 99.9 2.7E-23 9.2E-28 202.6 19.3 150 22-181 7-265 (282)
18 2ghp_A U4/U6 snRNA-associated 99.9 2E-23 6.7E-28 204.5 16.4 152 23-181 116-274 (292)
19 2adc_A Polypyrimidine tract-bi 99.9 7.6E-23 2.6E-27 195.7 19.2 150 21-181 31-210 (229)
20 1qm9_A Polypyrimidine tract-bi 99.9 5.2E-23 1.8E-27 190.3 16.5 147 24-181 3-179 (198)
21 4f25_A Polyadenylate-binding p 99.7 1.6E-18 5.6E-23 150.3 7.0 106 24-134 5-113 (115)
22 2kn4_A Immunoglobulin G-bindin 99.7 6.6E-17 2.3E-21 145.7 12.3 124 54-185 3-138 (158)
23 2dnl_A Cytoplasmic polyadenyla 99.7 3.7E-16 1.3E-20 135.0 10.3 86 21-108 5-107 (114)
24 1l3k_A Heterogeneous nuclear r 99.6 1.3E-15 4.4E-20 139.3 13.7 69 116-185 11-80 (196)
25 3nmr_A Cugbp ELAV-like family 99.6 1.2E-15 4.2E-20 136.4 12.9 63 118-181 3-68 (175)
26 2hvz_A Splicing factor, argini 99.6 2.3E-15 7.9E-20 126.3 9.6 97 25-127 1-100 (101)
27 1b7f_A Protein (SXL-lethal pro 99.6 5.3E-15 1.8E-19 131.7 12.3 64 117-181 2-66 (168)
28 1s79_A Lupus LA protein; RRM, 99.6 4.9E-15 1.7E-19 127.3 10.1 78 18-97 5-84 (103)
29 1fxl_A Paraneoplastic encephal 99.6 2.8E-14 9.7E-19 126.3 14.2 63 118-181 2-65 (167)
30 2rs2_A Musashi-1, RNA-binding 99.6 3.5E-15 1.2E-19 128.3 8.1 88 8-97 10-99 (109)
31 3md3_A Nuclear and cytoplasmic 99.6 2.8E-14 9.7E-19 126.1 14.0 62 119-181 1-62 (166)
32 4fxv_A ELAV-like protein 1; RN 99.6 3.8E-15 1.3E-19 126.6 7.8 75 22-97 17-94 (99)
33 2dgs_A DAZ-associated protein 99.6 1.5E-14 5.2E-19 120.8 11.3 78 20-98 6-85 (99)
34 2lxi_A RNA-binding protein 10; 99.6 2.1E-15 7.2E-20 126.0 5.8 73 24-97 1-78 (91)
35 3s7r_A Heterogeneous nuclear r 99.6 4E-15 1.4E-19 121.3 7.4 78 19-97 6-85 (87)
36 2mss_A Protein (musashi1); RNA 99.6 9.5E-15 3.3E-19 116.0 8.4 71 26-97 1-73 (75)
37 1x5u_A Splicing factor 3B subu 99.5 3.7E-14 1.3E-18 119.4 11.6 78 19-97 10-90 (105)
38 3s8s_A Histone-lysine N-methyl 99.5 1.1E-14 3.7E-19 126.3 8.2 73 24-97 6-81 (110)
39 4fxv_A ELAV-like protein 1; RN 99.5 2.2E-14 7.6E-19 121.8 9.7 67 118-185 19-87 (99)
40 1x4b_A Heterogeneous nuclear r 99.5 1.5E-14 5.1E-19 124.4 8.7 79 19-98 22-102 (116)
41 1wg5_A Heterogeneous nuclear r 99.5 3.7E-14 1.3E-18 120.5 10.7 78 19-98 10-90 (104)
42 1whw_A Hypothetical protein ri 99.5 5.6E-14 1.9E-18 117.1 11.6 78 20-98 4-84 (99)
43 2dgp_A Bruno-like 4, RNA bindi 99.5 4.6E-14 1.6E-18 119.0 10.9 78 19-97 8-91 (106)
44 1iqt_A AUF1, heterogeneous nuc 99.5 1.2E-14 3.9E-19 115.3 6.7 71 26-97 1-73 (75)
45 3s8s_A Histone-lysine N-methyl 99.5 3.8E-14 1.3E-18 122.9 10.3 69 116-185 4-74 (110)
46 2fy1_A RNA-binding motif prote 99.5 6.1E-14 2.1E-18 122.0 11.6 76 21-98 4-82 (116)
47 1uaw_A Mouse-musashi-1; RNP-ty 99.5 1.4E-14 4.8E-19 115.1 6.9 72 25-97 1-74 (77)
48 2dnz_A Probable RNA-binding pr 99.5 4.9E-14 1.7E-18 116.4 10.4 74 23-97 4-80 (95)
49 2cph_A RNA binding motif prote 99.5 7.1E-14 2.4E-18 117.8 11.5 78 19-97 10-92 (107)
50 3s7r_A Heterogeneous nuclear r 99.5 4E-14 1.4E-18 115.4 9.6 70 115-185 8-78 (87)
51 3pgw_A U1-A; protein-RNA compl 99.5 7.6E-13 2.6E-17 128.7 20.1 64 115-181 6-73 (282)
52 2la6_A RNA-binding protein FUS 99.5 5.2E-14 1.8E-18 117.8 9.9 78 19-97 8-96 (99)
53 3ucg_A Polyadenylate-binding p 99.5 3.1E-14 1.1E-18 116.0 8.3 75 23-98 5-81 (89)
54 2qfj_A FBP-interacting repress 99.5 7.7E-14 2.6E-18 129.3 11.9 64 117-181 27-91 (216)
55 2div_A TRNA selenocysteine ass 99.5 5.4E-14 1.8E-18 117.2 9.7 81 115-196 6-89 (99)
56 2cq4_A RNA binding motif prote 99.5 3E-14 1E-18 122.1 8.2 77 20-97 21-99 (114)
57 3lqv_A PRE-mRNA branch site pr 99.5 2.6E-14 8.9E-19 122.5 7.7 100 23-145 7-109 (115)
58 2cqd_A RNA-binding region cont 99.5 7.8E-14 2.7E-18 119.9 10.8 78 19-97 12-91 (116)
59 2dnm_A SRP46 splicing factor; 99.5 5.1E-14 1.8E-18 118.4 9.4 77 20-97 9-88 (103)
60 3p5t_L Cleavage and polyadenyl 99.5 1.8E-14 6.2E-19 119.0 6.5 73 25-98 2-79 (90)
61 2g4b_A Splicing factor U2AF 65 99.5 9.2E-14 3.1E-18 124.4 11.6 62 117-184 3-75 (172)
62 2dh8_A DAZ-associated protein 99.5 2.5E-14 8.7E-19 120.7 7.2 79 19-98 11-91 (105)
63 2do4_A Squamous cell carcinoma 99.5 7.2E-14 2.4E-18 116.9 9.9 78 18-97 11-91 (100)
64 1x5s_A Cold-inducible RNA-bind 99.5 8.4E-14 2.9E-18 116.7 10.3 78 20-98 8-88 (102)
65 2cqc_A Arginine/serine-rich sp 99.5 4.6E-14 1.6E-18 116.3 8.5 79 18-97 9-90 (95)
66 2cpy_A RNA-binding protein 12; 99.5 2.5E-14 8.6E-19 123.5 7.2 77 19-97 10-89 (114)
67 2lxi_A RNA-binding protein 10; 99.5 1.8E-14 6.2E-19 120.3 6.1 62 119-181 2-65 (91)
68 2lkz_A RNA-binding protein 5; 99.5 2.3E-14 8E-19 121.8 6.7 77 20-97 5-90 (95)
69 1wez_A HnRNP H', FTP-3, hetero 99.5 3.5E-14 1.2E-18 121.3 7.8 77 19-98 10-88 (102)
70 1x4h_A RNA-binding protein 28; 99.5 1.3E-13 4.6E-18 116.9 11.3 78 19-97 10-96 (111)
71 2jrs_A RNA-binding protein 39; 99.5 6.3E-14 2.2E-18 120.4 9.3 89 8-97 9-101 (108)
72 2dnl_A Cytoplasmic polyadenyla 99.5 4.2E-14 1.4E-18 122.1 8.0 82 116-199 6-99 (114)
73 3ns6_A Eukaryotic translation 99.5 2.2E-14 7.5E-19 121.3 6.1 76 21-97 3-88 (100)
74 1x4e_A RNA binding motif, sing 99.5 3.8E-14 1.3E-18 115.0 7.2 74 23-97 4-80 (85)
75 1s79_A Lupus LA protein; RRM, 99.5 7.2E-14 2.5E-18 120.0 9.3 71 117-188 10-80 (103)
76 2d9p_A Polyadenylate-binding p 99.5 8.8E-14 3E-18 117.0 9.6 77 18-97 9-88 (103)
77 3mdf_A Peptidyl-prolyl CIS-tra 99.5 5.2E-14 1.8E-18 113.8 7.9 75 22-97 5-82 (85)
78 2cq0_A Eukaryotic translation 99.5 5.1E-14 1.7E-18 118.4 8.1 78 19-97 10-90 (103)
79 2e5h_A Zinc finger CCHC-type a 99.5 7.4E-14 2.5E-18 115.1 8.9 76 21-97 13-91 (94)
80 3bs9_A Nucleolysin TIA-1 isofo 99.5 4.6E-14 1.6E-18 114.6 7.5 74 23-97 5-81 (87)
81 1p27_B RNA-binding protein 8A; 99.5 7.4E-14 2.5E-18 117.8 9.0 76 21-97 20-98 (106)
82 1x5t_A Splicing factor 3B subu 99.5 1E-13 3.4E-18 114.8 9.6 74 23-97 4-81 (96)
83 2lmi_A GRSF-1, G-rich sequence 99.5 5.5E-14 1.9E-18 120.1 8.2 77 19-97 6-87 (107)
84 2x1f_A MRNA 3'-END-processing 99.5 7.2E-14 2.5E-18 116.3 8.7 73 24-97 2-77 (96)
85 1u6f_A Tcubp1, RNA-binding pro 99.5 4.7E-14 1.6E-18 124.7 7.9 85 12-97 30-117 (139)
86 2dgs_A DAZ-associated protein 99.5 2E-13 6.9E-18 114.0 11.3 69 116-185 8-77 (99)
87 2cqg_A TDP-43, TAR DNA-binding 99.5 8.3E-14 2.8E-18 117.1 9.0 77 19-97 10-88 (103)
88 2cpe_A RNA-binding protein EWS 99.5 7.7E-14 2.6E-18 119.2 8.9 78 19-97 10-98 (113)
89 2dnh_A Bruno-like 5, RNA bindi 99.5 1.5E-13 5E-18 115.7 10.4 77 19-97 10-92 (105)
90 2dgo_A Cytotoxic granule-assoc 99.5 9E-14 3.1E-18 119.1 9.2 79 18-97 9-90 (115)
91 2j76_E EIF-4B, EIF4B, eukaryot 99.5 4.9E-14 1.7E-18 118.8 7.3 77 19-97 14-93 (100)
92 2khc_A Testis-specific RNP-typ 99.5 1.4E-13 4.7E-18 118.5 10.2 78 19-97 35-115 (118)
93 2i2y_A Fusion protein consists 99.5 8.8E-14 3E-18 124.9 9.3 115 65-185 11-136 (150)
94 1wi8_A EIF-4B, eukaryotic tran 99.5 1.4E-13 4.8E-18 116.2 9.9 75 22-98 13-90 (104)
95 3md1_A Nuclear and cytoplasmic 99.5 8.1E-14 2.8E-18 112.2 8.0 72 25-97 2-76 (83)
96 2cpz_A CUG triplet repeat RNA- 99.5 9.3E-14 3.2E-18 119.2 8.8 78 19-97 20-100 (115)
97 3ex7_B RNA-binding protein 8A; 99.5 1.3E-13 4.4E-18 119.9 9.8 77 20-97 18-97 (126)
98 1wel_A RNA-binding protein 12; 99.5 5E-14 1.7E-18 123.1 7.2 78 19-97 20-99 (124)
99 2div_A TRNA selenocysteine ass 99.5 7.3E-14 2.5E-18 116.4 7.8 72 21-93 6-81 (99)
100 2cqb_A Peptidyl-prolyl CIS-tra 99.5 7E-14 2.4E-18 117.2 7.6 77 20-97 8-87 (102)
101 2dnh_A Bruno-like 5, RNA bindi 99.5 1.8E-13 6.1E-18 115.2 10.1 65 116-181 13-77 (105)
102 1whw_A Hypothetical protein ri 99.5 3.3E-13 1.1E-17 112.4 11.3 69 116-185 6-76 (99)
103 2dh8_A DAZ-associated protein 99.5 1.7E-13 5.9E-18 115.5 9.7 79 115-198 13-92 (105)
104 2dhg_A TRNA selenocysteine ass 99.5 1.9E-13 6.4E-18 114.9 9.8 76 20-97 5-85 (104)
105 3bs9_A Nucleolysin TIA-1 isofo 99.5 2.1E-13 7.2E-18 110.6 9.7 69 116-185 4-74 (87)
106 3p5t_L Cleavage and polyadenyl 99.5 5.3E-14 1.8E-18 116.2 6.2 66 119-185 2-71 (90)
107 2dng_A Eukaryotic translation 99.5 1.7E-13 5.9E-18 115.4 9.5 75 21-97 12-88 (103)
108 2m2b_A RNA-binding protein 10; 99.5 3.4E-13 1.2E-17 119.0 11.4 78 19-97 18-103 (131)
109 2kxn_B Transformer-2 protein h 99.5 2.3E-13 7.9E-18 120.9 10.4 78 19-97 41-121 (129)
110 1fje_B Nucleolin RBD12, protei 99.5 7.1E-14 2.4E-18 126.0 7.2 69 115-185 10-79 (175)
111 2db1_A Heterogeneous nuclear r 99.5 6.3E-14 2.1E-18 122.2 6.6 77 19-97 12-93 (118)
112 1oo0_B CG8781-PA, drosophila Y 99.5 1.5E-13 5.3E-18 116.8 8.9 77 20-97 22-101 (110)
113 2hgm_A HNRPF protein, heteroge 99.5 1.7E-13 5.8E-18 122.8 9.6 77 19-98 37-117 (126)
114 2rs2_A Musashi-1, RNA-binding 99.5 1.6E-13 5.4E-18 118.0 8.9 69 116-185 23-92 (109)
115 2cqd_A RNA-binding region cont 99.5 2.5E-13 8.6E-18 116.7 10.2 71 114-185 13-84 (116)
116 2dgp_A Bruno-like 4, RNA bindi 99.5 1.2E-13 4E-18 116.5 7.9 66 115-181 10-76 (106)
117 2krb_A Eukaryotic translation 99.5 1.8E-13 6.1E-18 110.8 8.5 69 24-95 1-79 (81)
118 2cqc_A Arginine/serine-rich sp 99.4 3.3E-13 1.1E-17 111.2 10.2 71 114-185 11-83 (95)
119 1fj7_A Nucleolin RBD1, protein 99.4 5.3E-14 1.8E-18 117.9 5.5 77 19-97 12-90 (101)
120 2cq0_A Eukaryotic translation 99.4 2.9E-13 1E-17 113.8 10.1 71 114-185 11-83 (103)
121 1x4h_A RNA-binding protein 28; 99.4 2.8E-13 9.5E-18 114.9 10.0 66 115-181 12-78 (111)
122 2ywk_A Putative RNA-binding pr 99.4 1.2E-13 4.1E-18 114.1 7.4 76 20-97 12-90 (95)
123 1x5u_A Splicing factor 3B subu 99.4 3.3E-13 1.1E-17 113.6 10.1 70 115-185 12-83 (105)
124 4f25_A Polyadenylate-binding p 99.4 1.8E-13 6.1E-18 118.5 8.6 66 118-185 5-71 (115)
125 4a8x_A RNA-binding protein wit 99.4 1.1E-13 3.7E-18 112.4 6.8 75 23-97 3-80 (88)
126 3n9u_C Cleavage and polyadenyl 99.4 1E-13 3.6E-18 127.4 7.5 74 23-97 54-132 (156)
127 1uaw_A Mouse-musashi-1; RNP-ty 99.4 7.4E-14 2.5E-18 110.9 5.6 67 119-186 1-68 (77)
128 2cpf_A RNA binding motif prote 99.4 1.1E-13 3.6E-18 115.2 6.8 75 23-98 4-84 (98)
129 2lkz_A RNA-binding protein 5; 99.4 3.7E-14 1.3E-18 120.6 4.1 64 117-181 8-74 (95)
130 2cqp_A RNA-binding protein 12; 99.4 8E-14 2.7E-18 116.0 6.0 77 20-97 11-90 (98)
131 1x4e_A RNA binding motif, sing 99.4 1.9E-13 6.5E-18 110.9 8.1 65 116-181 3-68 (85)
132 2dnz_A Probable RNA-binding pr 99.4 4.5E-13 1.5E-17 110.6 10.4 69 116-185 3-73 (95)
133 2e5h_A Zinc finger CCHC-type a 99.4 4.5E-13 1.5E-17 110.4 10.4 70 115-185 13-84 (94)
134 2x1f_A MRNA 3'-END-processing 99.4 3.1E-13 1.1E-17 112.4 9.5 68 117-185 1-70 (96)
135 3md1_A Nuclear and cytoplasmic 99.4 4.1E-13 1.4E-17 108.0 9.9 66 119-185 2-69 (83)
136 3mdf_A Peptidyl-prolyl CIS-tra 99.4 2.4E-13 8.2E-18 109.9 8.4 69 116-185 5-75 (85)
137 2cph_A RNA binding motif prote 99.4 4E-13 1.4E-17 113.2 10.1 70 115-185 12-85 (107)
138 2dhg_A TRNA selenocysteine ass 99.4 3.6E-13 1.2E-17 113.2 9.7 65 116-181 7-72 (104)
139 2cq3_A RNA-binding protein 9; 99.4 6.3E-13 2.2E-17 111.7 11.2 77 18-97 9-88 (103)
140 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 3.8E-13 1.3E-17 118.0 10.2 78 19-97 58-138 (140)
141 2do4_A Squamous cell carcinoma 99.4 5.4E-13 1.9E-17 111.5 10.6 69 116-185 15-84 (100)
142 2err_A Ataxin-2-binding protei 99.4 1.5E-13 5.2E-18 117.9 7.4 78 17-97 22-102 (109)
143 1p1t_A Cleavage stimulation fa 99.4 8.7E-14 3E-18 116.7 5.7 75 22-97 6-83 (104)
144 2jwn_A Embryonic polyadenylate 99.4 1.5E-13 5E-18 119.3 7.3 75 22-97 34-110 (124)
145 1iqt_A AUF1, heterogeneous nuc 99.4 6.4E-14 2.2E-18 111.0 4.6 66 120-186 1-67 (75)
146 2dnm_A SRP46 splicing factor; 99.4 2.4E-13 8.3E-18 114.3 8.4 71 114-185 9-81 (103)
147 1wg5_A Heterogeneous nuclear r 99.4 2.6E-13 8.9E-18 115.3 8.6 69 116-185 13-82 (104)
148 2dgo_A Cytotoxic granule-assoc 99.4 6.1E-13 2.1E-17 113.9 10.9 70 115-185 12-83 (115)
149 2cpy_A RNA-binding protein 12; 99.4 1.6E-13 5.5E-18 118.4 7.4 79 115-198 12-91 (114)
150 2ywk_A Putative RNA-binding pr 99.4 3.5E-13 1.2E-17 111.2 9.1 70 115-185 13-83 (95)
151 2cqg_A TDP-43, TAR DNA-binding 99.4 5.2E-13 1.8E-17 112.2 10.2 64 115-179 12-76 (103)
152 3ulh_A THO complex subunit 4; 99.4 5.5E-13 1.9E-17 112.6 10.3 71 114-185 25-96 (107)
153 2ek1_A RNA-binding protein 12; 99.4 7.3E-14 2.5E-18 115.4 4.7 73 24-97 15-90 (95)
154 2dnn_A RNA-binding protein 12; 99.4 1.5E-13 5E-18 119.7 6.8 73 22-97 14-88 (109)
155 2hgl_A HNRPF protein, heteroge 99.4 9.6E-14 3.3E-18 125.5 5.8 76 20-97 40-120 (136)
156 2xs2_A Deleted in azoospermia- 99.4 7.9E-14 2.7E-18 117.1 4.8 74 21-97 6-81 (102)
157 3ns6_A Eukaryotic translation 99.4 1.2E-13 4.2E-18 116.7 6.0 67 118-185 6-80 (100)
158 2cqb_A Peptidyl-prolyl CIS-tra 99.4 2.7E-13 9.4E-18 113.5 8.0 70 115-185 9-80 (102)
159 1p27_B RNA-binding protein 8A; 99.4 6.2E-13 2.1E-17 112.1 10.3 70 115-185 20-91 (106)
160 3ucg_A Polyadenylate-binding p 99.4 3.6E-13 1.2E-17 109.7 8.5 67 118-185 6-73 (89)
161 2dis_A Unnamed protein product 99.4 4.5E-13 1.5E-17 113.5 9.3 74 23-97 7-87 (109)
162 2do0_A HnRNP M, heterogeneous 99.4 8E-13 2.7E-17 112.8 10.8 70 115-185 12-82 (114)
163 2la6_A RNA-binding protein FUS 99.4 6.7E-13 2.3E-17 111.0 10.1 70 115-185 10-89 (99)
164 1x5s_A Cold-inducible RNA-bind 99.4 4.8E-13 1.6E-17 112.1 9.1 66 115-181 9-75 (102)
165 2dgw_A Probable RNA-binding pr 99.4 2.9E-13 1E-17 111.3 7.7 76 20-98 6-83 (91)
166 2cqi_A Nucleolysin TIAR; RNA r 99.4 5.3E-13 1.8E-17 112.2 9.4 76 19-97 10-88 (103)
167 2kt5_A RNA and export factor-b 99.4 7.5E-13 2.6E-17 115.2 10.6 77 19-97 30-109 (124)
168 2dgv_A HnRNP M, heterogeneous 99.4 6.2E-13 2.1E-17 109.2 9.5 73 22-97 6-81 (92)
169 2dng_A Eukaryotic translation 99.4 6.8E-13 2.3E-17 111.7 10.0 70 114-185 11-81 (103)
170 3pgw_S U1-70K; protein-RNA com 99.4 1E-13 3.5E-18 146.8 6.0 70 115-185 99-170 (437)
171 2mss_A Protein (musashi1); RNA 99.4 1.8E-13 6.2E-18 108.5 6.0 65 120-185 1-66 (75)
172 3ulh_A THO complex subunit 4; 99.4 3.2E-13 1.1E-17 114.1 7.9 76 20-97 25-103 (107)
173 2d9p_A Polyadenylate-binding p 99.4 7.5E-13 2.6E-17 111.3 10.1 69 115-185 12-81 (103)
174 2cpz_A CUG triplet repeat RNA- 99.4 4.7E-13 1.6E-17 114.8 8.9 69 116-185 23-93 (115)
175 2hgn_A Heterogeneous nuclear r 99.4 2.3E-13 7.7E-18 123.7 7.2 76 20-98 42-119 (139)
176 3sde_A Paraspeckle component 1 99.4 1.3E-12 4.5E-17 127.2 13.2 62 114-181 18-79 (261)
177 2do0_A HnRNP M, heterogeneous 99.4 4.1E-13 1.4E-17 114.6 8.4 77 19-97 10-89 (114)
178 1wez_A HnRNP H', FTP-3, hetero 99.4 4E-13 1.4E-17 114.7 8.0 68 116-185 13-80 (102)
179 2ki2_A SS-DNA binding protein 99.4 1.7E-13 5.7E-18 112.4 5.5 72 25-97 2-75 (90)
180 2nlw_A Eukaryotic translation 99.4 6.9E-13 2.4E-17 112.9 9.5 76 19-97 10-95 (105)
181 2dha_A FLJ20171 protein; RRM d 99.4 1.5E-13 5E-18 122.4 5.5 74 22-97 21-100 (123)
182 2kn4_A Immunoglobulin G-bindin 99.4 7.5E-13 2.6E-17 119.1 10.2 78 19-97 65-145 (158)
183 1x4b_A Heterogeneous nuclear r 99.4 4.1E-13 1.4E-17 115.4 8.0 78 116-198 25-103 (116)
184 2khc_A Testis-specific RNP-typ 99.4 6.1E-13 2.1E-17 114.4 9.0 70 115-185 37-108 (118)
185 1x5o_A RNA binding motif, sing 99.4 1.3E-12 4.3E-17 111.8 10.9 65 116-181 23-87 (114)
186 1wi8_A EIF-4B, eukaryotic tran 99.4 8.5E-13 2.9E-17 111.3 9.7 69 115-185 12-82 (104)
187 2fy1_A RNA-binding motif prote 99.4 7.7E-13 2.6E-17 115.0 9.7 69 116-185 5-74 (116)
188 1x5o_A RNA binding motif, sing 99.4 7.2E-13 2.5E-17 113.3 9.2 70 19-90 20-92 (114)
189 2dnn_A RNA-binding protein 12; 99.4 5.3E-13 1.8E-17 116.2 8.4 76 117-198 15-90 (109)
190 1x5t_A Splicing factor 3B subu 99.4 4.8E-13 1.7E-17 110.6 7.8 68 117-185 4-74 (96)
191 2dgv_A HnRNP M, heterogeneous 99.4 1.3E-12 4.5E-17 107.2 10.3 68 116-185 6-74 (92)
192 1h2v_Z 20 kDa nuclear CAP bind 99.4 5.2E-13 1.8E-17 120.6 8.6 78 19-97 34-114 (156)
193 3n9u_C Cleavage and polyadenyl 99.4 7.5E-13 2.6E-17 121.6 9.7 68 117-185 54-125 (156)
194 1oo0_B CG8781-PA, drosophila Y 99.4 1.1E-12 3.7E-17 111.5 9.7 70 115-185 23-94 (110)
195 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.2E-12 4.2E-17 114.8 10.4 67 114-181 59-126 (140)
196 2cqp_A RNA-binding protein 12; 99.4 4E-13 1.4E-17 111.7 6.9 69 116-185 13-83 (98)
197 2lea_A Serine/arginine-rich sp 99.4 2.4E-13 8.1E-18 121.6 5.9 68 113-181 42-110 (135)
198 4f02_A Polyadenylate-binding p 99.4 7.7E-13 2.6E-17 125.0 9.7 70 114-184 11-81 (213)
199 3q2s_C Cleavage and polyadenyl 99.4 4.1E-13 1.4E-17 130.4 8.0 74 23-97 67-145 (229)
200 1sjq_A Polypyrimidine tract-bi 99.4 5E-13 1.7E-17 116.7 7.7 72 19-97 11-87 (105)
201 1u6f_A Tcubp1, RNA-binding pro 99.4 8.5E-13 2.9E-17 116.6 9.3 70 115-185 39-110 (139)
202 2cq3_A RNA-binding protein 9; 99.4 1.9E-12 6.5E-17 108.8 11.0 69 115-185 12-81 (103)
203 2kxn_B Transformer-2 protein h 99.4 1E-12 3.5E-17 116.7 9.6 70 115-185 43-114 (129)
204 2dis_A Unnamed protein product 99.4 8.5E-13 2.9E-17 111.8 8.4 70 116-186 6-81 (109)
205 1x4a_A Splicing factor, argini 99.4 1.5E-12 5.2E-17 110.6 10.0 75 19-97 17-94 (109)
206 2cq4_A RNA binding motif prote 99.4 8.3E-13 2.9E-17 113.1 8.3 68 117-185 24-92 (114)
207 2krb_A Eukaryotic translation 99.4 5.6E-13 1.9E-17 107.8 6.7 61 119-181 2-68 (81)
208 2kt5_A RNA and export factor-b 99.4 2.9E-12 1E-16 111.4 11.7 71 114-185 31-102 (124)
209 2lea_A Serine/arginine-rich sp 99.4 8.2E-13 2.8E-17 118.1 8.3 76 21-97 44-122 (135)
210 2jrs_A RNA-binding protein 39; 99.4 1.5E-12 5E-17 111.9 9.6 70 115-185 23-94 (108)
211 2cpe_A RNA-binding protein EWS 99.4 9.6E-13 3.3E-17 112.4 8.3 70 115-185 12-91 (113)
212 2dgw_A Probable RNA-binding pr 99.4 1.6E-12 5.6E-17 106.9 9.4 68 116-185 8-75 (91)
213 2m2b_A RNA-binding protein 10; 99.4 3.8E-13 1.3E-17 118.8 5.9 66 115-182 20-88 (131)
214 2dha_A FLJ20171 protein; RRM d 99.4 3.8E-13 1.3E-17 119.7 5.9 68 117-185 22-93 (123)
215 3ex7_B RNA-binding protein 8A; 99.4 1.5E-12 5.2E-17 113.1 9.6 69 116-185 20-90 (126)
216 2db1_A Heterogeneous nuclear r 99.4 6.1E-13 2.1E-17 116.0 7.1 69 116-185 15-86 (118)
217 2xs2_A Deleted in azoospermia- 99.4 4.9E-13 1.7E-17 112.2 6.1 68 117-186 8-75 (102)
218 2hgm_A HNRPF protein, heteroge 99.4 7.8E-13 2.7E-17 118.5 7.5 68 116-185 40-109 (126)
219 4a8x_A RNA-binding protein wit 99.4 1.1E-12 3.6E-17 106.5 7.6 67 118-185 4-73 (88)
220 2cpf_A RNA binding motif prote 99.4 1.4E-12 4.8E-17 108.4 8.4 69 116-185 3-76 (98)
221 1h2v_Z 20 kDa nuclear CAP bind 99.4 2.4E-12 8.1E-17 116.2 10.6 70 115-185 36-107 (156)
222 2ek1_A RNA-binding protein 12; 99.4 4.6E-13 1.6E-17 110.5 5.4 69 116-185 13-83 (95)
223 3d2w_A TAR DNA-binding protein 99.4 8.7E-13 3E-17 109.8 6.9 70 21-97 8-79 (89)
224 2dgx_A KIAA0430 protein; RRM d 99.4 2.4E-12 8E-17 107.7 9.6 68 115-185 6-78 (96)
225 2cqi_A Nucleolysin TIAR; RNA r 99.4 3.4E-12 1.2E-16 107.3 10.5 69 115-185 12-81 (103)
226 2j76_E EIF-4B, EIF4B, eukaryot 99.4 7.7E-13 2.6E-17 111.4 6.6 69 115-185 16-86 (100)
227 2e5j_A Methenyltetrahydrofolat 99.4 1.9E-12 6.4E-17 108.1 8.9 73 19-97 14-89 (97)
228 1sjq_A Polypyrimidine tract-bi 99.4 1.4E-12 4.9E-17 113.8 8.4 64 116-185 14-80 (105)
229 1p1t_A Cleavage stimulation fa 99.4 1.1E-12 3.8E-17 109.9 7.4 64 117-181 7-71 (104)
230 2jvr_A Nucleolar protein 3; RN 99.4 8.3E-13 2.8E-17 115.6 6.7 72 21-97 25-100 (111)
231 1why_A Hypothetical protein ri 99.3 4.1E-12 1.4E-16 105.8 10.7 73 18-97 11-88 (97)
232 2jwn_A Embryonic polyadenylate 99.3 1.7E-12 5.9E-17 112.5 8.6 67 118-185 36-103 (124)
233 2dgx_A KIAA0430 protein; RRM d 99.3 1.4E-12 4.8E-17 109.1 7.8 71 23-97 8-85 (96)
234 2fc9_A NCL protein; structure 99.3 1.2E-12 4.2E-17 109.6 7.3 73 20-97 11-86 (101)
235 2cpi_A CCR4-NOT transcription 99.3 8.5E-13 2.9E-17 113.4 6.5 78 20-97 11-96 (111)
236 2ki2_A SS-DNA binding protein 99.3 7.2E-13 2.5E-17 108.6 5.7 61 119-181 2-63 (90)
237 2cpj_A Non-POU domain-containi 99.3 6.1E-12 2.1E-16 105.2 10.6 72 19-97 10-84 (99)
238 2hgl_A HNRPF protein, heteroge 99.3 1.3E-12 4.5E-17 118.1 6.9 69 116-185 42-113 (136)
239 2cpx_A Hypothetical protein FL 99.3 8.2E-13 2.8E-17 112.9 5.2 79 18-97 19-100 (115)
240 2jvo_A Nucleolar protein 3; nu 99.3 2.3E-12 7.7E-17 110.9 8.0 85 4-97 10-98 (108)
241 2cq1_A PTB-like protein L; RRM 99.3 3.7E-12 1.3E-16 109.4 9.3 69 22-97 13-86 (101)
242 2cjk_A Nuclear polyadenylated 99.3 1.8E-12 6.3E-17 115.4 7.6 74 23-97 86-161 (167)
243 3q2s_C Cleavage and polyadenyl 99.3 1.7E-12 6E-17 126.0 8.0 68 117-185 67-138 (229)
244 1x4c_A Splicing factor, argini 99.3 6E-12 2.1E-16 107.3 10.4 67 23-97 14-88 (108)
245 2cpi_A CCR4-NOT transcription 99.3 3.4E-12 1.2E-16 109.6 8.8 72 113-185 10-89 (111)
246 2lmi_A GRSF-1, G-rich sequence 99.3 1.1E-12 3.7E-17 112.0 5.5 69 115-184 8-79 (107)
247 2lcw_A RNA-binding protein FUS 99.0 1.4E-13 4.9E-18 118.5 0.0 77 20-97 3-90 (116)
248 2cq1_A PTB-like protein L; RRM 99.3 5.8E-12 2E-16 108.3 9.9 60 115-180 12-71 (101)
249 2err_A Ataxin-2-binding protei 99.3 3.2E-12 1.1E-16 109.6 8.1 70 114-185 25-95 (109)
250 2ad9_A Polypyrimidine tract-bi 99.3 3.4E-12 1.2E-16 113.6 8.5 70 21-97 28-102 (119)
251 1x4a_A Splicing factor, argini 99.3 6.9E-12 2.4E-16 106.6 10.0 67 116-185 20-87 (109)
252 2dnq_A RNA-binding protein 4B; 99.3 7.9E-12 2.7E-16 102.7 10.0 69 21-98 5-76 (90)
253 1rk8_A CG8781-PA, CG8781-PA pr 99.3 2.7E-12 9.3E-17 117.4 7.9 75 22-97 70-147 (165)
254 3d2w_A TAR DNA-binding protein 99.3 3.5E-12 1.2E-16 106.1 7.8 56 116-176 9-64 (89)
255 2fc9_A NCL protein; structure 99.3 5.3E-12 1.8E-16 105.7 8.7 67 115-185 12-79 (101)
256 1wf0_A TDP-43, TAR DNA-binding 99.3 1.8E-12 6.3E-17 106.1 5.7 68 23-97 4-73 (88)
257 2nlw_A Eukaryotic translation 99.3 5.1E-12 1.7E-16 107.5 8.6 68 116-185 13-87 (105)
258 2hgn_A Heterogeneous nuclear r 99.3 1E-12 3.4E-17 119.4 4.2 68 116-185 44-111 (139)
259 1x4c_A Splicing factor, argini 99.3 1.4E-11 4.9E-16 105.0 11.1 75 116-197 13-89 (108)
260 1wel_A RNA-binding protein 12; 99.3 1.1E-12 3.8E-17 114.5 4.3 69 116-185 23-92 (124)
261 1x4d_A Matrin 3; structural ge 99.3 3E-12 1E-16 110.7 6.9 69 22-97 13-87 (102)
262 2la4_A Nuclear and cytoplasmic 99.3 5E-12 1.7E-16 105.8 8.0 71 20-97 23-96 (101)
263 1x4d_A Matrin 3; structural ge 99.3 3.9E-12 1.3E-16 110.0 7.6 62 114-181 11-73 (102)
264 3r27_A HnRNP L, heterogeneous 99.3 5.9E-12 2E-16 109.1 8.7 61 115-181 18-78 (100)
265 1rk8_A CG8781-PA, CG8781-PA pr 99.3 8.8E-12 3E-16 114.1 10.2 70 115-185 69-140 (165)
266 1wex_A Hypothetical protein (r 99.3 8E-12 2.7E-16 107.8 9.4 60 115-180 12-71 (104)
267 2xnq_A Nuclear polyadenylated 99.3 6.5E-12 2.2E-16 105.7 8.6 71 18-97 16-90 (97)
268 2ad9_A Polypyrimidine tract-bi 99.3 5.3E-12 1.8E-16 112.3 8.2 61 115-181 28-88 (119)
269 1x4f_A Matrin 3; structural ge 99.3 2.4E-12 8.3E-17 113.3 6.0 60 115-180 22-82 (112)
270 2ytc_A PRE-mRNA-splicing facto 99.3 6.7E-12 2.3E-16 101.5 8.1 70 21-97 9-82 (85)
271 1wex_A Hypothetical protein (r 99.3 1.2E-11 4.1E-16 106.7 10.1 67 24-97 15-86 (104)
272 1x4g_A Nucleolysin TIAR; struc 99.3 1.1E-11 3.8E-16 105.5 9.8 70 21-97 22-94 (109)
273 2e5g_A U6 snRNA-specific termi 99.3 1.1E-11 3.6E-16 102.9 9.4 71 21-97 5-77 (94)
274 3beg_B Splicing factor, argini 99.3 4.5E-12 1.5E-16 109.8 7.3 63 23-93 15-80 (115)
275 2hzc_A Splicing factor U2AF 65 99.3 6.5E-12 2.2E-16 101.8 7.7 69 22-97 4-85 (87)
276 2fc8_A NCL protein; structure 99.3 6.2E-12 2.1E-16 105.2 7.8 75 19-97 10-87 (102)
277 2f3j_A RNA and export factor b 99.3 6.7E-12 2.3E-16 117.4 8.9 76 20-97 84-162 (177)
278 2a3j_A U1 small nuclear ribonu 99.3 1.1E-11 3.8E-16 110.7 9.7 71 23-97 28-105 (127)
279 2i2y_A Fusion protein consists 99.3 1E-11 3.5E-16 111.4 9.5 73 19-97 68-143 (150)
280 2ytc_A PRE-mRNA-splicing facto 99.3 2E-11 6.9E-16 98.7 10.2 64 116-185 10-75 (85)
281 1x4f_A Matrin 3; structural ge 99.3 1.2E-11 4.2E-16 108.9 9.4 70 21-97 22-97 (112)
282 1fjc_A Nucleolin RBD2, protein 99.3 2.1E-12 7E-17 107.0 4.2 73 19-97 11-86 (96)
283 2voo_A Lupus LA protein; RNA-b 99.3 1.1E-11 3.7E-16 117.3 9.2 68 118-186 109-176 (193)
284 1fj7_A Nucleolin RBD1, protein 99.3 1.1E-12 3.8E-17 109.8 2.1 68 116-185 15-83 (101)
285 2dnq_A RNA-binding protein 4B; 99.3 2.4E-11 8.3E-16 99.8 10.0 62 116-185 6-68 (90)
286 2jvr_A Nucleolar protein 3; RN 99.3 7.3E-12 2.5E-16 109.6 7.1 67 116-186 26-94 (111)
287 1why_A Hypothetical protein ri 99.3 1.5E-11 5.3E-16 102.3 8.7 65 115-185 14-79 (97)
288 2voo_A Lupus LA protein; RNA-b 99.2 7.1E-12 2.4E-16 118.6 7.3 73 23-97 108-182 (193)
289 2fc8_A NCL protein; structure 99.2 1.6E-11 5.4E-16 102.7 8.5 69 113-185 10-80 (102)
290 1wf0_A TDP-43, TAR DNA-binding 99.2 3.9E-12 1.3E-16 104.2 4.6 58 117-179 4-61 (88)
291 2cpd_A Apobec-1 stimulating pr 99.2 3.2E-11 1.1E-15 100.7 10.3 70 19-97 10-84 (99)
292 2f3j_A RNA and export factor b 99.2 3.3E-11 1.1E-15 112.6 11.3 70 115-185 85-155 (177)
293 3r27_A HnRNP L, heterogeneous 99.2 1.6E-11 5.5E-16 106.3 8.4 68 23-97 20-92 (100)
294 1whx_A Hypothetical protein ri 99.2 1.3E-11 4.5E-16 106.4 7.8 69 22-97 8-79 (111)
295 2kvi_A Nuclear polyadenylated 99.2 1.7E-11 5.9E-16 102.2 8.2 68 21-97 7-78 (96)
296 1nu4_A U1A RNA binding domain; 99.2 5.4E-12 1.8E-16 104.5 5.1 71 23-97 7-84 (97)
297 3beg_B Splicing factor, argini 99.2 1.2E-11 4.1E-16 107.1 7.3 65 117-188 15-80 (115)
298 1wf1_A RNA-binding protein RAL 99.2 1.3E-11 4.6E-16 105.1 7.4 69 20-97 23-95 (110)
299 2cpj_A Non-POU domain-containi 99.2 1.7E-11 5.9E-16 102.4 7.9 65 115-185 12-77 (99)
300 2cpx_A Hypothetical protein FL 99.2 3.3E-12 1.1E-16 109.1 3.4 69 116-185 23-93 (115)
301 2a3j_A U1 small nuclear ribonu 99.2 2.2E-11 7.5E-16 108.8 8.6 64 115-181 26-93 (127)
302 2j8a_A Histone-lysine N-methyl 99.2 7.3E-12 2.5E-16 114.1 5.5 73 24-97 2-91 (136)
303 2wbr_A GW182, gawky, LD47780P; 99.2 1.2E-11 4.2E-16 105.4 6.4 66 24-96 7-75 (89)
304 3lqv_A PRE-mRNA branch site pr 99.2 3E-11 1E-15 103.4 8.8 63 116-181 6-68 (115)
305 2lcw_A RNA-binding protein FUS 98.8 1.2E-12 4E-17 112.7 0.0 65 116-181 5-78 (116)
306 1x4g_A Nucleolysin TIAR; struc 99.2 3.1E-11 1.1E-15 102.7 8.8 64 116-185 23-87 (109)
307 2cqh_A IGF-II mRNA-binding pro 99.2 9.8E-12 3.3E-16 102.6 5.5 69 21-97 5-78 (93)
308 2dnp_A RNA-binding protein 14; 99.2 3.6E-11 1.2E-15 98.8 8.8 69 20-97 5-76 (90)
309 2la4_A Nuclear and cytoplasmic 99.2 2.6E-11 8.9E-16 101.5 8.0 63 117-185 26-89 (101)
310 2yh0_A Splicing factor U2AF 65 99.2 3.3E-11 1.1E-15 110.1 9.3 76 21-97 111-189 (198)
311 2hvz_A Splicing factor, argini 99.2 1.6E-11 5.5E-16 102.7 6.6 58 119-181 1-58 (101)
312 2dgu_A Heterogeneous nuclear r 99.2 2.9E-11 1E-15 101.9 8.2 67 22-97 9-78 (103)
313 3pgw_S U1-70K; protein-RNA com 99.2 2.2E-11 7.4E-16 129.0 9.2 76 21-97 99-177 (437)
314 1fjc_A Nucleolin RBD2, protein 99.2 1.7E-11 5.7E-16 101.5 6.6 66 115-185 13-79 (96)
315 2cq2_A Hypothetical protein LO 99.2 1.9E-11 6.5E-16 108.2 7.3 60 116-181 23-84 (114)
316 2wbr_A GW182, gawky, LD47780P; 99.2 2E-11 6.8E-16 104.1 7.1 58 118-181 7-64 (89)
317 3egn_A RNA-binding protein 40; 99.2 4.3E-12 1.5E-16 113.0 3.1 78 19-97 40-125 (143)
318 2xnq_A Nuclear polyadenylated 99.2 5.5E-11 1.9E-15 100.0 9.4 59 115-181 19-78 (97)
319 2dgu_A Heterogeneous nuclear r 99.2 5.2E-11 1.8E-15 100.3 9.1 63 115-185 8-71 (103)
320 1nu4_A U1A RNA binding domain; 99.2 1E-11 3.5E-16 102.8 4.6 67 116-185 6-77 (97)
321 2e5j_A Methenyltetrahydrofolat 99.2 3.3E-11 1.1E-15 100.5 7.6 65 116-185 17-82 (97)
322 1wg1_A KIAA1579 protein, homol 99.2 2.8E-11 9.6E-16 99.4 7.0 62 117-185 4-66 (88)
323 2kvi_A Nuclear polyadenylated 99.2 4.1E-11 1.4E-15 99.9 8.1 63 115-185 7-71 (96)
324 2dgt_A RNA-binding protein 30; 99.2 3.7E-11 1.3E-15 99.1 7.7 69 20-97 6-77 (92)
325 2e44_A Insulin-like growth fac 99.2 6.5E-11 2.2E-15 98.0 9.0 71 22-97 13-87 (96)
326 2e5g_A U6 snRNA-specific termi 99.2 9E-11 3.1E-15 97.3 9.5 64 116-185 6-70 (94)
327 2hzc_A Splicing factor U2AF 65 99.2 4.9E-11 1.7E-15 96.6 7.7 63 116-185 4-78 (87)
328 1wg1_A KIAA1579 protein, homol 99.2 2E-11 6.8E-16 100.3 5.3 67 23-97 4-73 (88)
329 2cpd_A Apobec-1 stimulating pr 99.2 1.3E-10 4.5E-15 97.0 10.2 63 115-185 12-77 (99)
330 1whx_A Hypothetical protein ri 99.2 4.2E-11 1.4E-15 103.2 7.3 59 117-181 9-67 (111)
331 2dgt_A RNA-binding protein 30; 99.2 1.2E-10 4.1E-15 96.0 9.7 63 115-185 7-70 (92)
332 2cqh_A IGF-II mRNA-binding pro 99.2 2.9E-11 9.8E-16 99.8 5.6 63 116-185 6-71 (93)
333 2jvo_A Nucleolar protein 3; nu 99.1 8.1E-11 2.8E-15 101.2 8.4 62 116-185 29-91 (108)
334 2dnp_A RNA-binding protein 14; 99.1 1.3E-10 4.3E-15 95.5 9.0 63 115-185 6-69 (90)
335 1wf1_A RNA-binding protein RAL 99.1 7.2E-11 2.5E-15 100.6 7.8 62 116-185 25-88 (110)
336 1x5p_A Negative elongation fac 99.1 1.3E-10 4.3E-15 97.0 8.9 70 19-97 10-82 (97)
337 2j8a_A Histone-lysine N-methyl 99.1 4.3E-11 1.5E-15 109.0 6.3 76 119-197 3-94 (136)
338 3egn_A RNA-binding protein 40; 99.1 3.2E-11 1.1E-15 107.3 5.2 69 116-185 43-118 (143)
339 1x5p_A Negative elongation fac 99.1 2.4E-10 8.1E-15 95.3 10.0 63 115-185 12-75 (97)
340 2cq2_A Hypothetical protein LO 99.1 9.6E-11 3.3E-15 103.7 6.7 58 24-88 25-87 (114)
341 2e44_A Insulin-like growth fac 99.1 2.8E-10 9.6E-15 94.1 8.6 66 116-185 13-80 (96)
342 1sjr_A Polypyrimidine tract-bi 99.1 2.3E-10 7.9E-15 107.3 8.2 72 21-97 43-119 (164)
343 3zzy_A Polypyrimidine tract-bi 99.0 8.2E-10 2.8E-14 99.8 10.1 64 117-185 27-92 (130)
344 1sjr_A Polypyrimidine tract-bi 99.0 5.4E-10 1.9E-14 104.8 9.1 61 117-181 45-105 (164)
345 2bz2_A Negative elongation fac 99.0 4.5E-10 1.6E-14 98.7 8.0 70 19-97 34-106 (121)
346 3tyt_A Heterogeneous nuclear r 99.0 4.1E-10 1.4E-14 107.2 8.2 60 117-181 3-63 (205)
347 3u1l_A PRE-mRNA-splicing facto 99.0 4.9E-10 1.7E-14 110.7 7.4 74 22-103 132-229 (240)
348 2pe8_A Splicing factor 45; RRM 99.0 8.8E-10 3E-14 95.1 8.0 74 24-97 8-89 (105)
349 2e5i_A Heterogeneous nuclear r 99.0 1.6E-09 5.4E-14 96.9 9.5 57 119-181 26-83 (124)
350 3zzy_A Polypyrimidine tract-bi 99.0 6.8E-10 2.3E-14 100.3 7.0 71 20-96 24-100 (130)
351 2adc_A Polypyrimidine tract-bi 99.0 8.1E-10 2.8E-14 105.4 7.6 62 115-181 31-93 (229)
352 2e5i_A Heterogeneous nuclear r 99.0 1.6E-09 5.5E-14 96.8 9.0 70 21-97 22-97 (124)
353 2bz2_A Negative elongation fac 99.0 1.2E-09 4.1E-14 96.0 7.7 62 116-185 37-99 (121)
354 3u1l_A PRE-mRNA-splicing facto 98.9 8.6E-10 2.9E-14 108.9 7.4 60 116-181 132-200 (240)
355 2pe8_A Splicing factor 45; RRM 98.9 2.4E-09 8.4E-14 92.3 9.1 66 116-182 6-78 (105)
356 2diu_A KIAA0430 protein; struc 98.9 3.3E-09 1.1E-13 91.6 8.8 62 25-97 10-79 (96)
357 3tht_A Alkylated DNA repair pr 98.9 1.8E-09 6.1E-14 111.8 8.2 61 115-181 15-77 (345)
358 2diu_A KIAA0430 protein; struc 98.9 3.4E-09 1.2E-13 91.5 8.5 56 116-181 6-67 (96)
359 1qm9_A Polypyrimidine tract-bi 98.9 1E-09 3.6E-14 101.0 5.2 59 118-181 3-62 (198)
360 1jmt_A Splicing factor U2AF 35 98.8 6.6E-09 2.3E-13 89.2 6.4 60 122-181 19-89 (104)
361 2dit_A HIV TAT specific factor 98.8 2E-08 7E-13 86.2 8.4 63 115-181 12-85 (112)
362 1jmt_A Splicing factor U2AF 35 98.7 2.6E-09 8.7E-14 91.8 1.8 67 29-97 20-101 (104)
363 2dit_A HIV TAT specific factor 98.7 3.4E-08 1.2E-12 84.8 8.8 75 19-98 10-98 (112)
364 3tht_A Alkylated DNA repair pr 98.7 1.5E-08 5.1E-13 104.9 7.2 55 23-84 17-75 (345)
365 3v4m_A Splicing factor U2AF 65 98.7 3.5E-08 1.2E-12 84.9 7.3 66 117-183 4-82 (105)
366 2d9o_A DNAJ (HSP40) homolog, s 98.7 5.9E-08 2E-12 83.4 8.3 48 128-180 27-74 (100)
367 2d9o_A DNAJ (HSP40) homolog, s 98.6 8.7E-08 3E-12 82.4 9.0 67 24-97 10-85 (100)
368 3v4m_A Splicing factor U2AF 65 98.6 5.6E-08 1.9E-12 83.7 7.1 74 24-97 5-92 (105)
369 3ue2_A Poly(U)-binding-splicin 98.6 6.4E-08 2.2E-12 85.5 7.4 66 117-183 19-94 (118)
370 3ue2_A Poly(U)-binding-splicin 98.5 5.4E-08 1.9E-12 85.9 4.7 74 24-98 20-105 (118)
371 1owx_A Lupus LA protein, SS-B, 98.5 5.9E-07 2E-11 80.4 9.6 70 111-186 11-85 (121)
372 1owx_A Lupus LA protein, SS-B, 98.3 1.3E-06 4.3E-11 78.2 8.5 55 23-84 17-75 (121)
373 3s6e_A RNA-binding protein 39; 98.1 5.4E-06 1.9E-10 72.7 8.1 71 22-97 5-88 (114)
374 3s6e_A RNA-binding protein 39; 98.1 2.7E-06 9.3E-11 74.6 5.8 48 132-183 31-78 (114)
375 2dnr_A Synaptojanin-1; RRM dom 97.8 4E-05 1.4E-09 65.6 7.6 62 117-186 6-75 (91)
376 3dxb_A Thioredoxin N-terminall 97.7 6.7E-05 2.3E-09 70.9 7.3 51 130-181 141-196 (222)
377 3dxb_A Thioredoxin N-terminall 97.7 6.2E-05 2.1E-09 71.2 6.8 63 35-98 140-209 (222)
378 1ufw_A Synaptojanin 2; RNP dom 97.6 4.9E-05 1.7E-09 65.5 4.2 64 116-187 13-85 (95)
379 2dnr_A Synaptojanin-1; RRM dom 97.5 0.00014 4.7E-09 62.3 6.1 64 25-97 8-81 (91)
380 1ufw_A Synaptojanin 2; RNP dom 97.1 0.00026 8.9E-09 61.0 3.7 64 25-97 16-90 (95)
381 2dhx_A Poly (ADP-ribose) polym 96.8 0.0063 2.1E-07 53.2 9.1 86 23-131 7-99 (104)
382 2dhx_A Poly (ADP-ribose) polym 96.2 0.019 6.6E-07 50.2 8.9 72 117-199 7-82 (104)
383 2l9w_A U4/U6 snRNA-associated- 95.0 0.046 1.6E-06 48.5 6.6 67 22-95 19-93 (117)
384 1whv_A Poly(A)-specific ribonu 94.8 0.092 3.1E-06 45.6 7.9 51 25-84 16-68 (100)
385 1uw4_A UPF3X; nonsense mediate 94.7 0.13 4.5E-06 43.7 8.6 79 119-198 2-87 (91)
386 3ctr_A Poly(A)-specific ribonu 93.4 0.091 3.1E-06 45.7 5.0 51 25-84 6-58 (101)
387 3pq1_A Poly(A) RNA polymerase; 92.6 0.048 1.6E-06 58.6 2.7 54 24-84 53-108 (464)
388 1whv_A Poly(A)-specific ribonu 92.4 0.32 1.1E-05 42.2 7.0 52 120-179 17-68 (100)
389 2l9w_A U4/U6 snRNA-associated- 92.2 0.3 1E-05 43.4 6.7 62 118-185 21-88 (117)
390 2l08_A Regulator of nonsense t 91.4 0.28 9.6E-06 42.3 5.6 80 118-198 9-95 (97)
391 1uw4_A UPF3X; nonsense mediate 89.8 0.73 2.5E-05 39.1 6.7 60 25-84 2-64 (91)
392 3pq1_A Poly(A) RNA polymerase; 89.7 0.14 4.9E-06 55.0 2.8 59 117-181 52-110 (464)
393 3ctr_A Poly(A)-specific ribonu 89.6 0.33 1.1E-05 42.2 4.5 52 120-179 7-58 (101)
394 1wwh_A Nucleoporin 35, nucleop 89.3 0.84 2.9E-05 40.7 6.9 64 19-90 19-84 (119)
395 1wwh_A Nucleoporin 35, nucleop 87.6 1.7 5.7E-05 38.8 7.7 73 117-199 23-95 (119)
396 3p3d_A Nucleoporin 53; structu 82.3 1.6 5.6E-05 39.5 5.2 66 25-91 8-88 (132)
397 3p3d_A Nucleoporin 53; structu 75.7 1.6 5.5E-05 39.6 3.0 75 119-199 8-97 (132)
398 2l08_A Regulator of nonsense t 75.5 4.6 0.00016 34.7 5.6 60 23-84 8-72 (97)
399 3d45_A Poly(A)-specific ribonu 67.4 13 0.00046 39.9 8.3 50 26-84 441-492 (507)
400 2d8v_A Zinc finger FYVE domain 66.8 4.5 0.00015 32.7 3.4 41 202-245 9-51 (67)
401 1wey_A Calcipressin 1; structu 60.0 10 0.00036 32.9 4.7 58 118-181 5-67 (104)
402 3d45_A Poly(A)-specific ribonu 58.4 20 0.0007 38.5 7.8 54 118-180 440-493 (507)
403 1wey_A Calcipressin 1; structu 54.2 17 0.00058 31.6 5.1 67 23-96 4-78 (104)
404 3fry_A Probable copper-exporti 35.7 1.3E+02 0.0043 22.4 7.0 60 118-184 6-65 (73)
405 2fc7_A ZZZ3 protein; structure 31.8 24 0.00084 29.0 2.4 34 201-236 21-61 (82)
406 2fg1_A Conserved hypothetical 29.8 14 0.00047 33.4 0.6 25 496-520 130-154 (158)
407 2ffw_A Midline-1; B-BOX, ring 25.6 23 0.00079 28.6 1.2 40 201-242 30-74 (78)
408 2dip_A Zinc finger SWIM domain 22.8 36 0.0012 29.0 1.9 29 202-232 32-64 (98)
409 3p0s_A Capsid protein VP; icos 22.0 43 0.0015 34.7 2.6 49 473-521 71-129 (494)
410 2jyc_A Uncharacterized protein 21.3 26 0.00088 32.0 0.7 30 488-520 126-155 (160)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=1.8e-29 Score=231.47 Aligned_cols=170 Identities=16% Similarity=0.191 Sum_probs=138.0
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcccccee
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEV 96 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQV 96 (534)
.++...++|||||||+++||++|+++|++||+|..+.+++++.++ +++|||||+| ++ +|++||+.....+.++.+.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTK-RSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCC-CccceEEEEeCCHHHHHHHHhcCCCEECCEEeee
Confidence 456678999999999999999999999999999999999998888 8999999999 65 99999988777777777777
Q ss_pred cccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHH
Q psy3698 97 VPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSD 175 (534)
Q Consensus 97 rPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~k 175 (534)
......... .......+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+
T Consensus 87 ~~~~~~~~~----~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 161 (196)
T 1l3k_A 87 KRAVSREDS----QRPGAHLTVKKIFVGGIKEDTEEHHLRDYF-EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161 (196)
T ss_dssp EECCC---------------CCSEEEEECCTTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred ecccCcccc----cccccCCCcceEEEeCCCCCCCHHHHHHHH-hcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHH
Confidence 632211110 111122345899999999999999999999 999999999999997 89999999999999999999
Q ss_pred HHHhcCceeeccceeeeeeeccc
Q psy3698 176 AIRAAFIEVKSGRICKKLQIDPY 198 (534)
Q Consensus 176 AIea~~veIk~~k~~KrVeIkPy 198 (534)
||+.....+.. ++|+|+..
T Consensus 162 A~~~~~~~~~G----~~i~v~~a 180 (196)
T 1l3k_A 162 IVIQKYHTVNG----HNCEVRKA 180 (196)
T ss_dssp HHHCSCCEETT----EECEEEEC
T ss_pred HHHhCCcEECC----EEEEEEec
Confidence 99875555543 34555543
No 2
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=6.2e-29 Score=222.36 Aligned_cols=150 Identities=21% Similarity=0.265 Sum_probs=125.9
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceecccc
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVVPWA 100 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVrPw~ 100 (534)
.+++|||||||+++||++|+++|++||+|..+.+++++.++ ++||||||+| ++ +|++|++. ...+.++.+.+....
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATG-RSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTS-SCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCC-CccceEEEEEccHHHHHHHHhc-ccccCCeEccccccc
Confidence 46899999999999999999999999999999999998888 9999999999 55 89999984 344555555544211
Q ss_pred cCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 101 ISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 101 lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea 179 (534)
......+..+|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+.
T Consensus 80 ----------~~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 148 (167)
T 2cjk_A 80 ----------PRDEQDKTGKIFVGGIGPDVRPKEFEEFF-SQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 148 (167)
T ss_dssp ----------CHHHHHHCEEEEEEEECTTCCHHHHHHHH-HTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHC
T ss_pred ----------chhhccCCCeEEECCCCCCCCHHHHHHHH-HhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhC
Confidence 11122346799999999999999999999 999999999999997 899999999999999999999984
Q ss_pred cCceee
Q psy3698 180 AFIEVK 185 (534)
Q Consensus 180 ~~veIk 185 (534)
....+.
T Consensus 149 ~~~~~~ 154 (167)
T 2cjk_A 149 KFIDFK 154 (167)
T ss_dssp SEECSS
T ss_pred CCEEeC
Confidence 334443
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=1.3e-28 Score=233.28 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=128.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceecccc
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPWA 100 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw~ 100 (534)
.++|||||||+++||++|+++|++||+|..+.+++|+.++ +++|||||+| ++ +|++||+. ....+.++.+.+.. .
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~-~ 92 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW-S 92 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE-C
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCC-CccccccceeCCHHHHHHHHHHhhhhhcCCccccccc-c
Confidence 4789999999999999999999999999999999999988 9999999999 55 88888875 44455555555431 1
Q ss_pred cCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhc
Q psy3698 101 ISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAA 180 (534)
Q Consensus 101 lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~ 180 (534)
.. ..........+|||+|||..+|+++|+++| +.||.|+.|.|+.|+.+ +||||||+|.+.++|.+||+..
T Consensus 93 ~~-------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F-~~~G~i~~~~i~~d~~~-~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 93 QR-------DPSLRKSGVGNIFIKNLDKSIDNKALYDTF-SAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp CC-------CTHHHHHCTTEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEEETTE-EEEEEEEEESSHHHHHHHHHHH
T ss_pred cc-------cccccccccccceECCcccccHHHHHHHHH-hhcCCeEEEEeeccCCC-CceEEEEEeCCHHHHHHHHHHh
Confidence 00 111112345789999999999999999999 99999999999998643 7999999999999999999986
Q ss_pred C-ceeeccceeeeeeeccc
Q psy3698 181 F-IEVKSGRICKKLQIDPY 198 (534)
Q Consensus 181 ~-veIk~~k~~KrVeIkPy 198 (534)
+ .+|. .++|.|+.+
T Consensus 164 ng~~~~----g~~i~V~~a 178 (213)
T 4f02_A 164 NGMLLN----DRKVFVGRF 178 (213)
T ss_dssp TTCEET----TEECEEEEC
T ss_pred CCCEEC----CEEEEEEEc
Confidence 5 4444 245555544
No 4
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=5.1e-28 Score=216.99 Aligned_cols=149 Identities=18% Similarity=0.209 Sum_probs=122.6
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCC-CCCCcEEEEEe-hH-HHHHHHhh-cCCCCc---cccce
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESP-TAPKAISLDVI-SE-LVLILGQW-ATEGNL---CGRVE 95 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg-~rsRGYAFVtF-sE-sAeaALq~-ssr~i~---~k~VQ 95 (534)
.+++|||||||+++||++|+++|++||+|..+.+++++.++ .++||||||+| ++ +|++|++. ....+. .+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999987653 15899999999 55 88888875 333332 23334
Q ss_pred ecccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHH
Q psy3698 96 VVPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSD 175 (534)
Q Consensus 96 VrPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~k 175 (534)
+.+.... .......++|||+|||..+|+++|+++| +.||.|..+.|..|++|.++|||||+|.+.++|.+
T Consensus 82 ~~~~~~~---------~~~~~~~~~l~v~nl~~~~t~~~l~~~F-~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~ 151 (175)
T 3nmr_A 82 MKPADSE---------KNNAVEDRKLFIGMISKKCTENDIRVMF-SSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQT 151 (175)
T ss_dssp EEECGGG---------CCSCGGGSEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHH
T ss_pred Ecccccc---------ccccCCCCeEEEcCCCCcCCHHHHHHHH-HhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHH
Confidence 3321111 1122356899999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHhcC
Q psy3698 176 AIRAAF 181 (534)
Q Consensus 176 AIea~~ 181 (534)
||+..+
T Consensus 152 A~~~l~ 157 (175)
T 3nmr_A 152 AIKAMH 157 (175)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 998876
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=1.2e-27 Score=212.51 Aligned_cols=146 Identities=12% Similarity=0.100 Sum_probs=127.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceecccc
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPWA 100 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw~ 100 (534)
+++|||+|||+++||++|+++|++||+|..+.+++++.++ +++|||||+| ++ +|++|++. .+..+.++.+++....
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~-~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-cceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 5899999999999999999999999999999999998888 8999999999 55 88888874 6677777777775211
Q ss_pred cCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 101 ISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 101 lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea 179 (534)
+........+|||+|||..+|+++|+++| +.||.|..+.|..|+ +|.++|+|||+|.+.++|.+||+.
T Consensus 81 ----------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 149 (167)
T 1fxl_A 81 ----------PSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 149 (167)
T ss_dssp ----------CCCGGGTTCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred ----------CCcccCCCCcEEECCCCCcCCHHHHHHHH-HhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Confidence 11223456889999999999999999999 999999999999998 999999999999999999999997
Q ss_pred cC
Q psy3698 180 AF 181 (534)
Q Consensus 180 ~~ 181 (534)
.+
T Consensus 150 l~ 151 (167)
T 1fxl_A 150 LN 151 (167)
T ss_dssp HT
T ss_pred hc
Confidence 65
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-27 Score=211.92 Aligned_cols=146 Identities=15% Similarity=0.089 Sum_probs=125.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceeccccc
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVVPWAI 101 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVrPw~l 101 (534)
|+|||+|||+++||++|+++|++||+|..+.+++++. + +++|||||+| ++ +|++|++ ..+..+.++.+.+.....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~-~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-N-KNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC---CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-C-CCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 6899999999999999999999999999999999875 4 7999999999 55 8888884 466777777777763211
Q ss_pred CCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhc
Q psy3698 102 SDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAA 180 (534)
Q Consensus 102 sds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~ 180 (534)
.......+..+|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|+|||+|.+.++|.+||+..
T Consensus 79 --------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 149 (166)
T 3md3_A 79 --------SQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 149 (166)
T ss_dssp --------CCCCCCTTCEEEEEESCCTTCCHHHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred --------CCCCCCCCCceEEECCCCCCCCHHHHHHHH-hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Confidence 111233457899999999999999999999 999999999999996 8999999999999999999999975
Q ss_pred C
Q psy3698 181 F 181 (534)
Q Consensus 181 ~ 181 (534)
+
T Consensus 150 ~ 150 (166)
T 3md3_A 150 Q 150 (166)
T ss_dssp T
T ss_pred C
Confidence 5
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=1.4e-27 Score=213.36 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=128.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceecccc
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVVPWA 100 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVrPw~ 100 (534)
+++|||+|||+++||++|+++|++||+|..+.+++++.++ +++|||||+| ++ +|++|++ ..+..+.++.+.+....
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTG-YSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTT-EECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCC-ccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5899999999999999999999999999999999998887 8999999999 66 8888887 46667777777776211
Q ss_pred cCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 101 ISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 101 lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea 179 (534)
+.....+..+|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|+|||+|.+.++|.+||+.
T Consensus 82 ----------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 150 (168)
T 1b7f_A 82 ----------PGGESIKDTNLYVTNLPRTITDDQLDTIF-GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 150 (168)
T ss_dssp ----------CCSSTTTTCEEEEESCCTTCCHHHHHHHH-TSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred ----------CCcccCCCCCEEEeCCCCCCCHHHHHHhh-hcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 11223456899999999999999999999 999999999999998 999999999999999999999997
Q ss_pred cC
Q psy3698 180 AF 181 (534)
Q Consensus 180 ~~ 181 (534)
.+
T Consensus 151 l~ 152 (168)
T 1b7f_A 151 LN 152 (168)
T ss_dssp HT
T ss_pred hc
Confidence 65
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=4.3e-27 Score=218.71 Aligned_cols=162 Identities=14% Similarity=0.186 Sum_probs=128.3
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceecc
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVVP 98 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVrP 98 (534)
..+++|||+|||+++||++|+++|++||+|..+.++++..++ +++|||||+| ++ +|++|++ .....+.++.+.+..
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTM-KHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC--CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCC-ccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 346899999999999999999999999999999999998887 8999999999 66 8888888 467777777777752
Q ss_pred cccCCCCCCC-CCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHH
Q psy3698 99 WAISDSNYSP-QGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDA 176 (534)
Q Consensus 99 w~lsds~~~~-~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kA 176 (534)
.......... ..........++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 183 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVF-EAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDA 183 (216)
T ss_dssp CSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHH-TTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred CCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHH-hccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHH
Confidence 1100000000 0000012456899999999999999999999 999999999999997 999999999999999999999
Q ss_pred HHhcC-ceee
Q psy3698 177 IRAAF-IEVK 185 (534)
Q Consensus 177 Iea~~-veIk 185 (534)
|+..+ ..+.
T Consensus 184 ~~~l~g~~~~ 193 (216)
T 2qfj_A 184 VSSMNLFDLG 193 (216)
T ss_dssp HHHHTTCBCS
T ss_pred HHHccCCEeC
Confidence 99755 3443
No 9
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=4.5e-27 Score=230.34 Aligned_cols=142 Identities=7% Similarity=-0.029 Sum_probs=116.3
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcccccee
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEV 96 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQV 96 (534)
..+...++|||+|||+++||++|+++|++||+|..+.++++.. .++|||||+| ++ +|++||++....+.++.+.+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK---KNFRFARIEFARYDGALAAITKTHKVVGQNEIIV 112 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT---SSSEEEEEEESSHHHHHHHHTTTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC---CCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEE
Confidence 3455679999999999999999999999999999999999875 3589999999 65 99999987777777777776
Q ss_pred cccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCC-CeEEEEEecCCCCCCceEEEEEeCCHHHHHH
Q psy3698 97 VPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFG-DVVYAGIDTDKHKYPIGSGRITFGSTRAYSD 175 (534)
Q Consensus 97 rPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG-~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~k 175 (534)
.+ ....+|||+|||..+|+++|+++| +.|| .|..+.|..|+.+.++|||||+|.+.++|.+
T Consensus 113 ~~-----------------~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~ 174 (292)
T 2ghp_A 113 SH-----------------LTECTLWMTNFPPSYTQRNIRDLL-QDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARY 174 (292)
T ss_dssp EE-----------------CCSCEEEEECCCTTCCHHHHHHHH-HHTTCCCCEEECC-------CCEEEEECSSHHHHHH
T ss_pred EE-----------------CCCCEEEEECCCCCCCHHHHHHHH-HHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHH
Confidence 53 135789999999999999999999 9999 9999999999888899999999999999999
Q ss_pred HHHhcC
Q psy3698 176 AIRAAF 181 (534)
Q Consensus 176 AIea~~ 181 (534)
||+..+
T Consensus 175 A~~~l~ 180 (292)
T 2ghp_A 175 CVEKLN 180 (292)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 999654
No 10
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=2.2e-25 Score=217.58 Aligned_cols=134 Identities=15% Similarity=0.102 Sum_probs=116.8
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceeccc
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPW 99 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw 99 (534)
.+++|||+|||+++||++|+++|++|| |..+.+ + +++|||||+| ++ +|++|++. .+..+.++.+.+..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~-~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~- 91 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------D-KYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL- 91 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------E-TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------e-cCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe-
Confidence 468999999999999999999999999 888877 2 6689999999 55 88888865 66667777776652
Q ss_pred ccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHH
Q psy3698 100 AISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIR 178 (534)
Q Consensus 100 ~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIe 178 (534)
.....+|||+|||..+|+++|+++| +.||.|..+.|..|+ +|.++|||||+|.+.++|.+||+
T Consensus 92 ---------------~~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 155 (284)
T 3smz_A 92 ---------------QPTDALLCVANLPPSLTQQQFEELV-RPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKS 155 (284)
T ss_dssp ---------------CCCSCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred ---------------cCCCCEEEEcCCCCcCCHHHHHHHH-HhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHH
Confidence 1234789999999999999999999 999999999999997 99999999999999999999997
Q ss_pred hcC
Q psy3698 179 AAF 181 (534)
Q Consensus 179 a~~ 181 (534)
..+
T Consensus 156 ~l~ 158 (284)
T 3smz_A 156 DLL 158 (284)
T ss_dssp HHT
T ss_pred HhC
Confidence 654
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=2.1e-26 Score=211.32 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=120.1
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccC-----------CeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCC
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFG-----------PVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGN 89 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG-----------~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i 89 (534)
.+++|||||||+++||++|+++|++|| .|..+.+ + ++||||||+| ++ +|++||++.+..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~-~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------N-QDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------E-TTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------c-CCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 469999999999999999999999995 4444433 3 5689999999 54 8889997777777
Q ss_pred ccccceecccccCCCCCC----------CCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCC
Q psy3698 90 LCGRVEVVPWAISDSNYS----------PQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKY 158 (534)
Q Consensus 90 ~~k~VQVrPw~lsds~~~----------~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~ 158 (534)
.++.+.+........... .........+..+|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f-~~~G~v~~~~~~~~~~~~~ 154 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELL-TSFGPLKAFNLVKDSATGL 154 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHH-HTBSCEEEEEEEECTTTCS
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHH-HHcCCccEEEEeecCCCCC
Confidence 778777763221100000 00011122456899999999999999999999 999999999999997 999
Q ss_pred CceEEEEEeCCHHHHHHHHHhcC-cee
Q psy3698 159 PIGSGRITFGSTRAYSDAIRAAF-IEV 184 (534)
Q Consensus 159 pKGfGFVtF~d~EsA~kAIea~~-veI 184 (534)
++|||||+|.+.++|.+||+..+ ..+
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~ 181 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQL 181 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEE
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 99999999999999999999754 444
No 12
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=1.8e-25 Score=218.15 Aligned_cols=168 Identities=15% Similarity=0.158 Sum_probs=133.8
Q ss_pred CccccCCCCCCCCCCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHH
Q psy3698 5 QKTWEGVLPLRTQFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILG 82 (534)
Q Consensus 5 ~~tWsG~lPPR~~~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaAL 82 (534)
++.++.-.+|.. ......++|||||||+++||++|+++|++||.|..+.+++ +||||||+| +. +|++|+
T Consensus 5 ~~~~~~~~~p~~--~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-------~kg~afV~f~~~~~A~~A~ 75 (261)
T 3sde_A 5 TIDIKSFLKPGE--KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-------DRGFGFIRLESRTLAEIAK 75 (261)
T ss_dssp --CCCCCCCTTC--CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-------TTTEEEEECSSHHHHHHHH
T ss_pred ccCccccCCCCC--CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-------CCcEEEEEECCHHHHHHHH
Confidence 344554444433 6677889999999999999999999999999999998854 468999999 55 888888
Q ss_pred h-hcCCCCccccceecccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCce
Q psy3698 83 Q-WATEGNLCGRVEVVPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIG 161 (534)
Q Consensus 83 q-~ssr~i~~k~VQVrPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKG 161 (534)
+ ..+..+.++.+.+... .+..+|||+|||..+|+++|+++| +.||.|..|.|..|++|.++|
T Consensus 76 ~~l~g~~i~g~~l~v~~a----------------~~~~~l~v~nl~~~~t~~~l~~~F-~~~G~i~~v~i~~~~~g~~~g 138 (261)
T 3sde_A 76 AELDGTILKSRPLRIRFA----------------THGAALTVKNLSPVVSNELLEQAF-SQFGPVEKAVVVVDDRGRATG 138 (261)
T ss_dssp HHHTTCEETTEECEEEEC----------------CCSSEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEEETTSCEEE
T ss_pred HHcCCcEECCceeEeeec----------------ccCCcccccCCCCCCCHHHHHHHH-HhcCCeEEEEeeeCCCCCcCc
Confidence 7 4666777777777621 135789999999999999999999 999999999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhc-Cceeeccceeeeeeeccc
Q psy3698 162 SGRITFGSTRAYSDAIRAA-FIEVKSGRICKKLQIDPY 198 (534)
Q Consensus 162 fGFVtF~d~EsA~kAIea~-~veIk~~k~~KrVeIkPy 198 (534)
||||+|.+.++|.+||+.. ...+......+.|.|++.
T Consensus 139 ~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 139 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp EEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeec
Confidence 9999999999999999986 333332222345555544
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=4.8e-26 Score=205.98 Aligned_cols=148 Identities=12% Similarity=0.049 Sum_probs=122.9
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcccccee
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEV 96 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQV 96 (534)
.++...++|||||||+++||++|+++|++||.|.. .++++..++ ++||||||+| ++ +|++||++.+..+.++.+.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTG-TNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEE-TTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCC-ccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEE
Confidence 35566799999999999999999999999999876 455666666 8999999999 66 89999987777777888777
Q ss_pred cccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHH
Q psy3698 97 VPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDA 176 (534)
Q Consensus 97 rPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kA 176 (534)
...... ......+.++|||+|||..+|+++|+++| +.||.|..+ +.++.++|||||+|.+.++|.+|
T Consensus 86 ~~~~~~--------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F-~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A 152 (175)
T 1fje_B 86 EKPKGR--------DSKKVRAARTLLAKNLSFNITEDELKEVF-EDALEIRLV----SQDGKSKGIAYIEFKSEADAEKN 152 (175)
T ss_dssp ECCCCS--------SCSTTGGGGEEEEESCCSSCCHHHHHHHC-TTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHH
T ss_pred ecCCCc--------cccccccCCEEEEeCCCCCCCHHHHHHHH-HhcCeEEEe----cCCCCCceEEEEEECCHHHHHHH
Confidence 632211 12223457899999999999999999999 899988766 56889999999999999999999
Q ss_pred HHhcC
Q psy3698 177 IRAAF 181 (534)
Q Consensus 177 Iea~~ 181 (534)
|+..+
T Consensus 153 ~~~l~ 157 (175)
T 1fje_B 153 LEEKQ 157 (175)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 99865
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.93 E-value=3e-25 Score=199.35 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=120.8
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhcc----C-------CeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCC
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQF----G-------PVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGN 89 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqF----G-------~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i 89 (534)
.+++|||||||+++||++|+++|++| | .|..+.+. ++||||||+| ++ +|++|++..+..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-------~~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-------QDKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-------TTTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-------CCCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 46899999999999999999999999 6 56655553 4579999999 55 8888987777778
Q ss_pred ccccceecccccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeC
Q psy3698 90 LCGRVEVVPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFG 168 (534)
Q Consensus 90 ~~k~VQVrPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~ 168 (534)
.++.+.+.... .........+|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.
T Consensus 76 ~g~~i~v~~~~----------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~f~ 144 (172)
T 2g4b_A 76 QGQSLKIRRPH----------DYQPLPGAHKLFIGGLPNYLNDDQVKELL-TSFGPLKAFNLVKDSATGLSKGYAFCEYV 144 (172)
T ss_dssp TTEECEEECCS----------SCCCCTTTTCEEEECCCTTCCHHHHHHHH-HTTSCEEEEEEEECTTTCSEEEEEEEEES
T ss_pred cCceeeecCCc----------ccCCCCCCCEEEEEcCCCcCCHHHHHHHH-HhcCCceEEEEEecCCCCCcceEEEEEeC
Confidence 88887776211 11112346889999999999999999999 899999999999997 9999999999999
Q ss_pred CHHHHHHHHHhcC-ceee
Q psy3698 169 STRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 169 d~EsA~kAIea~~-veIk 185 (534)
+.++|.+||+..+ ..+.
T Consensus 145 ~~~~A~~A~~~l~g~~~~ 162 (172)
T 2g4b_A 145 DINVTDQAIAGLNGMQLG 162 (172)
T ss_dssp STTHHHHHHHHHTTCEET
T ss_pred CHHHHHHHHHHcCCCEEC
Confidence 9999999999754 4443
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.92 E-value=2.1e-24 Score=205.84 Aligned_cols=158 Identities=11% Similarity=0.067 Sum_probs=122.0
Q ss_pred ccCeEEEeCCC-CCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceecc
Q psy3698 23 LSNKIFIGGVP-WDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVVP 98 (534)
Q Consensus 23 ~SrKVFVGNLP-~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVrP 98 (534)
..++||||||| +++|+++|+++|++||.|..++++++ .||||||+| +. +|++||+ +++..+.++.+.|..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS------KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT------STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 35799999999 89999999999999999999999875 369999999 55 8888887 466667777766652
Q ss_pred cccCCC----------------CCCCC---C--------CCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCe--EEE
Q psy3698 99 WAISDS----------------NYSPQ---G--------HSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDV--VYA 149 (534)
Q Consensus 99 w~lsds----------------~~~~~---~--------~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~V--v~V 149 (534)
...... .+... . ......+.++|||+|||..+|+++|+++| +.||.| +.+
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F-~~~G~v~~~~v 155 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEIC-DELGVKRPTSV 155 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHH-HHHTCCCCSEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHH-HhcCCcceEEE
Confidence 211000 00000 0 00012356789999999999999999999 999999 899
Q ss_pred EEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceeeccc
Q psy3698 150 GIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVKSGR 188 (534)
Q Consensus 150 ~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk~~k 188 (534)
+|..|+ +.++|+|||+|.+.++|.+||...+ .++....
T Consensus 156 ~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 156 KVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp EECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred EEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 998876 5567999999999999999999876 4454443
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=2.2e-24 Score=210.48 Aligned_cols=149 Identities=9% Similarity=0.043 Sum_probs=127.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceecccc
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVVPWA 100 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVrPw~ 100 (534)
.++|||+|||+++|+++|+++|++||.|..+.++++..++ +++|||||+| +. +|++|++ ..+..+.++.+.+....
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g-~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTG-QSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCC-ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 4789999999999999999999999999999999998888 9999999999 55 8888884 46677777777775322
Q ss_pred cCCCCCCCCCCCCCCCCCceeEeccccCcC-CHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 101 ISDSNYSPQGHSTKLEPGKTIFVGALHGRL-TAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 101 lsds~~~~~~~s~~~d~~ktIFVGNLP~~~-TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea 179 (534)
... .........+|||+|||..+ |+++|+++| +.||.|..+.|..|++|.++|+|||+|.+.++|.+||+.
T Consensus 174 ~~~-------~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 245 (284)
T 3smz_A 174 AGQ-------LTPALLHSRCLCVDRLPPGFNDVDALCRAL-SAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQ 245 (284)
T ss_dssp GGG-------CCTTTTSCSEEEEECCCTTCCCHHHHHHHT-CSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHH
T ss_pred CCC-------CCcccCCccEEEEecCCcccCCHHHHHHHh-hCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHH
Confidence 111 11122456899999999995 999999999 999999999999999999999999999999999999997
Q ss_pred cC
Q psy3698 180 AF 181 (534)
Q Consensus 180 ~~ 181 (534)
.+
T Consensus 246 l~ 247 (284)
T 3smz_A 246 AD 247 (284)
T ss_dssp HT
T ss_pred hC
Confidence 65
No 17
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.91 E-value=2.7e-23 Score=202.55 Aligned_cols=150 Identities=13% Similarity=0.049 Sum_probs=117.3
Q ss_pred CccCeEEEeCCCCCCCHHHHH----HHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccc
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLL----TVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRV 94 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLr----e~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~V 94 (534)
..+++|||+|||+++||++|+ ++|++||.|..+.+++ ++ ++||||||+| +. +|++|++. .+..+.++.+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SL-KMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CC-CcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 447899999999999999977 8999999999998887 45 7899999999 55 88888854 5566666666
Q ss_pred eecccccCCCCC--------CC----------------------------------------------------------
Q psy3698 95 EVVPWAISDSNY--------SP---------------------------------------------------------- 108 (534)
Q Consensus 95 QVrPw~lsds~~--------~~---------------------------------------------------------- 108 (534)
.|.... ..... ..
T Consensus 83 ~v~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 83 RIQYAK-TDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEec-cCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 654211 11000 00
Q ss_pred ------------------------------------CCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEe
Q psy3698 109 ------------------------------------QGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGID 152 (534)
Q Consensus 109 ------------------------------------~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~ 152 (534)
........+.++|||+|||..+|+++|+++| +.||.|..|.|.
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F-~~~G~i~~v~~~ 240 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLF-NQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHH-HhcCCeEEEEEe
Confidence 0000112356889999999999999999999 999999999998
Q ss_pred cCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 153 TDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 153 ~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.++ +|||||+|.+.++|.+||+..+
T Consensus 241 ~~~----~g~afV~f~~~~~A~~A~~~l~ 265 (282)
T 3pgw_A 241 PGR----HDIAFVEFDNEVQAGAARDALQ 265 (282)
T ss_pred cCC----CcEEEEEeCCHHHHHHHHHHcC
Confidence 754 6899999999999999999866
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.90 E-value=2e-23 Score=204.48 Aligned_cols=152 Identities=8% Similarity=0.009 Sum_probs=119.1
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccC-CeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceecc
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFG-PVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVVP 98 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG-~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVrP 98 (534)
..++|||+|||+++|+++|+++|++|| +|..+.++++.. + +++|||||+| +. +|++|++ +.+..+.++.+.+..
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-N-TSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-C-CcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 368999999999999999999999999 999999998876 5 7899999999 55 8888888 577777777777752
Q ss_pred cccCCCCCCCCCCCCCCCCCceeEeccccCc-CCHHHHHHHhhhcCCCeEEEEEecCCC--CCCceEEEEEeCCHHHHHH
Q psy3698 99 WAISDSNYSPQGHSTKLEPGKTIFVGALHGR-LTAQALYNVMNDLFGDVVYAGIDTDKH--KYPIGSGRITFGSTRAYSD 175 (534)
Q Consensus 99 w~lsds~~~~~~~s~~~d~~ktIFVGNLP~~-~TeedLreiF~s~FG~Vv~V~I~~DkT--G~pKGfGFVtF~d~EsA~k 175 (534)
.... .... .......+..+|||+|||.. +|+++|+++| +.||.|..+.|..|+. +.++|||||+|.+.++|.+
T Consensus 194 a~~~-~~~~--~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F-~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~ 269 (292)
T 2ghp_A 194 SNPL-EKSK--RTDSATLEGREIMIRNLSTELLDENLLRESF-EGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 269 (292)
T ss_dssp CCCC------------CCTTTEEEEEEECTTTCCHHHHHHHH-GGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHH
T ss_pred CCCC-cccc--cccccCCCCceEEEECCCcccCCHHHHHHHH-hccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHH
Confidence 2111 1100 01123345789999999999 9999999999 9999999999999985 9999999999999999999
Q ss_pred HHHhcC
Q psy3698 176 AIRAAF 181 (534)
Q Consensus 176 AIea~~ 181 (534)
|| ..+
T Consensus 270 A~-~l~ 274 (292)
T 2ghp_A 270 AL-QMN 274 (292)
T ss_dssp HG-GGT
T ss_pred HH-Hhc
Confidence 99 655
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.90 E-value=7.6e-23 Score=195.71 Aligned_cols=150 Identities=10% Similarity=0.019 Sum_probs=118.3
Q ss_pred CCccCeEEEeCCCC-CCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCcccccee
Q psy3698 21 EILSNKIFIGGVPW-DTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEV 96 (534)
Q Consensus 21 p~~SrKVFVGNLP~-diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQV 96 (534)
...+++|||+|||+ ++||++|+++|++||+|..+.+++++ +|||||+| ++ +|++|++ ..+..+.++.+.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~------~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT------SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC------CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34579999999999 99999999999999999999999864 68999999 55 8888887 5667777777777
Q ss_pred cccccCCCCCCC-------------------C-CC-----CCCCCCCceeEeccccCcCCHHHHHHHhhhcCC-CeEEEE
Q psy3698 97 VPWAISDSNYSP-------------------Q-GH-----STKLEPGKTIFVGALHGRLTAQALYNVMNDLFG-DVVYAG 150 (534)
Q Consensus 97 rPw~lsds~~~~-------------------~-~~-----s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG-~Vv~V~ 150 (534)
............ . .. .....+.++|||+|||..+|+++|+++| +.|| .|..+.
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~~i~~v~ 183 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLF-SSNGGVVKGFK 183 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHH-HTTSCCEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHH-HHcCCCeeEEE
Confidence 532211000000 0 00 0112346899999999999999999999 9999 999999
Q ss_pred EecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 151 IDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 151 I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
|..+ .+|+|||+|.+.++|.+||+..+
T Consensus 184 i~~~----~~g~afV~f~~~~~A~~Ai~~l~ 210 (229)
T 2adc_A 184 FFQK----DRKMALIQMGSVEEAVQALIDLH 210 (229)
T ss_dssp ECSS----STTCEEEEESSHHHHHHHHHHHT
T ss_pred EEEC----CCcEEEEEECCHHHHHHHHHHHC
Confidence 8653 47999999999999999999765
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.90 E-value=5.2e-23 Score=190.31 Aligned_cols=147 Identities=10% Similarity=0.048 Sum_probs=116.8
Q ss_pred cCeEEEeCCCC-CCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceeccc
Q psy3698 24 SNKIFIGGVPW-DTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVVPW 99 (534)
Q Consensus 24 SrKVFVGNLP~-diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVrPw 99 (534)
+++|||+|||+ ++||++|+++|++||.|..+.+++++ +|||||+| ++ +|++|++ ..+..+.++.+.+...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~------~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC------SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 58999999999 99999999999999999999998864 68999999 54 8888887 5677777777776532
Q ss_pred ccCCCCC----------------------CC---CCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCC-CeEEEEEec
Q psy3698 100 AISDSNY----------------------SP---QGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFG-DVVYAGIDT 153 (534)
Q Consensus 100 ~lsds~~----------------------~~---~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG-~Vv~V~I~~ 153 (534)
....... .. ........+..+|||+|||..+|+++|+++| +.|| .|..+.|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f-~~~G~~v~~v~i~~ 155 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLF-SSNGGVVKGFKFFQ 155 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHH-HHTTSCCCEEEESS
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHH-HHcCCCceEEEEEe
Confidence 2110000 00 0000112457899999999999999999999 9999 999999966
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 154 DKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 154 DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
+ .+|+|||+|.+.++|.+||+..+
T Consensus 156 ~----~~g~afV~f~~~~~A~~A~~~l~ 179 (198)
T 1qm9_A 156 K----DRKMALIQMGSVEEAVQALIDLH 179 (198)
T ss_dssp T----TSSCEEEECSSHHHHHHHHHHHT
T ss_pred C----CCcEEEEEeCCHHHHHHHHHHhc
Confidence 4 37999999999999999999765
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=1.6e-18 Score=150.26 Aligned_cols=106 Identities=13% Similarity=0.028 Sum_probs=64.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceecccc
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPWA 100 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw~ 100 (534)
+.+|||||||+++||++|+++|++||+|..+.+++|.. .+||||||+| +. +|++||+. ....+.++.+.|..+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~---~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN---GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT---EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC---CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 57899999999999999999999999999999998864 5799999999 55 88888864 7777888888876443
Q ss_pred cCCCCCCCCCCCCCCCCCceeEeccccCcCCHHH
Q psy3698 101 ISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQA 134 (534)
Q Consensus 101 lsds~~~~~~~s~~~d~~ktIFVGNLP~~~Teed 134 (534)
....... ..........+|||+|||.++|++.
T Consensus 82 ~~~~~~~--~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREA--ELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC------------------------------
T ss_pred Ccccccc--ccccccCCCCceEeCCCCCCccccc
Confidence 2211111 1122223446799999999999874
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=6.6e-17 Score=145.68 Aligned_cols=124 Identities=17% Similarity=0.044 Sum_probs=87.5
Q ss_pred EeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcC--CCCcc------ccceecccccCCCCCCCCCCCCCCCCCceeEe
Q psy3698 54 EWPQGTPESPTAPKAISLDVI-SE-LVLILGQWAT--EGNLC------GRVEVVPWAISDSNYSPQGHSTKLEPGKTIFV 123 (534)
Q Consensus 54 v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ss--r~i~~------k~VQVrPw~lsds~~~~~~~s~~~d~~ktIFV 123 (534)
+.++++.. +++|||||+| +. +|++|++... ..+.+ .......+..... . ..........+|||
T Consensus 3 ~kl~ln~~---~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 3 YKLILNGK---TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHH---H-HHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEECS---SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCC---S-SCCCCCCBCCEEEE
T ss_pred EEEEecCc---cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccc---c-ccccCCCCCCEEEE
Confidence 34555543 6899999999 55 8888886511 11111 1111111111100 0 11222345689999
Q ss_pred ccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 124 GALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 124 GNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
+|||..+|+++|+++| +.||.|..+.|..|+ ++.+||||||+|.+.++|.+||+..+ ..+.
T Consensus 76 ~nl~~~~~~~~l~~~F-~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 138 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVF-EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 138 (158)
T ss_dssp ESCCTTCCHHHHHHHH-HHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS
T ss_pred eCCCCCCCHHHHHHHH-HhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 9999999999999999 999999999999997 99999999999999999999998755 4443
No 23
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=135.01 Aligned_cols=86 Identities=29% Similarity=0.381 Sum_probs=73.3
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCC---CCCCCcEEEEEe-hH-HHHHHHhh-----------
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPES---PTAPKAISLDVI-SE-LVLILGQW----------- 84 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~T---g~rsRGYAFVtF-sE-sAeaALq~----------- 84 (534)
...+++|||||||+++||++|+++|++||+|. +.++.+..+ + ++||||||+| ++ +|++||+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g-~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~ 82 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYF-PPKGYAFLLFQEESSVQALIDACLEEDGKLYLC 82 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCS-CTTSEEEECCSSHHHHHHHHHHSEEETTEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCC-CcccEEEEEECCHHHHHHHHHhhhhcCCcEEEe
Confidence 34579999999999999999999999999999 677777665 5 8999999999 55 88888875
Q ss_pred -cCCCCccccceecccccCCCCCCC
Q psy3698 85 -ATEGNLCGRVEVVPWAISDSNYSP 108 (534)
Q Consensus 85 -ssr~i~~k~VQVrPw~lsds~~~~ 108 (534)
..+.++.+.++++||.+.+.+|..
T Consensus 83 ~~~~~~~~~~~~v~p~~~~d~~~~~ 107 (114)
T 2dnl_A 83 VSSPTIKDKPVQIRPWNLSDSDFVM 107 (114)
T ss_dssp ECCSSSCSEEEEEECCCCCCCCCCC
T ss_pred ccCCCcCCCeeeccCCcccCCceec
Confidence 223677889999999999998876
No 24
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=1.3e-15 Score=139.28 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=62.9
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
...++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.++|||||+|.+.++|.+||+.....+.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~ 80 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHF-EQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD 80 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEEC
Confidence 456899999999999999999999 999999999999998 899999999999999999999987544443
No 25
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=1.2e-15 Score=136.37 Aligned_cols=63 Identities=21% Similarity=0.315 Sum_probs=58.7
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CC--CCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HK--YPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG--~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.++|||+|||.++|+++|+++| +.||.|..+.|..|+ ++ +++|||||+|.+.++|.+||+..+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 68 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELF-EQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH 68 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ceEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 5789999999999999999999 999999999999998 44 899999999999999999998754
No 26
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=126.25 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=72.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceeccccc
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVPWAI 101 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrPw~l 101 (534)
++|||||||+++||++|+++|++||+|..+.++++ ++|||||+| ++ +|++|++. ....+.++.+.|.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 58999999999999999999999999999999886 579999999 55 88888874 66677888887763322
Q ss_pred CCCCCCCCCCCCCCCCCceeEecccc
Q psy3698 102 SDSNYSPQGHSTKLEPGKTIFVGALH 127 (534)
Q Consensus 102 sds~~~~~~~s~~~d~~ktIFVGNLP 127 (534)
..................+||||||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 75 MPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCCcccCCCCCccccCCCceecCCCC
Confidence 22111111122223446889999996
No 27
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.60 E-value=5.3e-15 Score=131.71 Aligned_cols=64 Identities=22% Similarity=0.299 Sum_probs=59.9
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
+.++|||+|||..+|+++|+++| +.||.|..+.|..++ ++.++|||||+|.+.++|.+||+...
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 66 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALF-RAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLN 66 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CccEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcC
Confidence 45789999999999999999999 999999999999997 89999999999999999999998644
No 28
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.9e-15 Score=127.27 Aligned_cols=78 Identities=14% Similarity=0.050 Sum_probs=69.6
Q ss_pred CCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccce
Q psy3698 18 FSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVE 95 (534)
Q Consensus 18 ~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQ 95 (534)
+......++|||||||+++||++|+++|++||+|..+.+++|+. + ++||||||+| ++ +|++||++....+.++.+.
T Consensus 5 ~~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g-~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~ 82 (103)
T 1s79_A 5 LKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-K-AFKGSIFVVFDSIESAKKFVETPGQKYKETDLL 82 (103)
T ss_dssp CSSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-T-SCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCE
T ss_pred ccccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-C-CCccEEEEEECCHHHHHHHHHcCCCEECCEEEE
Confidence 45567789999999999999999999999999999999999987 6 9999999999 66 9999999877788888877
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 83 V~ 84 (103)
T 1s79_A 83 IL 84 (103)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 29
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.57 E-value=2.8e-14 Score=126.27 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=59.8
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f-~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 65 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLF-GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 65 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cceEEEcCCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcC
Confidence 5789999999999999999999 999999999999998 99999999999999999999998644
No 30
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.57 E-value=3.5e-15 Score=128.28 Aligned_cols=88 Identities=20% Similarity=0.183 Sum_probs=65.1
Q ss_pred ccCCCCCCCCCCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhc
Q psy3698 8 WEGVLPLRTQFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWA 85 (534)
Q Consensus 8 WsG~lPPR~~~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~s 85 (534)
|+..++... .+++...++|||||||+++||++|+++|++||+|..+.+++++.++ ++||||||+| ++ +|++||+..
T Consensus 10 ~~~~~~~~~-~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg-~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 10 HSSGLVPRG-SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTK-RSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp -----------------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTC-CCTTCEEEEESSHHHHHHHHHSS
T ss_pred ccCCCCccc-cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCC-CcCcEEEEEECCHHHHHHHHHHC
Confidence 343333333 5777788999999999999999999999999999999999999888 9999999999 66 899999876
Q ss_pred CCCCccccceec
Q psy3698 86 TEGNLCGRVEVV 97 (534)
Q Consensus 86 sr~i~~k~VQVr 97 (534)
...+.++.+.+.
T Consensus 88 ~~~l~g~~l~V~ 99 (109)
T 2rs2_A 88 RHELDSKTIDPK 99 (109)
T ss_dssp CEEETTEEEEEE
T ss_pred CCcCCCEEEEEE
Confidence 666777777665
No 31
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.8e-14 Score=126.14 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=57.8
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
++|||+|||.++|+++|+++| +.||.|..+.|..|+.+.++|||||+|.+.++|.+||+..+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYF-QVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHH-GGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEECCCCCcCCHHHHHHHH-HhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 589999999999999999999 99999999999999988899999999999999999997644
No 32
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.57 E-value=3.8e-15 Score=126.59 Aligned_cols=75 Identities=9% Similarity=-0.016 Sum_probs=66.5
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
...++|||||||+++||++|+++|++||+|..+.+++|+.++ ++||||||+| +. +|++|++. .+..+.++.+.|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG-HSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSC-CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCC-cccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346799999999999999999999999999999999999888 9999999999 55 88888874 6777777777775
No 33
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-14 Score=120.82 Aligned_cols=78 Identities=27% Similarity=0.280 Sum_probs=69.7
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
.....++|||+|||+++||++|+++|++||+|..+.+++++.++ ++||||||+| ++ +|++||++....+.++.+.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQ-RPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTC-SCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-CCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEE
Confidence 34556999999999999999999999999999999999998888 8999999999 66 899999887778888888886
Q ss_pred c
Q psy3698 98 P 98 (534)
Q Consensus 98 P 98 (534)
.
T Consensus 85 ~ 85 (99)
T 2dgs_A 85 R 85 (99)
T ss_dssp E
T ss_pred E
Confidence 3
No 34
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.56 E-value=2.1e-15 Score=125.97 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=63.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccC-CeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhc--CCCCccccceec
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFG-PVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWA--TEGNLCGRVEVV 97 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG-~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~s--sr~i~~k~VQVr 97 (534)
+++|||+|||+++||++|+++|++|| +|..+.+++|+.++ ++||||||+| +. +|++||+.. ...+.++.+.|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~-~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSG-QSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSC-CCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCC-CcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEE
Confidence 57899999999999999999999999 89999999999988 9999999999 55 899999753 334667777775
No 35
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.56 E-value=4e-15 Score=121.33 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=67.1
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcccccee
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEV 96 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQV 96 (534)
.++...++|||+|||+++||++|+++|++||+|..+.+++++.++ +++|||||+| ++ +|++|++.....+.++.+.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG-RSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTC-CEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCC-ccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 345667999999999999999999999999999999999998888 9999999999 55 89999987666677666665
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 85 ~ 85 (87)
T 3s7r_A 85 K 85 (87)
T ss_dssp E
T ss_pred E
Confidence 4
No 36
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.55 E-value=9.5e-15 Score=115.97 Aligned_cols=71 Identities=23% Similarity=0.191 Sum_probs=64.3
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 26 KVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
||||+|||+++|+++|+++|++||+|..+.+++++.++ +++|||||+| ++ +|++|+++....+.++.+.+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTN-RHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSST-TSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-CcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEE
Confidence 69999999999999999999999999999999998888 8999999999 66 899999887777877777664
No 37
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.7e-14 Score=119.43 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=69.3
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
.++...++|||+|||+++|+++|+++|++||+|..+.+++++.++ ++||||||+| ++ +|++|++. ....+.++.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTG-QHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSC-SBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-cCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 455677999999999999999999999999999999999998888 8999999999 55 88888885 66778888887
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 89 v~ 90 (105)
T 1x5u_A 89 VN 90 (105)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 38
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=126.32 Aligned_cols=73 Identities=8% Similarity=-0.020 Sum_probs=64.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
.++|||+|||+++||++|+++|++||+|..+.+++|+.|+ ++||||||+| +. +|++|++. +...+.++.+.|.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg-~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTR-KHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCC-ceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4689999999999999999999999999999999999988 9999999999 55 88888874 6677777777665
No 39
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=121.85 Aligned_cols=67 Identities=21% Similarity=0.339 Sum_probs=61.8
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+|||+|||.++|+++|+++| +.||.|..+.|..|+ +|.+||||||+|.+.++|.+||+..+ ..+.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 87 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLF-SSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ 87 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4689999999999999999999 999999999999998 89999999999999999999998754 4444
No 40
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.5e-14 Score=124.42 Aligned_cols=79 Identities=20% Similarity=0.161 Sum_probs=69.6
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcccccee
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEV 96 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQV 96 (534)
.++...++|||+|||+++||++|+++|++||+|..+.+++++.++ ++||||||+| +. +|++||+.....+.++.+.|
T Consensus 22 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V 100 (116)
T 1x4b_A 22 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEP 100 (116)
T ss_dssp CHHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTS-SCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCC-CcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEE
Confidence 445566899999999999999999999999999999999998888 8999999999 65 99999988666777788777
Q ss_pred cc
Q psy3698 97 VP 98 (534)
Q Consensus 97 rP 98 (534)
..
T Consensus 101 ~~ 102 (116)
T 1x4b_A 101 KR 102 (116)
T ss_dssp EC
T ss_pred EE
Confidence 63
No 41
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.7e-14 Score=120.53 Aligned_cols=78 Identities=12% Similarity=0.015 Sum_probs=67.5
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeE-EeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKV-EWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~-v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQ 95 (534)
......++|||+|||+++||++|+++|++||.|.. +.++++ .++ ++||||||+| ++ +|++||+.....+.++.+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g-~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSS-CBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCC-CcceEEEEEECCHHHHHHHHHhCcchhCCcEEE
Confidence 34456789999999999999999999999999987 778887 667 8999999999 66 9999999877788888887
Q ss_pred ecc
Q psy3698 96 VVP 98 (534)
Q Consensus 96 VrP 98 (534)
|.+
T Consensus 88 v~~ 90 (104)
T 1wg5_A 88 IFK 90 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 42
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=5.6e-14 Score=117.13 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=67.9
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQV 96 (534)
.....++|||+|||+++|+++|+++|++||+|..+.+++++.++ +++|||||+| +. +|++|++ +....+.++.+.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTK-KPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTC-CCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCC-CcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 44567899999999999999999999999999999999998888 9999999999 55 8888885 4667777788877
Q ss_pred cc
Q psy3698 97 VP 98 (534)
Q Consensus 97 rP 98 (534)
..
T Consensus 83 ~~ 84 (99)
T 1whw_A 83 LP 84 (99)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 43
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.52 E-value=4.6e-14 Score=119.05 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=67.0
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCC---ccc
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGN---LCG 92 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i---~~k 92 (534)
..+...++|||+|||+++||++|+++|++||+|..+.+++++.++ ++||||||+| +. +|++|++. ....+ .++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTG-MHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSC-SCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC-CcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 345567899999999999999999999999999999999999888 9999999999 55 88888874 55554 667
Q ss_pred cceec
Q psy3698 93 RVEVV 97 (534)
Q Consensus 93 ~VQVr 97 (534)
.+.|.
T Consensus 87 ~l~v~ 91 (106)
T 2dgp_A 87 PIQVK 91 (106)
T ss_dssp CCEEE
T ss_pred eEEEE
Confidence 77776
No 44
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.52 E-value=1.2e-14 Score=115.25 Aligned_cols=71 Identities=23% Similarity=0.239 Sum_probs=63.5
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 26 KVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
||||+|||+++||++|+++|++||+|..+.+++++.++ +++|||||+| ++ +|++|++.....+.++.+.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~ 73 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN-KRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 73 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCS-SSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-CcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 69999999999999999999999999999999998888 8999999999 54 999999987677777766654
No 45
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.52 E-value=3.8e-14 Score=122.92 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=63.4
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+.++|||+|||..+|+++|+++| ++||.|..|.|+.|+ ++++||||||+|.+.++|.+||+..+ .++.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F-~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~ 74 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMC-RKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM 74 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCCCCCHHHHHHHH-HhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 356899999999999999999999 999999999999998 89999999999999999999999865 4444
No 46
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.52 E-value=6.1e-14 Score=121.99 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=66.4
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
....++|||+|||+++|+++|+++|++||+|..+.++++. ++ +++|||||+| +. +|++|++. .+..+.++.+.|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g-~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TS-KSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TT-TCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CC-CcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456899999999999999999999999999999999988 67 8999999999 55 88888874 6677788888776
Q ss_pred c
Q psy3698 98 P 98 (534)
Q Consensus 98 P 98 (534)
.
T Consensus 82 ~ 82 (116)
T 2fy1_A 82 Q 82 (116)
T ss_dssp E
T ss_pred E
Confidence 3
No 47
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=115.06 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=64.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
++|||+|||+++|+++|+++|++||+|..+.+++++.++ +++|||||+| ++ +|++|++.....+.++.+.+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTK-RSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 74 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSS-SCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCC-CcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEE
Confidence 589999999999999999999999999999999998888 9999999999 55 899999875577777777665
No 48
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.9e-14 Score=116.41 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=66.7
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceec
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVV 97 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVr 97 (534)
.+++|||+|||+++||++|+++|++||+|..+.+++++.++ +++|||||+| +. +|++|++ +....+.++.+.|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTG-RSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 80 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSC-CCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCC-ceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 45899999999999999999999999999999999998888 9999999999 55 8888888 47778888888876
No 49
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=7.1e-14 Score=117.83 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=68.3
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCC-CCCCCCCCcEEEEEe-hH-HHHHHHhh--cCCCCcccc
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGT-PESPTAPKAISLDVI-SE-LVLILGQW--ATEGNLCGR 93 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD-~~Tg~rsRGYAFVtF-sE-sAeaALq~--ssr~i~~k~ 93 (534)
......++|||+|||+++||++|+++|++||+|..+.++++ +.++ +++|||||+| +. +|++||+. ....+.++.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTG-AHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSC-SSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCC-CcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 45566799999999999999999999999999999999998 6777 8999999999 55 88888875 577788888
Q ss_pred ceec
Q psy3698 94 VEVV 97 (534)
Q Consensus 94 VQVr 97 (534)
+.|.
T Consensus 89 l~v~ 92 (107)
T 2cph_A 89 LVLE 92 (107)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8776
No 50
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.52 E-value=4e-14 Score=115.39 Aligned_cols=70 Identities=23% Similarity=0.291 Sum_probs=63.9
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ +++++|||||+|.+.++|.+||+....++.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~ 78 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYF-TKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLD 78 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEEC
Confidence 3457899999999999999999999 999999999999997 899999999999999999999987665554
No 51
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.51 E-value=7.6e-13 Score=128.75 Aligned_cols=64 Identities=17% Similarity=0.348 Sum_probs=58.0
Q ss_pred CCCCceeEeccccCcCCHHHHH----HHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 115 LEPGKTIFVGALHGRLTAQALY----NVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLr----eiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+.++|||+|||..+|+++|+ ++| +.||.|..|.|.. ++++||||||+|.+.++|.+||+..+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F-~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~ 73 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQ 73 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHH-hccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhc
Confidence 4567899999999999999977 899 9999999998876 77899999999999999999997755
No 52
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.51 E-value=5.2e-14 Score=117.81 Aligned_cols=78 Identities=14% Similarity=0.041 Sum_probs=67.2
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeE--------EeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCC
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKV--------EWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATE 87 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~--------v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr 87 (534)
..+...++|||||||+++||++|+++|++||.|.. +.+++++.++ ++||||||+| ++ +|++|++ +.+.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETG-KLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTC-SEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCC-CeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 34556799999999999999999999999999998 9999998888 9999999999 55 8888887 4667
Q ss_pred CCccccceec
Q psy3698 88 GNLCGRVEVV 97 (534)
Q Consensus 88 ~i~~k~VQVr 97 (534)
.+.++.+.|.
T Consensus 87 ~~~g~~l~V~ 96 (99)
T 2la6_A 87 EFSGNPIKVS 96 (99)
T ss_dssp BSSSSBCEEE
T ss_pred EeCCcEEEEE
Confidence 7777776664
No 53
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.51 E-value=3.1e-14 Score=116.02 Aligned_cols=75 Identities=17% Similarity=0.113 Sum_probs=67.1
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceecc
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVVP 98 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVrP 98 (534)
..++|||+|||+++|+++|+++|++||+|..+.+++++.++ +++|||||+| +. +|++|+.+....+.++.+.|.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSG-HPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSS-SCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCC-CcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEE
Confidence 46899999999999999999999999999999999998888 9999999999 44 8888887677788888888764
No 54
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.51 E-value=7.7e-14 Score=129.31 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=58.4
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..++|||+|||.++|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 91 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAF-APFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 91 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHH-GGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHS
T ss_pred cCCEEEEECCCCCCCHHHHHHHH-HhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHcc
Confidence 35789999999999999999999 999999999999998 99999999999999999999998644
No 55
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.4e-14 Score=117.23 Aligned_cols=81 Identities=11% Similarity=0.224 Sum_probs=69.2
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeE-EEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceeeccceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVV-YAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVKSGRICK 191 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv-~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk~~k~~K 191 (534)
..+.++|||+|||..+|+++|+++| +.||.|. .+.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+......+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAF-ATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHH-HHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHH-HHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 3567899999999999999999999 9999999 99999998 99999999999999999999999755 5565554444
Q ss_pred eeeec
Q psy3698 192 KLQID 196 (534)
Q Consensus 192 rVeIk 196 (534)
++.|.
T Consensus 85 ~l~v~ 89 (99)
T 2div_A 85 RFKLN 89 (99)
T ss_dssp ECCEE
T ss_pred eEEEe
Confidence 44443
No 56
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3e-14 Score=122.13 Aligned_cols=77 Identities=17% Similarity=0.018 Sum_probs=67.3
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
+....++|||+|||+++|+++|+++|++||.|..+.+++++.++ +++|||||+| +. +|++||.+....+.++.+.|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR-RSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSS-SCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCC-ccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEE
Confidence 34567899999999999999999999999999999999999888 8999999999 55 888888667777777777765
No 57
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.50 E-value=2.6e-14 Score=122.48 Aligned_cols=100 Identities=11% Similarity=0.182 Sum_probs=80.5
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceeccc
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVVPW 99 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVrPw 99 (534)
.+++|||+|||+++|+++|+++|++||.|..+.++++. .++|||||+| +. +|++|++ +.+..+.++.+.+...
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP----ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST----TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC----CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 46899999999999999999999999999999998763 4589999999 55 8888888 4777777777777621
Q ss_pred ccCCCCCCCCCCCCCCCCCceeEeccccCcCCHHHHHHHhhhcCCC
Q psy3698 100 AISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGD 145 (534)
Q Consensus 100 ~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~ 145 (534)
.... . ..+++...++++|.++| ++||-
T Consensus 83 ~~~~---------------~---~~~~~~~~~~~~l~~~~-~~~g~ 109 (115)
T 3lqv_A 83 NANR---------------A---FQKMDTKKKEEQLKLLK-EKYGI 109 (115)
T ss_dssp CHHH---------------H---TTTSCHHHHHHHHHHHH-HHHCC
T ss_pred cCCh---------------h---hhhhhHhHhHHHHHHHH-HHhCC
Confidence 1100 0 15778889999999999 88884
No 58
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.8e-14 Score=119.87 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=68.7
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcccccee
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEV 96 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQV 96 (534)
......++|||+|||+++||++|+++|++||+|..+.+++++.++ ++||||||+| ++ +|++||+.....+.++.+.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG-KSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSC-CCCSEEEEEESSHHHHHHHHTCSSCEETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCC-ccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEE
Confidence 445567999999999999999999999999999999999998888 9999999999 55 89999987555777777777
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 91 ~ 91 (116)
T 2cqd_A 91 N 91 (116)
T ss_dssp E
T ss_pred E
Confidence 6
No 59
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.1e-14 Score=118.39 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=68.3
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQV 96 (534)
+....++|||+|||+++||++|+++|++||+|..+.+++++.++ ++||||||+| ++ +|++||+ +....+.++.+.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTK-APRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSC-SBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCC-CCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34557999999999999999999999999999999999998888 8999999999 55 8888888 4777788888877
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 88 ~ 88 (103)
T 2dnm_A 88 Q 88 (103)
T ss_dssp E
T ss_pred E
Confidence 6
No 60
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.50 E-value=1.8e-14 Score=119.03 Aligned_cols=73 Identities=18% Similarity=0.122 Sum_probs=64.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccC--CeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceecc
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFG--PVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVVP 98 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG--~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVrP 98 (534)
.+|||||||+++||++|+++|++|| .|..+.+++|+.++ ++||||||+| ++ +|++|++ +++..+.++.+.|..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g-~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANG-QSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTC-CEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCC-ccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEE
Confidence 4799999999999999999999999 99999999999888 9999999999 55 8888886 577788888888763
No 61
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=9.2e-14 Score=124.41 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=52.7
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcC----C-------CeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCcee
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLF----G-------DVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEV 184 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~F----G-------~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veI 184 (534)
+.++|||+|||.++|+++|+++| +.| | .|..+.+.. +||||||+|.+.++|.+||+.....+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F-~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFF-NAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHH-HHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHH-HHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 46899999999999999999999 899 6 777777765 68999999999999999993333444
No 62
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.5e-14 Score=120.68 Aligned_cols=79 Identities=19% Similarity=0.198 Sum_probs=69.0
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcccccee
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEV 96 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQV 96 (534)
.+....++|||+|||+++||++|+++|++||+|..+.+++++.++ ++||||||+| ++ +|++||+.....+.++.+.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g-~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTN-QSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSC-CEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCC-CcceEEEEEECCHHHHHHHHHhCCCeECCEEEEE
Confidence 345567999999999999999999999999999999999998888 8999999999 55 89999988666777777777
Q ss_pred cc
Q psy3698 97 VP 98 (534)
Q Consensus 97 rP 98 (534)
..
T Consensus 90 ~~ 91 (105)
T 2dh8_A 90 KP 91 (105)
T ss_dssp CC
T ss_pred EE
Confidence 63
No 63
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=7.2e-14 Score=116.92 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=67.6
Q ss_pred CCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccc
Q psy3698 18 FSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRV 94 (534)
Q Consensus 18 ~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~V 94 (534)
.......++|||+|||+++||++|+++|++||+|..+.+++++ ++ ++||||||+| +. +|++|++. ....+.++.+
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 88 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AG-KPKGLAYVEYENESQASQAVMKMDGMTIKENII 88 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TS-CEEEEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CC-CEEeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3556678999999999999999999999999999999999988 67 8999999999 55 88888865 6667777777
Q ss_pred eec
Q psy3698 95 EVV 97 (534)
Q Consensus 95 QVr 97 (534)
.|.
T Consensus 89 ~v~ 91 (100)
T 2do4_A 89 KVA 91 (100)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 64
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.4e-14 Score=116.66 Aligned_cols=78 Identities=18% Similarity=0.156 Sum_probs=68.2
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
.....++|||+|||+++||++|+++|++||+|..+.+++++.++ +++|||||+| ++ +|++|++. ....+.++.+.|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQ-RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSC-SCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-CcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456899999999999999999999999999999999998887 8999999999 55 88888854 777788888887
Q ss_pred cc
Q psy3698 97 VP 98 (534)
Q Consensus 97 rP 98 (534)
..
T Consensus 87 ~~ 88 (102)
T 1x5s_A 87 DQ 88 (102)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 65
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.6e-14 Score=116.34 Aligned_cols=79 Identities=15% Similarity=0.019 Sum_probs=68.4
Q ss_pred CCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccc
Q psy3698 18 FSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRV 94 (534)
Q Consensus 18 ~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~V 94 (534)
..++...++|||+|||+++|+++|+++|++||+|..+.+++++.++ +++|||||+| +. +|++|++. ....+.++.+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSR-RSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSS-SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCC-CcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3556677999999999999999999999999999999999998887 8999999999 55 88888884 6666777777
Q ss_pred eec
Q psy3698 95 EVV 97 (534)
Q Consensus 95 QVr 97 (534)
.|.
T Consensus 88 ~v~ 90 (95)
T 2cqc_A 88 RVS 90 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 66
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.5e-14 Score=123.46 Aligned_cols=77 Identities=8% Similarity=-0.107 Sum_probs=66.9
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCe-eEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPV-KVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V-~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQ 95 (534)
..+...++|||+|||+++||++|+++|++||.| ..+.+++|+ ++ ++||||||+| ++ +|++||+.....+.++.+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g-~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 87 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NG-QGLGQALVQFKNEDDARKSERLHRKKLNGREAF 87 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TS-SCSSCEEEECSSHHHHHHHGGGCSEEETTEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CC-CcceEEEEEECCHHHHHHHHHhCCCccCCeEEE
Confidence 345567999999999999999999999999999 788899988 77 8999999999 66 9999998866677777776
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 88 v~ 89 (114)
T 2cpy_A 88 VH 89 (114)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 67
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.50 E-value=1.8e-14 Score=120.27 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=58.8
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCC-CeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFG-DVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG-~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
++|||+|||.++|+++|+++| +.|| .|..|+|+.|+ ++.+||||||+|.+.++|.+||+...
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F-~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~ 65 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQL-QSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ 65 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHH-HHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHH-HHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC
Confidence 689999999999999999999 9999 89999999998 89999999999999999999998753
No 68
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.49 E-value=2.3e-14 Score=121.80 Aligned_cols=77 Identities=12% Similarity=0.003 Sum_probs=62.8
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCC--eeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCC----CCc
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGP--VKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATE----GNL 90 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~--V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr----~i~ 90 (534)
....-.+|||+|||+++||++|+++|++||. |..+.+++|+.++ ++||||||+| +. +|++||+. ++. .+.
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg-~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQ-QNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSS-SCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCC-CCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 3345678999999999999999999999996 5678899999988 9999999999 44 88888875 222 356
Q ss_pred cccceec
Q psy3698 91 CGRVEVV 97 (534)
Q Consensus 91 ~k~VQVr 97 (534)
+|.+.|.
T Consensus 84 Gr~i~V~ 90 (95)
T 2lkz_A 84 GKTIGVD 90 (95)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 6666665
No 69
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.5e-14 Score=121.26 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=66.5
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcccccee
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEV 96 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQV 96 (534)
..+...++|||+|||+++||++|+++|++||.| .+.+++|+ ++ ++||||||+| ++ +|++||++....+.++.+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g-~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DG-RVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SS-CEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CC-CEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEE
Confidence 345567899999999999999999999999955 88888887 67 9999999999 55 89999988888888888887
Q ss_pred cc
Q psy3698 97 VP 98 (534)
Q Consensus 97 rP 98 (534)
.+
T Consensus 87 ~~ 88 (102)
T 1wez_A 87 FL 88 (102)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 70
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.3e-13 Score=116.88 Aligned_cols=78 Identities=19% Similarity=0.157 Sum_probs=68.1
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-c------CCCC
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-A------TEGN 89 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-s------sr~i 89 (534)
.++...++|||+|||+++||++|+++|++||+|..+.+++++.++ +++|||||+| +. +|++||+. . ...+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTE-HSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSC-CBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-CCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 345567899999999999999999999999999999999998888 8999999999 55 88888875 4 5677
Q ss_pred ccccceec
Q psy3698 90 LCGRVEVV 97 (534)
Q Consensus 90 ~~k~VQVr 97 (534)
.++.+.|.
T Consensus 89 ~g~~l~v~ 96 (111)
T 1x4h_A 89 DGRQLKVD 96 (111)
T ss_dssp SSCEEEEE
T ss_pred cCEEEEEE
Confidence 77877776
No 71
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.49 E-value=6.3e-14 Score=120.44 Aligned_cols=89 Identities=10% Similarity=0.059 Sum_probs=73.2
Q ss_pred ccCCCCCCC-CCCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-
Q psy3698 8 WEGVLPLRT-QFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ- 83 (534)
Q Consensus 8 WsG~lPPR~-~~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq- 83 (534)
|+..++... ....+..+++|||+|||+++|+++|+++|++||+|..+.+++++.++ +++|||||+| ++ +|++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~F~~~~~A~~Ai~~ 87 (108)
T 2jrs_A 9 SHMAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETG-RSKGYGFITFSDSECAKKALEQ 87 (108)
T ss_dssp SCSSSSSCCSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTT-EEEEEEEEEESCHHHHHHHHHH
T ss_pred hhhccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-ccceEEEEEECCHHHHHHHHHH
Confidence 444443322 34556677899999999999999999999999999999999998887 8999999999 55 8888887
Q ss_pred hcCCCCccccceec
Q psy3698 84 WATEGNLCGRVEVV 97 (534)
Q Consensus 84 ~ssr~i~~k~VQVr 97 (534)
..+..+.++.+.|.
T Consensus 88 l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 88 LNGFELAGRPMKVG 101 (108)
T ss_dssp HTTCCSSSSCCEEE
T ss_pred cCCCEECCEEEEEE
Confidence 47777888888776
No 72
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.2e-14 Score=122.05 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=67.5
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-C---CCCceEEEEEeCCHHHHHHHHHhcC------ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-H---KYPIGSGRITFGSTRAYSDAIRAAF------IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-T---G~pKGfGFVtF~d~EsA~kAIea~~------veIk 185 (534)
...++|||||||..+|+++|+++| ++||.|. +.++.|+ + |++||||||+|.+.++|.+||++.+ +.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F-~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASF-RRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHT-TTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHH-HhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEec
Confidence 346889999999999999999999 9999999 8888887 5 7999999999999999999998762 1111
Q ss_pred c--cceeeeeeecccc
Q psy3698 186 S--GRICKKLQIDPYL 199 (534)
Q Consensus 186 ~--~k~~KrVeIkPyL 199 (534)
. ..-.++++|+|+.
T Consensus 84 ~~~~~~~~~~~v~p~~ 99 (114)
T 2dnl_A 84 SSPTIKDKPVQIRPWN 99 (114)
T ss_dssp CCSSSCSEEEEEECCC
T ss_pred cCCCcCCCeeeccCCc
Confidence 1 1224689999984
No 73
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.49 E-value=2.2e-14 Score=121.34 Aligned_cols=76 Identities=14% Similarity=-0.024 Sum_probs=66.2
Q ss_pred CCccCeEEEeCCCC------CCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCcc
Q psy3698 21 EILSNKIFIGGVPW------DTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLC 91 (534)
Q Consensus 21 p~~SrKVFVGNLP~------diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~ 91 (534)
....++|||+|||+ ++++++|+++|++||+|..+.+++++.|+ ++||||||+| +. +|++||+ +.+..+.+
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg-~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATG-KTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTT-EECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCC-ccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34578999999999 99999999999999999999999999888 9999999999 55 8888886 46667776
Q ss_pred -ccceec
Q psy3698 92 -GRVEVV 97 (534)
Q Consensus 92 -k~VQVr 97 (534)
+.+.|.
T Consensus 82 ~r~l~V~ 88 (100)
T 3ns6_A 82 KHRLFLY 88 (100)
T ss_dssp SCBCEEE
T ss_pred CeEEEEE
Confidence 776665
No 74
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.8e-14 Score=115.01 Aligned_cols=74 Identities=12% Similarity=0.029 Sum_probs=63.0
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
..++|||+|||+++||++|+++|++||+|..+.+++++.++ +++|||||+| +. +|++|++. .+..+.++.+++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTN-KCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSC-SCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-CcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 35899999999999999999999999999999999998888 8999999999 55 88888874 5555665555443
No 75
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.2e-14 Score=119.97 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=63.9
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceeeccc
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVKSGR 188 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk~~k 188 (534)
..++|||||||.++|+++|+++| +.||.|..|.|+.|+.+.+||||||+|.+.++|.+||+.....+....
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F-~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~ 80 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWL-EDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 80 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHH-HTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHH-hhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEE
Confidence 45899999999999999999999 999999999999998899999999999999999999995455555433
No 76
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=8.8e-14 Score=116.97 Aligned_cols=77 Identities=10% Similarity=-0.031 Sum_probs=67.5
Q ss_pred CCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccc
Q psy3698 18 FSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRV 94 (534)
Q Consensus 18 ~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~V 94 (534)
..++...++|||+|||+++|+++|+++|++||+|..+.++++ ++ +++|||||+| +. +|++|++. ....+.++.+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GG-RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SS-SEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CC-CcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 456678899999999999999999999999999999999988 56 8999999999 55 88888874 7777888888
Q ss_pred eec
Q psy3698 95 EVV 97 (534)
Q Consensus 95 QVr 97 (534)
.|.
T Consensus 86 ~V~ 88 (103)
T 2d9p_A 86 YVA 88 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 77
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.49 E-value=5.2e-14 Score=113.78 Aligned_cols=75 Identities=11% Similarity=0.083 Sum_probs=64.6
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
...++|||+|||+++||++|+++|++||+|..+.+++++.++ +++|||||+| +. +|++|++. .+..+.++.+.+.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE-KHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTT-EECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCC-ccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 346899999999999999999999999999999999998877 8999999999 55 88888854 6666766666654
No 78
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.1e-14 Score=118.42 Aligned_cols=78 Identities=14% Similarity=0.012 Sum_probs=68.4
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQ 95 (534)
.+....++|||+|||+++||++|+++|++||+|..+.+++++.++ +++|||||+| ++ +|++||+ +....+.++.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTG-QSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSC-SEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCC-ceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 455667999999999999999999999999999999999998888 8999999999 55 8888888 466677777777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 89 v~ 90 (103)
T 2cq0_A 89 VE 90 (103)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 79
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7.4e-14 Score=115.12 Aligned_cols=76 Identities=9% Similarity=0.163 Sum_probs=64.9
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceec
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVV 97 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVr 97 (534)
+...++|||+|||+++|+++|+++|++||+|..+.+++++.++ +++|||||+| +. +|++|++ +....+.++.+.|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTR-KSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSC-CCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-CcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3455899999999999999999999999999999999998887 8999999999 55 8888886 45566666666654
No 80
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.48 E-value=4.6e-14 Score=114.59 Aligned_cols=74 Identities=9% Similarity=0.023 Sum_probs=64.6
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
..++|||+|||+++|+++|+++|++||+|..+.+++++.++ +++|||||+| +. +|++|++. .+..+.++.+.+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATG-KSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCC-ccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 35799999999999999999999999999999999998887 8999999999 55 88888884 6666777777665
No 81
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.4e-14 Score=117.79 Aligned_cols=76 Identities=13% Similarity=0.052 Sum_probs=67.0
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
....++|||+|||+++|+++|+++|++||+|..+.+++++.++ +++|||||+| ++ +|++|++. .+..+.++.+.|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG-YLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTS-SEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCC-ceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 4456899999999999999999999999999999999998888 9999999999 55 88888874 6777777777775
No 82
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1e-13 Score=114.77 Aligned_cols=74 Identities=22% Similarity=0.137 Sum_probs=65.5
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEE-eecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceec
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVE-WPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVV 97 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v-~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVr 97 (534)
..++|||+|||+++||++|+++|++||+|..+ .+++++.++ +++|||||+| ++ +|++|++ +....+.++.+.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG-NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTC-SCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCC-CcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35899999999999999999999999999988 999998888 8999999999 65 8888888 46666777777776
No 83
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.48 E-value=5.5e-14 Score=120.07 Aligned_cols=77 Identities=18% Similarity=-0.052 Sum_probs=67.2
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCC---eeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcccc
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGP---VKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGR 93 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~---V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~ 93 (534)
.+....++|||||||+++||++|+++|++||. |..+.+++++. + ++||||||+| ++ +|++||++....+.++.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g-~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-G-KRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-S-TTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-C-CEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 45667799999999999999999999999998 88899999887 7 9999999999 66 99999997777777777
Q ss_pred ceec
Q psy3698 94 VEVV 97 (534)
Q Consensus 94 VQVr 97 (534)
+.|.
T Consensus 84 i~V~ 87 (107)
T 2lmi_A 84 VEVY 87 (107)
T ss_dssp CCCE
T ss_pred EEEE
Confidence 6665
No 84
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.48 E-value=7.2e-14 Score=116.29 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=64.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
+++|||||||+++||++|+++|++||.|..+.+++++.++ +++|||||+| +. +|++|++. .+..+.++.+.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTG-RSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTC-CBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCC-ccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4789999999999999999999999999999999998888 8999999999 55 88888864 6667777777765
No 85
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.48 E-value=4.7e-14 Score=124.67 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=71.9
Q ss_pred CCCCCCCCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCC
Q psy3698 12 LPLRTQFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEG 88 (534)
Q Consensus 12 lPPR~~~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~ 88 (534)
.|+.....++...++|||+|||+++||++|+++|++||+|..+.+++++.++ ++||||||+| +. +|++||+. ....
T Consensus 30 ~p~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~ 108 (139)
T 1u6f_A 30 IPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETR-QSRGYGFVKFQSGSSAQQAIAGLNGFN 108 (139)
T ss_dssp CCSSCSSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTT-EEEEEEEEEESSHHHHHHHHHHTTTEE
T ss_pred CCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-CcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3444434666778999999999999999999999999999999999998887 8999999999 55 88888884 6667
Q ss_pred Cccccceec
Q psy3698 89 NLCGRVEVV 97 (534)
Q Consensus 89 i~~k~VQVr 97 (534)
+.++.+.|.
T Consensus 109 ~~g~~l~v~ 117 (139)
T 1u6f_A 109 ILNKRLKVA 117 (139)
T ss_dssp CSSCEEEEE
T ss_pred ECCeEEEEE
Confidence 777777776
No 86
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2e-13 Score=113.96 Aligned_cols=69 Identities=25% Similarity=0.358 Sum_probs=62.8
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
.+.++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.+||||||+|.+.++|.+||+.....+.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~ 77 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYF-KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIM 77 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHH-SSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEEC
Confidence 456899999999999999999999 999999999999997 899999999999999999999985444454
No 87
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8.3e-14 Score=117.12 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=66.3
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcccccee
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEV 96 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQV 96 (534)
......++|||+|||+++|+++|+++|++||+|..+.+++++.++ ++||||||+| +. +|++||+. ...+.++.+.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTG-HSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSC-SEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCC-CccceEEEEECCHHHHHHHHHc-CCeeCCeEEEE
Confidence 344567899999999999999999999999999999999998888 9999999999 55 88999984 44566677766
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 88 ~ 88 (103)
T 2cqg_A 88 K 88 (103)
T ss_dssp E
T ss_pred E
Confidence 5
No 88
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.7e-14 Score=119.17 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=68.3
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCee--------EEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCC
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVK--------VEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATE 87 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~--------~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr 87 (534)
.+....++|||+|||+++|+++|+++|++||.|. .+.+++++.++ ++||||||+| ++ +|++||+. ...
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETG-KPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTC-SBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCC-CeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 4566789999999999999999999999999998 58899998888 9999999999 55 88888874 677
Q ss_pred CCccccceec
Q psy3698 88 GNLCGRVEVV 97 (534)
Q Consensus 88 ~i~~k~VQVr 97 (534)
.+.++.+.|.
T Consensus 89 ~~~g~~l~V~ 98 (113)
T 2cpe_A 89 DFQGSKLKVS 98 (113)
T ss_dssp EETTEECEEE
T ss_pred ccCCCEEEEE
Confidence 7777877776
No 89
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.48 E-value=1.5e-13 Score=115.75 Aligned_cols=77 Identities=17% Similarity=0.109 Sum_probs=65.3
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcc---c
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLC---G 92 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~---k 92 (534)
......++|||+|||+++||++|+++|++||+|..+.+++++ ++ ++||||||+| +. +|++||+. ....+.+ +
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DG-SSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SS-CEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CC-CcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 444567999999999999999999999999999999999987 56 8999999999 55 88888874 5666665 6
Q ss_pred cceec
Q psy3698 93 RVEVV 97 (534)
Q Consensus 93 ~VQVr 97 (534)
.+.|.
T Consensus 88 ~l~V~ 92 (105)
T 2dnh_A 88 SLVVK 92 (105)
T ss_dssp CCEEE
T ss_pred cEEEE
Confidence 77665
No 90
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.48 E-value=9e-14 Score=119.11 Aligned_cols=79 Identities=10% Similarity=-0.001 Sum_probs=69.1
Q ss_pred CCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccc
Q psy3698 18 FSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRV 94 (534)
Q Consensus 18 ~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~V 94 (534)
..+....++|||+|||+++||++|+++|++||.|..+.+++++.++ +++|||||+| ++ +|++||+. ....+.++.+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATG-KSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-CcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4566678999999999999999999999999999999999998877 8999999999 55 88888874 6667777777
Q ss_pred eec
Q psy3698 95 EVV 97 (534)
Q Consensus 95 QVr 97 (534)
.|.
T Consensus 88 ~V~ 90 (115)
T 2dgo_A 88 RTN 90 (115)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 91
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.48 E-value=4.9e-14 Score=118.79 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=63.8
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCC-CCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTP-ESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~-~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQ 95 (534)
......++|||||||+++||++|+++|++|| |..+.+++++ .++ ++||||||+| ++ +|++||++.+..+.++.+.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g-~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPE-RLKGFGYAEFEDLDSLLSALSLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTC-CCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCC-ccCeEEEEEECCHHHHHHHHhcCCCEECCeEEE
Confidence 3456679999999999999999999999999 9999999998 577 8999999999 55 8888887677788888777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 92 V~ 93 (100)
T 2j76_E 92 VD 93 (100)
T ss_dssp CE
T ss_pred EE
Confidence 65
No 92
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.48 E-value=1.4e-13 Score=118.47 Aligned_cols=78 Identities=14% Similarity=0.044 Sum_probs=66.4
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
.+....++|||+|||+++||++|+++|++||+|..+.+++++.++ ++||||||+| +. +|++|++. .+..+.++.+.
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTS-LSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSS-CCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCC-CcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 455567899999999999999999999999999999999998888 9999999999 44 88888874 56666666665
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 114 V~ 115 (118)
T 2khc_A 114 VQ 115 (118)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 93
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.47 E-value=8.8e-14 Score=124.88 Aligned_cols=115 Identities=13% Similarity=0.073 Sum_probs=81.8
Q ss_pred CCCcEEEEEe-hH-HHHHHHhh--cCCCCccccceecccccC-----C-CCCCCCCCCCCCCCCceeEeccccCcCCHHH
Q psy3698 65 APKAISLDVI-SE-LVLILGQW--ATEGNLCGRVEVVPWAIS-----D-SNYSPQGHSTKLEPGKTIFVGALHGRLTAQA 134 (534)
Q Consensus 65 rsRGYAFVtF-sE-sAeaALq~--ssr~i~~k~VQVrPw~ls-----d-s~~~~~~~s~~~d~~ktIFVGNLP~~~Teed 134 (534)
..+|+++|+| +. +|++|++. ++..+.+ .+.+...... . .............+.++|||||||..+|+++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 6789999999 44 77777753 3444444 4433311100 0 0000001222345678999999999999999
Q ss_pred HHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 135 LYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 135 LreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
|+++| +.||.|..|.|..| +||||||+|.+.++|.+||+..+ ..+.
T Consensus 90 l~~~F-~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~ 136 (150)
T 2i2y_A 90 LERAF-GYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLC 136 (150)
T ss_dssp HHHHH-HHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSS
T ss_pred HHHHH-HhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 99999 99999999999986 68999999999999999999754 3443
No 94
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.4e-13 Score=116.15 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=66.2
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCC-CCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceecc
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPES-PTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVVP 98 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~T-g~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVrP 98 (534)
...++|||+|||+++||++|+++|++|| |..+.+++++.+ + +++|||||+| ++ +|++||++....+.++.+.|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g-~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPE-RLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTT-SBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCC-CcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 4468999999999999999999999999 999999999887 6 8999999999 55 8888887677778888887763
No 95
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.47 E-value=8.1e-14 Score=112.17 Aligned_cols=72 Identities=8% Similarity=0.022 Sum_probs=64.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
.+|||+|||+++|+++|+++|++||+|..+.+++++.++ +++|||||+| +. +|++|++. .+..+.++.+.+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG-SSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTC-CEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCC-CccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 689999999999999999999999999999999998888 8999999999 55 88888884 6667777777665
No 96
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.47 E-value=9.3e-14 Score=119.23 Aligned_cols=78 Identities=17% Similarity=0.052 Sum_probs=68.2
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
.+....++|||+|||+++||++|+++|++||+|..+.+++++.++ ++||||||+| +. +|++||+. ....+.++.+.
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-LSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSC-SEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCC-CcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 455567899999999999999999999999999999999998877 8999999999 55 88888855 66777778777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 99 V~ 100 (115)
T 2cpz_A 99 VQ 100 (115)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 97
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.47 E-value=1.3e-13 Score=119.91 Aligned_cols=77 Identities=13% Similarity=0.065 Sum_probs=67.8
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQV 96 (534)
.....++|||+|||+++||++|+++|++||.|..+.+++++.++ .++|||||+| +. +|++||+ +....+.++.+.|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG-YLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTS-SBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-ccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 44557899999999999999999999999999999999998888 8999999999 55 8888886 4777788888777
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 97 ~ 97 (126)
T 3ex7_B 97 D 97 (126)
T ss_dssp E
T ss_pred E
Confidence 6
No 98
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5e-14 Score=123.08 Aligned_cols=78 Identities=9% Similarity=-0.000 Sum_probs=66.1
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcccccee
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEV 96 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQV 96 (534)
......++|||+|||+++||++|+++|++||.|..+.++.+..++ +++|||||+| ++ +|++||++....+.++.+.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g-~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNG-KATGEGFVEFRNEADYKAALCRHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTS-SEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCC-CCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEE
Confidence 344566899999999999999999999999999876666666677 8999999999 55 99999988777788777776
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 99 ~ 99 (124)
T 1wel_A 99 H 99 (124)
T ss_dssp E
T ss_pred E
Confidence 5
No 99
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=7.3e-14 Score=116.43 Aligned_cols=72 Identities=7% Similarity=-0.044 Sum_probs=62.8
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCee-EEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccc
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVK-VEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGR 93 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~-~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~ 93 (534)
...+++|||||||+++||++|+++|++||+|. .+.+++++.++ +++|||||+| +. +|++|++. ....+.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTG-IPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSC-CEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCC-CcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 34578999999999999999999999999999 99999998888 8999999999 55 88888884 555666665
No 100
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7e-14 Score=117.15 Aligned_cols=77 Identities=10% Similarity=0.068 Sum_probs=67.2
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
.....++|||+|||+++||++|+++|++||+|..+.+++++.++ +++|||||+| +. +|++|++. ....+.++.+.|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE-KHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSC-CCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCC-CcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34456899999999999999999999999999999999998888 8999999999 55 88888864 666777777777
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 87 ~ 87 (102)
T 2cqb_A 87 N 87 (102)
T ss_dssp E
T ss_pred E
Confidence 6
No 101
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.47 E-value=1.8e-13 Score=115.22 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=61.7
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.+.++|||+|||..+|+++|+++| +.||.|..+.|..|+++.++|||||+|.+.++|.+||+..+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 77 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLF-QPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 77 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHc
Confidence 457899999999999999999999 99999999999999999999999999999999999999765
No 102
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=3.3e-13 Score=112.43 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=63.1
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLF-SAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 76 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456899999999999999999999 999999999999998 99999999999999999999998765 4443
No 103
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=115.53 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=68.5
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceeeccceeeee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVKSGRICKKL 193 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk~~k~~KrV 193 (534)
..+.++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.+||||||+|.+.++|.+||+.....+.. ++|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g----~~l 87 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYF-SQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDG----RNI 87 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHH-HTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECC----EEE
Confidence 4567899999999999999999999 999999999999997 8999999999999999999999984455543 455
Q ss_pred eeccc
Q psy3698 194 QIDPY 198 (534)
Q Consensus 194 eIkPy 198 (534)
.|+..
T Consensus 88 ~V~~a 92 (105)
T 2dh8_A 88 DPKPC 92 (105)
T ss_dssp BCCCS
T ss_pred EEEEc
Confidence 55544
No 104
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.9e-13 Score=114.92 Aligned_cols=76 Identities=11% Similarity=-0.016 Sum_probs=65.9
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhc-cCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCC-Cccccc
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQ-FGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEG-NLCGRV 94 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~Fsq-FG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~-i~~k~V 94 (534)
++...++|||+|||+++||++|+++|++ ||+|..+.+++++ ++ ++||||||+| +. +|++||+. .... +.++.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g-~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TG-VSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TC-CEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CC-CccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 3445689999999999999999999999 9999999999998 77 8999999999 55 88888884 5556 777777
Q ss_pred eec
Q psy3698 95 EVV 97 (534)
Q Consensus 95 QVr 97 (534)
.|.
T Consensus 83 ~v~ 85 (104)
T 2dhg_A 83 RLS 85 (104)
T ss_dssp CCC
T ss_pred EEE
Confidence 776
No 105
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.46 E-value=2.1e-13 Score=110.63 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=62.0
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 74 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCceEEEEeCCCCCCCHHHHHHHH-HhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456899999999999999999999 999999999999997 99999999999999999999999754 4444
No 106
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.46 E-value=5.3e-14 Score=116.24 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=58.5
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCC--CeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFG--DVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG--~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+|||||||..+|+++|+++| +.|| .|..+.|..|+ +|++||||||+|.+.++|.+||+..+ .++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F-~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~ 71 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAV-HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 71 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHH-HTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS
T ss_pred eEEEEeCCCCCCCHHHHHHHH-HHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 579999999999999999999 9999 99999999998 99999999999999999999998765 3444
No 107
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=1.7e-13 Score=115.38 Aligned_cols=75 Identities=8% Similarity=0.020 Sum_probs=66.6
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
....++|||+|||+++||++|+++|++|| |..+.+++++.++ ++||||||+| ++ +|++||++....+.++.+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g-~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTD-KFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSC-SEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCC-ccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEE
Confidence 34568999999999999999999999997 9999999998888 8999999999 55 888888777777888888776
No 108
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.45 E-value=3.4e-13 Score=119.05 Aligned_cols=78 Identities=9% Similarity=-0.000 Sum_probs=66.1
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeE--EeecCCCCCCCCCCcEEEEEe-hHHHHHHHhh-cCC----CCc
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKV--EWPQGTPESPTAPKAISLDVI-SELVLILGQW-ATE----GNL 90 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~--v~~~rD~~Tg~rsRGYAFVtF-sEsAeaALq~-ssr----~i~ 90 (534)
......++|||||||+++||++|+++|++||.|.. +++++|+.++ ++||||||+| +.+|++|++. .+. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg-~~rG~aFV~f~~~~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQ-LNRGFAFIQLSTIEAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSS-SBCSCEEEECCHHHHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCC-CcceEEEEEECCHHHHHHHHHhcCCCCCccCC
Confidence 34456789999999999999999999999999976 9999999888 9999999999 3366667665 555 788
Q ss_pred cccceec
Q psy3698 91 CGRVEVV 97 (534)
Q Consensus 91 ~k~VQVr 97 (534)
++.+.|.
T Consensus 97 gr~l~V~ 103 (131)
T 2m2b_A 97 GKTINVE 103 (131)
T ss_dssp GCCCCCE
T ss_pred CEEEEEE
Confidence 8888776
No 109
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.45 E-value=2.3e-13 Score=120.92 Aligned_cols=78 Identities=15% Similarity=0.025 Sum_probs=69.0
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
.++...++|||+|||+++||++|+++|++||+|..+.+++++.++ ++||||||+| ++ +|++||+. .+..+.++.+.
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSR-RSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSS-CCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-ccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 455667899999999999999999999999999999999998888 8999999999 55 88888884 77778888877
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 120 V~ 121 (129)
T 2kxn_B 120 VD 121 (129)
T ss_dssp ES
T ss_pred EE
Confidence 76
No 110
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.45 E-value=7.1e-14 Score=126.04 Aligned_cols=69 Identities=14% Similarity=0.059 Sum_probs=57.0
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|.. .++.|. ++.+||||||+|.+.++|.+||+.....+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f-~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~ 79 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAI-SELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVF 79 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHH-HHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeC
Confidence 3567999999999999999999999 88998766 334443 888999999999999999999964334444
No 111
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=6.3e-14 Score=122.25 Aligned_cols=77 Identities=17% Similarity=0.032 Sum_probs=66.2
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCC---eeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcccc
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGP---VKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGR 93 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~---V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~ 93 (534)
.+....++|||+|||+++||++|+++|++||. |..+.+++++. + ++||||||+| ++ +|++||++....+.++.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g-~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-G-RQSGEAFVELESEDDVKLALKKDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-S-CEEEEEEEEBSSHHHHHHHGGGTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-C-CCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 34456789999999999999999999999999 88888888876 6 8999999999 66 99999997777777777
Q ss_pred ceec
Q psy3698 94 VEVV 97 (534)
Q Consensus 94 VQVr 97 (534)
+.|.
T Consensus 90 i~V~ 93 (118)
T 2db1_A 90 IEVF 93 (118)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 112
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.45 E-value=1.5e-13 Score=116.76 Aligned_cols=77 Identities=12% Similarity=0.095 Sum_probs=67.2
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQV 96 (534)
.....++|||+|||+++|+++|+++|++||+|..+.+++++.++ +++|||||+| +. +|++|++ +.+..+.++.+.|
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTG-FSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTS-SBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-CcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 44567899999999999999999999999999999999998888 8999999999 55 8888887 4666777777777
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 101 ~ 101 (110)
T 1oo0_B 101 D 101 (110)
T ss_dssp E
T ss_pred E
Confidence 6
No 113
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.45 E-value=1.7e-13 Score=122.75 Aligned_cols=77 Identities=16% Similarity=0.065 Sum_probs=65.8
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCee--EEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccc
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVK--VEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRV 94 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~--~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~V 94 (534)
.++...++|||||||+++||++|+++|++| .|+ .+.+++|+. + ++||||||+| ++ +|++||+.....+.++.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-G-rsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I 113 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-G-KITGEAFVQFASQELAEKALGKHKERIGHRYI 113 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-S-SSCSEEEEEESSTTHHHHHHTTTTCCBTTBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-C-CCceEEEEEECCHHHHHHHHHHCCCEECCEEE
Confidence 445567899999999999999999999999 566 888999887 7 8999999999 55 999999987777777777
Q ss_pred eecc
Q psy3698 95 EVVP 98 (534)
Q Consensus 95 QVrP 98 (534)
.|.+
T Consensus 114 ~V~~ 117 (126)
T 2hgm_A 114 EVFK 117 (126)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 6653
No 114
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.45 E-value=1.6e-13 Score=117.97 Aligned_cols=69 Identities=23% Similarity=0.318 Sum_probs=62.2
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
...++|||+|||..+|+++|+++| +.||.|..|.|..|+ +|.+||||||+|.+.++|.+||+.....+.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F-~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~ 92 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELD 92 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHH-TTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCC
Confidence 456899999999999999999999 999999999999998 899999999999999999999998765554
No 115
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.5e-13 Score=116.71 Aligned_cols=71 Identities=27% Similarity=0.251 Sum_probs=64.7
Q ss_pred CCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 114 KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 114 ~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
...+.++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.+||||||+|.+.++|.+||+..+..+.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~ 84 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYF-EGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIID 84 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHH-HTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEET
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCC
Confidence 34567899999999999999999999 999999999999997 899999999999999999999998775444
No 116
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.45 E-value=1.2e-13 Score=116.54 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=62.0
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+.++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.+||||||+|.+.++|.+||+..+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLF-EEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH 76 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHH-HHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 4567899999999999999999999 999999999999998 89999999999999999999999765
No 117
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=110.77 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=57.5
Q ss_pred cCeEEEeCCCCCC------CHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccc-c
Q psy3698 24 SNKIFIGGVPWDT------PEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCG-R 93 (534)
Q Consensus 24 SrKVFVGNLP~di------TEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k-~ 93 (534)
+++|||||||+++ |+++|+++|++||+|..+.+++ .++ ++||||||+| +. +|++|++. ++..+.++ .
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g-~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDG-KTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTT-BCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCC-cEeEEEEEEECCHHHHHHHHHHhcCcccCCcee
Confidence 4789999999999 7899999999999999998873 456 8999999999 55 88888874 56666655 4
Q ss_pred ce
Q psy3698 94 VE 95 (534)
Q Consensus 94 VQ 95 (534)
+.
T Consensus 78 l~ 79 (81)
T 2krb_A 78 FR 79 (81)
T ss_dssp CC
T ss_pred EE
Confidence 44
No 118
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.3e-13 Score=111.20 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=64.1
Q ss_pred CCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 114 KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 114 ~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
...+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVF-SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHH-HTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34567899999999999999999999 999999999999998 79999999999999999999999755 4443
No 119
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.45 E-value=5.3e-14 Score=117.93 Aligned_cols=77 Identities=9% Similarity=-0.020 Sum_probs=66.9
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcccccee
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEV 96 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQV 96 (534)
..+...++|||||||+++||++|+++|++||.|.. .++++..++ ++||||||+| +. +|++||++....+.++.+.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g-~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 89 (101)
T 1fj7_A 12 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTG-TNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 89 (101)
T ss_dssp TTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEE-TTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCC-CcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEE
Confidence 44556789999999999999999999999999987 777777777 8999999999 55 89999988777888888877
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 90 ~ 90 (101)
T 1fj7_A 90 E 90 (101)
T ss_dssp E
T ss_pred E
Confidence 6
No 120
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.9e-13 Score=113.75 Aligned_cols=71 Identities=20% Similarity=0.202 Sum_probs=64.4
Q ss_pred CCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 114 KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 114 ~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
...+.++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELF-RPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD 83 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTS-TTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 34567999999999999999999999 999999999999997 89999999999999999999999755 4444
No 121
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=2.8e-13 Score=114.90 Aligned_cols=66 Identities=26% Similarity=0.341 Sum_probs=61.9
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+.++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.++|||||+|.+.++|.+||+..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVL-QQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHH-HTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 3567899999999999999999999 999999999999998 89999999999999999999999864
No 122
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=114.08 Aligned_cols=76 Identities=18% Similarity=0.158 Sum_probs=65.3
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQV 96 (534)
.+...++|||+|||+++|+++|+++|++||+|..+.+++++. + ++||||||+| +. +|++|++ +....+.++.+.|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-G-KPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-CEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-C-CCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 345678999999999999999999999999999999999876 6 8999999999 44 8888888 4666777777766
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 90 ~ 90 (95)
T 2ywk_A 90 S 90 (95)
T ss_dssp E
T ss_pred E
Confidence 5
No 123
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.3e-13 Score=113.56 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=63.8
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELF-LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY 83 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4567899999999999999999999 999999999999998 99999999999999999999999754 4444
No 124
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.44 E-value=1.8e-13 Score=118.48 Aligned_cols=66 Identities=23% Similarity=0.406 Sum_probs=59.0
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+|||||||..+|+++|+++| +.||.|..|+|..|+. .+||||||+|.+.++|.+||+..+ .++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F-~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~ 71 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTF-SAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLN 71 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCEEEECCCCCCCCHHHHHHHH-hccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4679999999999999999999 9999999999999874 389999999999999999998754 4444
No 125
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=112.38 Aligned_cols=75 Identities=12% Similarity=0.085 Sum_probs=65.0
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
.+++|||+|||+++||++|+++|++||+|..+.++++..++.+++|||||+| +. +|++|++. .+..+.++.+.+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEE
Confidence 3589999999999999999999999999999999998876634899999999 55 88888884 7777777777776
No 126
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=127.36 Aligned_cols=74 Identities=20% Similarity=0.181 Sum_probs=65.1
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccC--CeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFG--PVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG--~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
..++|||||||+++||++|+++|++|| +|..+.+++|+.++ ++||||||+| ++ +|++||+. .+..+.++.+.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg-~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANG-QSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTC-CEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCC-ccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 457999999999999999999999999 99999999999888 9999999999 65 89999887 6677777777765
No 127
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=7.4e-14 Score=110.88 Aligned_cols=67 Identities=24% Similarity=0.303 Sum_probs=61.9
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceeec
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVKS 186 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk~ 186 (534)
.+|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+..+..
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g 68 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDS 68 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHH-TTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCC
Confidence 379999999999999999999 999999999999997 8999999999999999999999987755543
No 128
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.1e-13 Score=115.24 Aligned_cols=75 Identities=17% Similarity=0.053 Sum_probs=64.7
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCC---CCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPE---SPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~---Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
..++|||+|||+++||++|+++|++||+|..+.+++++. ++ +++|||||+| +. +|++|++. ....+.++.+.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVL-LSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCE-EEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCc-CcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 357899999999999999999999999999999998776 55 7899999999 55 88888885 667777787777
Q ss_pred cc
Q psy3698 97 VP 98 (534)
Q Consensus 97 rP 98 (534)
..
T Consensus 83 ~~ 84 (98)
T 2cpf_A 83 RI 84 (98)
T ss_dssp EC
T ss_pred EE
Confidence 63
No 129
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.44 E-value=3.7e-14 Score=120.57 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=59.3
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCC--eEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGD--VVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~--Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.-.||||+|||+.+|+++|+++| ++||. |..|+|.+|+ +|++||||||+|.+.++|.+||+..+
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F-~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ln 74 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTAL-SPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQ 74 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHS-TTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHH
T ss_pred ccCEEEEeCCCCcCCHHHHHHHH-HhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhc
Confidence 34789999999999999999999 99995 6789999998 89999999999999999999999864
No 130
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=8e-14 Score=116.00 Aligned_cols=77 Identities=12% Similarity=0.006 Sum_probs=64.9
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
.....++|||+|||+++||++|+++|++||.|..+.+++++.++ ++||||||+| ++ +|++|++. ....+.++.+.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKG-MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSS-CEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCC-CeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34455899999999999999999999999999877778887777 8999999999 55 88888864 556777777776
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 90 ~ 90 (98)
T 2cqp_A 90 V 90 (98)
T ss_dssp E
T ss_pred E
Confidence 5
No 131
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.9e-13 Score=110.88 Aligned_cols=65 Identities=23% Similarity=0.276 Sum_probs=60.7
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLC-QPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK 68 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTS-TTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhc
Confidence 356899999999999999999999 999999999999997 89999999999999999999998644
No 132
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.5e-13 Score=110.63 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=62.6
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIF-EPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA 73 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 346899999999999999999999 999999999999998 89999999999999999999999754 4443
No 133
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.5e-13 Score=110.42 Aligned_cols=70 Identities=26% Similarity=0.314 Sum_probs=63.3
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+++++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIF-SKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHT-TTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 3557899999999999999999999 999999999999998 79999999999999999999998755 3443
No 134
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.44 E-value=3.1e-13 Score=112.42 Aligned_cols=68 Identities=16% Similarity=0.279 Sum_probs=62.1
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
+.++|||+|||..+++++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 70 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLC-SNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG 70 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCCCCCHHHHHHHH-HhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 35799999999999999999999 999999999999997 89999999999999999999998755 4444
No 135
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.44 E-value=4.1e-13 Score=108.00 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=60.9
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 69 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 69 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred eEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC
Confidence 689999999999999999999 999999999999996 89999999999999999999999754 4443
No 136
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.44 E-value=2.4e-13 Score=109.85 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=62.4
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+.++|||+|||..+++++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 75 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 75 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHH-GGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHH-hccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456899999999999999999999 999999999999996 89999999999999999999998754 4443
No 137
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=4e-13 Score=113.24 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=63.6
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecC-C-CCCCceEEEEEeCCHHHHHHHHHhc--Cceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTD-K-HKYPIGSGRITFGSTRAYSDAIRAA--FIEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~D-k-TG~pKGfGFVtF~d~EsA~kAIea~--~veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..|.|..| + ++.++|||||+|.+.++|.+||+.. ...+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELF-STFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHH-HTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHH-HccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 3557899999999999999999999 99999999999999 4 9999999999999999999999986 35554
No 138
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.6e-13 Score=113.17 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=61.4
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhc-CCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDL-FGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~-FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.+..+|||+|||..+|+++|+++| +. ||.|..|.|..|+++.++|||||+|.+.++|.+||+..+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 72 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFF-VKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQ 72 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHH-HHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHcc
Confidence 456899999999999999999999 88 999999999999999999999999999999999999765
No 139
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.3e-13 Score=111.72 Aligned_cols=77 Identities=12% Similarity=0.056 Sum_probs=66.2
Q ss_pred CCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccc
Q psy3698 18 FSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRV 94 (534)
Q Consensus 18 ~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~V 94 (534)
...+...++|||+|||+++||++|+++|++||+|..+.++++.. .++|||||+| +. +|++|++. ....+.++.+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER---GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT---TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 35566779999999999999999999999999999999998865 4799999999 55 88888874 6677778887
Q ss_pred eec
Q psy3698 95 EVV 97 (534)
Q Consensus 95 QVr 97 (534)
.|.
T Consensus 86 ~v~ 88 (103)
T 2cq3_A 86 EVN 88 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 140
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.43 E-value=3.8e-13 Score=118.01 Aligned_cols=78 Identities=10% Similarity=0.084 Sum_probs=66.4
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
......++|||+|||+++|+++|+++|++||+|..+.+++++.++ ++||||||+| +. +|++|++. .+..+.++.+.
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE-KHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTC-CCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCC-CcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 455667999999999999999999999999999999999998888 9999999999 55 88888864 55556666655
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 137 v~ 138 (140)
T 2ku7_A 137 VN 138 (140)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 141
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=5.4e-13 Score=111.54 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=63.0
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+.++|||+|||..+|+++|+++| +.||.|..+.|..|+++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEIC-KAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK 84 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456889999999999999999999 99999999999999999999999999999999999998755 4443
No 142
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.5e-13 Score=117.86 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=66.8
Q ss_pred CCCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccc
Q psy3698 17 QFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGR 93 (534)
Q Consensus 17 ~~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~ 93 (534)
........++|||||||+++||++|+++|++||+|..+.++++.. .+||||||+| ++ +|++|++. .+..+.++.
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER---GSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT---BCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC---CCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 356777889999999999999999999999999999999998854 5899999999 44 88888874 666777777
Q ss_pred ceec
Q psy3698 94 VEVV 97 (534)
Q Consensus 94 VQVr 97 (534)
+.|.
T Consensus 99 l~V~ 102 (109)
T 2err_A 99 IEVN 102 (109)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 7775
No 143
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=8.7e-14 Score=116.71 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=66.0
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceec
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVV 97 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVr 97 (534)
...++|||+|||+++|+++|+++|++||+|..+.+++++.++ +++|||||+| +. +|++|++ +.+..+.++.+.|.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETG-KPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTT-EEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCC-ccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 456899999999999999999999999999999999998877 8999999999 55 8888887 46677777777775
No 144
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.43 E-value=1.5e-13 Score=119.28 Aligned_cols=75 Identities=16% Similarity=0.080 Sum_probs=67.0
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
...++|||+|||+++||++|+++|++||+|..+.+++++.++ +++|||||+| ++ +|++||++.+..+.++.+.|.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSG-HPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVL 110 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTS-SCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-CcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 346899999999999999999999999999999999998888 8999999999 55 888888767777888888776
No 145
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.43 E-value=6.4e-14 Score=110.96 Aligned_cols=66 Identities=21% Similarity=0.278 Sum_probs=60.7
Q ss_pred eeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceeec
Q psy3698 120 TIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVKS 186 (534)
Q Consensus 120 tIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk~ 186 (534)
+|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+.....+..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g 67 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYF-GGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGL 67 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHH-HHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTT
T ss_pred CEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECC
Confidence 69999999999999999999 999999999999997 8999999999999999999999875555543
No 146
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.4e-13 Score=114.26 Aligned_cols=71 Identities=25% Similarity=0.247 Sum_probs=63.9
Q ss_pred CCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 114 KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 114 ~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
...+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVF-EKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD 81 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34567999999999999999999999 999999999999998 79999999999999999999999754 3443
No 147
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.6e-13 Score=115.31 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=62.1
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEE-EEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVY-AGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~-V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
....+|||+|||+.+|+++|+++| +.||.|.. +.|..|.++++||||||+|.+.++|.+||+.....+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F-~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFF-SGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIG 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHT-TTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhC
Confidence 456899999999999999999999 99999997 8898989999999999999999999999998434443
No 148
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.43 E-value=6.1e-13 Score=113.89 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=63.7
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4567999999999999999999999 999999999999997 99999999999999999999998755 4444
No 149
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.6e-13 Score=118.38 Aligned_cols=79 Identities=6% Similarity=0.018 Sum_probs=67.4
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCe-EEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceeeccceeeee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDV-VYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVKSGRICKKL 193 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~V-v~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk~~k~~KrV 193 (534)
..+.++|||+|||..+|+++|+++| +.||.| ..|.|+.|+++++||||||+|.+.++|.+||+.....+.. ++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g----r~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFL-EGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNG----REA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHT-TTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETT----EEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHH-HhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCC----eEE
Confidence 3456899999999999999999999 999999 8899999999999999999999999999999884455543 345
Q ss_pred eeccc
Q psy3698 194 QIDPY 198 (534)
Q Consensus 194 eIkPy 198 (534)
.|.+.
T Consensus 87 ~v~~a 91 (114)
T 2cpy_A 87 FVHVV 91 (114)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 55443
No 150
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.43 E-value=3.5e-13 Score=111.24 Aligned_cols=70 Identities=27% Similarity=0.362 Sum_probs=63.5
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+++++|+++| +.||.|..+.|..|+++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELF-LQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY 83 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHH-HhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3456899999999999999999999 99999999999999989999999999999999999999754 4444
No 151
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5.2e-13 Score=112.25 Aligned_cols=64 Identities=19% Similarity=0.260 Sum_probs=60.4
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea 179 (534)
..+.++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.+||||||+|.+.++|.+||+.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYF-STFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHH-GGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHH-HhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 3456899999999999999999999 999999999999997 899999999999999999999995
No 152
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.43 E-value=5.5e-13 Score=112.57 Aligned_cols=71 Identities=15% Similarity=0.304 Sum_probs=64.5
Q ss_pred CCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 114 KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 114 ~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
...+..+|||+|||..+|+++|+++| +.||.|..+.|..|+++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELF-AEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD 96 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34567999999999999999999999 89999999999999999999999999999999999999754 4444
No 153
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.43 E-value=7.3e-14 Score=115.39 Aligned_cols=73 Identities=11% Similarity=0.014 Sum_probs=63.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
.++|||+|||+++||++|+++|++||.|..+.+++++.++ ++||||||+| ++ +|++||+. ....+.++.+.|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKG-MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTS-CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCC-CEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 4889999999999999999999999999888888888877 8999999999 55 88888874 6777777777765
No 154
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=119.73 Aligned_cols=73 Identities=14% Similarity=-0.032 Sum_probs=63.9
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
...++|||+|||+++||++|+++|++| .|..+.+++|+. + ++||||||+| ++ +|++||++....+.++.+.|.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g-~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-G-RNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVS 88 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-C-CCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-C-CCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 345799999999999999999999999 899999999876 6 8999999999 65 899999877777777777665
No 155
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.42 E-value=9.6e-14 Score=125.54 Aligned_cols=76 Identities=16% Similarity=0.011 Sum_probs=65.5
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCC---eeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccc
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGP---VKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRV 94 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~---V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~V 94 (534)
++...++|||||||+++||++|+++|++||. |..+.+++|+. + ++||||||+| ++ +|++||++....+.++.+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g-~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-G-RQSGEAFVELGSEDDVKMALKKDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-S-CEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-C-CCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence 3455789999999999999999999999999 78888998877 7 9999999999 66 999999876667777766
Q ss_pred eec
Q psy3698 95 EVV 97 (534)
Q Consensus 95 QVr 97 (534)
.|.
T Consensus 118 ~V~ 120 (136)
T 2hgl_A 118 EVF 120 (136)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 156
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.42 E-value=7.9e-14 Score=117.06 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=64.4
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
+..+++|||||||+++|+++|+++|++||.|..+.+++++ ++ ++||||||+| +. +|++|++ ....+.++.+.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g-~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TG-VSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLG 81 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TS-CEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CC-CccceEEEEECCHHHHHHHHh-CCCeECCEEEEEE
Confidence 3457899999999999999999999999999999999998 77 8999999999 55 8899998 6666777766654
No 157
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.42 E-value=1.2e-13 Score=116.70 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=61.7
Q ss_pred CceeEeccccC------cCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 118 GKTIFVGALHG------RLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 118 ~ktIFVGNLP~------~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.++|||+|||. .+++++|+++| +.||.|..|.|+.|+ ++++||||||+|.+.++|.+||+..+ ..+.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F-~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLF-SKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHH-HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHH-HhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 57899999999 99999999999 999999999999998 79999999999999999999998755 4443
No 158
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.7e-13 Score=113.52 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=63.4
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHH-TTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHh-hccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4567899999999999999999999 999999999999997 89999999999999999999998754 4444
No 159
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=6.2e-13 Score=112.08 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=63.2
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 91 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKF-AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 91 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-hccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 3456899999999999999999999 999999999999998 89999999999999999999999754 4444
No 160
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.42 E-value=3.6e-13 Score=109.67 Aligned_cols=67 Identities=22% Similarity=0.238 Sum_probs=60.3
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||......+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~ 73 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHF-HGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFR 73 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHH-GGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEEC
Confidence 4789999999999999999999 999999999999997 999999999999999999999933334444
No 161
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.5e-13 Score=113.46 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=64.5
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCC-eeEEeec-CCCCCCCCCCcEEEEEe-hH-HHHHHHhhc---CCCCccccce
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGP-VKVEWPQ-GTPESPTAPKAISLDVI-SE-LVLILGQWA---TEGNLCGRVE 95 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~-V~~v~~~-rD~~Tg~rsRGYAFVtF-sE-sAeaALq~s---sr~i~~k~VQ 95 (534)
..++|||||||+++|+++|+++|++||. |..+.++ +++.++ ++||||||+| +. +|++|++.. ...+.++.+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g-~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKM-KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTT-TTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCC-CcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 4689999999999999999999999998 9999888 788877 8999999999 55 888888863 3677788877
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 86 V~ 87 (109)
T 2dis_A 86 VD 87 (109)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 162
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=8e-13 Score=112.81 Aligned_cols=70 Identities=29% Similarity=0.263 Sum_probs=63.5
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..|.|..|+++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f-~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVF-SMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF 82 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 3457899999999999999999999 99999999999999999999999999999999999999754 4443
No 163
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.42 E-value=6.7e-13 Score=111.00 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=63.0
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEE--------EEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-cee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVY--------AGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEV 184 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~--------V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veI 184 (534)
..+..+|||+|||..+|+++|+++| +.||.|.. +.|..|+ ++++||||||+|.+.++|.+||+..+ .++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYF-KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHH-TTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3457899999999999999999999 99999999 9999997 89999999999999999999998754 444
Q ss_pred e
Q psy3698 185 K 185 (534)
Q Consensus 185 k 185 (534)
.
T Consensus 89 ~ 89 (99)
T 2la6_A 89 S 89 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 164
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.8e-13 Score=112.06 Aligned_cols=66 Identities=24% Similarity=0.307 Sum_probs=61.7
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVF-SKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 75 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHH-HHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 4567899999999999999999999 999999999999997 89999999999999999999998755
No 165
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2.9e-13 Score=111.32 Aligned_cols=76 Identities=11% Similarity=0.010 Sum_probs=65.9
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
.+...++|||+|||+++||++|+++|++| .|..+.++++ .++ +++|||||+| ++ +|++||++....+.++.+.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g-~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHG-NKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTS-CEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCC-CCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEE
Confidence 34456999999999999999999999999 9999999998 667 8999999999 55 899999877777888887776
Q ss_pred c
Q psy3698 98 P 98 (534)
Q Consensus 98 P 98 (534)
.
T Consensus 83 ~ 83 (91)
T 2dgw_A 83 R 83 (91)
T ss_dssp E
T ss_pred E
Confidence 3
No 166
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.3e-13 Score=112.18 Aligned_cols=76 Identities=20% Similarity=0.202 Sum_probs=64.9
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQ 95 (534)
.+....++|||+|||+++||++|+++|++||+|..+.+++++. .+||||||+| ++ +|++|++ +....+.++.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT---SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC---SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC---CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 3445679999999999999999999999999999999999865 4689999999 55 8888887 466677777777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 87 V~ 88 (103)
T 2cqi_A 87 VN 88 (103)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 167
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.41 E-value=7.5e-13 Score=115.21 Aligned_cols=77 Identities=9% Similarity=0.041 Sum_probs=66.8
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQ 95 (534)
......++|||+|||+++||++|+++|++||+|..+.+++++ ++ ++||||||+| ++ +|++|++ ..+..+.++.+.
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SG-RSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SS-SCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CC-CEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 344566899999999999999999999999999999999998 77 8999999999 65 8888888 466677777777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 108 V~ 109 (124)
T 2kt5_A 108 IQ 109 (124)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 168
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.41 E-value=6.2e-13 Score=109.15 Aligned_cols=73 Identities=15% Similarity=0.076 Sum_probs=62.9
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
...++|||+|||+++|+++|+++|++||+|..+.++++ ++ ++||||||+| +. +|++|++. ....+.++.+.|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g-~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NG-KSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SS-CEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CC-CcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34689999999999999999999999999999998875 45 8899999999 55 88888874 6777777777776
No 169
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=6.8e-13 Score=111.73 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=61.7
Q ss_pred CCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 114 KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 114 ~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
...+.++|||+|||..+|+++|+++| +.|| |..|.|..|+ ++.++|||||+|.+.++|.+||+.....+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~ 81 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIF-KDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLG 81 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHT-TTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEET
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHH-HhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeEC
Confidence 34567999999999999999999999 8997 9999999998 899999999999999999999933335554
No 170
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.41 E-value=1e-13 Score=146.76 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=63.8
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+..+|||+|||..+|+++|+++| +.||.|+.|.|+.|+ ++.++|||||+|.+.++|.+||+.++ ..|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~ 170 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREF-EVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID 170 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC
Confidence 3566899999999999999999999 999999999999997 99999999999999999999998865 4444
No 171
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.41 E-value=1.8e-13 Score=108.53 Aligned_cols=65 Identities=29% Similarity=0.354 Sum_probs=59.1
Q ss_pred eeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 120 TIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 120 tIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
+|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+.....+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~ 66 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYF-EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEIN 66 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHH-HTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSS
T ss_pred CEEEecCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEEC
Confidence 59999999999999999999 999999999999998 899999999999999999999974344443
No 172
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.41 E-value=3.2e-13 Score=114.05 Aligned_cols=76 Identities=9% Similarity=0.011 Sum_probs=65.2
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
.....++|||+|||+++||++|+++|++||+|..+.++++. ++ +++|||||+| +. +|++|++. ....+.++.+.|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SG-RSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TS-CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CC-CcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34456899999999999999999999999999999999988 67 8999999999 55 88888884 666777777666
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 103 ~ 103 (107)
T 3ulh_A 103 Q 103 (107)
T ss_dssp E
T ss_pred E
Confidence 4
No 173
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=7.5e-13 Score=111.25 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=62.4
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..+.|..| ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAF-SPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 81 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTT-TTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 3467899999999999999999999 99999999999998 89999999999999999999999754 3443
No 174
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.41 E-value=4.7e-13 Score=114.84 Aligned_cols=69 Identities=22% Similarity=0.313 Sum_probs=62.9
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+.++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.+||||||+|.+.++|.+||+..+ ..+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 93 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMF-MPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG 93 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHH-GGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456899999999999999999999 999999999999998 99999999999999999999998754 4444
No 175
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.41 E-value=2.3e-13 Score=123.66 Aligned_cols=76 Identities=9% Similarity=0.047 Sum_probs=64.3
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
.+...++|||+|||+++||++|+++|++|| |+.+.|++|+. + ++||||||+| ++ +|++||++....+.++.+.|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g-~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-G-RVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-S-CSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-C-CCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEE
Confidence 445678999999999999999999999999 66889999876 6 9999999999 55 899999777778888877775
Q ss_pred c
Q psy3698 98 P 98 (534)
Q Consensus 98 P 98 (534)
.
T Consensus 119 ~ 119 (139)
T 2hgn_A 119 L 119 (139)
T ss_dssp E
T ss_pred E
Confidence 3
No 176
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.41 E-value=1.3e-12 Score=127.22 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=56.1
Q ss_pred CCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 114 KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 114 ~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
......+|||+|||.++|+++|+++| +.||.|..|.|.. +||||||+|.+.++|.+||+..+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~ 79 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLF-ERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELD 79 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHT-GGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcC
Confidence 34556899999999999999999999 9999999999976 58999999999999999998654
No 177
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.1e-13 Score=114.58 Aligned_cols=77 Identities=13% Similarity=0.051 Sum_probs=65.7
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQ 95 (534)
......++|||+|||+++|+++|+++|++||+|..+.+++++. + +++|||||+| ++ +|++|++ +....+.++.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-G-KSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-C-SEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-CeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3444578999999999999999999999999999999999874 6 8999999999 55 8888887 466777777777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 88 v~ 89 (114)
T 2do0_A 88 VK 89 (114)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 178
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4e-13 Score=114.69 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=60.1
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
...++|||+|||+++|+++|+++| +.||. +.|.|+.|+++++||||||+|.+.++|.+||+.....+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F-~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~ 80 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFF-SPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQ 80 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSS-CSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeEC
Confidence 456899999999999999999999 99995 499999999999999999999999999999965333443
No 179
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.40 E-value=1.7e-13 Score=112.37 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=62.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hHHHHHHHhh-cCCCCccccceec
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SELVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sEsAeaALq~-ssr~i~~k~VQVr 97 (534)
++|||||||+++||++|+++|++||+|..+.+++++.++ +++|||||+| +++|++|++. .+..+.++.+.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~a~~a~~~l~g~~~~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETK-KPKGFGFVEMQEESVSEAIAKLDNTDFMGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSC-CCCEEEEEEECTTHHHHHHHTSCSSCCSSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCC-CcceEEEEEECCHHHHHHHHHhCCCEECCeEEEEE
Confidence 689999999999999999999999999999999998888 9999999999 3336667764 6777888877776
No 180
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.40 E-value=6.9e-13 Score=112.86 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=63.6
Q ss_pred CCCCccCeEEEeCCCCCC------CHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCC
Q psy3698 19 SDEILSNKIFIGGVPWDT------PEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGN 89 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~di------TEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i 89 (534)
.....+++|||||||+++ |+++|+++|++||+|..+.+++ .++ ++||||||+| +. +|++|++. .+..+
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g-~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDG-KTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTT-BSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCC-CeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 345567899999999999 7899999999999999998883 556 8999999999 55 88888885 66777
Q ss_pred ccc-cceec
Q psy3698 90 LCG-RVEVV 97 (534)
Q Consensus 90 ~~k-~VQVr 97 (534)
.++ .+.|.
T Consensus 87 ~g~~~l~V~ 95 (105)
T 2nlw_A 87 DKQHTFRVN 95 (105)
T ss_dssp STTCEEEEE
T ss_pred CCCceEEEE
Confidence 777 77765
No 181
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=122.40 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=61.3
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCe----eEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccce
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPV----KVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVE 95 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V----~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQ 95 (534)
...++|||+|||+++||++|+++|++||+| ..+.++++. ++ ++||||||+| ++ +|++||+.....|.++.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~g-r~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DG-RPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TS-CEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CC-CEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 346899999999999999999999999986 577788774 67 8999999999 66 9999998766666666555
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 99 V~ 100 (123)
T 2dha_A 99 LF 100 (123)
T ss_dssp CE
T ss_pred EE
Confidence 43
No 182
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.40 E-value=7.5e-13 Score=119.13 Aligned_cols=78 Identities=10% Similarity=-0.008 Sum_probs=68.4
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
......++|||||||+++||++|+++|++||+|..+.+++|+.++ ++||||||+| ++ +|++||+. .+..+.++.+.
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTK-ESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCT-TSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC-ccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 344557899999999999999999999999999999999998888 9999999999 55 88888874 66777888887
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 144 v~ 145 (158)
T 2kn4_A 144 VQ 145 (158)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 183
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.1e-13 Score=115.35 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=66.9
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceeeccceeeeee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVKSGRICKKLQ 194 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk~~k~~KrVe 194 (534)
...++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.++|||||+|.+.++|.+||+.....+. .+++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~----g~~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYY-EQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSID----GRVVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHH-TSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEEC----CEEEE
Confidence 345899999999999999999999 999999999999997 899999999999999999999988445554 24555
Q ss_pred eccc
Q psy3698 195 IDPY 198 (534)
Q Consensus 195 IkPy 198 (534)
|+..
T Consensus 100 V~~a 103 (116)
T 1x4b_A 100 PKRA 103 (116)
T ss_dssp EECC
T ss_pred EEEC
Confidence 5543
No 184
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.40 E-value=6.1e-13 Score=114.40 Aligned_cols=70 Identities=24% Similarity=0.272 Sum_probs=63.3
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.+||||||+|.+.++|.+||+..+ .++.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 108 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTF-LPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG 108 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHT-TTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3456899999999999999999999 999999999999997 89999999999999999999999754 4443
No 185
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.3e-12 Score=111.78 Aligned_cols=65 Identities=22% Similarity=0.261 Sum_probs=61.3
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
....+|||+|||..+|+++|+++| +.||.|..+.|..|+++.+||||||+|.+.++|.+||+..+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 87 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENML-KPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN 87 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTT-TTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 456899999999999999999999 99999999999999999999999999999999999999754
No 186
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=8.5e-13 Score=111.32 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=61.0
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-C-CCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-H-KYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-T-G~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.|| |..|.|..|+ + +.++|||||+|.+.++|.+||......+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~ 82 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFF-RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLG 82 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHT-TTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEET
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHH-HHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeC
Confidence 3567999999999999999999999 9999 9999999998 5 99999999999999999999933334444
No 187
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.40 E-value=7.7e-13 Score=115.01 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=63.0
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
+..++|||+|||..+|+++|+++| +.||.|..|.|..|+++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 74 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVF-GKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH 74 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHH-HTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456899999999999999999999 99999999999999999999999999999999999999754 3443
No 188
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=7.2e-13 Score=113.28 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=60.4
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCc
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNL 90 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~ 90 (534)
......++|||+|||+++|+++|+++|++||+|..+.+++++ ++ ++||||||+| +. +|++|++. ++..+.
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g-~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SG-TSRGVGFARMESTEKCEAVIGHFNGKFIK 92 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SS-CEEEEEEEEESCHHHHHHHHHHHBTCCCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CC-CcceEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 445667999999999999999999999999999999999998 67 8999999999 55 88888874 555554
No 189
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5.3e-13 Score=116.23 Aligned_cols=76 Identities=12% Similarity=0.102 Sum_probs=64.2
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceeeccceeeeeeec
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVKSGRICKKLQID 196 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk~~k~~KrVeIk 196 (534)
...+|||+|||+++|+++|+++| +.| .|..|.|+.|+.|++||||||+|.++++|.+||+....++.. +.|+|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F-~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g----r~i~V~ 88 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFF-HGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQ----RYVEVS 88 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHT-TTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETT----EEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHh-ccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECC----eEEEEE
Confidence 35799999999999999999999 889 899999999999999999999999999999999654444442 345555
Q ss_pred cc
Q psy3698 197 PY 198 (534)
Q Consensus 197 Py 198 (534)
+.
T Consensus 89 ~a 90 (109)
T 2dnn_A 89 PA 90 (109)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 190
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.8e-13 Score=110.62 Aligned_cols=68 Identities=26% Similarity=0.332 Sum_probs=62.0
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEE-EEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYA-GIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V-~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
+.++|||+|||..+|+++|+++| +.||.|..+ .|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTF-SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC 74 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHH-HTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46899999999999999999999 999999999 999996 99999999999999999999999655 4443
No 191
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.40 E-value=1.3e-12 Score=107.17 Aligned_cols=68 Identities=25% Similarity=0.319 Sum_probs=61.1
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+.++|||+|||..+|+++|+++| +.||.|..+.|..+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 74 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKF-NECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLS 74 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHH-HTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456899999999999999999999 99999999999884 78899999999999999999999754 3443
No 192
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.39 E-value=5.2e-13 Score=120.56 Aligned_cols=78 Identities=12% Similarity=-0.020 Sum_probs=67.9
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
......++|||+|||+++||++|+++|++||+|..+.+++++.++ .++|||||+| ++ +|++||+. ....+.++.+.
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKK-TACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-ccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 334567899999999999999999999999999999999998888 8999999999 55 88888884 66777777777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 113 V~ 114 (156)
T 1h2v_Z 113 TD 114 (156)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 193
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.39 E-value=7.5e-13 Score=121.64 Aligned_cols=68 Identities=18% Similarity=0.234 Sum_probs=61.9
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCC--CeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFG--DVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG--~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
...+|||||||..+|+++|+++| +.|| .|..|.|+.|+ +|++||||||+|.+.++|.+||+..+ .++.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F-~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVI-RSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHH-HHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45899999999999999999999 9999 99999999997 99999999999999999999999955 5554
No 194
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.39 E-value=1.1e-12 Score=111.54 Aligned_cols=70 Identities=14% Similarity=0.249 Sum_probs=63.3
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKF-CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHH-GGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3456899999999999999999999 999999999999997 89999999999999999999999754 4443
No 195
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.39 E-value=1.2e-12 Score=114.79 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=62.4
Q ss_pred CCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 114 KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 114 ~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
...+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.+||||||+|.+.++|.+||+..+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 126 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 126 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHH-GGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHH-HhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 34567999999999999999999999 999999999999997 89999999999999999999998765
No 196
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=4e-13 Score=111.72 Aligned_cols=69 Identities=10% Similarity=0.037 Sum_probs=62.2
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
...++|||+|||..+|+++|+++| +.||.|..+.++.++ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F-~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHT-TTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 456899999999999999999999 999999988888876 89999999999999999999998766 4554
No 197
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.39 E-value=2.4e-13 Score=121.55 Aligned_cols=68 Identities=25% Similarity=0.258 Sum_probs=62.5
Q ss_pred CCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 113 TKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 113 ~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
....+.++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.+||||||+|.+.++|.+||+..+
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~ 110 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVF-EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD 110 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHH-GGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 344567899999999999999999999 999999999999997 89999999999999999999998754
No 198
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.39 E-value=7.7e-13 Score=125.00 Aligned_cols=70 Identities=20% Similarity=0.336 Sum_probs=62.1
Q ss_pred CCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCcee
Q psy3698 114 KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEV 184 (534)
Q Consensus 114 ~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veI 184 (534)
+..+..+|||||||.++|+++|+++| +.||.|+.|.|++|+ +++++|||||+|.+.++|.+||+..+...
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~ 81 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKF-SPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV 81 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHH-HhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh
Confidence 34567899999999999999999999 999999999999998 89999999999999999999999876433
No 199
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.39 E-value=4.1e-13 Score=130.35 Aligned_cols=74 Identities=16% Similarity=0.076 Sum_probs=64.5
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccC--CeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFG--PVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG--~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
..++|||||||+++||++|+++|++|| +|..+.|++|+.++ ++||||||+| ++ +|++||+. ....+.++.+.|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg-~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANG-QSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTC-CEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCC-ccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 567899999999999999999999999 99999999999888 9999999999 55 89999984 6667777777665
No 200
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5e-13 Score=116.69 Aligned_cols=72 Identities=17% Similarity=0.093 Sum_probs=59.6
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-c--CCCCcccc
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-A--TEGNLCGR 93 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-s--sr~i~~k~ 93 (534)
..+...++|||||||+++||++|+++|++||+|..++++++ ||||||+| ++ +|++|++. . ...+.++.
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34556789999999999999999999999999999999874 68999999 55 88888874 2 34567777
Q ss_pred ceec
Q psy3698 94 VEVV 97 (534)
Q Consensus 94 VQVr 97 (534)
+.|.
T Consensus 84 l~V~ 87 (105)
T 1sjq_A 84 IYIQ 87 (105)
T ss_dssp CCBC
T ss_pred EEEE
Confidence 7665
No 201
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.39 E-value=8.5e-13 Score=116.58 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=63.4
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
....++|||+|||..+|+++|+++| +.||.|+.|.|..|+ ++++||||||+|.+.++|.+||+..+ ..+.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 110 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLF-ERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHH-HHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3456899999999999999999999 999999999999998 89999999999999999999999755 3444
No 202
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.9e-12 Score=108.76 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=61.7
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..|.|..|+.+ ++|||||+|.+.++|.+||+..+ ..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMF-GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVE 81 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHG-GGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3456899999999999999999999 99999999999998755 89999999999999999999754 4444
No 203
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.38 E-value=1e-12 Score=116.73 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=63.6
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.++.++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.+||||||+|.+.++|.+||+..+ ..+.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~ 114 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVF-SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 114 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHH-TTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4567899999999999999999999 999999999999997 89999999999999999999999754 4444
No 204
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=8.5e-13 Score=111.76 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=62.3
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCC-eEEEEEe-cCC-CCCCceEEEEEeCCHHHHHHHHHhcC---ceeec
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGD-VVYAGID-TDK-HKYPIGSGRITFGSTRAYSDAIRAAF---IEVKS 186 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~-Vv~V~I~-~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~---veIk~ 186 (534)
.+.++|||+|||..+|+++|+++| +.||. |..+.|. .|+ ++.+||||||+|.+.++|.+||+..+ ..+..
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEI-AKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHH-HHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHH-HHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 346899999999999999999999 99998 9999998 776 88999999999999999999999763 45554
No 205
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.5e-12 Score=110.62 Aligned_cols=75 Identities=12% Similarity=0.012 Sum_probs=63.1
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
..+...++|||+|||+++||++|+++|++||+|..+.++.+ + ++||||||+| ++ +|++||+. ....+.++.+.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---R-GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---S-SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---C-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 44556789999999999999999999999999999988664 3 5789999999 55 88888854 66677777777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 93 V~ 94 (109)
T 1x4a_A 93 VE 94 (109)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 206
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=8.3e-13 Score=113.11 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=61.2
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
..++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.++|||||+|.+.++|.+||......+.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~ 92 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFF-SAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLL 92 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHH-TTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeC
Confidence 45899999999999999999999 999999999999998 799999999999999999999933345554
No 207
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.37 E-value=5.6e-13 Score=107.83 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=56.3
Q ss_pred ceeEeccccCcC------CHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 119 KTIFVGALHGRL------TAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 119 ktIFVGNLP~~~------TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
++|||+|||..+ |+++|+++| +.||.|..+.|+ ..+|.+||||||+|.+.++|.+||+..+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F-~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~ln 68 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIF-SKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNAD 68 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHH-HTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHH-hhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhc
Confidence 689999999999 779999999 999999999987 4589999999999999999999998754
No 208
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.37 E-value=2.9e-12 Score=111.45 Aligned_cols=71 Identities=17% Similarity=0.325 Sum_probs=64.4
Q ss_pred CCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 114 KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 114 ~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
...+.++|||+|||..+++++|+++| +.||.|..+.|..|+++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 102 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELF-AEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD 102 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHH-HTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 44667999999999999999999999 99999999999999999999999999999999999999755 4444
No 209
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.37 E-value=8.2e-13 Score=118.06 Aligned_cols=76 Identities=9% Similarity=-0.022 Sum_probs=67.5
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
....++|||+|||+++|+++|+++|++||+|..+.+++++.++ ++||||||+| +. +|++||+. ....+.++.+.|.
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g-~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTK-ESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSS-SCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-ccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3457899999999999999999999999999999999998887 8999999999 55 88889874 6777888888776
No 210
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.37 E-value=1.5e-12 Score=111.88 Aligned_cols=70 Identities=23% Similarity=0.338 Sum_probs=63.1
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIF-EPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHH-TTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3556899999999999999999999 999999999999997 89999999999999999999998654 3443
No 211
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=9.6e-13 Score=112.36 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=62.9
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeE--------EEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-cee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVV--------YAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEV 184 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv--------~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veI 184 (534)
..+.++|||+|||..+|+++|+++| +.||.|. .|.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFF-KQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHH-TTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHH-HhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 3457899999999999999999999 9999999 69999996 89999999999999999999999754 444
Q ss_pred e
Q psy3698 185 K 185 (534)
Q Consensus 185 k 185 (534)
.
T Consensus 91 ~ 91 (113)
T 2cpe_A 91 Q 91 (113)
T ss_dssp T
T ss_pred C
Confidence 4
No 212
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.6e-12 Score=106.86 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=61.0
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
...++|||+|||..+|+++|+++| +.| .|..+.|+.|.+++++|||||+|.+.++|.+||+.....+.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F-~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~ 75 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFL-APL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMG 75 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHH-TTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEET
T ss_pred CCccEEEEECCCCCCCHHHHHHHH-hhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeC
Confidence 456899999999999999999999 899 99999999999999999999999999999999993334444
No 213
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.37 E-value=3.8e-13 Score=118.77 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=61.2
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEE--EEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCc
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVY--AGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFI 182 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~--V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~v 182 (534)
..+.++|||||||..+|+++|+++| +.||.|.. |+|+.|+ +|++||||||+|.+. +|.+||+..+-
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F-~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g 88 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGAL-APYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQA 88 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHH-GGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcC
Confidence 3567899999999999999999999 99999977 9999999 999999999999999 99999998763
No 214
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=3.8e-13 Score=119.71 Aligned_cols=68 Identities=13% Similarity=0.016 Sum_probs=60.6
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCe----EEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDV----VYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~V----v~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
...+|||+|||+++|+++|+++| +.||.| ..|.|+.|++|++||||||+|.+.++|.+||+.....+.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F-~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~ 93 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFF-GQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLG 93 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHH-HTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeC
Confidence 45789999999999999999999 899986 689999999999999999999999999999987444443
No 215
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.37 E-value=1.5e-12 Score=113.15 Aligned_cols=69 Identities=14% Similarity=0.287 Sum_probs=62.9
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+..+|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKF-AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHH-HTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 456899999999999999999999 999999999999998 99999999999999999999998754 4443
No 216
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.37 E-value=6.1e-13 Score=115.99 Aligned_cols=69 Identities=10% Similarity=0.001 Sum_probs=62.1
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCC---eEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGD---VVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~---Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
....+|||+|||+++|+++|+++| +.||. |..|.|..|+.+++||||||+|.+.++|.+||+.....+.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F-~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~ 86 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFL-SDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMG 86 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHT-TTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeEC
Confidence 456889999999999999999999 99999 8999999998899999999999999999999994444444
No 217
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.37 E-value=4.9e-13 Score=112.20 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=62.3
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceeec
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVKS 186 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk~ 186 (534)
..++|||+|||..+|+++|+++| +.||.|..+.|..|+++.+||||||+|.+.++|.+||+ ...++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g 75 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFF-ARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHG 75 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECC
Confidence 45899999999999999999999 99999999999999999999999999999999999998 4445554
No 218
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.36 E-value=7.8e-13 Score=118.48 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=61.0
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeE--EEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVV--YAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv--~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
....+|||+|||+++|+++|+++| +.| .|+ .|.|+.|+.|++||||||+|.+.++|.+||+....++.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F-~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~ 109 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFF-SGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIG 109 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHT-TTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-hcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEEC
Confidence 456889999999999999999999 889 677 89999998899999999999999999999987554444
No 219
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=106.48 Aligned_cols=67 Identities=12% Similarity=0.305 Sum_probs=59.9
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCC-CceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKY-PIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~-pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++. ++|||||+|.+.++|.+||+..+ ..+.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIF-STYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID 73 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC
Confidence 4789999999999999999999 999999999999987 444 89999999999999999999754 4444
No 220
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.4e-12 Score=108.45 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=61.0
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC----CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK----HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk----TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVF-SKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 356889999999999999999999 999999999999876 34899999999999999999999754 4444
No 221
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.36 E-value=2.4e-12 Score=116.24 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=63.8
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.++|||||+|.+.++|.+||+..+ ..|.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 107 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELF-SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD 107 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3467899999999999999999999 999999999999998 89999999999999999999999754 5554
No 222
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.36 E-value=4.6e-13 Score=110.54 Aligned_cols=69 Identities=10% Similarity=0.040 Sum_probs=60.8
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+.++|||+|||..+|+++|+++| +.||.|..+.++.|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHT-TTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 345899999999999999999999 999999988888887 89999999999999999999999754 4444
No 223
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.36 E-value=8.7e-13 Score=109.79 Aligned_cols=70 Identities=17% Similarity=0.113 Sum_probs=52.6
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
+....+|||||||+++||++|+++|++||+|..+.++++ +||||||+| ++ +|+++... ...+.++.+.+.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~------srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP------FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS------CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC------CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEE
Confidence 445589999999999999999999999999999999874 689999999 55 77754432 222334455444
No 224
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.4e-12 Score=107.69 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=60.5
Q ss_pred CCCCceeEeccccCcCCHHHHH----HHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALY----NVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLr----eiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.....+|||+|||..+++++|+ ++| +.||.|..|.|..|+.. ||||||+|.+.++|.+||+..+ .++.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F-~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAF-ARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHH-HHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhc-cccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3456899999999999999999 999 99999999999999854 8999999999999999999765 4444
No 225
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=3.4e-12 Score=107.25 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=61.1
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..|.|..|+.+ +||||||+|.+.++|.+||+..+ ..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLF-SQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHH-HHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHH-HhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 3457899999999999999999999 99999999999998744 69999999999999999999655 4444
No 226
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.35 E-value=7.7e-13 Score=111.43 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=59.0
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC--CCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK--HKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk--TG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
....++|||+|||..+|+++|+++| +.|| |..+.|..|+ +|+++|||||+|.+.++|.+||+.....+.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~ 86 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFF-RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLG 86 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHS-CSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEEC
Confidence 3557999999999999999999999 9999 9999999997 899999999999999999999943334444
No 227
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-12 Score=108.12 Aligned_cols=73 Identities=12% Similarity=0.092 Sum_probs=60.0
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
..+..+++|||||||+++|+++|+++|++||.|. +.++.+ +++|||||+| ++ +|++|++. ....+.++.+.
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 4556678999999999999999999999999996 444432 6789999999 55 88888865 77777877777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 88 V~ 89 (97)
T 2e5j_A 88 VA 89 (97)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 228
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.4e-12 Score=113.79 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=57.5
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC---ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF---IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~---veIk 185 (534)
.+..+|||+|||+.+|+++|+++| +.||.|..|.|+.| ||||||+|.+.++|.+||+... .++.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF-~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLG-LPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHH-HHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 457899999999999999999999 99999999999984 8999999999999999999643 4554
No 229
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.1e-12 Score=109.95 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=60.3
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
+.++|||+|||..+|+++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.++|.+||+..+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 71 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIF-SEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN 71 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHH-HTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS
T ss_pred CccEEEEeCCCCcCCHHHHHHHH-HhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 45789999999999999999999 999999999999997 89999999999999999999998755
No 230
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.35 E-value=8.3e-13 Score=115.58 Aligned_cols=72 Identities=8% Similarity=-0.100 Sum_probs=60.3
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccC-CeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFG-PVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG-~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
+...++|||||||+++|+++|+++|++|| +|..+.+..+ ++||||||+| ++ +|++||+. ++..+.++.+.|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 33458999999999999999999999999 8998888643 4789999999 55 88888864 667777787777
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 100 ~ 100 (111)
T 2jvr_A 100 E 100 (111)
T ss_dssp E
T ss_pred E
Confidence 5
No 231
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=4.1e-12 Score=105.80 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=60.5
Q ss_pred CCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCc--cc
Q psy3698 18 FSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNL--CG 92 (534)
Q Consensus 18 ~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~--~k 92 (534)
...+..+++|||+|||+++||++|+++|++||+|..+.++++ ||||||+| ++ +|++|++. ....+. ++
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~ 83 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-------DSFAYIQYESLDAAQAACAKMRGFPLGGPDR 83 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCc
Confidence 344455689999999999999999999999999999988753 68999999 55 88888874 666677 67
Q ss_pred cceec
Q psy3698 93 RVEVV 97 (534)
Q Consensus 93 ~VQVr 97 (534)
.+.|.
T Consensus 84 ~l~V~ 88 (97)
T 1why_A 84 RLRVD 88 (97)
T ss_dssp BCEEE
T ss_pred EEEEE
Confidence 77765
No 232
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.35 E-value=1.7e-12 Score=112.48 Aligned_cols=67 Identities=22% Similarity=0.255 Sum_probs=60.6
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
.++|||+|||..+|+++|+++| +.||.|..|.|..|+ ++.++|||||+|.+.++|.+||+.....+.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~ 103 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHF-SSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFR 103 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHH-HTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeEC
Confidence 5899999999999999999999 999999999999997 999999999999999999999943334444
No 233
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.4e-12 Score=109.06 Aligned_cols=71 Identities=8% Similarity=-0.013 Sum_probs=61.6
Q ss_pred ccCeEEEeCCCCCCCHHHHH----HHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccce
Q psy3698 23 LSNKIFIGGVPWDTPEYLLL----TVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVE 95 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLr----e~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQ 95 (534)
..++|||||||+++||++|+ ++|++||+|..+.+++++.+ ||||||+| ++ +|++|++ +.+..+.++.+.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~----rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY----QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST----TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC----CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 45799999999999999999 99999999999999998763 89999999 55 8888887 466677777777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 84 V~ 85 (96)
T 2dgx_A 84 VS 85 (96)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 234
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=109.60 Aligned_cols=73 Identities=10% Similarity=-0.050 Sum_probs=60.2
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQV 96 (534)
.+...++|||+|||+++||++|+++|++||.| .++++ .++ ++||||||+| ++ +|++||+ +....+.++.+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNG-KSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSS-CBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCC-CEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 44567999999999999999999999999988 44555 456 8899999999 55 8888888 4666777777777
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 86 ~ 86 (101)
T 2fc9_A 86 E 86 (101)
T ss_dssp E
T ss_pred E
Confidence 6
No 235
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=8.5e-13 Score=113.35 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=66.0
Q ss_pred CCCccCeEEEeCCCCCCCHHHHH---HHhhccCCeeEEeecCCCCCC--CCCCcEEEEEe-hH-HHHHHHhh-cCCCCcc
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLL---TVFSQFGPVKVEWPQGTPESP--TAPKAISLDVI-SE-LVLILGQW-ATEGNLC 91 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLr---e~FsqFG~V~~v~~~rD~~Tg--~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~ 91 (534)
.....++|||||||+++||++|+ ++|++||+|..+.++++..++ .+++|||||+| ++ +|++||+. ....+.+
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 999999999999999987653 15679999999 55 88888885 7777778
Q ss_pred ccceec
Q psy3698 92 GRVEVV 97 (534)
Q Consensus 92 k~VQVr 97 (534)
+.+.|.
T Consensus 91 r~l~V~ 96 (111)
T 2cpi_A 91 RTLKAS 96 (111)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887776
No 236
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.34 E-value=7.2e-13 Score=108.57 Aligned_cols=61 Identities=26% Similarity=0.366 Sum_probs=58.0
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
++|||+|||..+++++|+++| +.||.|..+.|..|+ ++.++|||||+|.+.+ |.+||+..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELF-SQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTH-HHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEEECCCCCCCCHHHHHHHH-HhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhC
Confidence 589999999999999999999 999999999999998 8999999999999999 999999755
No 237
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=6.1e-12 Score=105.15 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=60.9
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
......++|||+|||+++||++|+++|++||+|..+.++++ ||||||+| +. +|++|++. ....+.++.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 44556789999999999999999999999999999988753 68999999 44 88888864 67778888887
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 83 v~ 84 (99)
T 2cpj_A 83 VR 84 (99)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 238
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.33 E-value=1.3e-12 Score=118.09 Aligned_cols=69 Identities=10% Similarity=0.024 Sum_probs=61.6
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCC---eEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGD---VVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~---Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
....+|||+|||+++|+++|+++| +.||. |..|.|+.|+.|++||||||+|.+.++|.+||+....++.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F-~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~ 113 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFL-SDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMG 113 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHT-TTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEEC
Confidence 456899999999999999999999 99999 8899999998899999999999999999999983334443
No 239
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=8.2e-13 Score=112.90 Aligned_cols=79 Identities=8% Similarity=-0.020 Sum_probs=61.1
Q ss_pred CCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccc
Q psy3698 18 FSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRV 94 (534)
Q Consensus 18 ~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~V 94 (534)
.......++|||+|||+++||++|+++|++||.|..+.+..+..++ ++||||||+| +. +|++|++. ....+.++.+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTG-RMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECS-SSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCC-ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3444567899999999999999999999999998432222222255 8899999999 55 88888875 6677777877
Q ss_pred eec
Q psy3698 95 EVV 97 (534)
Q Consensus 95 QVr 97 (534)
.|.
T Consensus 98 ~v~ 100 (115)
T 2cpx_A 98 VIE 100 (115)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 240
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.33 E-value=2.3e-12 Score=110.90 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=59.6
Q ss_pred CCccccCCCC-CCCCCCCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHH
Q psy3698 4 PQKTWEGVLP-LRTQFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLI 80 (534)
Q Consensus 4 ~~~tWsG~lP-PR~~~~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAea 80 (534)
..+.|....+ +......+...++|||||||+++||++|+++|++||+|..+.++ ||||||+| +. +|++
T Consensus 10 ~~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---------kg~afV~f~~~~~A~~ 80 (108)
T 2jvo_A 10 HSSGLVPRGSHMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---------NGFAFVEFEEAESAAK 80 (108)
T ss_dssp ------------------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---------TTEEEEECSSHHHHHH
T ss_pred ccccCcCCCCCcccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEECCHHHHHH
Confidence 4455644443 33345777788999999999999999999999999999998887 58999999 55 8888
Q ss_pred HHhh-cCCCCccccceec
Q psy3698 81 LGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 81 ALq~-ssr~i~~k~VQVr 97 (534)
|++. .+..+.++.+.|.
T Consensus 81 Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 81 AIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp HHHHHTTCEETTEECEEE
T ss_pred HHHHcCCCEECCeEEEEE
Confidence 8874 6777777777775
No 241
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=3.7e-12 Score=109.44 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=57.5
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh---cCCCCcccccee
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW---ATEGNLCGRVEV 96 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~---ssr~i~~k~VQV 96 (534)
..+++|||||||+++||++|+++|++||.|..+.++++ ||||||+| ++ +|++|++. ....+.++.+.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 34689999999999999999999999999999988764 68999999 55 88888874 344567777776
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 86 ~ 86 (101)
T 2cq1_A 86 Q 86 (101)
T ss_dssp E
T ss_pred E
Confidence 5
No 242
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.33 E-value=1.8e-12 Score=115.38 Aligned_cols=74 Identities=19% Similarity=0.149 Sum_probs=66.8
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
..++|||+|||+++|+++|+++|++||.|..+.+++++.++ +++|||||+| +. +|++|+++....+.++.+.|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g-~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~ 161 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTG-QSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIK 161 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSS-TTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCC-ccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEe
Confidence 35689999999999999999999999999999999998888 9999999999 55 999999877777888888776
No 243
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.32 E-value=1.7e-12 Score=125.96 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=61.6
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCC--CeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFG--DVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG--~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
...+|||+|||..+|+++|+++| +.|| .|+.|.|+.|+ ++++||||||+|.+.++|.+||+..+ .+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F-~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAV-HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHH-HTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCCCCCHHHHHHHH-HHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 45789999999999999999999 9999 99999999997 99999999999999999999999765 4444
No 244
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=6e-12 Score=107.35 Aligned_cols=67 Identities=10% Similarity=-0.024 Sum_probs=57.1
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcc-----ccc
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLC-----GRV 94 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~-----k~V 94 (534)
..++|||+|||+++||++|+++|++||+|..+.++++ |||||+| ++ +|++||+. +...+.+ +.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 4689999999999999999999999999999999876 7999999 65 88888884 5555655 666
Q ss_pred eec
Q psy3698 95 EVV 97 (534)
Q Consensus 95 QVr 97 (534)
.|.
T Consensus 86 ~V~ 88 (108)
T 1x4c_A 86 RVK 88 (108)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 245
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=3.4e-12 Score=109.57 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=62.4
Q ss_pred CCCCCCceeEeccccCcCCHHHHH---HHhhhcCCCeEEEEEecCC-C---CCCceEEEEEeCCHHHHHHHHHhcC-cee
Q psy3698 113 TKLEPGKTIFVGALHGRLTAQALY---NVMNDLFGDVVYAGIDTDK-H---KYPIGSGRITFGSTRAYSDAIRAAF-IEV 184 (534)
Q Consensus 113 ~~~d~~ktIFVGNLP~~~TeedLr---eiF~s~FG~Vv~V~I~~Dk-T---G~pKGfGFVtF~d~EsA~kAIea~~-veI 184 (534)
.+.....+|||+|||..+++++|+ ++| ++||.|..+.|+.|+ + +.++|||||+|.+.++|.+||+..+ .++
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F-~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYF-GKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTT-TTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHh-hccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 344567899999999999999999 999 999999999999887 3 4677999999999999999999855 444
Q ss_pred e
Q psy3698 185 K 185 (534)
Q Consensus 185 k 185 (534)
.
T Consensus 89 ~ 89 (111)
T 2cpi_A 89 D 89 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 246
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=112.01 Aligned_cols=69 Identities=12% Similarity=-0.023 Sum_probs=61.4
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCC---eEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCcee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGD---VVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEV 184 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~---Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veI 184 (534)
.....+|||+|||+++|+++|+++| +.||. |..|.|..|+.|++||||||+|.+.++|.+||+.....+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F-~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~ 79 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFF-SDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYM 79 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHT-TTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHH-HhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCccee
Confidence 3456899999999999999999999 89888 899999999889999999999999999999998433333
No 247
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.00 E-value=1.4e-13 Score=118.47 Aligned_cols=77 Identities=17% Similarity=0.108 Sum_probs=65.9
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeE--------EeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCC
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKV--------EWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEG 88 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~--------v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~ 88 (534)
+....++|||+|||+++|+++|+++|++||.|.. +.+++++.++ ++||||||+| +. +|++|++. ....
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETG-KLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 3455689999999999999999999999999998 8899988877 8999999999 55 88888874 6667
Q ss_pred Cccccceec
Q psy3698 89 NLCGRVEVV 97 (534)
Q Consensus 89 i~~k~VQVr 97 (534)
+.++.+.|.
T Consensus 82 ~~g~~l~V~ 90 (116)
T 2lcw_A 82 FSGNPIKVS 90 (116)
Confidence 777777665
No 248
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=5.8e-12 Score=108.25 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=55.4
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhc
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAA 180 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~ 180 (534)
..+.++|||+|||..+|+++|+++| +.||.|..|.|+.+ ||||||+|.+.++|.+||+..
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F-~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l 71 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALG-LPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYY 71 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTT-TTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHh
Confidence 3567899999999999999999999 99999999998874 899999999999999999864
No 249
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=3.2e-12 Score=109.61 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=61.7
Q ss_pred CCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 114 KLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 114 ~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.....++|||+|||..+|+++|+++| +.||.|..+.|..|+.+ +||||||+|.+.++|.+||+..+ ..+.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~-~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMF-GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHG-GGTCCCSCEEECCBTTB-CTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHH-HhcCCEEEEEEEECCCC-CceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34567899999999999999999999 99999999999998744 89999999999999999999754 4444
No 250
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=3.4e-12 Score=113.56 Aligned_cols=70 Identities=17% Similarity=0.078 Sum_probs=58.8
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhc---CCCCccccce
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWA---TEGNLCGRVE 95 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~s---sr~i~~k~VQ 95 (534)
...+++|||||||+++||++|+++|++||+|..+.++++ ||||||+| ++ +|++|++.. ...+.++.+.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 334689999999999999999999999999999998874 68999999 55 888888752 3567778877
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 101 V~ 102 (119)
T 2ad9_A 101 IQ 102 (119)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 251
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=6.9e-12 Score=106.57 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=58.8
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+.++|||+|||..+|+++|+++| +.||.|..+.|..+ +.+||||||+|.+.++|.+||+..+ .++.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVF-YKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD 87 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456899999999999999999999 99999999999664 4589999999999999999998765 4443
No 252
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=7.9e-12 Score=102.75 Aligned_cols=69 Identities=19% Similarity=0.085 Sum_probs=58.6
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
....++|||+|||+++||++|+++|++||+|..+.++ ||||||+| +. +|++|++. ....+.++.+.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 3456899999999999999999999999999998886 47999999 55 88888864 6667788888776
Q ss_pred c
Q psy3698 98 P 98 (534)
Q Consensus 98 P 98 (534)
.
T Consensus 76 ~ 76 (90)
T 2dnq_A 76 A 76 (90)
T ss_dssp C
T ss_pred E
Confidence 3
No 253
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.31 E-value=2.7e-12 Score=117.44 Aligned_cols=75 Identities=12% Similarity=0.085 Sum_probs=65.3
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
...++|||+|||+++|+++|+++|++||+|..+.+++++.++ .++|||||+| +. +|++||+. .+..+.++.+.|.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTG-FSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTS-SEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCC-cEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 446789999999999999999999999999999999998888 8999999999 55 88888874 6666777777775
No 254
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.31 E-value=3.5e-12 Score=106.14 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=50.8
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHH
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDA 176 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kA 176 (534)
.+..+|||||||.++|+++|+++| ++||.|..|.|+.| +||||||+|.+.++|.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F-~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFF-CQYGEVVDVFIPKP----FRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEECCSS----CCSEEEEEESCHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-hccCCEEEEEEeeC----CCCEEEEEECCHHHHHHH
Confidence 456899999999999999999999 99999999999885 899999999999999854
No 255
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=5.3e-12 Score=105.69 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=58.7
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.| .|..+.++.+||||||+|.+.++|.+||+..+ ..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVF-EKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 79 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHC-SSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 3457999999999999999999999 899987 56777789999999999999999999999765 4444
No 256
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.8e-12 Score=106.12 Aligned_cols=68 Identities=21% Similarity=0.131 Sum_probs=53.8
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
.+++|||||||+++||++|+++|++||+|..+.++++ +||||||+| ++ +|++|+.. ...+.++.+.+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~ 73 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP------FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHIS 73 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS------CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC------CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEE
Confidence 3589999999999999999999999999999998864 579999999 55 77766543 222344555554
No 257
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.30 E-value=5.1e-12 Score=107.48 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=60.1
Q ss_pred CCCceeEeccccCcC------CHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRL------TAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~------TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
...++|||||||..+ |+++|+++| +.||.|..|.|. ..+|.+||||||+|.+.++|.+||+..+ ..+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F-~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIF-SKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHH-GGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHH-hcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 346899999999999 789999999 999999999988 4689999999999999999999999865 3443
No 258
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.30 E-value=1e-12 Score=119.40 Aligned_cols=68 Identities=15% Similarity=0.245 Sum_probs=59.4
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
...++|||+|||+++|+++|+++| +.|| |+.|.|+.|+.+++||||||+|.+.++|.+||+.....+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F-~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~ 111 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFF-SPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQ 111 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHH-CSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEEC
Confidence 456899999999999999999999 9999 7799999999999999999999999999999943333333
No 259
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=1.4e-11 Score=105.01 Aligned_cols=75 Identities=23% Similarity=0.273 Sum_probs=62.0
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceeeccce-eeee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVKSGRI-CKKL 193 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk~~k~-~KrV 193 (534)
....+|||+|||.++|+++|+++| +.||.|+.|.|..| |||||+|.+.++|.+||+..+ .++..... .++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHM-REAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHH-GGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 456899999999999999999999 99999999999886 999999999999999999765 45543221 2445
Q ss_pred eecc
Q psy3698 194 QIDP 197 (534)
Q Consensus 194 eIkP 197 (534)
+|+.
T Consensus 86 ~V~~ 89 (108)
T 1x4c_A 86 RVKV 89 (108)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5553
No 260
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.1e-12 Score=114.49 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=59.0
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecC-CCCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTD-KHKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~D-kTG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
....+|||+|||+.+|+++|+++| +.||.|..+.++.+ .+++++|||||+|.+.++|.+||+.....+.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F-~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~ 92 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFF-KKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMG 92 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHS-CSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCST
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeEC
Confidence 456899999999999999999999 99999988555555 4999999999999999999999994334444
No 261
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=3e-12 Score=110.66 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=57.4
Q ss_pred CccCeEEEeCCCC-CCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-c--CCCCccccce
Q psy3698 22 ILSNKIFIGGVPW-DTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-A--TEGNLCGRVE 95 (534)
Q Consensus 22 ~~SrKVFVGNLP~-diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-s--sr~i~~k~VQ 95 (534)
..+++|||||||+ ++||++|+++|++||+|..++++++ ||||||+| .+ +|++|++. . ...+.++.+.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 3578999999999 9999999999999999999999864 47999999 55 88888875 2 2346777777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 86 V~ 87 (102)
T 1x4d_A 86 VH 87 (102)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 262
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.29 E-value=5e-12 Score=105.84 Aligned_cols=71 Identities=14% Similarity=0.028 Sum_probs=58.0
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
.+...++|||||||+++|+++|+++|++||+|..+.++ ++||||||+| +. +|++|++. .+..+.++.+.|
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456899999999999999999999999999998886 3479999999 55 88888864 666666666655
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 96 ~ 96 (101)
T 2la4_A 96 G 96 (101)
T ss_dssp C
T ss_pred E
Confidence 4
No 263
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=3.9e-12 Score=109.95 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=56.5
Q ss_pred CCCCCceeEeccccC-cCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 114 KLEPGKTIFVGALHG-RLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 114 ~~d~~ktIFVGNLP~-~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..++.++|||+|||. .+|+++|+++| +.||.|..|.|+.| ||||||+|.+.++|.+||+..+
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF-~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~ 73 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLV-EPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYT 73 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTT-GGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHH-HhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHc
Confidence 345789999999999 99999999999 99999999999874 6999999999999999999754
No 264
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.29 E-value=5.9e-12 Score=109.06 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=56.3
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+.++|||+|||..+|+++|+++| +.||.|..|.|.. .||||||+|.+.++|.+||+...
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF-~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln 78 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEAL-QEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAA 78 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-hccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhc
Confidence 4578999999999999999999999 9999999999986 68999999999999999998754
No 265
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.29 E-value=8.8e-12 Score=114.07 Aligned_cols=70 Identities=14% Similarity=0.249 Sum_probs=62.8
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..|.|..++ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 140 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKF-CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 140 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHh-hcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3456889999999999999999999 999999999999997 99999999999999999999999755 4443
No 266
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=8e-12 Score=107.77 Aligned_cols=60 Identities=13% Similarity=0.240 Sum_probs=55.3
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhc
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAA 180 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~ 180 (534)
..+.++|||+|||..+|+++|+++| ++||.|..|.|+. .||||||+|.+.++|.+||+..
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F-~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l 71 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEAL-EKFGTICYVMMMP-----FKRQALVEFENIDSAKECVTFA 71 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHH-TTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEC-----CCCEEEEEECCHHHHHHHHHHh
Confidence 3567899999999999999999999 9999999999887 4899999999999999999864
No 267
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.29 E-value=6.5e-12 Score=105.72 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=57.4
Q ss_pred CCCCCccCeEEEeCCCC-CCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccc
Q psy3698 18 FSDEILSNKIFIGGVPW-DTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGR 93 (534)
Q Consensus 18 ~~~p~~SrKVFVGNLP~-diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~ 93 (534)
......+++|||||||+ ++|+++|+++|++||.|..+.+. ||||||+| ++ +|++|++. .+..+.++.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34555679999999998 99999999999999999988873 68999999 55 88888884 566666777
Q ss_pred ceec
Q psy3698 94 VEVV 97 (534)
Q Consensus 94 VQVr 97 (534)
+.|.
T Consensus 87 l~V~ 90 (97)
T 2xnq_A 87 LILE 90 (97)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 6665
No 268
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=5.3e-12 Score=112.29 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=56.1
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+.++|||+|||.++|+++|+++| +.||.|+.|.|+.+ ||||||+|.+.++|.+||+...
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF-~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~ 88 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLG-LPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYT 88 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHH-TTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhc
Confidence 3567899999999999999999999 99999999999884 8999999999999999998643
No 269
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=2.4e-12 Score=113.35 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=55.6
Q ss_pred CCCCceeEeccccCc-CCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhc
Q psy3698 115 LEPGKTIFVGALHGR-LTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAA 180 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~-~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~ 180 (534)
..+.++|||+|||.+ +|+++|+++| +.||.|..|.|.. +||||||+|.+.++|.+||+..
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF-~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l 82 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLA-EPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHC 82 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTT-TTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHH-HhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHh
Confidence 456789999999998 9999999999 9999999999975 6899999999999999999864
No 270
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=6.7e-12 Score=101.51 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=57.5
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh--cCCCCcccccee
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW--ATEGNLCGRVEV 96 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~--ssr~i~~k~VQV 96 (534)
....++|||+|||+++|+++|+++|++||+|..+.++++ ||||||+| +. +|++|++. ....+.++.+.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 345689999999999999999999999999999988763 68999999 55 88888884 455566665555
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 82 ~ 82 (85)
T 2ytc_A 82 K 82 (85)
T ss_dssp E
T ss_pred E
Confidence 4
No 271
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=1.2e-11 Score=106.70 Aligned_cols=67 Identities=12% Similarity=-0.051 Sum_probs=56.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh---cCCCCccccceec
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW---ATEGNLCGRVEVV 97 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~---ssr~i~~k~VQVr 97 (534)
+++|||+|||+++||++|+++|++||+|..++++++ ||||||+| ++ +|++|++. ....+.++.+.|.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 578999999999999999999999999999888763 68999999 55 88888874 2234777777775
No 272
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.1e-11 Score=105.49 Aligned_cols=70 Identities=14% Similarity=0.053 Sum_probs=60.0
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
+...++|||||||+++|+++|+++|++||+|..+.++++ ||||||+| +. +|++|++. ....+.++.+.|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 445689999999999999999999999999999998875 68999999 55 88888854 6667777777776
No 273
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.1e-11 Score=102.95 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=59.4
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
....++|||||||+++||++|+++|++||+|..+ +.++.++ + ||||+| ++ +|++||++....+.++.+.|.
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g-~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKG-V---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVR 77 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSC-C---EEEEEESSHHHHHHHHTCSCCEETTEECCCB
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCC-c---EEEEEECCHHHHHHHHhcCCeEECCEEEEEE
Confidence 3446899999999999999999999999999976 5555555 2 999999 66 999999877777777777776
No 274
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.28 E-value=4.5e-12 Score=109.84 Aligned_cols=63 Identities=10% Similarity=-0.037 Sum_probs=53.6
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCcccc
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGR 93 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~ 93 (534)
..++|||+|||+++||++|+++|++||+|..+.++++ |||||+| ++ +|++||+ ++...+.++.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3689999999999999999999999999999999875 7999999 55 8888887 4666666666
No 275
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.28 E-value=6.5e-12 Score=101.79 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=58.5
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhcc----C-------CeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCC
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQF----G-------PVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEG 88 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqF----G-------~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~ 88 (534)
..+++|||||||+++|+++|+++|++| | +|..+.++++ ||||||+| ++ +|++|+.+++..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 346899999999999999999999999 8 8998888754 68999999 65 888888667777
Q ss_pred Cccccceec
Q psy3698 89 NLCGRVEVV 97 (534)
Q Consensus 89 i~~k~VQVr 97 (534)
+.++.+.|.
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 777776664
No 276
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=6.2e-12 Score=105.23 Aligned_cols=75 Identities=17% Similarity=0.070 Sum_probs=61.2
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQ 95 (534)
..+...++|||+|||+++||++|+++|++|+. +.+++++.++ +++|||||+| ++ +|++||+ +....+.++.+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETG-SSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSE---EEEEECSSSC-SEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeE---EEEEecCCCC-CcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34456799999999999999999999998854 4556676667 8999999999 55 8888887 477777777777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 86 V~ 87 (102)
T 2fc8_A 86 LD 87 (102)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 277
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.28 E-value=6.7e-12 Score=117.38 Aligned_cols=76 Identities=9% Similarity=0.011 Sum_probs=65.5
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
.+...++|||+|||+++||++|+++|++||+|..+.++.+. ++ +++|||||+| +. +|++||+. ....+.++.+.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g-~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SG-RSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TS-SCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CC-CEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456899999999999999999999999999999999998 67 8999999999 55 88888884 666777777766
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 162 ~ 162 (177)
T 2f3j_A 162 Q 162 (177)
T ss_dssp E
T ss_pred E
Confidence 5
No 278
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=110.69 Aligned_cols=71 Identities=11% Similarity=-0.029 Sum_probs=59.1
Q ss_pred ccCeEEEeCCCCCCCHHHHH----HHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 23 LSNKIFIGGVPWDTPEYLLL----TVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLr----e~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
..++|||||||+++++++|+ ++|++||+|..+.+.+ ++ ++||||||+| +. +|++|++. .+..+.++.+.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~-~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SD-DNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CC-SSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CC-CcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 36799999999999999876 6999999999888765 35 7899999999 55 88888864 77777788777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 104 V~ 105 (127)
T 2a3j_A 104 IT 105 (127)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 279
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.27 E-value=1e-11 Score=111.36 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=62.6
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQ 95 (534)
......++|||||||+++||++|+++|++||+|..+.++++ +||||||+| ++ +|++|++ +.+..+.++.+.
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 44556789999999999999999999999999999999886 479999999 55 8888887 477778888777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 142 v~ 143 (150)
T 2i2y_A 142 VE 143 (150)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 280
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=2e-11 Score=98.66 Aligned_cols=64 Identities=22% Similarity=0.260 Sum_probs=57.4
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhc-C-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAA-F-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~-~-veIk 185 (534)
.+.++|||+|||..+|+++|+++| +.||.|..+.|.. +||||||+|.+.++|.+||+.. + ..+.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f-~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~ 75 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHF-YQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVN 75 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHH-HTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred CCccEEEEcCCCCCCCHHHHHHHH-HhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence 456899999999999999999999 9999999999987 5899999999999999999975 3 4444
No 281
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=1.2e-11 Score=108.87 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=58.3
Q ss_pred CCccCeEEEeCCCCC-CCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh---cCCCCccccc
Q psy3698 21 EILSNKIFIGGVPWD-TPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW---ATEGNLCGRV 94 (534)
Q Consensus 21 p~~SrKVFVGNLP~d-iTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~---ssr~i~~k~V 94 (534)
...+++|||||||++ +||++|+++|++||+|..+++++ +||||||+| ++ +|++|++. ....+.++.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 445789999999998 99999999999999999999864 479999999 55 88888874 3345777777
Q ss_pred eec
Q psy3698 95 EVV 97 (534)
Q Consensus 95 QVr 97 (534)
.|.
T Consensus 95 ~V~ 97 (112)
T 1x4f_A 95 KVD 97 (112)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 282
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.27 E-value=2.1e-12 Score=107.04 Aligned_cols=73 Identities=12% Similarity=0.009 Sum_probs=59.9
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
......++|||+|||+++|+++|+++|++||.|..+ ..++ +++|||||+| ++ +|++|++. .+..+.++.+.
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDG-KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETT-EEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCC-CcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 455567999999999999999999999999998765 2345 7899999999 55 88888884 66667777777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
+.
T Consensus 85 v~ 86 (96)
T 1fjc_A 85 LY 86 (96)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 283
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.26 E-value=1.1e-11 Score=117.33 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=63.3
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceeec
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVKS 186 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk~ 186 (534)
.++|||+|||..+|+++|+++| +.||.|..|.|..|.++.+||||||+|.+.++|.+||+....++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F-~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~G 176 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWL-EDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKE 176 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHH-TTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHH-hcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECC
Confidence 4889999999999999999999 9999999999999999999999999999999999999887665554
No 284
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.26 E-value=1.1e-12 Score=109.84 Aligned_cols=68 Identities=15% Similarity=0.070 Sum_probs=59.2
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
.+.++|||+|||..+|+++|+++| +.||.|.. .++.|+ ++.+||||||+|.+.++|.+||+.....+.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~ 83 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAI-SELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVF 83 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHH-HHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEEC
Confidence 356899999999999999999999 99999988 666775 899999999999999999999983334444
No 285
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=2.4e-11 Score=99.81 Aligned_cols=62 Identities=23% Similarity=0.333 Sum_probs=55.7
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+.++|||+|||..+|+++|+++| +.||.|..+.|. ||||||+|.+.++|.+||+..+ ..+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~ 68 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLF-EQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLH 68 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHH-HTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccC
Confidence 457899999999999999999999 999999999986 6999999999999999998765 3444
No 286
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.25 E-value=7.3e-12 Score=109.58 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=58.0
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCC-CeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceeec
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFG-DVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVKS 186 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG-~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk~ 186 (534)
....+|||+|||+++|+++|+++| +.|| .|..+.|..+ .++|||||+|.+.++|.+||+..+ .++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F-~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLA-RENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHH-HHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHH-HHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 346899999999999999999999 9999 8999988643 489999999999999999998765 44543
No 287
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.25 E-value=1.5e-11 Score=102.33 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=57.5
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..+.|..+ ||||||+|.+.++|.+||+..+ ..+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREF-DRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHH-HTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 3456899999999999999999999 99999999999873 8999999999999999999755 3443
No 288
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.25 E-value=7.1e-12 Score=118.57 Aligned_cols=73 Identities=15% Similarity=0.008 Sum_probs=64.7
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccceec
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVEVV 97 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQVr 97 (534)
..++|||+|||+++|+++|+++|++||+|..+.++++.. + ++||||||+| ++ +|++|++.....+.++.+.|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~-~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-K-AFKGSIFVVFDSIESAKKFVETPGQKYKETDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-C-CEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-C-CcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 468999999999999999999999999999999998765 5 8999999999 66 999999876667777877776
No 289
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.6e-11 Score=102.75 Aligned_cols=69 Identities=29% Similarity=0.278 Sum_probs=58.7
Q ss_pred CCCCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 113 TKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 113 ~~~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
....+.++|||+|||..+|+++|+++| +.|+ .+.|+.|+ ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESF-DGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTS-TTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHh-cCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 344567999999999999999999999 6664 67778886 89999999999999999999999754 4444
No 290
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=3.9e-12 Score=104.18 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=52.6
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea 179 (534)
+.++|||+|||..+|+++|+++| +.||.|..+.|..+ +||||||+|.+.++|.+|+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~ 61 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFF-SQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE 61 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHS-TTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHH-HHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC
Confidence 46899999999999999999999 99999999999875 799999999999999876543
No 291
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=3.2e-11 Score=100.71 Aligned_cols=70 Identities=10% Similarity=0.043 Sum_probs=58.2
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhcc--CCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCcccc
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQF--GPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGR 93 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqF--G~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~ 93 (534)
......++|||+|||+++|+++|+++|++| |.|..+.++ ||||||+| +. +|++|++ +....+.++.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 445567899999999999999999999999 889877653 57999999 55 8888888 5667777777
Q ss_pred ceec
Q psy3698 94 VEVV 97 (534)
Q Consensus 94 VQVr 97 (534)
+.|.
T Consensus 81 l~v~ 84 (99)
T 2cpd_A 81 IEVT 84 (99)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7776
No 292
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.24 E-value=3.3e-11 Score=112.64 Aligned_cols=70 Identities=17% Similarity=0.335 Sum_probs=63.6
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+..+|||+|||..+++++|+++| +.||.|+.|.|..|+++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 155 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELF-AEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD 155 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHH-HHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 3456899999999999999999999 89999999999999999999999999999999999999755 4444
No 293
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.24 E-value=1.6e-11 Score=106.35 Aligned_cols=68 Identities=18% Similarity=0.026 Sum_probs=55.2
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCC--CCccccceec
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATE--GNLCGRVEVV 97 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr--~i~~k~VQVr 97 (534)
-+++|||+|||+++||++|+++|++||+|..+.+++ .||||||+| ++ +|++|++. ... .+.++.+.|.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 357899999999999999999999999999998875 368999999 55 88888875 222 2556666554
No 294
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.24 E-value=1.3e-11 Score=106.39 Aligned_cols=69 Identities=12% Similarity=-0.047 Sum_probs=58.3
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
...++|||+|||+++|+++|+++|++||.|..+.+++ +||||||+| +. +|++|++. .+..+.++.+.|.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3468999999999999999999999999999888764 468999999 55 88888874 6777777777765
No 295
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.7e-11 Score=102.24 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=57.1
Q ss_pred CCccCeEEEeCCCC-CCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 21 EILSNKIFIGGVPW-DTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 21 p~~SrKVFVGNLP~-diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
....++|||||||+ ++||++|+++|++||+|..+.+. ||||||+| +. +|++|++. ....+.++.+.|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34568999999999 99999999999999999998873 58999999 55 88888884 677777787777
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 78 ~ 78 (96)
T 2kvi_A 78 E 78 (96)
T ss_dssp E
T ss_pred E
Confidence 6
No 296
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.23 E-value=5.4e-12 Score=104.49 Aligned_cols=71 Identities=11% Similarity=0.017 Sum_probs=59.7
Q ss_pred ccCeEEEeCCCCCCCHHHHH----HHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 23 LSNKIFIGGVPWDTPEYLLL----TVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLr----e~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
.+++|||+|||+++|+++|+ ++|++||.|..+.+++ ++ +++|||||+| +. +|++|++. .+..+.++.+.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SL-KMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HH-HHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CC-CcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 46899999999999999999 9999999999988874 34 6789999999 55 88888874 66667777776
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
+.
T Consensus 83 v~ 84 (97)
T 1nu4_A 83 IQ 84 (97)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 297
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.23 E-value=1.2e-11 Score=107.11 Aligned_cols=65 Identities=26% Similarity=0.320 Sum_probs=56.5
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceeeccc
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVKSGR 188 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk~~k 188 (534)
...+|||+|||.++|+++|+++| +.||.|+.|.|..| |||||+|.+.++|.+||+..+ .++....
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F-~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHM-REAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHH-GGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 45889999999999999999999 99999999999886 999999999999999999765 4454433
No 298
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.23 E-value=1.3e-11 Score=105.12 Aligned_cols=69 Identities=14% Similarity=0.098 Sum_probs=57.6
Q ss_pred CCCccCeEEEeCCCCC-CCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 20 DEILSNKIFIGGVPWD-TPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~d-iTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
.....++|||+|||++ +||++|+++|++||+|..+.+ +||||||+| ++ +|++|++. ....+.++.+.
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4445689999999999 999999999999999999887 368999999 44 88888854 66677777777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 94 V~ 95 (110)
T 1wf1_A 94 IN 95 (110)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 299
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.23 E-value=1.7e-11 Score=102.40 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=57.6
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..+.|.. .||||||+|.+.++|.+||+..+ ..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~~~~-----~kg~afV~f~~~~~a~~a~~~l~g~~~~ 77 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLF-EKYGKAGEVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLR 77 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHT-STTCCCSEEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-hhcCCeEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 3456899999999999999999999 9999999999986 48999999999999999998755 4443
No 300
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=3.3e-12 Score=109.12 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=57.6
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+.++|||+|||..+|+++|+++| +.||.|..+.+..+. ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 93 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLF-ARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY 93 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHT-HHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 457899999999999999999999 999999544333333 78899999999999999999999754 4443
No 301
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=2.2e-11 Score=108.78 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=56.8
Q ss_pred CCCCceeEeccccCcCCHHHHH----HHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 115 LEPGKTIFVGALHGRLTAQALY----NVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLr----eiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+..+|||||||..+++++|+ ++| +.||.|+.|.|. .++.+||||||+|.+.++|.+||+..+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F-~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~ln 93 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALA-SSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQ 93 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHH-HHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHST
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHh-ccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHC
Confidence 4567899999999999999876 689 999999988774 467899999999999999999998865
No 302
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.22 E-value=7.3e-12 Score=114.09 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=62.0
Q ss_pred cCeEEEeCC----CCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-h-----H-H---HHHHHhh---cC
Q psy3698 24 SNKIFIGGV----PWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-S-----E-L---VLILGQW---AT 86 (534)
Q Consensus 24 SrKVFVGNL----P~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-s-----E-s---AeaALq~---ss 86 (534)
+.+|||||| |+.++|++|+++|++||+|..+.++.|+.|| ++||||||+| . + + |.+|+.. ..
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg-~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSA-LPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTC-CEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-ceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 378999999 9999999999999999999999999999999 9999999999 4 3 3 6777662 55
Q ss_pred CCCccccceec
Q psy3698 87 EGNLCGRVEVV 97 (534)
Q Consensus 87 r~i~~k~VQVr 97 (534)
..+.++.+.|.
T Consensus 81 ~~I~Gr~irV~ 91 (136)
T 2j8a_A 81 CFIMGFKFEVI 91 (136)
T ss_dssp EEETTEEEEEE
T ss_pred CeecCcEEEEE
Confidence 56666666664
No 303
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.21 E-value=1.2e-11 Score=105.45 Aligned_cols=66 Identities=14% Similarity=-0.030 Sum_probs=53.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
+.-||||||++.+||++|+++|.+||+|..+.+.. +||||||+| ++ +|++|++. +...+.++.+.|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V 75 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-------NQGIALCKYTTREEANKAQMALNNCVLANTTIFA 75 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 57899999999999999999999999999988854 689999999 66 88888875 444444444443
No 304
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.21 E-value=3e-11 Score=103.37 Aligned_cols=63 Identities=13% Similarity=0.310 Sum_probs=57.3
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
++.++|||+|||..+|+++|+++| +.||.|..+.|..|. .++|||||+|.+.++|.+||+..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~ 68 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIF-GKYGPIRQIRVGNTP--ETRGTAYVVYEDIFDAKNAVDHLS 68 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEECST--TTTTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeeCC--CCCcEEEEEECCHHHHHHHHHHcC
Confidence 456899999999999999999999 999999999998764 459999999999999999999754
No 305
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.85 E-value=1.2e-12 Score=112.69 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=60.2
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEE--------EEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVY--------AGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~--------V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.+.++|||+|||..+|+++|+++| +.||.|.. +.|..|+ ++.++|||||+|.+.++|.+||+..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYF-KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 78 (116)
Confidence 456889999999999999999999 99999999 8999996 89999999999999999999998644
No 306
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=3.1e-11 Score=102.69 Aligned_cols=64 Identities=17% Similarity=0.310 Sum_probs=57.2
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
...++|||+|||..+|+++|+++| +.||.|..|.|..+ +|||||+|.+.++|.+||+..+ ..+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F-~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTF-SPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHH-HHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 346899999999999999999999 99999999999985 8999999999999999998754 4444
No 307
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=9.8e-12 Score=102.57 Aligned_cols=69 Identities=12% Similarity=-0.042 Sum_probs=55.7
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCC-eeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cC-CCCccccce
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGP-VKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-AT-EGNLCGRVE 95 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~-V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ss-r~i~~k~VQ 95 (534)
....++|||||||+++||++|+++|++||. |..+.+ .++|||||+| ++ +|++|++. .. ..+.++.+.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 345689999999999999999999999999 554444 2478999999 55 88888874 55 677788877
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 77 v~ 78 (93)
T 2cqh_A 77 VD 78 (93)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 308
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=3.6e-11 Score=98.80 Aligned_cols=69 Identities=17% Similarity=0.019 Sum_probs=58.8
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
.+...++|||+|||+++|+++|+++|++||+|..+.+++ |||||+| +. +|++|++. ....+.++.+.|
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK---------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS---------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC---------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345578999999999999999999999999999998874 4999999 55 88888874 667777787777
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 76 ~ 76 (90)
T 2dnp_A 76 E 76 (90)
T ss_dssp E
T ss_pred E
Confidence 6
No 309
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.21 E-value=2.6e-11 Score=101.47 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=56.3
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..++|||+|||..+|+++|+++| +.||.|..+.|.. +||||||+|.+.++|.+||+..+ ..+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f-~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLF-QNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHH-HTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEcCCCcccCHHHHHHHH-HhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 35899999999999999999999 9999999999884 78999999999999999998755 4443
No 310
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.21 E-value=3.3e-11 Score=110.14 Aligned_cols=76 Identities=16% Similarity=0.069 Sum_probs=66.6
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
+...++|||+|||+++|+++|+++|++||.|..+.+++++.++ +++|||||+| +. +|++|++. .+..+.++.+.+.
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG-LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 189 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTC-SEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCC-CcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3567899999999999999999999999999999999998777 8999999999 55 88888874 7777777777776
No 311
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=1.6e-11 Score=102.73 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=54.3
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.+|||+|||..+|+++|+++| +.||.|..+.|..| ++|||||+|.+.++|.+||+..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAF-SYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHH-HHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHC
Confidence 379999999999999999999 99999999999987 79999999999999999999743
No 312
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.20 E-value=2.9e-11 Score=101.87 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=57.1
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
...++|||+|||+++||++|+++|++||+|..+.++ ||||||+| ++ +|++|++. ....+.++.+.|.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 346899999999999999999999999999998876 36999999 55 88888884 6667777777776
No 313
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.20 E-value=2.2e-11 Score=129.00 Aligned_cols=76 Identities=21% Similarity=0.141 Sum_probs=65.9
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceec
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVV 97 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVr 97 (534)
....++|||||||+++|+++|+++|++||+|..+.|+.+..++ .++|||||+| +. +|++||+. ++..|.++.|.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSG-KPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCC-CccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445899999999999999999999999999999999998888 9999999999 55 88888865 6667777777665
No 314
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.20 E-value=1.7e-11 Score=101.54 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=56.9
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..+ +.++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F-~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 79 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVF-EDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 79 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHH-CSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-hhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3456899999999999999999999 899988665 4578899999999999999999999765 3443
No 315
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.9e-11 Score=108.20 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=55.1
Q ss_pred CCCceeEe--ccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKTIFV--GALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~ktIFV--GNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.+.++||| |||+..+|+++|+++| ++||.|..|.|.. .||||||+|.+.++|.+||++++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F-~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~ln 84 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVL-EKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLN 84 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHH-HHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHH-HhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhC
Confidence 46789999 8899999999999999 9999999998865 48999999999999999999876
No 316
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.20 E-value=2e-11 Score=104.13 Aligned_cols=58 Identities=12% Similarity=0.062 Sum_probs=54.9
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..-||||||++.+|+++|+++| .+||+|..+.+.. +||||||+|.+.++|.+||+..+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF-~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln 64 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLC-MQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALN 64 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHH-HHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHT
T ss_pred cceEEEeCCCccCCHHHHHHHH-HhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhc
Confidence 4579999999999999999999 9999999999977 89999999999999999999976
No 317
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.20 E-value=4.3e-12 Score=113.00 Aligned_cols=78 Identities=10% Similarity=-0.060 Sum_probs=61.2
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEE--eecCC---CCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCc
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVE--WPQGT---PESPTAPKAISLDVI-SE-LVLILGQ-WATEGNL 90 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v--~~~rD---~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~ 90 (534)
.....+++|||||||+++|+++|+++|++||.|..+ .++.+ ..++ +++|||||+| +. +|++||+ +.+..+.
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g-~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEG-RMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEET-TTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCC-CcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 344556899999999999999999999999998764 12222 2345 8899999999 55 8888888 4677777
Q ss_pred cccceec
Q psy3698 91 CGRVEVV 97 (534)
Q Consensus 91 ~k~VQVr 97 (534)
++.+.|.
T Consensus 119 g~~l~V~ 125 (143)
T 3egn_A 119 GKPMVVQ 125 (143)
T ss_dssp TEECEEE
T ss_pred CcEEEEE
Confidence 7777776
No 318
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.20 E-value=5.5e-11 Score=100.02 Aligned_cols=59 Identities=20% Similarity=0.381 Sum_probs=54.1
Q ss_pred CCCCceeEeccccC-cCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 115 LEPGKTIFVGALHG-RLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 115 ~d~~ktIFVGNLP~-~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+.++|||+|||. .+++++|+++| +.||.|..+.| +||||||+|.+.++|.+||+..+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F-~~~G~v~~v~i-------~~g~afV~f~~~~~A~~Ai~~l~ 78 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIF-SPYGHIMQINI-------KNAFGFIQFDNPQSVRDAIEXES 78 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHH-GGGSCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHH-HhcCCEEEEEE-------eCCEEEEEECCHHHHHHHHHHcC
Confidence 34578999999998 99999999999 99999999988 38999999999999999999755
No 319
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.19 E-value=5.2e-11 Score=100.34 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=55.7
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..|.|. +|||||+|.+.++|.+||+..+ .++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F-~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAF-SQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHH-HHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccC
Confidence 3567899999999999999999999 999999999886 5799999999999999999754 4444
No 320
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.19 E-value=1e-11 Score=102.77 Aligned_cols=67 Identities=16% Similarity=0.329 Sum_probs=58.8
Q ss_pred CCCceeEeccccCcCCHHHHH----HHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALY----NVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLr----eiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+.++|||+|||..+|+++|+ ++| +.||.|..+.|.. ++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f-~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIF-SRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFY 77 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHH-GGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHH-HhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 457899999999999999999 999 9999999998863 56789999999999999999999754 4443
No 321
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=3.3e-11 Score=100.53 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=55.7
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
...++|||+|||..+|+++|+++| +.||.|. +.|.. +.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F-~~~G~v~-~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRAL-RELGSVP-LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLG 82 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHH-HHTTCCC-SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSS
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHH-HhcCCEE-EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 446899999999999999999999 9999996 56665 3689999999999999999998754 4443
No 322
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.19 E-value=2.8e-11 Score=99.41 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=55.2
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..++|||+|||..+|+++|+++| +.| .|..+.|+ .+||||||+|.+.++|.+||+..+ .++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F-~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 66 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLL-KDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFR 66 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHT-CSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-hhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 35789999999999999999999 899 99999986 489999999999999999999765 4443
No 323
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.18 E-value=4.1e-11 Score=99.93 Aligned_cols=63 Identities=21% Similarity=0.383 Sum_probs=54.8
Q ss_pred CCCCceeEeccccC-cCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHG-RLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~-~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||. .+|+++|+++| +.||.|..+.| +||||||+|.+.++|.+||+..+ ..+.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F-~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIF-SPYGHIMQINI-------KNAFGFIQFDNPQSVRDAIECESQEMNF 71 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHH-TTTCCCCEEEE-------ETTEEEEEESCHHHHHHHHHHHTCSSCB
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHH-HhcCCEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 35678999999998 99999999999 99999999988 37999999999999999999754 3443
No 324
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=3.7e-11 Score=99.09 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=58.2
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccccee
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEV 96 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQV 96 (534)
.+...++|||+|||+++|+++|+++|++||+|..+.+++ +||||+| +. +|++|++. ....+.++.+.|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~---------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK---------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS---------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC---------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 345568999999999999999999999999999988874 4999999 55 88888864 666777777777
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 77 ~ 77 (92)
T 2dgt_A 77 Q 77 (92)
T ss_dssp E
T ss_pred E
Confidence 6
No 325
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=6.5e-11 Score=97.95 Aligned_cols=71 Identities=14% Similarity=-0.025 Sum_probs=59.8
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhccCCeeEE-eecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceec
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVE-WPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVV 97 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v-~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVr 97 (534)
...++|||||||+++|+++|+++|++||+|..+ .+++++.++ .|||+| ++ +|++|++ +.+..+.++.+.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~-----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA-----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE-----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC-----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 346899999999999999999999999999999 588876644 499999 55 8888887 47777778877776
No 326
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=9e-11 Score=97.32 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=53.7
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCCHHHHHHHHHhcCceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d~EsA~kAIea~~veIk 185 (534)
...++|||+|||..+|+++|+++| +.||.|..| ..|+ ++. ||||+|.+.++|.+||+.....+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F-~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~ 70 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYF-LAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLG 70 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHG-GGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHH-HhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEEC
Confidence 345799999999999999999999 999999987 4444 554 999999999999999993334444
No 327
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.17 E-value=4.9e-11 Score=96.60 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=55.4
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcC----C-------CeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ce
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLF----G-------DVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IE 183 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~F----G-------~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-ve 183 (534)
.+.++|||+|||..+|+++|+++| +.| | .|..+.+.. .||||||+|.+.++|.+|| ..+ ..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~~~~~g~~~~~~~~v~~~~~~~-----~kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFF-NAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHH-HHHHHHTTCCSSSSCSEEEEEECS-----SSSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HHHhhhcccccCCCCcceEEEecC-----CCcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356899999999999999999999 899 8 999999987 4899999999999999999 544 44
Q ss_pred ee
Q psy3698 184 VK 185 (534)
Q Consensus 184 Ik 185 (534)
+.
T Consensus 77 ~~ 78 (87)
T 2hzc_A 77 FQ 78 (87)
T ss_dssp ET
T ss_pred EC
Confidence 44
No 328
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.17 E-value=2e-11 Score=100.31 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=56.3
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCccccceec
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEVV 97 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQVr 97 (534)
..++|||||||+++||++|+++|++| +|..+.+. ++||||||+| ++ +|++|++ +.+..+.++.+.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 73 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQ 73 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 35899999999999999999999999 89887773 4689999999 55 8888887 46666777777765
No 329
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.3e-10 Score=97.00 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=55.2
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcC--CCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLF--GDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~F--G~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.| |.|..+.+ +||||||+|.+.++|.+||+..+ ..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g~g~v~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEF-NNIKPGAVERVKK-------IRDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHH-HTTSTTCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHH-HhcCCcceEEEEE-------eCCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4567899999999999999999999 999 99999876 47899999999999999999765 4443
No 330
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.16 E-value=4.2e-11 Score=103.23 Aligned_cols=59 Identities=14% Similarity=0.065 Sum_probs=54.5
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..++|||+|||..+|+++|+++| +.||.|..|.|.. +||||||+|.+.++|.+||+..+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F-~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~ 67 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETF-SRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLA 67 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHH-HTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhC
Confidence 35789999999999999999999 9999999998875 78999999999999999999865
No 331
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.2e-10 Score=96.02 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=55.6
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..+.|. ++||||+|.+.++|.+||+..+ .++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKF-EEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHH-HTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 3567899999999999999999999 999999999986 4599999999999999998755 4444
No 332
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=2.9e-11 Score=99.75 Aligned_cols=63 Identities=14% Similarity=0.128 Sum_probs=53.8
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCC-eEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC--ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGD-VVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF--IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~-Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~--veIk 185 (534)
.+.++|||+|||..+|+++|+++| +.||. |..+.+ . ++|||||+|.+.++|.+||+..+ .++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~vv~~~~~-~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 71 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLF-GDRKLPLAGQVL-L-----KSGYAFVDYPDQNWAIRAIETLSGKVELH 71 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHH-HHTTCCCSSCEE-E-----ETTEEEECCSCHHHHHHHHHHHTTTCEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HHcCCceEEEEE-c-----CCCEEEEEECCHHHHHHHHHHccCCeeEC
Confidence 456899999999999999999999 99999 555544 2 58999999999999999999765 4554
No 333
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.15 E-value=8.1e-11 Score=101.15 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=55.8
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+.++|||+|||..+|+++|+++| +.||.|..+.|. ||||||+|.+.++|.+||+..+ ..+.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F-~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIF-GPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHH-TTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHH-HhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456899999999999999999999 999999999987 7999999999999999999754 4443
No 334
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=1.3e-10 Score=95.51 Aligned_cols=63 Identities=22% Similarity=0.195 Sum_probs=55.4
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|||..+|+++|+++| +.||.|..+.|. +|||||+|.+.++|.+||+..+ ..+.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~ 69 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLF-ERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVK 69 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHH-HHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3456899999999999999999999 999999999986 4599999999999999999755 4444
No 335
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.14 E-value=7.2e-11 Score=100.58 Aligned_cols=62 Identities=13% Similarity=0.255 Sum_probs=55.1
Q ss_pred CCCceeEeccccCc-CCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGR-LTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~-~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
...++|||+|||.. +|+++|+++| +.||.|..+.| ++|||||+|.+.++|.+||+..+ ..+.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F-~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 88 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIF-SKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLA 88 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHH-GGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHH-HhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34589999999999 9999999999 99999999988 68999999999999999998755 4444
No 336
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.3e-10 Score=96.96 Aligned_cols=70 Identities=16% Similarity=0.070 Sum_probs=57.3
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
..+...++|||+|| ++||++|+++|++||+|..+.+. ++||||||+| +. +|++||+. ....+.++.+.
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556789999996 99999999999999999998873 5679999999 55 88888864 66666777777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 81 v~ 82 (97)
T 1x5p_A 81 VN 82 (97)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 337
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.13 E-value=4.3e-11 Score=109.02 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=60.2
Q ss_pred ceeEeccc----cCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCCceEEEEEeCC----H-HH---HHHHHH--h-cCc
Q psy3698 119 KTIFVGAL----HGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYPIGSGRITFGS----T-RA---YSDAIR--A-AFI 182 (534)
Q Consensus 119 ktIFVGNL----P~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~pKGfGFVtF~d----~-Es---A~kAIe--a-~~v 182 (534)
.+|||||| |+.+++++|+++| +.||+|..+.+..|+ ||.|+|||||+|.+ . ++ |.+||. + ...
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~F-s~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYF-KKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHH-HTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 57999999 9999999999999 899999999999999 99999999999996 3 22 788877 3 234
Q ss_pred eeeccceeeeeeecc
Q psy3698 183 EVKSGRICKKLQIDP 197 (534)
Q Consensus 183 eIk~~k~~KrVeIkP 197 (534)
.|.+.. -+|++++
T Consensus 82 ~I~Gr~--irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFK--FEVILNK 94 (136)
T ss_dssp EETTEE--EEEEECC
T ss_pred eecCcE--EEEEECc
Confidence 444433 2455543
No 338
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.13 E-value=3.2e-11 Score=107.29 Aligned_cols=69 Identities=20% Similarity=0.208 Sum_probs=57.9
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEE--E----EecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYA--G----IDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V--~----I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+..+|||+|||..+|+++|+++| +.||.|..+ . |....++.++|||||+|.+.++|.+||+..+ ..+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F-~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIF-GRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHH-GGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 456899999999999999999999 999999875 1 2222488999999999999999999999765 4443
No 339
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=2.4e-10 Score=95.28 Aligned_cols=63 Identities=19% Similarity=0.324 Sum_probs=54.9
Q ss_pred CCCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
..+.++|||+|| .+|+++|+++| +.||.|..|.|. .+||||||+|.+.++|.+||+..+ ..+.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F-~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 75 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAF-SPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVE 75 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHH-TTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHH-hhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 345689999996 89999999999 999999999985 489999999999999999998755 4443
No 340
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=9.6e-11 Score=103.66 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=48.8
Q ss_pred cCeEEE--eCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCC
Q psy3698 24 SNKIFI--GGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEG 88 (534)
Q Consensus 24 SrKVFV--GNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~ 88 (534)
+++||| |||++++||++|+++|++||+|..++++. .||||||+| ++ +|++|++. +++.
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-------~rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-------NKPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-------TCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 578999 88999999999999999999999887754 268999999 55 88888874 4443
No 341
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=2.8e-10 Score=94.11 Aligned_cols=66 Identities=14% Similarity=0.205 Sum_probs=55.8
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEE-EEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYA-GIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V-~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
...++|||+|||..+|+++|+++| +.||.|..+ .|..|+. .|.|||+|.+.++|.+||+..+ ..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~ 80 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLL-VQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLE 80 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHH-HHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHH-HhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 346889999999999999999999 999999999 4888762 2339999999999999998755 4443
No 342
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.06 E-value=2.3e-10 Score=107.30 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=57.6
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcc--ccce
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLC--GRVE 95 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~--k~VQ 95 (534)
+....+|||+||++++||++|+++|++||+|..+++..+ +++|||||+| ++ +|++|++. .+..+.+ +.+.
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 334578999999999999999999999999999988643 3579999999 55 78878775 6666643 6666
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 118 V~ 119 (164)
T 1sjr_A 118 ID 119 (164)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 343
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.03 E-value=8.2e-10 Score=99.82 Aligned_cols=64 Identities=17% Similarity=0.096 Sum_probs=56.0
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceE-EEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGS-GRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGf-GFVtF~d~EsA~kAIea~~-veIk 185 (534)
+.-.|||+||++.+|+++|+++| ++||.|..|.|..+ .||| |||+|.+.++|.+||+..+ .++.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lF-s~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~ 92 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIF-SKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIY 92 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHH-TTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHH-hCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeec
Confidence 34678999999999999999999 99999999988763 4788 9999999999999999876 4443
No 344
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.03 E-value=5.4e-10 Score=104.77 Aligned_cols=61 Identities=18% Similarity=0.092 Sum_probs=55.1
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
...+|||+||++.+|+++|+++| ++||.|..|.|..+ .++|||||+|.+.++|.+||+..+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~F-s~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~Ln 105 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIF-SKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLD 105 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHH-HHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHST
T ss_pred ceEEEEEeCcCCCCCHHHHHHHH-HhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhC
Confidence 34679999999999999999999 99999999998653 368999999999999999999866
No 345
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.03 E-value=4.5e-10 Score=98.73 Aligned_cols=70 Identities=16% Similarity=0.070 Sum_probs=57.2
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
..+...++|||||| ++||++|+++|++||+|..+.+. ++||||||+| +. +|++|++. ....+.++.+.
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 104 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 104 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34556799999995 79999999999999999988874 4579999999 55 88888864 66677777777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
|.
T Consensus 105 V~ 106 (121)
T 2bz2_A 105 VN 106 (121)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 346
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.02 E-value=4.1e-10 Score=107.17 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=55.3
Q ss_pred CCceeEecccc-CcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 117 PGKTIFVGALH-GRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 117 ~~ktIFVGNLP-~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
+..+|||+||| ..+|+++|+++| +.||.|..|+|+.| .||||||+|.+.++|.+||+..+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F-~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~ln 63 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVF-CLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLN 63 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHH-TTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHH-HhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhC
Confidence 35789999999 899999999999 99999999999875 37999999999999999999765
No 347
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.99 E-value=4.9e-10 Score=110.71 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=59.0
Q ss_pred CccCeEEEeCCCCCC---------CHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCC
Q psy3698 22 ILSNKIFIGGVPWDT---------PEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGN 89 (534)
Q Consensus 22 ~~SrKVFVGNLP~di---------TEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i 89 (534)
...++|||||||.++ ||++|+++|++||+|..+.++. +||||||+| .+ +|++|++. .+..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 356899999999998 7999999999999999998875 379999999 55 88888764 66666
Q ss_pred ------------ccccceecccccCC
Q psy3698 90 ------------LCGRVEVVPWAISD 103 (534)
Q Consensus 90 ------------~~k~VQVrPw~lsd 103 (534)
.++.+.|+ |...+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~-wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVK-WANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEE-ECC--
T ss_pred eccccccccccCCCCEEEEE-EccCC
Confidence 56677776 55443
No 348
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.98 E-value=8.8e-10 Score=95.11 Aligned_cols=74 Identities=8% Similarity=-0.093 Sum_probs=60.1
Q ss_pred cCeEEEeCCCC-----CCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccce
Q psy3698 24 SNKIFIGGVPW-----DTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVE 95 (534)
Q Consensus 24 SrKVFVGNLP~-----diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQ 95 (534)
++.|+|.||.. +-++++|++.|++||+|..++|++++.+..++||||||+| +. +|++|++. +++.+.+|.+.
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~ 87 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVK 87 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEE
Confidence 68899999973 3479999999999999999999988654337899999999 55 77777764 77777888777
Q ss_pred ec
Q psy3698 96 VV 97 (534)
Q Consensus 96 Vr 97 (534)
+.
T Consensus 88 v~ 89 (105)
T 2pe8_A 88 AC 89 (105)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 349
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.97 E-value=1.6e-09 Score=96.89 Aligned_cols=57 Identities=21% Similarity=0.135 Sum_probs=51.5
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceE-EEEEeCCHHHHHHHHHhcC
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGS-GRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGf-GFVtF~d~EsA~kAIea~~ 181 (534)
..|||+||++.+|+++|+++| ++||.|..|.|.. + .|| |||+|.+.++|.+||++++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~F-s~yG~V~~v~i~~-~----~Gf~aFVef~~~~~A~~A~~~Ln 83 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVC-NPVGKVQRIVIFK-R----NGIQAMVEFESVLCAQKAKAALN 83 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHH-TTTSCEEEEEEEE-S----SSEEEEEEESSHHHHHHHHHHHT
T ss_pred EEEEEcCcCCCCCHHHHHHHH-HhcCCEEEEEEEe-C----CCCEEEEEECCHHHHHHHHHHhC
Confidence 457899999999999999999 9999999999865 2 386 9999999999999999866
No 350
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.97 E-value=6.8e-10 Score=100.34 Aligned_cols=71 Identities=11% Similarity=0.044 Sum_probs=54.4
Q ss_pred CCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcE-EEEEe-hH-HHHHHHhh-cCCCCcc--cc
Q psy3698 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAI-SLDVI-SE-LVLILGQW-ATEGNLC--GR 93 (534)
Q Consensus 20 ~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGY-AFVtF-sE-sAeaALq~-ssr~i~~--k~ 93 (534)
.+..--+|||+||++.+||++|+++|++||+|..+++.++ .||| |||+| +. +|++|++. .+..+.+ +.
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~------~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE------TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC------CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 3344568999999999999999999999999999988752 3688 99999 55 77777775 5555543 44
Q ss_pred cee
Q psy3698 94 VEV 96 (534)
Q Consensus 94 VQV 96 (534)
+.+
T Consensus 98 LrI 100 (130)
T 3zzy_A 98 LRI 100 (130)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 351
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.96 E-value=8.1e-10 Score=105.38 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=56.8
Q ss_pred CCCCceeEeccccC-cCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 115 LEPGKTIFVGALHG-RLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 115 ~d~~ktIFVGNLP~-~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+.++|||+|||. .+|+++|+++| +.||.|..|.|..|+ +|||||+|.+.++|.+||+..+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F-~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~ 93 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILF-GVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLN 93 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHH-HHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHH-HhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhC
Confidence 35678999999999 99999999999 999999999999875 8999999999999999998644
No 352
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.96 E-value=1.6e-09 Score=96.84 Aligned_cols=70 Identities=11% Similarity=-0.057 Sum_probs=54.1
Q ss_pred CCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcE-EEEEe-hH-HHHHHHhh-cCCCCcc--ccc
Q psy3698 21 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAI-SLDVI-SE-LVLILGQW-ATEGNLC--GRV 94 (534)
Q Consensus 21 p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGY-AFVtF-sE-sAeaALq~-ssr~i~~--k~V 94 (534)
+....+||||||++.+||++|+++|++||+|..+++.+. +|| |||+| ++ +|++|++. .+..+.+ +.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 334457899999999999999999999999999988642 276 99999 55 77777764 6666654 344
Q ss_pred eec
Q psy3698 95 EVV 97 (534)
Q Consensus 95 QVr 97 (534)
.|.
T Consensus 95 ~V~ 97 (124)
T 2e5i_A 95 KIE 97 (124)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.95 E-value=1.2e-09 Score=96.02 Aligned_cols=62 Identities=19% Similarity=0.341 Sum_probs=54.2
Q ss_pred CCCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 116 d~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.+..+|||+|| ++|+++|+++| +.||.|..|.|. .+||||||+|.+.++|.+||+..+ .++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F-~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 99 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAF-SPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVE 99 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHH-STTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHH-HccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45689999996 69999999999 999999999986 389999999999999999998754 4443
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.95 E-value=8.6e-10 Score=108.95 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=55.7
Q ss_pred CCCceeEeccccCcC---------CHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKTIFVGALHGRL---------TAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~ktIFVGNLP~~~---------TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
...++||||||+..+ ++++|+++| ++||.|+.|.|+. +||||||+|.+.++|.+||++++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F-~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~ 200 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVF-SRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMS 200 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHH-HTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHH-HccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhC
Confidence 456899999999998 799999999 9999999999987 69999999999999999998866
No 355
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.94 E-value=2.4e-09 Score=92.32 Aligned_cols=66 Identities=12% Similarity=-0.017 Sum_probs=57.3
Q ss_pred CCCceeEeccccC-----cCCHHHHHHHhhhcCCCeEEEEEecCC--CCCCceEEEEEeCCHHHHHHHHHhcCc
Q psy3698 116 EPGKTIFVGALHG-----RLTAQALYNVMNDLFGDVVYAGIDTDK--HKYPIGSGRITFGSTRAYSDAIRAAFI 182 (534)
Q Consensus 116 d~~ktIFVGNLP~-----~~TeedLreiF~s~FG~Vv~V~I~~Dk--TG~pKGfGFVtF~d~EsA~kAIea~~v 182 (534)
.+.++|+|.||-. +-++++|++.| ++||.|..|.|..|+ ++.++|||||+|.+.++|.+||++.+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f-~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG 78 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEEC-EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG 78 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHG-GGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHH-HhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC
Confidence 4578999999963 23789999999 999999999999986 478999999999999999999998763
No 356
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=3.3e-09 Score=91.63 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=51.0
Q ss_pred CeEEEeCCCCCCCHHH----HHHHhhcc-CCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHh-hcCCCCcccccee
Q psy3698 25 NKIFIGGVPWDTPEYL----LLTVFSQF-GPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQ-WATEGNLCGRVEV 96 (534)
Q Consensus 25 rKVFVGNLP~diTEee----Lre~FsqF-G~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq-~ssr~i~~k~VQV 96 (534)
..|||+|||+++++++ |+++|++| |+|..+ ++ |+|||+| .. +|++|++ +.+..+.+|++.+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg----G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG----CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT----TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec----CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 3499999999999998 55899999 599886 33 8999999 44 8888886 4777888888877
Q ss_pred c
Q psy3698 97 V 97 (534)
Q Consensus 97 r 97 (534)
.
T Consensus 79 ~ 79 (96)
T 2diu_A 79 S 79 (96)
T ss_dssp E
T ss_pred E
Confidence 5
No 357
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.90 E-value=1.8e-09 Score=111.75 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=55.5
Q ss_pred CCCCceeEecc--ccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 115 LEPGKTIFVGA--LHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 115 ~d~~ktIFVGN--LP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+.++||||| |+..+|+++|+++| ++||.|..|.|+. .||||||+|.+.++|.+||++.+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F-~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~ln 77 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVL-EKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLN 77 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHH-HTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHH-HhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhC
Confidence 45678999999 68999999999999 9999999987765 68999999999999999999977
No 358
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=3.4e-09 Score=91.51 Aligned_cols=56 Identities=18% Similarity=0.146 Sum_probs=48.7
Q ss_pred CCCce-eEeccccCcCCHHH----HHHHhhhcC-CCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 116 EPGKT-IFVGALHGRLTAQA----LYNVMNDLF-GDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 116 d~~kt-IFVGNLP~~~Teed----LreiF~s~F-G~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.+..| |||+|||..+++++ |+++| +.| |+|..| ++ |+|||.|.+.++|.+||+.+.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF-~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~ 67 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLS-DNCGGKVLSI------TG---CSAILRFINQDSAERAQKRME 67 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHH-HTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHT
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHH-HHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhc
Confidence 45666 99999999999988 55899 999 599988 33 999999999999999998865
No 359
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.89 E-value=1e-09 Score=101.00 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=54.7
Q ss_pred CceeEeccccC-cCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 118 GKTIFVGALHG-RLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 118 ~ktIFVGNLP~-~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.++|||+|||. .+|+++|+++| +.||.|..+.|..|+ +|||||+|.+.++|.+||+..+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F-~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~ 62 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILF-GVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLN 62 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHH-HTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHT
T ss_pred CcEEEEeCCCcccCCHHHHHHHH-HhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhC
Confidence 47899999999 99999999999 999999999998875 8899999999999999998644
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.79 E-value=6.6e-09 Score=89.22 Aligned_cols=60 Identities=10% Similarity=0.143 Sum_probs=52.9
Q ss_pred EeccccCcCCHHHHHHHhh-----------hcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 122 FVGALHGRLTAQALYNVMN-----------DLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 122 FVGNLP~~~TeedLreiF~-----------s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
.++||+..+++++|++.|+ ++||.|..|.|..|+.+++||||||+|.+.++|.+||++.+
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~ln 89 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN 89 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHT
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHC
Confidence 3788999999998887762 68999999999998888999999999999999999999866
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=2e-08 Score=86.20 Aligned_cols=63 Identities=14% Similarity=0.261 Sum_probs=52.7
Q ss_pred CCCCceeEeccccCcCC-----------HHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 115 LEPGKTIFVGALHGRLT-----------AQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 115 ~d~~ktIFVGNLP~~~T-----------eedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+.++|+|.||....+ +++|+++| ++||.|..|.| .|+. ++|||||+|.+.++|.+||+..+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f-~~~G~v~~v~i-~~~~--~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVEC-SKFGQIRKLLL-FDRH--PDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHG-GGTSCCSEEEE-ETTC--TTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHH-HccCCEeEEEE-ecCC--CCEEEEEEECCHHHHHHHHHHcC
Confidence 35678999999944332 58999999 99999999966 5543 89999999999999999998866
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.72 E-value=2.6e-09 Score=91.82 Aligned_cols=67 Identities=6% Similarity=-0.152 Sum_probs=54.5
Q ss_pred EeCCCCCCCHHHHHHHh------------hccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcccc
Q psy3698 29 IGGVPWDTPEYLLLTVF------------SQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGR 93 (534)
Q Consensus 29 VGNLP~diTEeeLre~F------------sqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~ 93 (534)
++|||+++|+++|++.| ++||+|..++++++.. + ++||||||+| ++ +|++|++. +++.+.+|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~-~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-D-HLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-S-SSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-C-CccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 67899999999888777 9999999999998865 5 8999999999 55 88888874 667777776
Q ss_pred ceec
Q psy3698 94 VEVV 97 (534)
Q Consensus 94 VQVr 97 (534)
+.+.
T Consensus 98 i~v~ 101 (104)
T 1jmt_A 98 IHAE 101 (104)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 6553
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=3.4e-08 Score=84.81 Aligned_cols=75 Identities=11% Similarity=-0.088 Sum_probs=58.5
Q ss_pred CCCCccCeEEEeCCCCCCC-----------HHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-
Q psy3698 19 SDEILSNKIFIGGVPWDTP-----------EYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW- 84 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diT-----------EeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~- 84 (534)
..+..++.|+|.||....+ |++|+++|++||+|..+.| .++ .+||||||+| ++ +|++|++.
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~----~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR----HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT----CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC----CCCEEEEEEECCHHHHHHHHHHc
Confidence 4566789999999944432 6899999999999999866 443 4689999999 55 88888864
Q ss_pred cCCCCccccceecc
Q psy3698 85 ATEGNLCGRVEVVP 98 (534)
Q Consensus 85 ssr~i~~k~VQVrP 98 (534)
.+..+.++.+.+..
T Consensus 85 ng~~~~gr~l~v~~ 98 (112)
T 2dit_A 85 DGRWFGGRQITAQA 98 (112)
T ss_dssp TTCEETTEECEEEE
T ss_pred CCCEECCcEEEEEE
Confidence 66777778877763
No 364
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.70 E-value=1.5e-08 Score=104.91 Aligned_cols=55 Identities=13% Similarity=0.024 Sum_probs=47.1
Q ss_pred ccCeEEEeC--CCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh
Q psy3698 23 LSNKIFIGG--VPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW 84 (534)
Q Consensus 23 ~SrKVFVGN--LP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ 84 (534)
-+++||||| |++.+||++|+++|++||+|..+++.. +||||||+| ++ +|++|++.
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-------~kgfaFV~f~~~~~A~~Ai~~ 75 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-------NKPYSFARYRTTEESKRAYVT 75 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-------TCSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-------CCCEEEEEECCHHHHHHHHHH
Confidence 457899999 689999999999999999998876643 479999999 55 88888875
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.67 E-value=3.5e-08 Score=84.94 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=55.2
Q ss_pred CCceeEeccc--cCcCC--------HHHHHHHhhhcCCCeEEEEEecCCC---CCCceEEEEEeCCHHHHHHHHHhcCce
Q psy3698 117 PGKTIFVGAL--HGRLT--------AQALYNVMNDLFGDVVYAGIDTDKH---KYPIGSGRITFGSTRAYSDAIRAAFIE 183 (534)
Q Consensus 117 ~~ktIFVGNL--P~~~T--------eedLreiF~s~FG~Vv~V~I~~DkT---G~pKGfGFVtF~d~EsA~kAIea~~ve 183 (534)
+.+.|.+.|+ |..+. +++|++.| ++||.|..|.|++|+. +.++|+|||+|.+.++|.+||++.+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f-~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDEC-SKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHH-HTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHH-HccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 5677888887 44443 46899999 9999999999999872 478999999999999999999987733
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=5.9e-08 Score=83.43 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=44.3
Q ss_pred CcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhc
Q psy3698 128 GRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAA 180 (534)
Q Consensus 128 ~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~ 180 (534)
..+|+++|+++| ++||.|..|.|. +++||||||+|.++++|.+||+..
T Consensus 27 ~~~te~~L~~~F-~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~ 74 (100)
T 2d9o_A 27 GGYSKDVLLRLL-QKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNE 74 (100)
T ss_dssp CSCCHHHHHHHH-HTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTC
T ss_pred CCCCHHHHHHHH-HhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhc
Confidence 568999999999 999999999987 468999999999999999999983
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=8.7e-08 Score=82.37 Aligned_cols=67 Identities=10% Similarity=0.016 Sum_probs=51.4
Q ss_pred cCeEEEeCCC-------CCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccc
Q psy3698 24 SNKIFIGGVP-------WDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRV 94 (534)
Q Consensus 24 SrKVFVGNLP-------~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~V 94 (534)
.++|-|.-.. .++||++|+++|++||+|..+.+++ ++||||||+| .+ +|++|++. ...+.++.+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~------~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS------KKPGTAVVEFATVKAAELAVQN-EVGLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES------SSSSEEEEEESCHHHHHHHHHT-CCBCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc------CCCCEEEEEECCHHHHHHHHHh-cCCCCCCeE
Confidence 4566666554 4589999999999999999998873 6789999999 55 88889886 233445666
Q ss_pred eec
Q psy3698 95 EVV 97 (534)
Q Consensus 95 QVr 97 (534)
.|.
T Consensus 83 ~V~ 85 (100)
T 2d9o_A 83 KIS 85 (100)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 368
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.62 E-value=5.6e-08 Score=83.66 Aligned_cols=74 Identities=11% Similarity=-0.137 Sum_probs=58.5
Q ss_pred cCeEEEeCC--CCCCC--------HHHHHHHhhccCCeeEEeecCCCCCC-CCCCcEEEEEe-hH-HHHHHHhh-cCCCC
Q psy3698 24 SNKIFIGGV--PWDTP--------EYLLLTVFSQFGPVKVEWPQGTPESP-TAPKAISLDVI-SE-LVLILGQW-ATEGN 89 (534)
Q Consensus 24 SrKVFVGNL--P~diT--------EeeLre~FsqFG~V~~v~~~rD~~Tg-~rsRGYAFVtF-sE-sAeaALq~-ssr~i 89 (534)
++-|.|.|+ |.++. +++|++.|++||+|..+.|++++.+. .+++|||||+| +. +|++|++. +++.+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 466899998 55554 47999999999999999999987542 16799999999 55 77777764 77777
Q ss_pred ccccceec
Q psy3698 90 LCGRVEVV 97 (534)
Q Consensus 90 ~~k~VQVr 97 (534)
.+|.+.+.
T Consensus 85 ~GR~i~v~ 92 (105)
T 3v4m_A 85 ANRVVVTK 92 (105)
T ss_dssp TTEECEEE
T ss_pred CCCEEEEE
Confidence 88877775
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.61 E-value=6.4e-08 Score=85.47 Aligned_cols=66 Identities=15% Similarity=0.065 Sum_probs=54.8
Q ss_pred CCceeEeccc--cCcC---CHHHHHHHhhhcCCCeEEEEEecCC-----CCCCceEEEEEeCCHHHHHHHHHhcCce
Q psy3698 117 PGKTIFVGAL--HGRL---TAQALYNVMNDLFGDVVYAGIDTDK-----HKYPIGSGRITFGSTRAYSDAIRAAFIE 183 (534)
Q Consensus 117 ~~ktIFVGNL--P~~~---TeedLreiF~s~FG~Vv~V~I~~Dk-----TG~pKGfGFVtF~d~EsA~kAIea~~ve 183 (534)
+.++|++.|+ |.++ -+++|++.| ++||.|..|.|..|+ ++.++|+|||+|.+.++|.+||++.+..
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef-~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr 94 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR 94 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHH-TTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHH-hccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC
Confidence 5678888888 3222 368999999 899999999999885 3567899999999999999999987733
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.53 E-value=5.4e-08 Score=85.91 Aligned_cols=74 Identities=11% Similarity=-0.120 Sum_probs=58.3
Q ss_pred cCeEEEeCCC--CC---CCHHHHHHHhhccCCeeEEeecCCCC----CCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCcc
Q psy3698 24 SNKIFIGGVP--WD---TPEYLLLTVFSQFGPVKVEWPQGTPE----SPTAPKAISLDVI-SE-LVLILGQW-ATEGNLC 91 (534)
Q Consensus 24 SrKVFVGNLP--~d---iTEeeLre~FsqFG~V~~v~~~rD~~----Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~ 91 (534)
++.|+|.|+- .+ --+++|++.|++||+|..++|++++. ++ +++|||||+| +. +|++|++. +++.+.+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~-~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDA-EIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTC-EEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCC-cceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5789999983 22 23789999999999999999998764 34 6789999999 55 77777765 7777777
Q ss_pred ccceecc
Q psy3698 92 GRVEVVP 98 (534)
Q Consensus 92 k~VQVrP 98 (534)
|.+.+.-
T Consensus 99 R~i~v~~ 105 (118)
T 3ue2_A 99 RKVVAEV 105 (118)
T ss_dssp EECEEEE
T ss_pred cEEEEEE
Confidence 8777753
No 371
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=5.9e-07 Score=80.36 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=60.0
Q ss_pred CCCCCCCCceeEeccccCc-CCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCC-HHHHHHHHHhc---Cceee
Q psy3698 111 HSTKLEPGKTIFVGALHGR-LTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGS-TRAYSDAIRAA---FIEVK 185 (534)
Q Consensus 111 ~s~~~d~~ktIFVGNLP~~-~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d-~EsA~kAIea~---~veIk 185 (534)
.+....+...|||+||+.. +++++|+++| +.||.|.+|.+..|.. .|||.|.+ .++|.+||++. .++|.
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F-~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILF-SNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHT-CSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHH-HhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 4455667889999999999 9999999999 8999999999998764 59999999 89999999986 35555
Q ss_pred c
Q psy3698 186 S 186 (534)
Q Consensus 186 ~ 186 (534)
.
T Consensus 85 g 85 (121)
T 1owx_A 85 N 85 (121)
T ss_dssp S
T ss_pred C
Confidence 4
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=1.3e-06 Score=78.24 Aligned_cols=55 Identities=16% Similarity=-0.031 Sum_probs=48.1
Q ss_pred ccCeEEEeCCCCC-CCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-h-H-HHHHHHhh
Q psy3698 23 LSNKIFIGGVPWD-TPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-S-E-LVLILGQW 84 (534)
Q Consensus 23 ~SrKVFVGNLP~d-iTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-s-E-sAeaALq~ 84 (534)
..+-|||+||+++ +++++|+++|++||+|..++++++.. .|||.| . + +|.+|+..
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-------tgfVrf~~~~~~A~~av~~ 75 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-------EGIILFKEKAKEALGKAKD 75 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-------EEEEEESSCHHHHHHHHHH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-------EEEEEECCChHHHHHHHHH
Confidence 3478999999999 99999999999999999999998765 489999 7 6 77777764
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.14 E-value=5.4e-06 Score=72.72 Aligned_cols=71 Identities=4% Similarity=-0.119 Sum_probs=53.8
Q ss_pred CccCeEEEeCCCCCCC----------HHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh-cCCC
Q psy3698 22 ILSNKIFIGGVPWDTP----------EYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW-ATEG 88 (534)
Q Consensus 22 ~~SrKVFVGNLP~diT----------EeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~ 88 (534)
+-++-|.+.|+=-.-. +++|++.|++||+|..+.+.++. ++|||||+| +. +|++|++. +++.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3456788888743222 36889999999999999987752 489999999 55 78888764 7777
Q ss_pred Cccccceec
Q psy3698 89 NLCGRVEVV 97 (534)
Q Consensus 89 i~~k~VQVr 97 (534)
+.+|.+.+.
T Consensus 80 f~GR~i~v~ 88 (114)
T 3s6e_A 80 FAGKMITAA 88 (114)
T ss_dssp ETTEECEEE
T ss_pred ECCEEEEEE
Confidence 777777765
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.12 E-value=2.7e-06 Score=74.64 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=42.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCce
Q psy3698 132 AQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIE 183 (534)
Q Consensus 132 eedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ve 183 (534)
+++|++.| ++||.|..|.|+.+. ++|||||+|.+.++|.+||+.++..
T Consensus 31 ~edl~~~f-~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 31 KDDVIEEC-NKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp HHHHHHHH-TTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHH-hccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45789999 999999999997764 6999999999999999999987733
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.83 E-value=4e-05 Score=65.55 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=50.1
Q ss_pred CCceeEecccc----CcCCH----HHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceeec
Q psy3698 117 PGKTIFVGALH----GRLTA----QALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVKS 186 (534)
Q Consensus 117 ~~ktIFVGNLP----~~~Te----edLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk~ 186 (534)
+..||+|.-++ ...-+ .+|.+.| ..||.|+.++|..|+ +||+|.+.++|.+||+....++.+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F-~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~mnG~~v~G 75 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQF-ASFGEVILIRFVEDK-------MWVTFLEGSSALNVLSLNGKELLN 75 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHH-HTTCCEEEEEECSSS-------EEEEESSHHHHHHGGGGTTCEETT
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHH-HhCCCeEEEEEecCC-------EEEEECChHHHHHHHhcCCeEeCC
Confidence 45788888776 23334 5788999 899999999999965 899999999999999855566654
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.67 E-value=6.7e-05 Score=70.92 Aligned_cols=51 Identities=20% Similarity=0.044 Sum_probs=45.1
Q ss_pred CCHHHHHHHhhhcCCCeEEEEEecCC-----CCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 130 LTAQALYNVMNDLFGDVVYAGIDTDK-----HKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 130 ~TeedLreiF~s~FG~Vv~V~I~~Dk-----TG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
-.+++|++.| ++||.|..+.|..+. ++.++|++||+|.+.++|.+||+..+
T Consensus 141 e~~~dl~~e~-~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~ 196 (222)
T 3dxb_A 141 DLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 196 (222)
T ss_dssp THHHHHHHHH-TTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc
Confidence 4568899999 899999999997553 55899999999999999999999876
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.66 E-value=6.2e-05 Score=71.16 Aligned_cols=63 Identities=13% Similarity=-0.143 Sum_probs=50.1
Q ss_pred CCCHHHHHHHhhccCCeeEEeecCCC----CCCCCCCcEEEEEe-hH-HHHHHHhh-cCCCCccccceecc
Q psy3698 35 DTPEYLLLTVFSQFGPVKVEWPQGTP----ESPTAPKAISLDVI-SE-LVLILGQW-ATEGNLCGRVEVVP 98 (534)
Q Consensus 35 diTEeeLre~FsqFG~V~~v~~~rD~----~Tg~rsRGYAFVtF-sE-sAeaALq~-ssr~i~~k~VQVrP 98 (534)
+-.+++|++.|++||+|..+.|.++. .++ +++|++||+| ++ +|++|++. +++.+.+|.+.+.-
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~-~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~ 209 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDA-EIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 209 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTC-CEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCc-CceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEE
Confidence 44678999999999999999887443 344 7899999999 65 77777775 78888888887753
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.57 E-value=4.9e-05 Score=65.52 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=51.4
Q ss_pred CCCceeEeccccCc-----CCH----HHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceeec
Q psy3698 116 EPGKTIFVGALHGR-----LTA----QALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVKS 186 (534)
Q Consensus 116 d~~ktIFVGNLP~~-----~Te----edLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk~ 186 (534)
.+..||+|.-++.. .-+ .+|.+.| ..||.|+.++|..|+ +||+|.+.++|.+||+....++.+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F-~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTL-GSYGTIVLVRINQGQ-------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHH-HHHSCCSEEEEETTE-------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHH-HHCCCEEEEEEecCc-------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 35678999888632 322 5688999 889999999999976 999999999999999955566664
Q ss_pred c
Q psy3698 187 G 187 (534)
Q Consensus 187 ~ 187 (534)
.
T Consensus 85 r 85 (95)
T 1ufw_A 85 R 85 (95)
T ss_dssp E
T ss_pred e
Confidence 3
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.50 E-value=0.00014 Score=62.25 Aligned_cols=64 Identities=13% Similarity=0.043 Sum_probs=52.4
Q ss_pred CeEEEeCCC----CCCCH----HHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccc
Q psy3698 25 NKIFIGGVP----WDTPE----YLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRV 94 (534)
Q Consensus 25 rKVFVGNLP----~diTE----eeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~V 94 (534)
.+|+|.-++ ..+-. .+|.+.|++||+|..++++.|+ +||+| .. +|.+||++.+..+.+|.+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~---------~fVtF~d~~sAlaAi~mnG~~v~Gr~L 78 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK---------MWVTFLEGSSALNVLSLNGKELLNRTI 78 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS---------EEEEESSHHHHHHGGGGTTCEETTEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC---------EEEEECChHHHHHHHhcCCeEeCCeEE
Confidence 478888777 23333 6789999999999999998863 79999 55 999999998888888888
Q ss_pred eec
Q psy3698 95 EVV 97 (534)
Q Consensus 95 QVr 97 (534)
+|.
T Consensus 79 kV~ 81 (91)
T 2dnr_A 79 TIA 81 (91)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.14 E-value=0.00026 Score=61.03 Aligned_cols=64 Identities=8% Similarity=-0.022 Sum_probs=52.6
Q ss_pred CeEEEeCCCCC-----CCH----HHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCcccc
Q psy3698 25 NKIFIGGVPWD-----TPE----YLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGR 93 (534)
Q Consensus 25 rKVFVGNLP~d-----iTE----eeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~ 93 (534)
-+|+|.-++.+ +-. .+|.+.|++||+|..+++..|+ +||+| .+ +|.+||++....+.+|.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---------~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---------MLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---------EEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---------EEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 47999988754 222 5689999999999999998874 89999 44 99999999888888888
Q ss_pred ceec
Q psy3698 94 VEVV 97 (534)
Q Consensus 94 VQVr 97 (534)
+.|.
T Consensus 87 L~V~ 90 (95)
T 1ufw_A 87 VKIS 90 (95)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8876
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.75 E-value=0.0063 Score=53.24 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=66.0
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhcc-----CCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCccccce
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQF-----GPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNLCGRVE 95 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqF-----G~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~~k~VQ 95 (534)
..++|.|-|||.++.++.|.-+|+.= |+|..+.... +=|+|+| .. .|+++|+.....+.+.++.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 35789999999999999999999982 5777665433 2589999 44 8999999877788888888
Q ss_pred ecccccCCCCCCCCCCCCCCCCCceeEeccccCcCC
Q psy3698 96 VVPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLT 131 (534)
Q Consensus 96 VrPw~lsds~~~~~~~s~~~d~~ktIFVGNLP~~~T 131 (534)
|.|+...+ ..+|++-+|+..++
T Consensus 78 V~P~~~~~--------------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPRA--------------PARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCCC--------------CCCCCCCSCCCCCC
T ss_pred EEcCCCCC--------------cceEeeecCCCCCC
Confidence 88754322 24578888887764
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.24 E-value=0.019 Score=50.16 Aligned_cols=72 Identities=18% Similarity=0.130 Sum_probs=56.4
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhc----CCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceeeccceeee
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDL----FGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVKSGRICKK 192 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~----FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk~~k~~Kr 192 (534)
..++|.|-|||..+.++.|.-+|+.. =|.|..+.... +-|.|+|.+.+.|++.|++....+.. -+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k~~H~L~~----~~ 75 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQADHELHG----AQ 75 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTCSCCBSSS----SB
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcCCcceecC----eE
Confidence 46889999999999999999999653 25677765532 67899999999999999886656664 35
Q ss_pred eeecccc
Q psy3698 193 LQIDPYL 199 (534)
Q Consensus 193 VeIkPyL 199 (534)
+.|.||.
T Consensus 76 LsV~P~~ 82 (104)
T 2dhx_A 76 LSLRPAP 82 (104)
T ss_dssp CEEEECC
T ss_pred EEEEcCC
Confidence 5577774
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.96 E-value=0.046 Score=48.54 Aligned_cols=67 Identities=6% Similarity=-0.088 Sum_probs=54.2
Q ss_pred CccCeEEEeCCCCCCCHHHHHHHhhcc-----CCeeEEeecCCCCCCCCCCcEEEEEe-hH--HHHHHHhhcCCCCcccc
Q psy3698 22 ILSNKIFIGGVPWDTPEYLLLTVFSQF-----GPVKVEWPQGTPESPTAPKAISLDVI-SE--LVLILGQWATEGNLCGR 93 (534)
Q Consensus 22 ~~SrKVFVGNLP~diTEeeLre~FsqF-----G~V~~v~~~rD~~Tg~rsRGYAFVtF-sE--sAeaALq~ssr~i~~k~ 93 (534)
...++|=+=+||-.++.+.|+.+.+++ |.|+.+.+.-|.. =|+|+| ++ +++++|+..+..+.++.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-------GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-------GAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-------EEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-------ceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 456889999999999999999999999 9998888877643 599999 55 88888887666555544
Q ss_pred ce
Q psy3698 94 VE 95 (534)
Q Consensus 94 VQ 95 (534)
+.
T Consensus 92 Lr 93 (117)
T 2l9w_A 92 IR 93 (117)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 384
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.81 E-value=0.092 Score=45.60 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=42.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW 84 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ 84 (534)
..||+=+.|.++.-.+|.++|+.||-|.+-||-- | -|||.| .. .|..|++.
T Consensus 16 ~HVf~l~FP~ewKt~DI~~lFs~fggv~I~WidD---T------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 16 DHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDD---T------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CSEEEEECCTTCCHHHHHHHHTTTCSCCCEEEET---T------EEEEECSCHHHHHHHHHH
T ss_pred CeEEEEeCChhhhhHHHHHHhhccCCEEEEEEcC---C------eEEEEecCHHHHHHHHHh
Confidence 3577669999999999999999999999888853 2 599999 44 77777774
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.74 E-value=0.13 Score=43.70 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=55.8
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC-CCCC--ceEEEEEeCCHHHHHHHHHhcC----ceeeccceee
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK-HKYP--IGSGRITFGSTRAYSDAIRAAF----IEVKSGRICK 191 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk-TG~p--KGfGFVtF~d~EsA~kAIea~~----veIk~~k~~K 191 (534)
.+|-|.+||+.+|++++.+.+ +....+........+ +.++ -.-|+|.|.+.+++..-.+.-. +.-++....-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l-~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHL-QPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHH-CSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHh-cCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 368999999999999999999 778888777765544 2222 2568999999988877776643 3222233233
Q ss_pred eeeeccc
Q psy3698 192 KLQIDPY 198 (534)
Q Consensus 192 rVeIkPy 198 (534)
.||..||
T Consensus 81 ~VE~AP~ 87 (91)
T 1uw4_A 81 IVEFAPF 87 (91)
T ss_dssp EEEECSS
T ss_pred EEEEcCC
Confidence 6777776
No 386
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.40 E-value=0.091 Score=45.71 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=42.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW 84 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ 84 (534)
..||+=+.|.++.-.+|.++|+.||-|.+-||-- | -|||.| .. .|..|++.
T Consensus 6 ~HV~~l~FP~ewKt~Di~~lFs~fggv~I~WidD---T------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 6 DHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDD---T------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEEECCTTCCHHHHHHHTTTSEEEEEEEEET---T------EEEEEEEEECHHHHHHHH
T ss_pred CeEEEEeCChhhhhHHHHHHHhccCCEEEEEEcC---C------eEEEEecCHHHHHHHHHh
Confidence 3577779999999999999999999999888853 2 599999 44 77777775
No 387
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.64 E-value=0.048 Score=58.60 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=40.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh
Q psy3698 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW 84 (534)
Q Consensus 24 SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ 84 (534)
.|.|||. .|.++++.+|.++|++||+|..+..-++.. -||.|+| .+ ++++++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g------~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG------LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS------EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC------eEEEEEeCCHHHHHHHHhc
Confidence 3689998 799999999999999999998876655432 4999999 44 78877765
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=92.37 E-value=0.32 Score=42.21 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=42.1
Q ss_pred eeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 120 TIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 120 tIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea 179 (534)
.||+=+.|..+.-.||.++| +.||.|. |.++-| -.|||.|.+++.|..|+..
T Consensus 17 HVf~l~FP~ewKt~DI~~lF-s~fggv~-I~WidD------TsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLF-SAFGNIQ-ISWIDD------TSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHH-TTTCSCC-CEEEET------TEEEEECSCHHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHh-hccCCEE-EEEEcC------CeEEEEecCHHHHHHHHHh
Confidence 34444999999999999999 9999543 444443 3799999999999999885
No 389
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=92.16 E-value=0.3 Score=43.37 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=52.0
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcC-----CCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC-ceee
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLF-----GDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF-IEVK 185 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~F-----G~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~-veIk 185 (534)
.++|=+-|||..+++..++.++ +.+ |.++.+.+..|- |-|+|.|.+...|-||.-+.. .++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lv-e~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFL-QEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHH-HHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEET
T ss_pred CcEEEEecCCCCCCHHHHHHHH-hhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeec
Confidence 4678888999999999999999 899 999999888854 559999999999998875543 4444
No 390
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=91.44 E-value=0.28 Score=42.31 Aligned_cols=80 Identities=11% Similarity=0.050 Sum_probs=52.1
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCC--CCCCc-eEEEEEeCCHHHHHHHHHhcC----ceeecccee
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDK--HKYPI-GSGRITFGSTRAYSDAIRAAF----IEVKSGRIC 190 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~Dk--TG~pK-GfGFVtF~d~EsA~kAIea~~----veIk~~k~~ 190 (534)
.-+|-|..||+.+||+++.+.+ +..=.+........+ .+.++ .-|+|.|.+.+++..-.+.-. +.-++....
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l-~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQL-RPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTT-SCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHh-CCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 3579999999999999999988 444444433322222 22111 357999999999887776633 333334444
Q ss_pred eeeeeccc
Q psy3698 191 KKLQIDPY 198 (534)
Q Consensus 191 KrVeIkPy 198 (534)
..||..||
T Consensus 88 a~VE~APy 95 (97)
T 2l08_A 88 AVVEFAPF 95 (97)
T ss_dssp EEEEECCC
T ss_pred eEEEecCC
Confidence 46777776
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=89.81 E-value=0.73 Score=39.07 Aligned_cols=60 Identities=10% Similarity=-0.053 Sum_probs=40.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeec-CCCCCCCCCCcEEEEEe-h-HHHHHHHhh
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQ-GTPESPTAPKAISLDVI-S-ELVLILGQW 84 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~-rD~~Tg~rsRGYAFVtF-s-EsAeaALq~ 84 (534)
.||-|..||+.+||+++.+.++...++....-. -+...+...-.-|||.| + |++....+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~ 64 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDR 64 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 689999999999999999999998876432222 22111212226799999 3 366555553
No 392
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=89.75 E-value=0.14 Score=54.96 Aligned_cols=59 Identities=7% Similarity=0.094 Sum_probs=44.8
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..++|||. .|..+++.+|.++| ++||.|..+....++ .-||.|+|.+.+++.+++....
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~-~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYL-SQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHH-GGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSSCC
T ss_pred hcceEEEE-cCCCCCHHHHHHHH-HhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhccC
Confidence 35889996 89999999999999 999999999887643 2699999999999998876654
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=89.64 E-value=0.33 Score=42.17 Aligned_cols=52 Identities=13% Similarity=0.258 Sum_probs=42.6
Q ss_pred eeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHh
Q psy3698 120 TIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRA 179 (534)
Q Consensus 120 tIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea 179 (534)
.||+=+.|..+.-.||.++| +.||. +.|.++-|. .|||.|.+++.|..|+..
T Consensus 7 HV~~l~FP~ewKt~Di~~lF-s~fgg-v~I~WidDT------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLF-SAFGN-IQISWIDDT------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHT-TTSEE-EEEEEEETT------EEEEEEEEECHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHH-hccCC-EEEEEEcCC------eEEEEecCHHHHHHHHHh
Confidence 35544999999999999999 99994 445555543 799999999999999886
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=89.26 E-value=0.84 Score=40.68 Aligned_cols=64 Identities=13% Similarity=-0.020 Sum_probs=48.9
Q ss_pred CCCCccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhhcCCCCc
Q psy3698 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQWATEGNL 90 (534)
Q Consensus 19 ~~p~~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ssr~i~ 90 (534)
.+....+-|-|-|.|... ...+...|++||+|+.... . ....+-.|.| +. +|++||+.++..+.
T Consensus 19 ~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~-----~~~NWihI~Y~s~~~A~rAL~kNG~ii~ 84 (119)
T 1wwh_A 19 EDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--S-----NTGNWMHIRYQSKLQARKALSKDGRIFG 84 (119)
T ss_dssp --CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--C-----SSSSEEEEEESSHHHHHHHHTTTTCEET
T ss_pred CCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--C-----CCCCeEEEEeCCHHHHHHHHHhCCeEec
Confidence 345567889999999985 6678889999999987665 1 1235999999 77 99999998665554
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=87.56 E-value=1.7 Score=38.75 Aligned_cols=73 Identities=10% Similarity=0.038 Sum_probs=54.2
Q ss_pred CCceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCceeeccceeeeeeec
Q psy3698 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEVKSGRICKKLQID 196 (534)
Q Consensus 117 ~~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veIk~~k~~KrVeIk 196 (534)
...-|-|-+.|... ...+...| ++||.|++..... ...+-.|.|.++.+|++||......+.. . -.|-++
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F-~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~kNG~ii~g-~--~mIGV~ 92 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQF-AQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALSKDGRIFGE-S--IMIGVK 92 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHH-HTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHTTTTCEETT-T--EECEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHH-HhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHHhCCeEecC-C--EEEEEE
Confidence 35678888999986 55567778 8999999887632 3578999999999999999987655532 1 235566
Q ss_pred ccc
Q psy3698 197 PYL 199 (534)
Q Consensus 197 PyL 199 (534)
|+.
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 664
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=82.31 E-value=1.6 Score=39.52 Aligned_cols=66 Identities=9% Similarity=-0.032 Sum_probs=44.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCC---------CCCC----CCcEEEEEe-hH-HHHHHHhhcCCCC
Q psy3698 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPE---------SPTA----PKAISLDVI-SE-LVLILGQWATEGN 89 (534)
Q Consensus 25 rKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~---------Tg~r----sRGYAFVtF-sE-sAeaALq~ssr~i 89 (534)
.-|.|=|-|.+. ...+.+.|++||.|.+...+.+.. ..+. ......|+| +. +|++||+.++..+
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 457888887665 456788999999998754332200 0101 246889999 77 9999999776655
Q ss_pred cc
Q psy3698 90 LC 91 (534)
Q Consensus 90 ~~ 91 (534)
.+
T Consensus 87 ~G 88 (132)
T 3p3d_A 87 NG 88 (132)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=75.66 E-value=1.6 Score=39.58 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=51.7
Q ss_pred ceeEeccccCcCCHHHHHHHhhhcCCCeEEEE-Eec----------CCCCCC----ceEEEEEeCCHHHHHHHHHhcCce
Q psy3698 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAG-IDT----------DKHKYP----IGSGRITFGSTRAYSDAIRAAFIE 183 (534)
Q Consensus 119 ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~-I~~----------DkTG~p----KGfGFVtF~d~EsA~kAIea~~ve 183 (534)
.-|.|-+.|...+.. +.+.| ++||.|++-. +.. ...++| ..+-.|+|++..+|++||+.....
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~F-s~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYF-QEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHH-GGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred eEEEEEecCHHHHHH-HHHHH-HhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 446777887776665 55678 8999987732 111 113334 467799999999999999988866
Q ss_pred eeccceeeeeeecccc
Q psy3698 184 VKSGRICKKLQIDPYL 199 (534)
Q Consensus 184 Ik~~k~~KrVeIkPyL 199 (534)
+... -|-++||-
T Consensus 86 i~G~----mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGV----LLGVIPYT 97 (132)
T ss_dssp ETTE----ECEEEECC
T ss_pred eCcE----EEEEEECC
Confidence 6532 56678883
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=75.46 E-value=4.6 Score=34.73 Aligned_cols=60 Identities=8% Similarity=-0.031 Sum_probs=37.5
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHhhccCCeeEEeecC---CCCCCCCCCcEEEEEe-hH-HHHHHHhh
Q psy3698 23 LSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQG---TPESPTAPKAISLDVI-SE-LVLILGQW 84 (534)
Q Consensus 23 ~SrKVFVGNLP~diTEeeLre~FsqFG~V~~v~~~r---D~~Tg~rsRGYAFVtF-sE-sAeaALq~ 84 (534)
.+-||-|..||+.+||+++.+.++..=++ .|.-- +...+...-.-|||.| +. ++....+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~--d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~ 72 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAH--DYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDR 72 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSE--EECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHH
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCcc--ceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 46799999999999999988777765443 33221 1111101114689999 44 66555553
No 399
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=67.37 E-value=13 Score=39.92 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=39.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-hH-HHHHHHhh
Q psy3698 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-SE-LVLILGQW 84 (534)
Q Consensus 26 KVFVGNLP~diTEeeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-sE-sAeaALq~ 84 (534)
.||+=..|..+...+|.++|+.||.|.+.|+-. -.|||.| +. .|+.+++.
T Consensus 441 ~vl~v~f~~~~~~~~i~~~fs~fg~v~V~widd---------t~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 441 HVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDD---------TSAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GEEEEECCTTCCHHHHHHHGGGGCCCEEEECSS---------SEEEEECSCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEcC---------CeEEEEECCHHHHHHHHHH
Confidence 355545999999999999999999887776633 2599999 33 77777775
No 400
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=66.76 E-value=4.5 Score=32.68 Aligned_cols=41 Identities=20% Similarity=0.493 Sum_probs=29.2
Q ss_pred ccccccCCCCccccCCCCcc-cccccccccccccCCC-CCCCCcee
Q psy3698 202 NVCSECQTHSGPYFCREGIC-YRYFCRSCWLKVHIGE-YSQHDPIV 245 (534)
Q Consensus 202 q~CdeC~~~~g~YfC~~~~C-~~YyC~sCw~~~H~~~-~~~HkPl~ 245 (534)
.-|-+|+.. +.+-| .-| -.-||..||..+|-.- +..|+...
T Consensus 9 pWC~ICneD-AtlrC--~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~ 51 (67)
T 2d8v_A 9 PWCCICNED-ATLRC--AGCDGDLYCARCFREGHDNFDLKEHQTSP 51 (67)
T ss_dssp SSCTTTCSC-CCEEE--TTTTSEEECSSHHHHHTTTSSTTTCCEEC
T ss_pred CeeEEeCCC-CeEEe--cCCCCceehHHHHHHHccchhhhccceee
Confidence 457777753 66677 345 3468999999999654 88998554
No 401
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.03 E-value=10 Score=32.93 Aligned_cols=58 Identities=9% Similarity=0.067 Sum_probs=43.3
Q ss_pred CceeEeccccCcC-CH----HHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcC
Q psy3698 118 GKTIFVGALHGRL-TA----QALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAF 181 (534)
Q Consensus 118 ~ktIFVGNLP~~~-Te----edLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~ 181 (534)
..+|+|.||+.++ +. +.++++| ..|+++....... +=.=.+|.|.+.++|.+|=...+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf-~~~~~~~tF~~lk-----SFRRirv~F~~~~~A~~AR~~Lh 67 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLF-RTYDKDTTFQYFK-----SFKRVRINFSNPLSAADARLRLH 67 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHH-HTTCSSCEEEEET-----TTTEEEEECSSTTHHHHHHHTST
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHH-HhhCcCcceeecC-----cceEEEEEeCChHHHHHHHHHhc
Confidence 3679999999877 43 4567888 8899887766554 22246899999999999976554
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=58.45 E-value=20 Score=38.47 Aligned_cols=54 Identities=15% Similarity=0.283 Sum_probs=42.5
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhc
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAA 180 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~ 180 (534)
...++|+ +|..+...+|.++| +.||.| +|.++.| -.|||.|.+.+.|..|++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~f-s~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLF-SAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHG-GGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHH-HhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHH
Confidence 3455555 99999999999999 999964 4554442 46999999999999988763
No 403
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=54.22 E-value=17 Score=31.58 Aligned_cols=67 Identities=7% Similarity=-0.160 Sum_probs=44.9
Q ss_pred ccCeEEEeCCCCCC-CH----HHHHHHhhccCCeeEEeecCCCCCCCCCCcEEEEEe-h-H-HHHHHHhhcCCCCccccc
Q psy3698 23 LSNKIFIGGVPWDT-PE----YLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVI-S-E-LVLILGQWATEGNLCGRV 94 (534)
Q Consensus 23 ~SrKVFVGNLP~di-TE----eeLre~FsqFG~V~~v~~~rD~~Tg~rsRGYAFVtF-s-E-sAeaALq~ssr~i~~k~V 94 (534)
..++|+|-||+.++ +. ++++++|.+|+++..-.+.+.-. =..|.| + | ++++-++.....+.++.+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-------RVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-------EEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-------EEEEEeCChHHHHHHHHHhccceecCcee
Confidence 35789999999877 32 56789999999998766666432 368889 3 3 555555554444555544
Q ss_pred ee
Q psy3698 95 EV 96 (534)
Q Consensus 95 QV 96 (534)
.+
T Consensus 77 r~ 78 (104)
T 1wey_A 77 KL 78 (104)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 404
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=35.71 E-value=1.3e+02 Score=22.38 Aligned_cols=60 Identities=10% Similarity=0.009 Sum_probs=47.2
Q ss_pred CceeEeccccCcCCHHHHHHHhhhcCCCeEEEEEecCCCCCCceEEEEEeCCHHHHHHHHHhcCcee
Q psy3698 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIRAAFIEV 184 (534)
Q Consensus 118 ~ktIFVGNLP~~~TeedLreiF~s~FG~Vv~V~I~~DkTG~pKGfGFVtF~d~EsA~kAIea~~veI 184 (534)
..++.|.++.-.-=...+.+.+ .. ..|..+.+.. ..+-+.|.|.+.+...+||+....++
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l-~~-~gv~~~~v~~-----~~~~~~v~~~~~~~i~~~i~~~Gy~~ 65 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKAL-EE-AGAKVEKVDL-----NEAVVAGNKEDVDKYIKAVEAAGYQA 65 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHH-HH-TTCEEEEECS-----SEEEEEEEGGGHHHHHHHHHHTTCEE
T ss_pred EEEEEECCCCCHHHHHHHHHHh-cc-CCcEEEEEEc-----cCCEEEEEECCHHHHHHHHHHcCCce
Confidence 3567888888777788899999 66 8888888876 56778899987778888888766443
No 405
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=31.76 E-value=24 Score=29.04 Aligned_cols=34 Identities=26% Similarity=0.576 Sum_probs=25.6
Q ss_pred cccccccCCC---CccccCCCCcccc---c-ccccccccccCC
Q psy3698 201 DNVCSECQTH---SGPYFCREGICYR---Y-FCRSCWLKVHIG 236 (534)
Q Consensus 201 Dq~CdeC~~~---~g~YfC~~~~C~~---Y-yC~sCw~~~H~~ 236 (534)
...|+.|... -..|.| +.|.. | +|..|+...+..
T Consensus 21 ~~~Cd~C~~~pI~G~RykC--~~C~d~~~yDLC~~C~~~g~~~ 61 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHC--QDCPPEMSLDFCDSCSDCLHET 61 (82)
T ss_dssp SCCCSSSCCSSEESCEEEE--SSSCSSSCCEEEGGGTTCCCCC
T ss_pred cCCCCCCCCCcceeceEEC--CcCCCCcceecHHHHHhCcccc
Confidence 3579999854 256888 57888 7 899999987643
No 406
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=29.78 E-value=14 Score=33.37 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=20.9
Q ss_pred EcCCCCCCchHHHHHhhccccceEE
Q psy3698 496 IGGVPWDTPEYLLLTVFSQFGPVKA 520 (534)
Q Consensus 496 ~gg~p~d~~e~~l~~~f~~~g~~~~ 520 (534)
++|+|||..+..|.++|..++=..+
T Consensus 130 ~~G~~w~~v~~ii~~~l~~~~i~v~ 154 (158)
T 2fg1_A 130 LAGGKWELMEQIIKEELITKEIAVT 154 (158)
T ss_dssp TTCCCHHHHHHHHHHHTGGGTCCEE
T ss_pred CCCCCHHHHHHHHHHHhccCCcEEE
Confidence 5899999999999999999853333
No 407
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=25.60 E-value=23 Score=28.55 Aligned_cols=40 Identities=20% Similarity=0.584 Sum_probs=29.8
Q ss_pred cccccccCC---CCccccCCCCcccccccccccccccCCC--CCCCC
Q psy3698 201 DNVCSECQT---HSGPYFCREGICYRYFCRSCWLKVHIGE--YSQHD 242 (534)
Q Consensus 201 Dq~CdeC~~---~~g~YfC~~~~C~~YyC~sCw~~~H~~~--~~~Hk 242 (534)
+-.|+.|.+ ..+.=.| +.|...||+.|-...|... +..|+
T Consensus 30 ~v~C~~C~~~~~~~A~ksC--l~C~~s~C~~hl~~~H~~~~~~~~H~ 74 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTC--VTCEVSYCDECLKATHPNKKPFTGHR 74 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEE--TTTTEEECHHHHHHHSCCCSSSCSCC
T ss_pred CccCCcCCCCCCCCCeeEc--cCccchhhhhhhHhhcCCCCCCCCCc
Confidence 568999975 3455567 7799999999999878764 55664
No 408
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=22.77 E-value=36 Score=28.99 Aligned_cols=29 Identities=28% Similarity=0.866 Sum_probs=21.9
Q ss_pred ccccccCCC---CccccCCCCccccc-cccccccc
Q psy3698 202 NVCSECQTH---SGPYFCREGICYRY-FCRSCWLK 232 (534)
Q Consensus 202 q~CdeC~~~---~g~YfC~~~~C~~Y-yC~sCw~~ 232 (534)
..|+.|... -..|.| +.|..| +|..|-..
T Consensus 32 v~Cd~C~~~pI~G~RykC--~~C~d~DLC~~C~~~ 64 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKC--TECIEYHLCQECFDS 64 (98)
T ss_dssp CCCSSSCCSSCCSCEEEE--SSSSSCEEEHHHHHT
T ss_pred CCCcCCCCCCcccCeEEC--CCCCCccHHHHHHcc
Confidence 689999863 255888 578888 89999544
No 409
>3p0s_A Capsid protein VP; icosahedral virus capsid, virus-like particle, capsid protei barrel; 3.10A {Bombyx mori densovirus 1}
Probab=21.97 E-value=43 Score=34.69 Aligned_cols=49 Identities=24% Similarity=0.336 Sum_probs=36.0
Q ss_pred ceecccCCCCCc--CCCcccee---eeEEcCCCCC-----CchHHHHHhhccccceEEE
Q psy3698 473 KTWEGVLPLRTQ--FSDEILSN---KIFIGGVPWD-----TPEYLLLTVFSQFGPVKAV 521 (534)
Q Consensus 473 ~~w~g~lp~~~~--~~~~~~s~---kvf~gg~p~d-----~~e~~l~~~f~~~g~~~~~ 521 (534)
+|-+--||.--| -++..|+. ---|-|+||+ ++|.+|...|+-|-.||||
T Consensus 71 FTitNgLPefrh~i~t~~~y~aq~RfkhIHGIPWErllMY~SEGE~lrl~rdYt~~kVE 129 (494)
T 3p0s_A 71 FTITNGLPEFRHLATTNSGYYAQQRFKHIHGIPWERLLMYVSEGELLRMFRDYTSLKVE 129 (494)
T ss_dssp EEEECCCEEEEEEEETTTEEEEEEEEEEEEEECTTBGGGTSCHHHHHHHTTSCSEEEEE
T ss_pred EEecCCCHHHHHhhhcccchhhHhhhhhccCCcHHHHhhhhcchHHHHHHhhhhheeee
Confidence 455566775321 12556763 3458899998 6999999999999999997
No 410
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=21.32 E-value=26 Score=31.99 Aligned_cols=30 Identities=13% Similarity=0.346 Sum_probs=23.1
Q ss_pred ccceeeeEEcCCCCCCchHHHHHhhccccceEE
Q psy3698 488 EILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKA 520 (534)
Q Consensus 488 ~~~s~kvf~gg~p~d~~e~~l~~~f~~~g~~~~ 520 (534)
|..+|= ++|+|||..+..+.++|..++ |.|
T Consensus 126 P~IgtG--i~G~p~~~v~~ii~~~~~~~~-i~v 155 (160)
T 2jyc_A 126 PRIGCG--LDRLQWENVSAMIEEVFEATD-IKI 155 (160)
T ss_dssp ESCCSS--CSSSCHHHHHHHHHHHHTTSC-CEE
T ss_pred CCCCCC--CCCCCHHHHHHHHHHHHhhCC-CeE
Confidence 444554 479999999999999999875 443
Done!