BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy37
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/100 (67%), Positives = 81/100 (81%), Gaps = 8/100 (8%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
G RLKEGA+INKSL TLG VIS+LAE+ + KK+ FIPYRDSVLTWLL+++LGG
Sbjct: 262 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 321
Query: 216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 255
NS+T M+AA+SPAD+NY ETLSTLRYA+RAK I N +VN
Sbjct: 322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 62/88 (70%), Gaps = 5/88 (5%)
Query: 63 SGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSF-DPSSPQFASQEQVFNDLGMDVVDAAF 121
SG T T++ K + +P K F+FD+SYWS P +ASQ+QV+ D+G +++ AF
Sbjct: 31 SGSTTTIVNPKQPKE-TP---KSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAF 86
Query: 122 EGYNACVFAYGQTGSGKTFTMMGSKARN 149
EGYN C+FAYGQTG+GK++TMMG + ++
Sbjct: 87 EGYNVCIFAYGQTGAGKSYTMMGKQEKD 114
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 11 KDFTFDHSYWSF-DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
K F+FD+SYWS P +ASQ+QV+ D+G +++ AFEGYN C+FAYGQTG+GK++TM
Sbjct: 48 KSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107
Query: 70 MGSK 73
MG +
Sbjct: 108 MGKQ 111
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/100 (67%), Positives = 81/100 (81%), Gaps = 8/100 (8%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
G RLKEGA+INKSL TLG VIS+LAE+ + KK+ FIPYRDSVLTWLL+++LGG
Sbjct: 262 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 321
Query: 216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 255
NS+T M+AA+SPAD+NY ETLSTLRYA+RAK I N +VN
Sbjct: 322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 60/88 (68%), Gaps = 5/88 (5%)
Query: 63 SGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSF-DPSSPQFASQEQVFNDLGMDVVDAAF 121
SG T T++ K + K F+FD+SYWS P +ASQ+QV+ D+G +++ AF
Sbjct: 31 SGSTTTIVNPK----QPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAF 86
Query: 122 EGYNACVFAYGQTGSGKTFTMMGSKARN 149
EGYN C+FAYGQTG+GK++TMMG + ++
Sbjct: 87 EGYNVCIFAYGQTGAGKSYTMMGKQEKD 114
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 11 KDFTFDHSYWSF-DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
K F+FD+SYWS P +ASQ+QV+ D+G +++ AFEGYN C+FAYGQTG+GK++TM
Sbjct: 48 KSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107
Query: 70 MGSK 73
MG +
Sbjct: 108 MGKQ 111
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/100 (67%), Positives = 81/100 (81%), Gaps = 8/100 (8%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
G RLKEGA+INKSL TLG VIS+LAE+ + KK+ FIPYRDSVLTWLL+++LGG
Sbjct: 278 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 337
Query: 216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 255
NS+T M+AA+SPAD+NY ETLSTLRYA+RAK I N +VN
Sbjct: 338 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 377
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 60/88 (68%), Gaps = 5/88 (5%)
Query: 63 SGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSF-DPSSPQFASQEQVFNDLGMDVVDAAF 121
SG T T++ K + K F+FD+SYWS P +ASQ+QV+ D+G +++ AF
Sbjct: 47 SGSTTTIVNPK----QPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAF 102
Query: 122 EGYNACVFAYGQTGSGKTFTMMGSKARN 149
EGYN C+FAYGQTG+GK++TMMG + ++
Sbjct: 103 EGYNVCIFAYGQTGAGKSYTMMGKQEKD 130
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 11 KDFTFDHSYWSF-DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
K F+FD+SYWS P +ASQ+QV+ D+G +++ AFEGYN C+FAYGQTG+GK++TM
Sbjct: 64 KSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 123
Query: 70 MGSK 73
MG +
Sbjct: 124 MGKQ 127
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/100 (67%), Positives = 81/100 (81%), Gaps = 8/100 (8%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
G RLKEGA+INKSL TLG VIS+LAE+ + KK+ FIPYRDSVLTWLL+++LGG
Sbjct: 262 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 321
Query: 216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 255
NS+T M+AA+SPAD+NY ETLSTLRYA+RAK I N +VN
Sbjct: 322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 60/88 (68%), Gaps = 5/88 (5%)
Query: 63 SGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSF-DPSSPQFASQEQVFNDLGMDVVDAAF 121
SG T T++ K + K F+FD+SYWS P +ASQ+QV+ D+G +++ AF
Sbjct: 31 SGSTTTIVNPKQPKETP----KSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAF 86
Query: 122 EGYNACVFAYGQTGSGKTFTMMGSKARN 149
EGYN C+FAYGQTG+GK++TMMG + ++
Sbjct: 87 EGYNVCIFAYGQTGAGKSYTMMGKQEKD 114
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 11 KDFTFDHSYWSF-DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
K F+FD+SYWS P +ASQ+QV+ D+G +++ AFEGYN C+FAYGQTG+GK++TM
Sbjct: 48 KSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107
Query: 70 MGSK 73
MG +
Sbjct: 108 MGKQ 111
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 77/104 (74%), Gaps = 3/104 (2%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G+RLKE IN SL LG+VIS+L + KST IPYRDS LT LL+DSLGGN+KT+M+A
Sbjct: 272 GERLKEATKINLSLSALGNVISALVD---GKSTHIPYRDSKLTRLLQDSLGGNAKTVMVA 328
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELH 267
+ PA N ETL+TLRYANRAKNI NKP VNEDP ++RE
Sbjct: 329 NVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQ 372
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
K FTFD Y D ++ QF ++ F L VD+ +G+N +FAYGQTG+GKT+TM
Sbjct: 68 KTFTFDAVY---DWNAKQFELYDETFRPL----VDSVLQGFNGTIFAYGQTGTGKTYTME 120
Query: 71 GSKATTDNSPDAHKDFTFDHSYWSFDPSSPQ 101
G + D +FDH + S Q
Sbjct: 121 GIRG--DPEKRGVIPNSFDHIFTHISRSQNQ 149
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
K FTFD Y D ++ QF ++ F L VD+ +G+N +FAYGQTG+GKT+TM
Sbjct: 68 KTFTFDAVY---DWNAKQFELYDETFRPL----VDSVLQGFNGTIFAYGQTGTGKTYTME 120
Query: 144 GSKA 147
G +
Sbjct: 121 GIRG 124
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 73/86 (84%), Gaps = 2/86 (2%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELST--KKSTFIPYRDSVLTWLLKDSLGGNSKTI 220
AGDRLKEG++INKSL TLG VIS+LA+ S K+ F+PYRDSVLTWLLKDSLGGNSKT
Sbjct: 263 AGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTA 322
Query: 221 MIAAISPADVNYSETLSTLRYANRAK 246
M+A +SPA NY ETLSTLRYA+RAK
Sbjct: 323 MVATVSPAADNYDETLSTLRYADRAK 348
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 11 KDFTFDHSYWSFDPS-SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
K F +DH +WS D S ++A Q+ VF LG +++ AF+GYNAC+FAYGQTGSGK++TM
Sbjct: 51 KVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110
Query: 70 MGS 72
MG+
Sbjct: 111 MGT 113
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 84 KDFTFDHSYWSFDPS-SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142
K F +DH +WS D S ++A Q+ VF LG +++ AF+GYNAC+FAYGQTGSGK++TM
Sbjct: 51 KVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110
Query: 143 MGS 145
MG+
Sbjct: 111 MGT 113
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 77/101 (76%), Gaps = 3/101 (2%)
Query: 165 DRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAA 224
+R KE + IN SL LG+VI++LA +ST IPYRDS LT LL+DSLGGN+KTIM+A
Sbjct: 297 ERPKEASKINLSLSALGNVIAALA---GNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVAT 353
Query: 225 ISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRE 265
+ PA +Y E+LSTLR+ANRAKNI NKP VNEDP ++RE
Sbjct: 354 LGPASHSYDESLSTLRFANRAKNIKNKPRVNEDPKDTLLRE 394
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
K FTFD Y D SS Q ++++ ++D+ +G+N VFAYGQTG+GKT+TM
Sbjct: 68 KTFTFDAVY---DASS----KQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQ 120
Query: 71 GS 72
G+
Sbjct: 121 GT 122
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
K FTFD Y D SS Q ++++ ++D+ +G+N VFAYGQTG+GKT+TM
Sbjct: 68 KTFTFDAVY---DASS----KQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQ 120
Query: 144 GS 145
G+
Sbjct: 121 GT 122
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 141/302 (46%), Gaps = 66/302 (21%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
+ FTFD Y D +S + + F L +DA EG+N+ +FAYGQTG+GKT+TM
Sbjct: 56 RTFTFDAVY---DQTSCNYGIFQASFKPL----IDAVLEGFNSTIFAYGQTGAGKTWTMG 108
Query: 71 GSKATTDNSPDAHKDFTFDHSYWSFDPSSPQ-----FASQEQVFNDLGMDVV-------- 117
G+K P+ +F H + + + SS S +++N+ D++
Sbjct: 109 GNKEEPGAIPN-----SFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPL 163
Query: 118 ----------------------------DAAFEGYNACVFAYGQTGS-GKTFTMMGSKAR 148
D F + T S + M+ +
Sbjct: 164 KEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECS 223
Query: 149 NFGEGKDCV----CSIVE-AG-DRLKEGAHINKSLVTLGSVISSLAELSTKKSTFI---- 198
E K+ + ++V+ AG +R + ++LV + SL+ L S +
Sbjct: 224 EVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGAT 283
Query: 199 --PYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNE 256
PYRDS LT LL+DSLGGNSKT+M A ISPA NY ET+STLRYA+RAK I NKP +NE
Sbjct: 284 HIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINE 343
Query: 257 DP 258
DP
Sbjct: 344 DP 345
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 143/308 (46%), Gaps = 71/308 (23%)
Query: 8 DAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF 67
D K F FD + + + + V+ ++ ++D+A +GYN +FAYGQT SGKT+
Sbjct: 41 DGSKSFNFDRVFHGNETT-------KNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTY 93
Query: 68 TMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAA------- 120
TMMGS+ P A D F D S +++N+ D++
Sbjct: 94 TMMGSEDHLGVIPRAIHDI-FQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLI 152
Query: 121 -FEGYNACVFA--------------------------YGQTG----SGKTFTM--MGSKA 147
E N V+ YG+T S ++ T+ M ++
Sbjct: 153 IREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILES 212
Query: 148 RNFGEGKDCVCSIV-------------------EAGDRLKEGAHINKSLVTLGSVISSLA 188
R GE +C S+ AG RLKEG +IN+SL LG VI L+
Sbjct: 213 REKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLS 272
Query: 189 ELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248
+ + FI YRDS LT +L++SLGGN+KT +I I+P V++ ETL+ L++A+ AK +
Sbjct: 273 D--GQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSFDETLTALQFASTAKYM 328
Query: 249 INKPTVNE 256
N P VNE
Sbjct: 329 KNTPYVNE 336
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 140/324 (43%), Gaps = 81/324 (25%)
Query: 1 ATTDNSPDAHKDFTFDHSYWSFDPSSPQF--------ASQEQVFNDLGMDVVDAAFEGYN 52
A N+ + +FT +H W D + A+Q+ VF D +V +A +GYN
Sbjct: 23 AKERNAIRSVDEFTVEH-LWKDDKAKQHMYDRVFDGNATQDDVFEDTKY-LVQSAVDGYN 80
Query: 53 ACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDF----TFDHSYWSFDPSSPQFASQEQV 108
C+FAYGQTGSGKTFT+ G+ + +P A + D + +SF + +
Sbjct: 81 VCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDT 140
Query: 109 FNDL------------------GMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNF 150
DL GM V+ N V + KT GS+ R+
Sbjct: 141 LVDLLLPKQAKRLKLDIKKDSKGMVSVE------NVTVVSISTYEELKTIIQRGSEQRHT 194
Query: 151 ---------GEGKDCVCSIVEA--------------------GDRLK----------EGA 171
V I+E+ +R+K E
Sbjct: 195 TGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQ 254
Query: 172 HINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVN 231
INKSL LG VIS+L+ + IPYR+ LT L+ DSLGGN+KT+M ISPA+ N
Sbjct: 255 SINKSLSALGDVISALSS----GNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESN 310
Query: 232 YSETLSTLRYANRAKNIINKPTVN 255
ET ++L YA+R ++I+N P+ N
Sbjct: 311 LDETHNSLTYASRVRSIVNDPSKN 334
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 77/122 (63%), Gaps = 20/122 (16%)
Query: 153 GKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKS----------------- 195
G + S G RL+EG++INKSL TLG VI++LA+ + S
Sbjct: 302 GSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPA 361
Query: 196 -TFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTV 254
+ +PYRDSVLTWLLKDSLGGNSKT MIA ISP D Y ETLSTLRYA++AK I + V
Sbjct: 362 NSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPTD--YDETLSTLRYADQAKRIRTRAVV 419
Query: 255 NE 256
N+
Sbjct: 420 NQ 421
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 47/62 (75%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
K FTFD S+WS + +A+QE V++ LG + +D FEGY+ C+FAYGQTGSGK++TMM
Sbjct: 96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Query: 71 GS 72
G+
Sbjct: 156 GT 157
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 47/62 (75%)
Query: 84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
K FTFD S+WS + +A+QE V++ LG + +D FEGY+ C+FAYGQTGSGK++TMM
Sbjct: 96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Query: 144 GS 145
G+
Sbjct: 156 GT 157
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 132/281 (46%), Gaps = 67/281 (23%)
Query: 26 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKD 85
SPQ ASQ+ VF ++ +V + +G+N C+FAYGQTG+GKT+TM G T +N +
Sbjct: 57 SPQ-ASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEG---TAENPGINQRA 111
Query: 86 FTFDHSYWSFDPSSPQF---ASQEQVFNDLGMDVV--------------DAAFEGYNAC- 127
S S ++ S +++N++ D++ D + + Y
Sbjct: 112 LQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGL 171
Query: 128 -------------VFAYGQTGSGKTFTMMGS-KARNFG------EGKDCVCSIVEAGD-- 165
VF +G T FT + +R+ G DC + G
Sbjct: 172 TEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLN 231
Query: 166 ------------------RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTW 207
RL+E HINKSL LG VI++L + +P+R+S LT+
Sbjct: 232 LVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL----RSRQGHVPFRNSKLTY 287
Query: 208 LLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248
LL+DSL G+SKT+M+ +SP + N SETL +L++A R +++
Sbjct: 288 LLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 281 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNE 256
SPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 82 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 141
+ K +TFD F S+ Q V+ + ++D GYNA +FAYGQTG+GKTFT
Sbjct: 62 SRKTYTFD---MVFGASTKQI----DVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFT 114
Query: 142 MMGSKARN 149
M G ++ N
Sbjct: 115 MEGERSPN 122
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 9 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 68
+ K +TFD F S+ Q V+ + ++D GYNA +FAYGQTG+GKTFT
Sbjct: 62 SRKTYTFD---MVFGASTKQI----DVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFT 114
Query: 69 MMGSKA 74
M G ++
Sbjct: 115 MEGERS 120
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 281 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNE 256
SPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 82 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 141
+ K +TFD F S+ Q V+ + ++D GYN +FAYGQTG+GKTFT
Sbjct: 62 SRKTYTFD---MVFGASTKQI----DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 114
Query: 142 MMGSKARN 149
M G ++ N
Sbjct: 115 MEGERSPN 122
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 9 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 68
+ K +TFD F S+ Q V+ + ++D GYN +FAYGQTG+GKTFT
Sbjct: 62 SRKTYTFD---MVFGASTKQI----DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 114
Query: 69 MMGSKA 74
M G ++
Sbjct: 115 MEGERS 120
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 283 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 338
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNE 256
SPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 339 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 369
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 82 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 141
+ K +TFD F S+ Q V+ + ++D GYN +FAYGQTG+GKTFT
Sbjct: 64 SRKTYTFD---MVFGASTKQI----DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 116
Query: 142 MMGSKARN 149
M G ++ N
Sbjct: 117 MEGERSPN 124
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 19/89 (21%)
Query: 9 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 68
+ K +TFD F S+ Q V+ + ++D GYN +FAYGQTG+GKTFT
Sbjct: 64 SRKTYTFD---MVFGASTKQI----DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 116
Query: 69 MMGSKATTDNSPDAHKDFTFDHSYWSFDP 97
M G + SP+ +++T W DP
Sbjct: 117 MEGER-----SPN--EEYT-----WEEDP 133
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 281 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNE 256
SPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 82 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 141
+ K +TFD F S+ Q V+ + ++D GYN +FAYGQTG+GKTFT
Sbjct: 62 SRKTYTFD---MVFGASTKQI----DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 114
Query: 142 MMGSKARN 149
M G ++ N
Sbjct: 115 MEGERSPN 122
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 19/89 (21%)
Query: 9 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 68
+ K +TFD F S+ Q V+ + ++D GYN +FAYGQTG+GKTFT
Sbjct: 62 SRKTYTFD---MVFGASTKQI----DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 114
Query: 69 MMGSKATTDNSPDAHKDFTFDHSYWSFDP 97
M G + SP+ +++T W DP
Sbjct: 115 MEGER-----SPN--EEYT-----WEEDP 131
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 272 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 327
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNE 256
SPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 328 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 82 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 141
+ K +TFD F S+ Q V+ + ++D GYN +FAYGQTG+GKTFT
Sbjct: 53 SRKTYTFD---MVFGASTKQI----DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 105
Query: 142 MMGSKARN 149
M G ++ N
Sbjct: 106 MEGERSPN 113
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 19/89 (21%)
Query: 9 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 68
+ K +TFD F S+ Q V+ + ++D GYN +FAYGQTG+GKTFT
Sbjct: 53 SRKTYTFD---MVFGASTKQI----DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 105
Query: 69 MMGSKATTDNSPDAHKDFTFDHSYWSFDP 97
M G + SP+ +++T W DP
Sbjct: 106 MEGER-----SPN--EEYT-----WEEDP 122
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 280 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 335
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNE 256
SPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 336 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 366
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 82 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 141
+ K +TFD F S+ Q V+ + ++D GYN +FAYGQTG+GKTFT
Sbjct: 61 SRKTYTFD---MVFGASTKQI----DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 113
Query: 142 MMGSKARN 149
M G ++ N
Sbjct: 114 MEGERSPN 121
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 19/89 (21%)
Query: 9 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 68
+ K +TFD F S+ Q V+ + ++D GYN +FAYGQTG+GKTFT
Sbjct: 61 SRKTYTFD---MVFGASTKQI----DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 113
Query: 69 MMGSKATTDNSPDAHKDFTFDHSYWSFDP 97
M G + SP+ +++T W DP
Sbjct: 114 MEGER-----SPN--EEYT-----WEEDP 130
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 281 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNE 256
SPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 82 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 141
+ K +TFD F S+ Q V+ + ++D GYN +FAYGQTG+GKTFT
Sbjct: 62 SRKTYTFD---MVFGASTKQI----DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 114
Query: 142 MMGSKARN 149
M G ++ N
Sbjct: 115 MEGERSPN 122
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 19/89 (21%)
Query: 9 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 68
+ K +TFD F S+ Q V+ + ++D GYN +FAYGQTG+GKTFT
Sbjct: 62 SRKTYTFD---MVFGASTKQI----DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 114
Query: 69 MMGSKATTDNSPDAHKDFTFDHSYWSFDP 97
M G + SP+ +++T W DP
Sbjct: 115 MEGER-----SPN--EEYT-----WEEDP 131
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 281 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNE 256
SPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 82 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 141
+ K +TFD F S+ Q V+ + ++D GYN +FAYGQTG+GKTFT
Sbjct: 62 SRKTYTFD---MVFGASTKQI----DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 114
Query: 142 MMGSKARN 149
M G ++ N
Sbjct: 115 MEGERSPN 122
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 19/89 (21%)
Query: 9 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 68
+ K +TFD F S+ Q V+ + ++D GYN +FAYGQTG+GKTFT
Sbjct: 62 SRKTYTFD---MVFGASTKQI----DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 114
Query: 69 MMGSKATTDNSPDAHKDFTFDHSYWSFDP 97
M G + SP+ +++T W DP
Sbjct: 115 MEGER-----SPN--EEYT-----WEEDP 131
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G R EG +IN+SL+ LG+VI++LA+ S +K+ IPYR+S LT LLKDSLGGN +TIMIA
Sbjct: 272 GTRFVEGTNINRSLLALGNVINALAD-SKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIA 330
Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
A+SP+ V Y +T +TL+YANRAK+I
Sbjct: 331 AVSPSSVFYDDTYNTLKYANRAKDI 355
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 71 GSKATTDNS-PDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVF 129
G K T N +KD F FD + ++Q +VF ++ + GYN V
Sbjct: 56 GKKTTNQNVIKKQNKDLKF-----VFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVL 110
Query: 130 AYGQTGSGKTFTMMGS 145
AYG TG+GKT TM+GS
Sbjct: 111 AYGATGAGKTHTMLGS 126
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 72
+ FD + ++Q +VF ++ + GYN V AYG TG+GKT TM+GS
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS 126
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 67/87 (77%), Gaps = 4/87 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 266 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 321
Query: 226 SPADVNYSETLSTLRYANRAKNIINKP 252
SPA +N ETLSTL YA+RAKNI+NKP
Sbjct: 322 SPASLNLEETLSTLEYAHRAKNILNKP 348
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 82 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 141
+ K +TFD F S+ Q V+ + ++D GYN +FAYGQTG+GKTFT
Sbjct: 47 SRKTYTFD---MVFGASTKQI----DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 99
Query: 142 MMGSKARN 149
M G ++ N
Sbjct: 100 MEGERSPN 107
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 19/89 (21%)
Query: 9 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 68
+ K +TFD F S+ Q V+ + ++D GYN +FAYGQTG+GKTFT
Sbjct: 47 SRKTYTFD---MVFGASTKQI----DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 99
Query: 69 MMGSKATTDNSPDAHKDFTFDHSYWSFDP 97
M G + SP+ +++T W DP
Sbjct: 100 MEGER-----SPN--EEYT-----WEEDP 116
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 70/95 (73%), Gaps = 4/95 (4%)
Query: 162 EAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 221
E G R++E +IN+SL+TLG VI++L + ++ +PYR+S LT LL++SLGG +KT +
Sbjct: 279 EKGIRVRETVNINQSLLTLGRVITALVD----RAPHVPYRESKLTRLLQESLGGRTKTSI 334
Query: 222 IAAISPADVNYSETLSTLRYANRAKNIINKPTVNE 256
IA ISP + ETLSTL YA+RAKNI NKP VN+
Sbjct: 335 IATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
K FTFD S F P S Q V++ + +++ GYN VFAYGQTG+GKT TM+
Sbjct: 67 KKFTFDRS---FGPESKQC----DVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119
Query: 71 GSK 73
G++
Sbjct: 120 GNE 122
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Query: 84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
K FTFD S F P S Q V++ + +++ GYN VFAYGQTG+GKT TM+
Sbjct: 67 KKFTFDRS---FGPESKQC----DVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119
Query: 144 GSK 146
G++
Sbjct: 120 GNE 122
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Query: 153 GKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS 212
G + V G+RLKE IN SL+ LG+VIS+L + ++ + IPYRDS +T +LKDS
Sbjct: 252 GSERVLKTGSTGERLKESIQINSSLLALGNVISALGD-PQRRGSHIPYRDSKITRILKDS 310
Query: 213 LGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 246
LGGN+KT+MIA +SP+ ++ ETL+TL YA+RA+
Sbjct: 311 LGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
++ F + A QE V+ +++A FEG+NA VFAYGQTGSGKT+TM
Sbjct: 51 HFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 92 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142
++ F + A QE V+ +++A FEG+NA VFAYGQTGSGKT+TM
Sbjct: 51 HFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 69/105 (65%), Gaps = 3/105 (2%)
Query: 153 GKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS 212
G + V +G L+E INKSL LG VI++L + KS+ +PYRDS LT +L++S
Sbjct: 238 GSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTD---GKSSHVPYRDSKLTRILQES 294
Query: 213 LGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNED 257
LGGNS+T +I SP+ N +ETLSTLR+ RAK+I NK VN +
Sbjct: 295 LGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAE 339
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 60 QTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDA 119
++G T G T +S +A FTFD FD S Q +F+ VD
Sbjct: 23 ESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRV---FDMS----CKQSDIFDFSIKPTVDD 75
Query: 120 AFEGYNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCSIVE 162
GYN VFAYGQTG+GK++TMMG+ + +G+ + IVE
Sbjct: 76 ILNGYNGTVFAYGQTGAGKSYTMMGTSIDD-PDGRGVIPRIVE 117
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 3 TDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTG 62
T +S +A FTFD FD S Q +F+ VD GYN VFAYGQTG
Sbjct: 39 TVDSKEAQGSFTFDRV---FDMS----CKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTG 91
Query: 63 SGKTFTMMGSKATTDNSPDAH 83
+GK++TMMG T+ + PD
Sbjct: 92 AGKSYTMMG---TSIDDPDGR 109
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Query: 153 GKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS 212
G + V G+ KE IN SL+ LG+VIS+L + ++ + IPYRDS +T +LKDS
Sbjct: 252 GSERVLKTGSTGELRKESIQINSSLLALGNVISALGD-PQRRGSNIPYRDSKITRILKDS 310
Query: 213 LGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 246
LGGN+KT+MIA +SP+ ++ ETL+TL YA+RA+
Sbjct: 311 LGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
++ F + A QE V+ +++A FEG+NA VFAYGQTGSGKT+TM
Sbjct: 51 HFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 92 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142
++ F + A QE V+ +++A FEG+NA VFAYGQTGSGKT+TM
Sbjct: 51 HFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 61/92 (66%), Gaps = 4/92 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G L E +INKSL LG+VIS+LAE ST++PYRDS +T +L+DSLGGN +T ++
Sbjct: 245 GAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVI 300
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVN 255
SP+ N SET STL + RAK I N VN
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 31/52 (59%)
Query: 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71
++FD SQEQV+ND +V EGYN +FAYGQT SGK TM G
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEG 97
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 31/52 (59%)
Query: 93 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 144
++FD SQEQV+ND +V EGYN +FAYGQT SGK TM G
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEG 97
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 61/92 (66%), Gaps = 4/92 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G L E +INKSL LG+VIS+LAE ST++PYRDS +T +L+DSLGGN +T ++
Sbjct: 245 GAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVI 300
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVN 255
SP+ N SET STL + RAK I N VN
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 32/52 (61%)
Query: 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71
++FD SQEQV+ND +V EGYN +FAYGQT SGKT TM G
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 32/52 (61%)
Query: 93 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 144
++FD SQEQV+ND +V EGYN +FAYGQT SGKT TM G
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 4/91 (4%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
AG++LKE INKSL LG VI +L+ + IPYR+ LT L+ DSLGGN+KT+M
Sbjct: 254 AGNQLKEAQSINKSLSALGDVIGALSS----GNQHIPYRNHKLTMLMSDSLGGNAKTLMF 309
Query: 223 AAISPADVNYSETLSTLRYANRAKNIINKPT 253
+SPA+ N ET ++L YA+R + I+N P+
Sbjct: 310 VNVSPAESNLDETYNSLLYASRVRTIVNDPS 340
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 12 DFTFDHSYWSFDPSSPQF--------ASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS 63
+FT +H W D ASQ+ +F D +V +A +GYN C+FAYGQTGS
Sbjct: 42 EFTVEHP-WKDDKRKQHIYDRVFDMRASQDDIFEDTKY-LVQSAVDGYNVCIFAYGQTGS 99
Query: 64 GKTFTMMGSKATTDNSPDAHKDF 86
GKTFT+ G ++ +P A K+
Sbjct: 100 GKTFTIYGHESNPGLTPRATKEL 122
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 10/71 (14%)
Query: 85 DFTFDHSYWSFDPSSPQF--------ASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS 136
+FT +H W D ASQ+ +F D +V +A +GYN C+FAYGQTGS
Sbjct: 42 EFTVEHP-WKDDKRKQHIYDRVFDMRASQDDIFEDTKY-LVQSAVDGYNVCIFAYGQTGS 99
Query: 137 GKTFTMMGSKA 147
GKTFT+ G ++
Sbjct: 100 GKTFTIYGHES 110
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 3/94 (3%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G L E +INKSL LG+VIS+LA+ T IPYRDS LT +L++SLGGN++T ++
Sbjct: 252 GTVLDEAKNINKSLSALGNVISALAD---GNKTHIPYRDSKLTRILQESLGGNARTTIVI 308
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNED 257
SPA N SET STL + RAK + N VNE+
Sbjct: 309 CCSPASFNESETKSTLDFGRRAKTVKNVVCVNEE 342
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71
+ FD ASQE+V+N+ +V GYN +FAYGQT SGKT TM G
Sbjct: 53 YLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEG 104
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 93 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 144
+ FD ASQE+V+N+ +V GYN +FAYGQT SGKT TM G
Sbjct: 53 YLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEG 104
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 61/89 (68%), Gaps = 4/89 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
GDRLKE INKSL LG VI SL + K + +PYR+S LT+LLK SLGGNSKT+M
Sbjct: 630 GDRLKETQAINKSLSCLGDVIHSL---NLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFV 686
Query: 224 AISPADVNYSETLSTLRYANRAKNI-INK 251
ISP + +ET+++LR+A + N INK
Sbjct: 687 NISPLTKDLNETINSLRFATKVNNTRINK 715
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 15 FDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
F + + FD + S + VF +L ++ + +G N CVFAYGQTGSGKTFTM
Sbjct: 427 FSNLRFLFDKIFEREQSNDLVFEELSQ-LIQCSLDGTNVCVFAYGQTGSGKTFTM 480
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 88 FDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142
F + + FD + S + VF +L ++ + +G N CVFAYGQTGSGKTFTM
Sbjct: 427 FSNLRFLFDKIFEREQSNDLVFEELSQ-LIQCSLDGTNVCVFAYGQTGSGKTFTM 480
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G L E +INKSL LG+VIS+LAE ST++PYRDS +T +L+DSLGGN +T ++
Sbjct: 245 GAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVI 300
Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
SP+ N SET STL + RAK I
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTI 325
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 32/52 (61%)
Query: 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71
++FD SQEQV+ND +V EGYN +FAYGQT SGKT TM G
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 32/52 (61%)
Query: 93 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 144
++FD SQEQV+ND +V EGYN +FAYGQT SGKT TM G
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 4/93 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G RLKE IN SL LG V+ +L + + +PYRDS LT LL+DSLGG++ +I+IA
Sbjct: 267 GLRLKESGAINTSLFVLGKVVDALNQGLPR----VPYRDSKLTRLLQDSLGGSAHSILIA 322
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNE 256
I+P Y +T+S L +A R+K +IN+P NE
Sbjct: 323 NIAPERRFYLDTVSALNFAARSKEVINRPFTNE 355
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNS 79
+ FD + ++Q+ ++ ++ EG NA V AYG TG+GKT TM+GS
Sbjct: 67 YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVI 126
Query: 80 PDAHKDF 86
P A D
Sbjct: 127 PRALMDL 133
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 93 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
+ FD + ++Q+ ++ ++ EG NA V AYG TG+GKT TM+GS
Sbjct: 67 YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGS 119
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 57/82 (69%), Gaps = 3/82 (3%)
Query: 174 NKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYS 233
NKSL LG+VIS+LAE TK T +PYRDS +T +L+DSLGGN +T ++ SP+ N +
Sbjct: 1 NKSLSALGNVISALAE-GTK--THVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEA 57
Query: 234 ETLSTLRYANRAKNIINKPTVN 255
ET STL + RAK I N +VN
Sbjct: 58 ETKSTLMFGQRAKTIKNTVSVN 79
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 58/84 (69%), Gaps = 3/84 (3%)
Query: 172 HINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVN 231
+INKSL LG+VIS+LAE TK T +PYRDS +T +L+DSL GN +T ++ SP+ N
Sbjct: 3 NINKSLSALGNVISALAE-GTK--THVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFN 59
Query: 232 YSETLSTLRYANRAKNIINKPTVN 255
+ET STL + RAK I N +VN
Sbjct: 60 EAETKSTLMFGQRAKTIKNTVSVN 83
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
GDRL+E +INKSL LG VI +L + + K IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 268 VGDRLRETQNINKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMF 326
Query: 223 AAISPADVNYSETLSTLRYANRA 245
ISP+ + +ETL++LR+A++
Sbjct: 327 VNISPSSSHINETLNSLRFASKV 349
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
+ FD Q + VF ++G +V ++ +GYN C+FAYGQTGSGKTFTM+
Sbjct: 65 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTML 114
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 93 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
+ FD Q + VF ++G +V ++ +GYN C+FAYGQTGSGKTFTM+
Sbjct: 65 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTML 114
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
GDRL+E +INKSL LG VI +L + + K IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 257 VGDRLRETQNINKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMF 315
Query: 223 AAISPADVNYSETLSTLRYANRA 245
ISP+ + +ETL++LR+A++
Sbjct: 316 VNISPSSSHINETLNSLRFASKV 338
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
+ FD Q + VF ++G +V ++ +GYN C+FAYGQTGSGKTFTM+
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTML 103
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 93 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
+ FD Q + VF ++G +V ++ +GYN C+FAYGQTGSGKTFTM+
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTML 103
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
GDRL+E +INKSL LG VI +L + + K IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 256 VGDRLRETQNINKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMF 314
Query: 223 AAISPADVNYSETLSTLRYANRA 245
ISP+ + +ETL++LR+A++
Sbjct: 315 VNISPSSSHINETLNSLRFASKV 337
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
+ FD Q + VF ++G +V ++ +GYN C+FAYGQTGSGKTFTM+
Sbjct: 53 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTML 102
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 93 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
+ FD Q + VF ++G +V ++ +GYN C+FAYGQTGSGKTFTM+
Sbjct: 53 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTML 102
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
GDRL+E +INKSL LG VI +L + + K IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 257 VGDRLRETQNINKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMF 315
Query: 223 AAISPADVNYSETLSTLRYANRA 245
ISP+ + +ETL++LR+A++
Sbjct: 316 VNISPSSSHINETLNSLRFASKV 338
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
+ FD Q + VF ++G +V ++ +GYN C+FAYGQTGSGKTFTM+
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTML 103
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 93 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
+ FD Q + VF ++G +V ++ +GYN C+FAYGQTGSGKTFTM+
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTML 103
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 66/96 (68%), Gaps = 5/96 (5%)
Query: 151 GEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAEL-STKKSTFIPYRDSVLTWLL 209
G + V +V GDRL+E +INKSL LG VI +L + STK+ IP+R+S LT+LL
Sbjct: 303 GSERINVSQVV--GDRLRETQNINKSLSALGDVIHALGQPDSTKR--HIPFRNSKLTYLL 358
Query: 210 KDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRA 245
+ SL G+SKT+M ISP+ + +ETL++LR+A++
Sbjct: 359 QYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 394
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
+ FD Q + VF ++G +V ++ +GYN +FAYGQTGSGKTFTM+
Sbjct: 110 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVAIFAYGQTGSGKTFTML 159
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 93 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
+ FD Q + VF ++G +V ++ +GYN +FAYGQTGSGKTFTM+
Sbjct: 110 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVAIFAYGQTGSGKTFTML 159
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 58/80 (72%), Gaps = 4/80 (5%)
Query: 165 DRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAA 224
+RL+E IN SL TLG VI +L + K + +PYR+S LT+LL++SLGG++K +M
Sbjct: 297 ERLRETQAINSSLSTLGLVIMAL----SNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVN 352
Query: 225 ISPADVNYSETLSTLRYANR 244
ISP + N SE+L++LR+A++
Sbjct: 353 ISPLEENVSESLNSLRFASK 372
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 8/66 (12%)
Query: 6 SPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK 65
+P DF+FD + P + Q++VF ++ M +V +A +GY C+FAYGQTGSGK
Sbjct: 78 APPPRHDFSFDRVF-------PPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGK 129
Query: 66 TFTMMG 71
TFTM G
Sbjct: 130 TFTMEG 135
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 8/66 (12%)
Query: 79 SPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK 138
+P DF+FD + P + Q++VF ++ M +V +A +GY C+FAYGQTGSGK
Sbjct: 78 APPPRHDFSFDRVF-------PPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGK 129
Query: 139 TFTMMG 144
TFTM G
Sbjct: 130 TFTMEG 135
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 153 GKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS 212
G + + S + G+RL+E INKSL LG VI +L +K IP+R+S LT+LL+ S
Sbjct: 271 GSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKR-HIPFRNSKLTYLLQYS 329
Query: 213 LGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN 247
L G+SKT+M ISPA ++ +ET+++LR+A++ N
Sbjct: 330 LIGSSKTLMFVNISPAALHLNETINSLRFASKVNN 364
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
+ FD Q + +++F ++G ++ ++ +GYN C+FAYGQTGSGKT+TM+
Sbjct: 76 FKFDKIFDQQETNDEIFKEVGQ-LIQSSLDGYNVCIFAYGQTGSGKTYTML 125
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 93 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
+ FD Q + +++F ++G ++ ++ +GYN C+FAYGQTGSGKT+TM+
Sbjct: 76 FKFDKIFDQQETNDEIFKEVGQ-LIQSSLDGYNVCIFAYGQTGSGKTYTML 125
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
GDRL+E +I KSL LG VI +L + + K IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 257 VGDRLRETQNIKKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMF 315
Query: 223 AAISPADVNYSETLSTLRYANRA 245
ISP+ + +ETL++LR+A++
Sbjct: 316 VNISPSSSHINETLNSLRFASKV 338
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
+ FD Q + VF ++G +V ++ +GYN C+FAYGQTGSGKTFTM+
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTML 103
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 93 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
+ FD Q + VF ++G +V ++ +GYN C+FAYGQTGSGKTFTM+
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTML 103
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 153 GKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS 212
G + + S G+RL+E +INKSL LG VI +L K +IP+R+S LT+LL+ S
Sbjct: 250 GSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKR-YIPFRNSKLTYLLQYS 308
Query: 213 LGGNSKTIMIAAISPADVNYSETLSTLRYANRA 245
L G+SKT+M I P + SETL++LR+A++
Sbjct: 309 LVGDSKTLMFVNIPPDPNHISETLNSLRFASKV 341
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 16/84 (19%)
Query: 12 DFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71
+F FD F+PS + +++F ++ +V ++ +GYN C+FAYGQTGSGKT+TM+
Sbjct: 54 NFQFD---MIFEPSH----TNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTML- 104
Query: 72 SKATTDNSPDAHKDFTFDHSY-WS 94
N+ D T H + W+
Sbjct: 105 ------NAGDGMIPMTLSHIFKWT 122
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 8/61 (13%)
Query: 85 DFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 144
+F FD F+PS + +++F ++ +V ++ +GYN C+FAYGQTGSGKT+TM+
Sbjct: 54 NFQFD---MIFEPSH----TNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLN 105
Query: 145 S 145
+
Sbjct: 106 A 106
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 169 EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISP 227
EGA INKSL+ L I +L + P+R S LT +L+DS +G NS+T MIA ISP
Sbjct: 344 EGAEINKSLLALKECIRALG----RNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISP 399
Query: 228 ADVNYSETLSTLRYANRAKNI 248
+ TL+TLRYANR K +
Sbjct: 400 GMASCENTLNTLRYANRVKEL 420
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 86 FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
F FD ++FD S+P E V+ +V+ FE A FAYGQTGSGKT TM G
Sbjct: 141 FRFD---YAFDDSAPN----EMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGD 193
Query: 146 KARNFGEGKDC 156
+ G+ +DC
Sbjct: 194 FS---GKNQDC 201
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 13 FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71
F FD ++FD S+P E V+ +V+ FE A FAYGQTGSGKT TM G
Sbjct: 141 FRFD---YAFDDSAPN----EMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGG 192
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 169 EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISP 227
EGA INKSL+ L I +L + P+R+S LT +L+DS +G NS+T MIA ISP
Sbjct: 326 EGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISP 381
Query: 228 ADVNYSETLSTLRYANRAKNI 248
+ TL+TLRYA+R K +
Sbjct: 382 GISSCEYTLNTLRYADRVKEL 402
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 5 NSPDAHKDFT--FDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTG 62
+ P D T ++ + FD + + AS E V+ +V FEG A FAYGQTG
Sbjct: 106 HEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTG 165
Query: 63 SGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFE 122
SGKT TM G + S +A K ++ + + +L ++V FE
Sbjct: 166 SGKTHTMGGD--LSGKSQNASKGI------YAMASRDVFLLKNQPRYRNLNLEVYVTFFE 217
Query: 123 GYNACVFAYGQTGSGKTFTMMGSKAR 148
YN GK F ++ KA+
Sbjct: 218 IYN-----------GKVFDLLNKKAK 232
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 169 EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISP 227
EGA INKSL+ L I +L + P+R+S LT +L+DS +G NS+T MIA ISP
Sbjct: 306 EGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIATISP 361
Query: 228 ADVNYSETLSTLRYANRAKNI 248
+ TL+TLRYA+R K +
Sbjct: 362 GISSCEYTLNTLRYADRVKEL 382
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 5 NSPDAHKDFT--FDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTG 62
+ P D T ++ + FD + + AS E V+ +V FEG A FAYGQTG
Sbjct: 86 HEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTG 145
Query: 63 SGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFE 122
SGKT TM G + + +A K ++ + + LG++V FE
Sbjct: 146 SGKTHTMGGD--LSGKAQNASKGI------YAMASRDVFLLKNQPCYRKLGLEVYVTFFE 197
Query: 123 GYNACVFAYGQTGSGKTFTMMGSKAR 148
YN GK F ++ KA+
Sbjct: 198 IYN-----------GKLFDLLNKKAK 212
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 169 EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISP 227
EGA INKSL+ L I +L + P+R+S LT +L+DS +G NS+T MIA ISP
Sbjct: 254 EGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISP 309
Query: 228 ADVNYSETLSTLRYANRAKNI 248
+ TL+TLRYA+R K +
Sbjct: 310 GISSCEYTLNTLRYADRVKEL 330
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 5 NSPDAHKDFT--FDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTG 62
+ P D T ++ + FD + + AS E V+ +V FEG A FAYGQTG
Sbjct: 34 HEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTG 93
Query: 63 SGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFE 122
SGKT TM G + S +A K ++ + + +L ++V FE
Sbjct: 94 SGKTHTMGGD--LSGKSQNASKGI------YAMASRDVFLLKNQPRYRNLNLEVYVTFFE 145
Query: 123 GYNACVFAYGQTGSGKTFTMMGSKAR 148
YN GK F ++ KA+
Sbjct: 146 IYN-----------GKVFDLLNKKAK 160
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 169 EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPA 228
+GA+IN+SL+ L I ++ IP+RDS LT +L+D G SK+IMIA ISP
Sbjct: 256 DGANINRSLLALKECIRAMDS----DKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPT 311
Query: 229 DVNYSETLSTLRYANRAKN 247
+TL+TLRY++R KN
Sbjct: 312 ISCCEQTLNTLRYSSRVKN 330
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 22 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACV---FAYGQTGSGKTFTMMGSK 73
FD + F E L +D+ + N CV FAYGQTGSGKT+TM+GS+
Sbjct: 58 FDDTVDNFTVYENTIKPLIIDLYE------NGCVCSCFAYGQTGSGKTYTMLGSQ 106
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 95 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACV---FAYGQTGSGKTFTMMGSK 146
FD + F E L +D+ + N CV FAYGQTGSGKT+TM+GS+
Sbjct: 58 FDDTVDNFTVYENTIKPLIIDLYE------NGCVCSCFAYGQTGSGKTYTMLGSQ 106
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 168 KEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISP 227
+EG +IN L+++ V+ S+A T IPYRDSVLT +L+ SL S +A ISP
Sbjct: 259 QEGVNINLGLLSINKVVMSMA----AGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISP 314
Query: 228 ADVNYSETLSTLRYANRAKNI 248
+ SETLSTLR+ AK +
Sbjct: 315 HQCDLSETLSTLRFGTSAKKL 335
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
K D + + FD + P SQ++++ L + +VD EG+ AYGQTG+GK+++M
Sbjct: 54 KSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142
K D + + FD + P SQ++++ L + +VD EG+ AYGQTG+GK+++M
Sbjct: 54 KSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 168 KEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISP 227
+EG +IN L+++ V+ S+A T IPYRDSVLT +L+ SL S +A ISP
Sbjct: 259 QEGVNINLGLLSINKVVMSMA----AGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISP 314
Query: 228 ADVNYSETLSTLRYANRAK 246
+ SETLSTLR+ AK
Sbjct: 315 HQCDLSETLSTLRFGTSAK 333
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
K D + + FD + P SQ++++ L + +VD EG+ AYGQTG+GK+++M
Sbjct: 54 KSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142
K D + + FD + P SQ++++ L + +VD EG+ AYGQTG+GK+++M
Sbjct: 54 KSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
R+ E +IN+SL L +VI +L + K IPYR+S LT LL SLGGNSKT+M +
Sbjct: 298 RMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINV 353
Query: 226 SPADVNYSETLSTLRYA 242
SP + E++ +LR+A
Sbjct: 354 SPFQDCFQESVKSLRFA 370
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 6 SPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK 65
S DA +SFD +SQ +F ++ ++ +A +GYN C+FAYGQTGSGK
Sbjct: 88 SIDAQAKSKMGQQIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGK 146
Query: 66 TFTMMGSKATTDNSPDAHKDFTFD 89
T+TM G + P D FD
Sbjct: 147 TYTMDGVPESVGVIPRT-VDLLFD 169
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 79 SPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK 138
S DA +SFD +SQ +F ++ ++ +A +GYN C+FAYGQTGSGK
Sbjct: 88 SIDAQAKSKMGQQIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGK 146
Query: 139 TFTMMG 144
T+TM G
Sbjct: 147 TYTMDG 152
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
R+ E +IN+SL L +VI +L + K IPYR+S LT LL SLGGNSKT+M +
Sbjct: 312 RMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINV 367
Query: 226 SPADVNYSETLSTLRYA 242
SP + E++ +LR+A
Sbjct: 368 SPFQDCFQESVKSLRFA 384
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 6 SPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK 65
S DA +SFD +SQ +F ++ ++ +A +GYN C+FAYGQTGSGK
Sbjct: 102 SIDAQAKSKMGQQIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGK 160
Query: 66 TFTMMGSKATTDNSPDAHKDFTFD 89
T+TM G + P D FD
Sbjct: 161 TYTMDGVPESVGVIPRT-VDLLFD 183
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 79 SPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK 138
S DA +SFD +SQ +F ++ ++ +A +GYN C+FAYGQTGSGK
Sbjct: 102 SIDAQAKSKMGQQIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGK 160
Query: 139 TFTMMG 144
T+TM G
Sbjct: 161 TYTMDG 166
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
R+ E +IN+SL L +VI +L + K IPYR+S LT LL SLGGNSKT+M +
Sbjct: 304 RMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINV 359
Query: 226 SPADVNYSETLSTLRYA 242
SP + E++ +LR+A
Sbjct: 360 SPFQDCFQESVKSLRFA 376
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 6 SPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK 65
S DA +SFD +SQ +F ++ ++ +A +GYN C+FAYGQTGSGK
Sbjct: 94 SIDAQAKSKMGQQIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGK 152
Query: 66 TFTMMGSKATTDNSPDAHKDFTFD 89
T+TM G + P D FD
Sbjct: 153 TYTMDGVPESVGVIPRT-VDLLFD 175
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 79 SPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK 138
S DA +SFD +SQ +F ++ ++ +A +GYN C+FAYGQTGSGK
Sbjct: 94 SIDAQAKSKMGQQIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGK 152
Query: 139 TFTMMG 144
T+TM G
Sbjct: 153 TYTMDG 158
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
R+ E +IN+SL L +VI +L + K IPYR+S LT LL SLGGNSKT+M +
Sbjct: 301 RMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINV 356
Query: 226 SPADVNYSETLSTLRYA 242
SP + E++ +LR+A
Sbjct: 357 SPFQDCFQESVKSLRFA 373
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 6 SPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK 65
S DA +SFD +SQ +F ++ ++ +A +GYN C+FAYGQ+GSGK
Sbjct: 91 SIDAQAKSKMGQQIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQSGSGK 149
Query: 66 TFTMMGSKATTDNSPDAHKDFTFD 89
T+TM G + P D FD
Sbjct: 150 TYTMDGVPESVGVIPRT-VDLLFD 172
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 79 SPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK 138
S DA +SFD +SQ +F ++ ++ +A +GYN C+FAYGQ+GSGK
Sbjct: 91 SIDAQAKSKMGQQIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQSGSGK 149
Query: 139 TFTMMG 144
T+TM G
Sbjct: 150 TYTMDG 155
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G LKE +INKSL L I +L + +K IP+R LT LKDSLGGN +++
Sbjct: 278 GQVLKEATYINKSLSFLEQAIIALGD---QKRDHIPFRQCKLTHALKDSLGGNCNMVLVT 334
Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
I ETLS+LR+A+R K +
Sbjct: 335 NIYGEAAQLEETLSSLRFASRMKLV 359
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 20 WSFDPSSPQF-ASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 72
WSF ASQ+ V+ + DVV A +GYN + YGQTG+GKT+TMMG+
Sbjct: 72 WSFKLDGVLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGA 125
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 93 WSFDPSSPQF-ASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
WSF ASQ+ V+ + DVV A +GYN + YGQTG+GKT+TMMG+
Sbjct: 72 WSFKLDGVLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGA 125
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
R+ E +I +SL L +VI +L + K IPYR+S LT LL SLGGNSKT+M +
Sbjct: 301 RMTETKNIKRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINV 356
Query: 226 SPADVNYSETLSTLRYA 242
SP + E++ +LR+A
Sbjct: 357 SPFQDCFQESVKSLRFA 373
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 6 SPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK 65
S DA +SFD +SQ +F ++ ++ +A +GYN C+FAYGQTGSGK
Sbjct: 91 SIDAQAKSKMGQQIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGK 149
Query: 66 TFTMMGSKATTDNSPDAHKDFTFD 89
T+TM G + P D FD
Sbjct: 150 TYTMDGVPESVGVIPRT-VDLLFD 172
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 79 SPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK 138
S DA +SFD +SQ +F ++ ++ +A +GYN C+FAYGQTGSGK
Sbjct: 91 SIDAQAKSKMGQQIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGK 149
Query: 139 TFTMMG 144
T+TM G
Sbjct: 150 TYTMDG 155
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 31/52 (59%)
Query: 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71
+ FD P +QEQV+N +V EGYN +FAYGQT SGKT TM G
Sbjct: 46 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 31/52 (59%)
Query: 93 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 144
+ FD P +QEQV+N +V EGYN +FAYGQT SGKT TM G
Sbjct: 46 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A
Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A
Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 23/138 (16%)
Query: 114 MDVVDAAFE-GYNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCS----IVEAGDRLK 168
+ ++D E Y CV G GSGK+ T+ + E S ++E DRLK
Sbjct: 12 LQLLDNRIEDNYRVCVILVGSPGSGKS-TIAEELXQIINEKYHTFLSEHPNVIEVNDRLK 70
Query: 169 EGAHINKSLVTLGSVISSLAEL---------STKKSTFIPYRDSVLTWLLKD-----SLG 214
++ SL TL + +AE+ + F P + S LT ++ + G
Sbjct: 71 PMVNLVDSLKTLQP--NKVAEMIENQGLFKDHVEDVNFQPVKYSALTSNNEEXTAVVARG 128
Query: 215 GNSKTIMIAAI-SPADVN 231
G + I IAA+ +P +VN
Sbjct: 129 GTANAIRIAAVDNPVNVN 146
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 464
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 9 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 68
A KD FD+ S +SP++A +G+ +A GY V + SG+ T
Sbjct: 332 AGKDSAFDYQVPSVVYTSPEWAG-------VGLTEEEAKRAGYKVKVGKFPLAASGRALT 384
Query: 69 MMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAF 121
+ G++ D D + P + + ++ + ++G + D A
Sbjct: 385 LGGAEGMVKVVGDEETDLLL--GVFIVGPQAGELIAEAALALEMGATLTDLAL 435
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii
Mycobacterium Smegmatis
Length = 489
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 138 KTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVT-LGSVI----------SS 186
++FT++ + +R F E C+ +V +RL+E A + S+VT L S I +
Sbjct: 390 ESFTLLSNVSRLFAE--RCIDGLVANEERLRELAESSPSIVTPLNSAIGYEEAAKVAKQA 447
Query: 187 LAELSTKKSTFI 198
LAE T + T I
Sbjct: 448 LAEKKTIRQTVI 459
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,673,306
Number of Sequences: 62578
Number of extensions: 359394
Number of successful extensions: 1141
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 171
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)