RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3698
(534 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 51.5 bits (122), Expect = 3e-08
Identities = 29/167 (17%), Positives = 52/167 (31%), Gaps = 6/167 (3%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISELVLILGQWA 85
K+FIGG+ ++T + L + F Q+G + P + + + + A
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE---VDAA 64
Query: 86 TEGNLCGRVEVVPWAISDSNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGD 145
V + K IFVG + L + +G
Sbjct: 65 MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ-YGK 123
Query: 146 VVYAGIDTDK-HKYPIGSGRITFGSTRAYSDAIRAAFIEVKSGRICK 191
+ I TD+ G +TF + + + V G C+
Sbjct: 124 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN-GHNCE 169
Score = 41.1 bits (95), Expect = 1e-04
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMS 529
K+FIGG+ ++T + L + F Q+G + V+ R +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNT 44
Score = 30.4 bits (67), Expect = 0.37
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%)
Query: 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYA-GIDTDKHKYPIGSGRITFGSTRAYS 174
E + +F+G L T ++L + +G + + K G G +T+ +
Sbjct: 4 EQLRKLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 175 DAIRAAFIEVKSGRICKKLQIDPYLEDNVCSECQTH 210
A+ A +V + K + +
Sbjct: 63 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 98
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 39.9 bits (93), Expect = 4e-05
Identities = 6/43 (13%), Positives = 18/43 (41%)
Query: 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPES 62
+ I +++ +P + L T+F ++G + + +
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT 44
Score = 38.4 bits (89), Expect = 1e-04
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 487 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVK 519
+ I +++ +P + L T+F ++G +
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIV 34
Score = 28.8 bits (64), Expect = 0.44
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 110 GHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVV-YAGIDTDKHKYPIGSGRITFG 168
G S K ++V L +T L + +G +V + P G + +
Sbjct: 1 GESIK---DTNLYVTNLPRTITDDQLDTIFGK-YGSIVQKNILRDKLTGRPRGVAFVRYN 56
Query: 169 STRAYSDAIRA 179
+AI A
Sbjct: 57 KREEAQEAISA 67
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 39.6 bits (92), Expect = 5e-05
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESP 63
KIF+GG+ DTPE + F FG V+ ++
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN 38
Score = 38.4 bits (89), Expect = 1e-04
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMS 529
KIF+GG+ DTPE + F FG V+++ + +
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT 37
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 39.9 bits (93), Expect = 6e-05
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNR 525
++KI + +P+ + + +FS FG +K V + +
Sbjct: 8 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPK 42
Score = 38.0 bits (88), Expect = 3e-04
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEW 55
++KI + +P+ + + +FS FG +K
Sbjct: 8 TSKILVRNIPFQANQREIRELFSTFGELKTVR 39
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 39.2 bits (91), Expect = 7e-05
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPES 62
K+FIGG+ W T + L F QFG VK P +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT 38
Score = 38.0 bits (88), Expect = 2e-04
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMS 529
K+FIGG+ W T + L F QFG VK ++ R ++
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT 38
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 39.7 bits (92), Expect = 9e-05
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 5 QKTWEGVLPLRTQFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESP 63
+KT E V PL + ++ K+FIGG+ ++T E L + Q+G + P S
Sbjct: 2 EKTLETV-PLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASK 59
Score = 38.9 bits (90), Expect = 2e-04
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 472 QKTWEGVLPLRTQFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMS 529
+KT E V PL + ++ K+FIGG+ ++T E L + Q+G + V+ R S
Sbjct: 2 EKTLETV-PLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPAS 58
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 37.6 bits (87), Expect = 2e-04
Identities = 5/33 (15%), Positives = 17/33 (51%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNR 525
K+ + + + + + +F++FG +K ++
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY 34
Score = 35.7 bits (82), Expect = 0.001
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVK 52
K+ + + + + + +F++FG +K
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLK 28
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 38.0 bits (88), Expect = 2e-04
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQ 57
S +++G + + T E + +FS+ G +K
Sbjct: 7 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMG 40
Score = 36.9 bits (85), Expect = 6e-04
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVK 519
S +++G + + T E + +FS+ G +K
Sbjct: 7 SCTLYVGNLSFYTTEEQIYELFSKSGDIK 35
Score = 31.1 bits (70), Expect = 0.061
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 115 LEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGS-GRITFGSTRAY 173
L+ T++VG L T + +Y + + GD+ + DK K + + S
Sbjct: 4 LKKSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGLDKMKKTACGFCFVEYYSRADA 62
Query: 174 SDAIRA 179
+A+R
Sbjct: 63 ENAMRY 68
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 36.8 bits (85), Expect = 4e-04
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNR 525
+++G + D E +L FS GP+ ++ + R
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCR 34
Score = 35.3 bits (81), Expect = 0.002
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPV 51
+++G + D E +L FS GP+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPI 27
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 36.6 bits (84), Expect = 7e-04
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPE 61
S I +++ G+P + L +FSQ+G +
Sbjct: 1 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 43
Score = 35.4 bits (81), Expect = 0.002
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 486 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVK 519
S I +++ G+P + L +FSQ+G +
Sbjct: 1 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 34
Score = 30.0 bits (67), Expect = 0.16
Identities = 10/62 (16%), Positives = 20/62 (32%)
Query: 118 GKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAI 177
++V L +T + L + + + + G G I F +AI
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 65
Query: 178 RA 179
+
Sbjct: 66 KG 67
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 36.9 bits (85), Expect = 7e-04
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEM 528
+ ++ GG+ + L+ FS FG + + + +
Sbjct: 18 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG 55
Score = 34.6 bits (79), Expect = 0.004
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVK 52
+ ++ GG+ + L+ FS FG +
Sbjct: 18 NCTVYCGGIASGLTDQLMRQTFSPFGQIM 46
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 35.7 bits (82), Expect = 0.001
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESP 63
K+FIGG+ WDT + L FS+FG V + P +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITG 38
Score = 33.8 bits (77), Expect = 0.006
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGP 517
K+FIGG+ WDT + L FS+FG
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGE 25
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 35.8 bits (82), Expect = 0.001
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEW 55
NK++IG + L +F
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQ 32
Score = 35.0 bits (80), Expect = 0.002
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 492 NKIFIGGVPWDTPEYLLLTVFSQFGPVK 519
NK++IG + L +F
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKLPL 29
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 36.3 bits (83), Expect = 0.001
Identities = 4/39 (10%), Positives = 15/39 (38%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMSSD 531
++++G +P+ E ++ F+ + +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA 41
Score = 33.6 bits (76), Expect = 0.009
Identities = 4/27 (14%), Positives = 14/27 (51%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVK 52
++++G +P+ E ++ F+ +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLG 29
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 36.2 bits (83), Expect = 0.001
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 487 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNR 525
+E + +F + L FS G V+ V +
Sbjct: 14 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIIS 52
Score = 33.8 bits (77), Expect = 0.009
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVK 52
+E + +F + L FS G V+
Sbjct: 14 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVR 46
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 35.4 bits (81), Expect = 0.002
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVM 523
+ + + +P D + L +F GP+ +
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRI 34
Score = 34.6 bits (79), Expect = 0.003
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPV 51
+ + + +P D + L +F GP+
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPI 29
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 35.4 bits (81), Expect = 0.002
Identities = 17/77 (22%), Positives = 32/77 (41%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISELVLILGQWA 85
K+FIGG+ ++T + L + F Q+G + P + + + + + A
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 86 TEGNLCGRVEVVPWAIS 102
+ GRV A+S
Sbjct: 68 RPHKVDGRVVEPKRAVS 84
Score = 33.1 bits (75), Expect = 0.011
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMS 529
K+FIGG+ ++T + L + F Q+G + V+ R +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNT 44
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 35.4 bits (81), Expect = 0.002
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 27 IFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPE 61
+FI + + T E L VFS+ G +K
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKN 35
Score = 34.6 bits (79), Expect = 0.003
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 494 IFIGGVPWDTPEYLLLTVFSQFGPV 518
+FI + + T E L VFS+ G +
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAI 25
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 35.8 bits (82), Expect = 0.002
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTP 60
+ ++I +P+ + +F ++GP++ TP
Sbjct: 7 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP 43
Score = 35.0 bits (80), Expect = 0.004
Identities = 5/29 (17%), Positives = 16/29 (55%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVK 519
+ ++I +P+ + +F ++GP++
Sbjct: 7 NRILYIRNLPYKITAEEMYDIFGKYGPIR 35
Score = 35.0 bits (80), Expect = 0.004
Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSD 175
E + +++ L ++TA+ +Y++ +G + I G+ + + +
Sbjct: 5 EVNRILYIRNLPYKITAEEMYDIFGK-YGPIRQ--IRVGNTPETRGTAYVVYEDIFDAKN 61
Query: 176 AIRA 179
A
Sbjct: 62 ACDH 65
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 35.5 bits (81), Expect = 0.002
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEM 528
++ I++ G+ L F Q G VK M
Sbjct: 8 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPM 45
Score = 34.4 bits (78), Expect = 0.006
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVK 52
++ I++ G+ L F Q G VK
Sbjct: 8 NSAIYVQGLNDSVTLDDLADFFKQCGVVK 36
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 34.9 bits (80), Expect = 0.002
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEM 528
+++F+G +P D E + +F ++G V +++ +
Sbjct: 8 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG 45
Score = 34.2 bits (78), Expect = 0.005
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQ 57
+++F+G +P D E + +F ++G +
Sbjct: 8 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH 41
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 34.3 bits (78), Expect = 0.003
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNR 525
KIF+GG+ +T + F QFG V ++
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMF 33
Score = 33.9 bits (77), Expect = 0.004
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQ 57
KIF+GG+ +T + F QFG V
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLM 32
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 34.4 bits (78), Expect = 0.003
Identities = 2/32 (6%), Positives = 9/32 (28%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQ 57
+++ P + + + V +
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRL 34
Score = 33.6 bits (76), Expect = 0.008
Identities = 2/36 (5%), Positives = 10/36 (27%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEM 528
+++ P + + + V + +
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR 38
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 34.6 bits (79), Expect = 0.003
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMS 529
++K+FIGG+P + + + + FGP+KA + + +
Sbjct: 1 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT 39
Score = 33.8 bits (77), Expect = 0.007
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGP---VKVEWPQGTPES 62
++K+FIGG+P + + + + FGP + T S
Sbjct: 1 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 42
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 34.6 bits (79), Expect = 0.004
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 486 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMN 524
D+ +++G + D E L+L +FSQ GP K+ M
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI 41
Score = 33.5 bits (76), Expect = 0.009
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPE 61
D+ +++G + D E L+L +FSQ GP K
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT 45
Score = 29.2 bits (65), Expect = 0.33
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSD 175
+T++VG L +T + + + G + T+ + F R +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQ-IGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAA 63
Query: 176 AIRA 179
A+ A
Sbjct: 64 ALAA 67
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 34.3 bits (78), Expect = 0.004
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPES 62
+ + + G+ T E L VFS++GP+ +S
Sbjct: 9 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS 47
Score = 33.5 bits (76), Expect = 0.008
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVK 519
+ + + G+ T E L VFS++GP+
Sbjct: 9 NCCLGVFGLSLYTTERDLREVFSKYGPIA 37
Score = 32.7 bits (74), Expect = 0.015
Identities = 10/70 (14%), Positives = 22/70 (31%)
Query: 110 GHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGS 169
G+ +P + V L T + L V + + + + + G + F +
Sbjct: 1 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 60
Query: 170 TRAYSDAIRA 179
+A
Sbjct: 61 VDDAKEAKER 70
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 34.3 bits (78), Expect = 0.004
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 27 IFIGGVPWDTPEYLLLTVFSQFGPVKVEW 55
IFIG + + E LL FS FG +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTP 29
Score = 33.2 bits (75), Expect = 0.009
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 494 IFIGGVPWDTPEYLLLTVFSQFGPV 518
IFIG + + E LL FS FG +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVI 25
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 34.2 bits (78), Expect = 0.005
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQ 57
+++GG+ + + +L F FG +
Sbjct: 5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIP 38
Score = 33.5 bits (76), Expect = 0.010
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVK 519
+++GG+ + + +L F FG +
Sbjct: 5 KRVLYVGGLAEEVDDKVLHAAFIPFGDIT 33
Score = 30.8 bits (69), Expect = 0.071
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHK-YPIGSGRITFGSTRAYSD 175
+ ++VG L + + L+ FGD+ I D G + F +
Sbjct: 4 TKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 62
Query: 176 AIRA 179
AI
Sbjct: 63 AIDN 66
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 34.0 bits (77), Expect = 0.005
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 489 ILSNKIFIGGVPWDTPEYLLLTVF---SQFGPVKAVVMNR 525
+ N +F+ G+ + +L +FG + VV+N
Sbjct: 6 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINN 45
Score = 30.9 bits (69), Expect = 0.076
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 22 ILSNKIFIGGVPWDTPEYLLLTVF---SQFGPVK 52
+ N +F+ G+ + +L +FG +
Sbjct: 6 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH 39
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 34.1 bits (78), Expect = 0.006
Identities = 6/36 (16%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 491 SNKIFIGGV-PWDTPEYLLLTVFSQFGPVKAVVMNR 525
++++FIG + + + +FS++G + +++
Sbjct: 15 NSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK 50
Score = 32.9 bits (75), Expect = 0.018
Identities = 6/30 (20%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 24 SNKIFIGGV-PWDTPEYLLLTVFSQFGPVK 52
++++FIG + + + +FS++G +
Sbjct: 15 NSRVFIGNLNTLVVKKSDVEAIFSKYGKIV 44
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 33.9 bits (77), Expect = 0.007
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMSSDDV 533
S+ +F+G D E L FSQ+G V V + + + V
Sbjct: 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFV 47
Score = 31.5 bits (71), Expect = 0.048
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVK 52
S+ +F+G D E L FSQ+G V
Sbjct: 5 SSGVFVGRCTGDMTEDELREFFSQYGDVM 33
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 33.5 bits (76), Expect = 0.009
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMSS 530
IFI + L FS FG + + + E S
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS 47
Score = 31.5 bits (71), Expect = 0.050
Identities = 10/40 (25%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGP---VKVEWPQGTP 60
IFI + L FS FG KV +
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS 47
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 33.4 bits (76), Expect = 0.009
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESP 63
++ + + G+PW T E L FS FG V + + ++
Sbjct: 8 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTG 47
Score = 33.4 bits (76), Expect = 0.009
Identities = 9/64 (14%), Positives = 18/64 (28%)
Query: 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSD 175
+ + V L + T Q L + ++ K + G G + F
Sbjct: 6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 65
Query: 176 AIRA 179
+
Sbjct: 66 VMSQ 69
Score = 32.3 bits (73), Expect = 0.027
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVK 519
++ + + G+PW T E L FS FG V
Sbjct: 8 TSDLIVLGLPWKTTEQDLKEYFSTFGEVL 36
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 33.5 bits (76), Expect = 0.010
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGP 50
S+ +++GG+ E LL +F Q GP
Sbjct: 4 SERNQDATVYVGGLDEKVSEPLLWELFLQAGP 35
Score = 33.5 bits (76), Expect = 0.010
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 486 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGP 517
S+ +++GG+ E LL +F Q GP
Sbjct: 4 SERNQDATVYVGGLDEKVSEPLLWELFLQAGP 35
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 33.1 bits (75), Expect = 0.012
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 117 PGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDA 176
P TI++ L+ ++ L ++ +F + I + F + S A
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSR--FGQILDILVSRSLKMRGQAFVIFKEVSSA 59
Query: 177 IRAAFIEVKSGRIC--KKLQID 196
A + G K ++I
Sbjct: 60 TNA--LRSMQGFPFYDKPMRIQ 79
Score = 28.1 bits (62), Expect = 0.78
Identities = 8/43 (18%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 491 SNKIFIGGVPWDTPEYLL----LTVFSQFGPVKAVVMNRAEMS 529
++ I+I + + L +FS+FG + ++++R+
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKM 45
Score = 26.9 bits (59), Expect = 2.1
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 24 SNKIFIGGVPWDTPEYLL----LTVFSQF 48
++ I+I + + L +FS+F
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRF 31
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 33.1 bits (75), Expect = 0.013
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMN 524
++FIGG+P +L ++ V+
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIV 34
Score = 32.4 bits (73), Expect = 0.029
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPV 51
++FIGG+P +L ++
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEG 28
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 33.2 bits (75), Expect = 0.015
Identities = 12/67 (17%), Positives = 23/67 (34%)
Query: 113 TKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRA 172
+ + GKT+F+ L +AL V+ + ++ G F + A
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEA 62
Query: 173 YSDAIRA 179
+ A
Sbjct: 63 AQKCLAA 69
Score = 26.3 bits (57), Expect = 3.6
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQF 48
SD +FI + +D+ E L V QF
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQF 32
Score = 26.3 bits (57), Expect = 3.6
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 486 SDEILSNKIFIGGVPWDTPEYLLLTVFSQF 515
SD +FI + +D+ E L V QF
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQF 32
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 32.7 bits (74), Expect = 0.017
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMSS 530
++ + +P+ + L +F QFG + V + E S
Sbjct: 11 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS 50
Score = 32.7 bits (74), Expect = 0.018
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESP 63
++ + +P+ + L +F QFG +
Sbjct: 11 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS 50
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 32.7 bits (74), Expect = 0.022
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNR 525
+I++G +P D + VF ++G ++ + +
Sbjct: 14 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN 48
Score = 31.2 bits (70), Expect = 0.071
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWP 56
+I++G +P D + VF ++G ++
Sbjct: 14 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL 46
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 32.3 bits (73), Expect = 0.027
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMS 529
+ I + + DT E L +F FG + + + + + +
Sbjct: 8 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTT 46
Score = 31.6 bits (71), Expect = 0.044
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQ 57
+ I + + DT E L +F FG + +
Sbjct: 8 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLA 41
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 32.3 bits (73), Expect = 0.027
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 112 STKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTR 171
S K+ +T+ L +T L ++F D + + + G I F S
Sbjct: 10 SKKVRAARTLLAKNLSFNITEDELK----EVFEDALEIRLVSQ-DGKSKGIAYIEFKSEA 64
Query: 172 AYSDAIRA 179
+
Sbjct: 65 DAEKNLEE 72
Score = 30.8 bits (69), Expect = 0.10
Identities = 5/38 (13%), Positives = 13/38 (34%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEM 528
+ + + ++ E L VF ++ V +
Sbjct: 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSK 53
Score = 30.0 bits (67), Expect = 0.20
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQG 58
+ + + ++ E L VF +++ G
Sbjct: 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDG 50
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 31.2 bits (70), Expect = 0.043
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQ 57
KIF+GG+ DT E+ L F Q+G ++V
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 35
Score = 30.8 bits (69), Expect = 0.062
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQF 515
KIF+GG+ DT E+ L F Q+
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQY 26
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 31.5 bits (70), Expect = 0.052
Identities = 6/39 (15%), Positives = 11/39 (28%)
Query: 19 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQ 57
S+ +FIG + + L S+
Sbjct: 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV 46
Score = 30.3 bits (67), Expect = 0.14
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 486 SDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVK 519
S+ +FIG + + L S+
Sbjct: 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKN 41
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 31.2 bits (70), Expect = 0.064
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMN 524
S ++F+ + + + E L +FS +GP+ +
Sbjct: 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYP 41
Score = 30.8 bits (69), Expect = 0.11
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPE 61
S ++F+ + + + E L +FS +GP+
Sbjct: 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL 45
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 31.7 bits (71), Expect = 0.069
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 27 IFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPESPTAPKAISLDVISELVLILGQWAT 86
F G + T L +FS G +K + I ++ L + A
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKE----GIILFKEKAKEALGKAKDAN 69
Query: 87 EGNLCGRVEVVPWAISDSNYSPQ 109
GNL R + V W + + +
Sbjct: 70 NGNLQLRNKEVTWEVLEGEVEKE 92
Score = 30.9 bits (69), Expect = 0.10
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 494 IFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMSS 530
F G + T L +FS G +K + R
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEG 50
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 31.3 bits (70), Expect = 0.073
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 104 SNYSPQGHSTKLEPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSG 163
S+Y+P EP K +++ L R+T + L ++ G
Sbjct: 10 SSYNPG------EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQA 63
Query: 164 RITFGSTRAYSDAIRA 179
ITF + A+
Sbjct: 64 FITFPNKEIAWQALHL 79
Score = 29.4 bits (65), Expect = 0.36
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVM 523
+ +++ + E L+++F++F K +
Sbjct: 18 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPI 50
Score = 28.2 bits (62), Expect = 0.76
Identities = 4/28 (14%), Positives = 14/28 (50%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPV 51
+ +++ + E L+++F++F
Sbjct: 18 NKVLYLKNLSPRVTERDLVSLFARFQEK 45
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 30.4 bits (68), Expect = 0.085
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 197 PYLEDNVCSECQTH----SGPYFCREGICYRYFCRSC 229
+ + VC C+ + + CR C + FC C
Sbjct: 9 NWADGRVCHRCRVEFTFTNRKHHCR--NCGQVFCGQC 43
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 30.9 bits (69), Expect = 0.085
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQ 57
S+ I + +P D+ + + + +
Sbjct: 5 SSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDR 38
Score = 28.9 bits (64), Expect = 0.38
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPV 518
S+ I + +P D+ + + +
Sbjct: 5 SSGILVKNLPQDSNCQEVHDLLKDYDLK 32
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 30.8 bits (69), Expect = 0.090
Identities = 5/41 (12%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 487 DEILS--NKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNR 525
++ +S +++ + T E ++ F+ P + +
Sbjct: 2 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK 42
Score = 30.4 bits (68), Expect = 0.092
Identities = 5/35 (14%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 20 DEILS--NKIFIGGVPWDTPEYLLLTVFSQFGPVK 52
++ +S +++ + T E ++ F+ P
Sbjct: 2 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGA 36
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 30.5 bits (68), Expect = 0.094
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 487 DEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEM 528
+++ + ++I G P D + G V + M R
Sbjct: 2 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH 43
Score = 30.5 bits (68), Expect = 0.11
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 20 DEILSNKIFIGGVPWDTPEYLLLTVFSQF 48
+++ + ++I G P D +
Sbjct: 2 NDVKNRSVYIKGFPTDATLDDIKEWLEDK 30
Score = 30.1 bits (67), Expect = 0.12
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIR 178
+++++ T + + D G V+ + HK GS + F S + +
Sbjct: 7 RSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 65
Query: 179 AAFIEVKSGRICKKLQIDPY 198
+ K + + D +
Sbjct: 66 TPGQKYKETDLLILFKDDYF 85
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 30.8 bits (69), Expect = 0.10
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 469 QIPQKTWEGVLPLRTQFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNR 525
+ PQ + + LR+ SD + + E + + ++G V+ + +
Sbjct: 11 RNPQNSSQSADGLRSAVSDV------EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCD 61
Score = 28.8 bits (64), Expect = 0.59
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 2 QIPQKTWEGVLPLRTQFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVK 52
+ PQ + + LR+ SD + + E + + ++G V+
Sbjct: 11 RNPQNSSQSADGLRSAVSDV------EMQEHYDEFFEEVFTEMEEKYGEVE 55
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 30.2 bits (67), Expect = 0.11
Identities = 5/36 (13%), Positives = 13/36 (36%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEM 528
+ + +P + + F GP+ V + +
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK 37
Score = 27.5 bits (60), Expect = 0.94
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVK 52
+ + +P + + F GP+
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPII 28
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 30.1 bits (67), Expect = 0.11
Identities = 3/37 (8%), Positives = 13/37 (35%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPES 62
+ + +P + + ++F G ++ +
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKIT 40
Score = 29.3 bits (65), Expect = 0.27
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGP 517
+ + +P + + ++F G
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGE 28
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 28.4 bits (64), Expect = 0.15
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 213 PYFCREGICYRYFCRSCWLKVH 234
PY C C R F RS L H
Sbjct: 2 PYACPVESCDRRFSRSADLTRH 23
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 28.5 bits (64), Expect = 0.16
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 213 PYFCREGICYRYFCRSCWLKVH 234
P+ C C + + R LK H
Sbjct: 2 PHKCTFEGCRKSYSRLENLKTH 23
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 29.7 bits (66), Expect = 0.22
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 116 EPGKTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSD 175
+ GK +FVG L Q+L V + + + + G G +TF + D
Sbjct: 4 DEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 176 AIRA 179
A+ A
Sbjct: 63 AMMA 66
Score = 27.0 bits (59), Expect = 1.7
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 19 SDEILSNKIFIGGVPWDTPEYLL 41
SDE K+F+GG+ +DT E L
Sbjct: 3 SDE---GKLFVGGLSFDTNEQSL 22
Score = 27.0 bits (59), Expect = 1.7
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 486 SDEILSNKIFIGGVPWDTPEYLL 508
SDE K+F+GG+ +DT E L
Sbjct: 3 SDE---GKLFVGGLSFDTNEQSL 22
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 67
Score = 28.8 bits (64), Expect = 0.24
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 199 LEDNVCSECQT----HSGPYFCREGICYRYFCRSC 229
++ + C C + + CR C FC+
Sbjct: 3 IDSDACMICSKKFSLLNRKHHCR--SCGGVFCQEH 35
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 29.3 bits (65), Expect = 0.24
Identities = 5/37 (13%), Positives = 12/37 (32%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTP 60
+F+ + + E + F +G +K
Sbjct: 7 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR 43
Score = 28.5 bits (63), Expect = 0.58
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGP 517
+F+ + + E + F +G
Sbjct: 7 GWILFVTSIHEEAQEDEIQEKFCDYGE 33
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 29.7 bits (66), Expect = 0.27
Identities = 11/61 (18%), Positives = 26/61 (42%)
Query: 119 KTIFVGALHGRLTAQALYNVMNDLFGDVVYAGIDTDKHKYPIGSGRITFGSTRAYSDAIR 178
+++FVG + T + L ++ +++ V + + + P G G + A+R
Sbjct: 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 68
Query: 179 A 179
Sbjct: 69 N 69
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 27.7 bits (62), Expect = 0.29
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 213 PYFCREGICYRYFCRSCWLKVH 234
PY C C + F R+ L H
Sbjct: 3 PYSCDHPGCDKAFVRNHDLIRH 24
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 29.3 bits (65), Expect = 0.30
Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 1/40 (2%)
Query: 491 SNKIFIGGVP-WDTPEYLLLTVFSQFGPVKAVVMNRAEMS 529
+ I Y LL + FG + ++
Sbjct: 8 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINE 47
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 28.9 bits (64), Expect = 0.32
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 24 SNKIFIGGVPWD-TPEYLLLTVFSQFGPVKVEWPQGTPESPTAPK 67
+I I + + E LL F FG ++ + +
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNN 48
Score = 27.4 bits (60), Expect = 1.2
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 491 SNKIFIGGVPWD-TPEYLLLTVFSQF 515
+I I + + E LL F F
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGF 29
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 29.9 bits (66), Expect = 0.42
Identities = 8/65 (12%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 453 STLDIAARHHRSSANSQIPQKTWE--GVLPLRTQFSDEILSNKIFIGGVPWDTPEYLLLT 510
S + + +++ +Q+ Q + +P + + + + +P E L
Sbjct: 2 SQIPLVSQYDPYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQ 61
Query: 511 VFSQF 515
+F ++
Sbjct: 62 LFERY 66
Score = 27.6 bits (60), Expect = 1.9
Identities = 9/57 (15%), Positives = 22/57 (38%)
Query: 1 SQIPQKTWEGVLPLRTQFSDEILSNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQ 57
Q Q+ + +P + + + + +P E L +F ++GP++
Sbjct: 19 LQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIV 75
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 27.9 bits (61), Expect = 0.54
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 6/41 (14%)
Query: 200 EDNVCSECQTHSGPYFCREGI---CYRYFCRSC---WLKVH 234
+ VC C G R RSC WL +
Sbjct: 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTIS 45
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 27.0 bits (60), Expect = 0.56
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 213 PYFCREGICYRYFCRSCWLKV----HIGE 237
P+ C C + F L+ H G+
Sbjct: 2 PFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.5 bits (59), Expect = 0.61
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 213 PYFCREGICYRYFCRSCWLKVHI 235
PY C C + F +S LK HI
Sbjct: 2 PYVCPFDGCNKKFAQSTNLKSHI 24
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 26.5 bits (59), Expect = 0.70
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 213 PYFCREGICYRYFCRSCWLKVH 234
P+ C C + F RS L+ H
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRH 23
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 26.6 bits (59), Expect = 0.74
Identities = 8/27 (29%), Positives = 9/27 (33%), Gaps = 4/27 (14%)
Query: 210 HSG--PYFCREGICYRYFCRSCWLKVH 234
SG P+ CR C F H
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARH 26
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 28.1 bits (62), Expect = 0.80
Identities = 7/38 (18%), Positives = 20/38 (52%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEM 528
+ ++++GG+ +T L F +FG ++ + + +
Sbjct: 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS 54
Score = 27.3 bits (60), Expect = 1.6
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQF 48
+ ++++GG+ +T L F +F
Sbjct: 17 TTRLWVGGLGPNTSLAALAREFDRF 41
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 27.4 bits (60), Expect = 0.87
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 199 LEDNVCSECQ---THSGPYFCREGICYRYFCRSCW 230
++D C C+ + +C C SC
Sbjct: 1 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCV 35
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 28.1 bits (62), Expect = 0.95
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQ 57
+FI +P + + LL +F FG V
Sbjct: 18 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 51
Score = 27.4 bits (60), Expect = 1.6
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGP 517
+FI +P + + LL +F FG
Sbjct: 18 GANLFIYHLPQEFGDQDLLQMFMPFGN 44
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 27.8 bits (61), Expect = 1.0
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEM 528
S + + +P E L +FS G V +
Sbjct: 10 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 47
Score = 27.0 bits (59), Expect = 1.6
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQ 57
S + + +P E L +FS G V +
Sbjct: 10 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 43
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 27.8 bits (61), Expect = 1.1
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQGTPE 61
KIF+GG+P+ T + L F FG ++ +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ 47
Score = 26.2 bits (57), Expect = 3.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQF 515
KIF+GG+P+ T + L F F
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGF 34
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.8 bits (61), Expect = 1.2
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQ 57
F+G +P+D E + F V P+
Sbjct: 15 PYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPR 48
Score = 27.0 bits (59), Expect = 2.2
Identities = 6/39 (15%), Positives = 11/39 (28%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEMS 529
F+G +P+D E + F +
Sbjct: 15 PYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNP 53
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 27.2 bits (60), Expect = 1.3
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNR 525
+ + G P + Y +L F+Q+G + VM+
Sbjct: 4 DTWVTVFGFPQASASY-ILLQFAQYGNILKHVMSN 37
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.4 bits (56), Expect = 1.5
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 213 PYFCREGICYRYFCRSCWLKVH 234
+ C E C + F RS L H
Sbjct: 2 KFACPE--CPKRFMRSDHLSKH 21
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.8 bits (57), Expect = 1.5
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 214 YFCREGICYRYFCRSCWLKVH 234
+ C E C + F LK H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEH 22
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.5 bits (60), Expect = 1.7
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNR 525
+ + G+P+ + ++ FS V +
Sbjct: 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLP 49
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 27.1 bits (59), Expect = 1.8
Identities = 4/35 (11%), Positives = 9/35 (25%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNR 525
I +P+ + +L + V
Sbjct: 8 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVL 42
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 26.8 bits (58), Expect = 1.9
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 25 NKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWPQ 57
N++ + G+P L + G V
Sbjct: 1 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVY 33
Score = 26.8 bits (58), Expect = 2.0
Identities = 3/14 (21%), Positives = 7/14 (50%)
Query: 492 NKIFIGGVPWDTPE 505
N++ + G+P
Sbjct: 1 NRVVVSGLPPSGSW 14
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 26.1 bits (57), Expect = 2.0
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 6/30 (20%)
Query: 204 CSECQTHSGP----YFCREGICYRYFCRSC 229
C C H C C + FC +C
Sbjct: 3 CKSCGAHFANTARKQTCL--DCKKNFCMTC 30
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 25.0 bits (55), Expect = 2.6
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 213 PYFCREGICYRYFCRSCWLKVHI 235
PY C+ C + F R L HI
Sbjct: 5 PYICQS--CGKGFSRPDHLNGHI 25
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 26.7 bits (58), Expect = 2.9
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMNRAEM 528
++I +P E L + FG V + + R
Sbjct: 18 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSS 55
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 25.3 bits (55), Expect = 3.1
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 210 HSG--PYFCREGICYRYFCRSCWLKVH 234
+ C C + F R ++ H
Sbjct: 13 EMPDKTFECLFPGCTKTFKRRYNIRSH 39
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 26.5 bits (58), Expect = 3.3
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 493 KIFIGGVPWDTPEYLLLTVFSQFGPVKAVVMN 524
+I + + + +L +FS+FG V ++
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITF 40
Score = 26.5 bits (58), Expect = 3.8
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 26 KIFIGGVPWDTPEYLLLTVFSQFGPVKVEW 55
+I + + + +L +FS+FG V
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKII 38
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 26.2 bits (57), Expect = 3.6
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 6/49 (12%)
Query: 200 EDNVCSECQTH----SGPYFCREGICYRYFCRSCWLKVHIGEYSQHDPI 244
++ C C Y C+ C R FC C + + +
Sbjct: 8 MESRCYGCAVKFTLFKKEYGCKN--CGRAFCNGCLSFSALVPRAGNTQQ 54
>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 128
Score = 26.8 bits (59), Expect = 3.7
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 5/31 (16%)
Query: 213 PYFCREGICYRYFCRSCWLKVHIGEYSQHDP 243
P+ CR G C +C V G+
Sbjct: 60 PFSCRAGACA-----NCAAIVLEGDIDMDMQ 85
>d1osma_ f.4.3.1 (A:) Porin {Klebsiella pneumoniae [TaxId: 573]}
Length = 342
Score = 27.5 bits (60), Expect = 3.7
Identities = 13/115 (11%), Positives = 29/115 (25%), Gaps = 5/115 (4%)
Query: 341 YSPYYQTGGSTDYFSYNNAPSHLNLNGSMTDSSNL-----DNIEDLLASLSLNNTGQSNV 395
Y Y TD ++ + N + ++ + + L+ L+ Q
Sbjct: 95 YGVVYDVTSWTDVLPEFGGDTYGSDNFLQSRANGVATYRNSDFFGLVDGLNFALQYQGKN 154
Query: 396 RANGTAGSVPSPHTSPLNSPRSSGARHSPPSNGGYYGGGGGGQYLHNGDGGGQGG 450
+ G+ + + + G + G G D
Sbjct: 155 GSVSGEGATNNGRGALKQNGDGFGTSVTYDIFDGISAGFAYANSKRTDDQNQLLL 209
>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 25.6 bits (56), Expect = 3.9
Identities = 13/44 (29%), Positives = 16/44 (36%)
Query: 376 DNIEDLLASLSLNNTGQSNVRANGTAGSVPSPHTSPLNSPRSSG 419
++ L NT NG G VPS + S SSG
Sbjct: 36 QKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPSSG 79
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase,
phosphotransferase subunit DhaM {Lactococcus lactis
[TaxId: 1358]}
Length = 123
Score = 26.6 bits (59), Expect = 4.0
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 127 HGRLTAQALYNVMNDLFGDVVYAGID 152
H A L ++ ++ ++ I
Sbjct: 10 HSPEIASGLKKLIREVAKNISLTAIG 35
>d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 193
Score = 27.2 bits (60), Expect = 4.2
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 456 DIAARHHRSSANSQIPQKTWEGVLPLRTQFSDEI 489
+ + + W GVLP++ S+
Sbjct: 143 TFSMKARTGPPHDTSTDDIWSGVLPIQHTISEAG 176
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 26.2 bits (57), Expect = 4.7
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 24 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKVEWP 56
+ + + G+P+ E + FS P++V
Sbjct: 15 GHCVHMRGLPYRATENDIYNFFSPLNPMRVHIE 47
Score = 25.9 bits (56), Expect = 6.3
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 491 SNKIFIGGVPWDTPEYLLLTVFSQFGPVKAVVM 523
+ + + G+P+ E + FS P++ +
Sbjct: 15 GHCVHMRGLPYRATENDIYNFFSPLNPMRVHIE 47
>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 69
Score = 24.7 bits (54), Expect = 7.4
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 395 VRANGTAGSVPSPHTSPLNSPRSSG 419
+G PS + P +S SSG
Sbjct: 45 GSIGDRSGIFPSNYVKPKDSGPSSG 69
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 25.1 bits (54), Expect = 8.7
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 109 QGHSTKLEPGKTIFVGALHGRLTAQALYNVMN 140
G K+ + V L + L +
Sbjct: 6 SGSHHKVSVSPVVHVRGLCESVVEADLVEALE 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.413
Gapped
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,039,152
Number of extensions: 98680
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 180
Length of query: 534
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 444
Effective length of database: 1,171,896
Effective search space: 520321824
Effective search space used: 520321824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.7 bits)