Query psy37
Match_columns 279
No_of_seqs 136 out of 1249
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 23:19:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy37.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/37hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0245|consensus 100.0 2E-65 4.3E-70 475.3 11.9 262 3-278 39-378 (1221)
2 KOG4280|consensus 100.0 9.8E-64 2.1E-68 452.2 11.9 241 20-278 54-366 (574)
3 KOG0243|consensus 100.0 1.7E-60 3.7E-65 449.0 14.2 238 20-278 97-421 (1041)
4 PLN03188 kinesin-12 family pro 100.0 2.5E-57 5.5E-62 431.9 17.4 255 12-277 126-469 (1320)
5 KOG0242|consensus 100.0 3.9E-57 8.4E-62 424.0 14.2 243 18-278 53-362 (675)
6 KOG0241|consensus 100.0 1.2E-55 2.6E-60 405.6 14.9 258 8-279 50-382 (1714)
7 cd01373 KISc_KLP2_like Kinesin 100.0 1.9E-55 4.2E-60 388.2 13.9 220 18-248 41-337 (337)
8 cd01370 KISc_KIP3_like Kinesin 100.0 2.3E-54 4.9E-59 381.6 13.9 216 17-248 53-338 (338)
9 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.3E-53 2.7E-58 379.8 16.6 233 9-255 46-356 (356)
10 KOG0240|consensus 100.0 3E-54 6.4E-59 381.7 11.7 224 18-259 49-342 (607)
11 cd01368 KISc_KIF23_like Kinesi 100.0 1.6E-53 3.5E-58 376.9 13.6 210 16-246 53-345 (345)
12 cd01364 KISc_BimC_Eg5 Kinesin 100.0 4.8E-53 1E-57 375.9 15.4 220 17-257 47-352 (352)
13 cd01376 KISc_KID_like Kinesin 100.0 6.9E-52 1.5E-56 363.5 13.5 208 18-246 47-319 (319)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 1.9E-51 4.1E-56 362.8 15.2 212 18-248 48-333 (333)
15 cd01367 KISc_KIF2_like Kinesin 100.0 1.3E-51 2.8E-56 362.0 13.1 209 17-246 50-322 (322)
16 cd01375 KISc_KIF9_like Kinesin 100.0 2.4E-50 5.2E-55 355.6 14.4 208 19-246 49-334 (334)
17 cd01372 KISc_KIF4 Kinesin moto 100.0 2.4E-50 5.2E-55 357.5 13.8 217 17-249 39-341 (341)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 2.5E-50 5.3E-55 354.3 13.7 213 17-248 39-321 (321)
19 cd01369 KISc_KHC_KIF5 Kinesin 100.0 2.2E-50 4.7E-55 355.4 13.2 214 17-248 42-325 (325)
20 cd01366 KISc_C_terminal Kinesi 100.0 3.6E-49 7.9E-54 348.3 13.8 215 18-251 45-329 (329)
21 KOG0239|consensus 100.0 8E-50 1.7E-54 373.4 9.9 237 19-276 361-667 (670)
22 smart00129 KISc Kinesin motor, 100.0 1.6E-48 3.5E-53 345.3 14.2 221 18-255 46-335 (335)
23 PF00225 Kinesin: Kinesin moto 100.0 4E-49 8.6E-54 349.4 8.3 216 18-248 41-335 (335)
24 KOG0244|consensus 100.0 1.2E-46 2.6E-51 350.4 14.0 256 5-278 19-347 (913)
25 KOG0246|consensus 100.0 1E-46 2.2E-51 333.2 11.8 219 16-252 256-545 (676)
26 cd00106 KISc Kinesin motor dom 100.0 2.2E-46 4.8E-51 330.9 13.7 213 18-246 45-328 (328)
27 KOG0247|consensus 100.0 3.3E-45 7.2E-50 332.1 9.3 236 19-255 82-443 (809)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.7E-43 3.6E-48 329.2 14.6 222 17-256 55-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 2.1E-36 4.5E-41 245.9 11.5 179 35-227 8-186 (186)
30 KOG0245|consensus 97.9 1.9E-05 4E-10 76.5 6.4 79 63-146 31-109 (1221)
31 PF00308 Bac_DnaA: Bacterial d 95.8 0.005 1.1E-07 51.3 1.8 49 20-71 5-53 (219)
32 KOG4280|consensus 95.6 0.018 3.8E-07 54.1 4.7 44 102-145 63-106 (574)
33 PRK06893 DNA replication initi 95.3 0.014 3.1E-07 48.9 3.1 46 20-71 13-58 (229)
34 COG2805 PilT Tfp pilus assembl 95.3 0.0056 1.2E-07 52.6 0.5 32 40-71 113-144 (353)
35 KOG0241|consensus 95.1 0.038 8.2E-07 54.1 5.4 65 84-148 53-117 (1714)
36 PRK06620 hypothetical protein; 95.0 0.017 3.6E-07 48.0 2.4 48 20-71 13-63 (214)
37 PRK12377 putative replication 94.6 0.036 7.8E-07 47.0 3.5 49 21-71 72-120 (248)
38 PRK09087 hypothetical protein; 94.4 0.027 5.9E-07 47.1 2.4 46 20-71 18-63 (226)
39 PRK08084 DNA replication initi 94.2 0.027 5.9E-07 47.4 1.8 46 20-71 19-64 (235)
40 COG2804 PulE Type II secretory 94.1 0.021 4.4E-07 52.6 1.1 30 42-71 248-277 (500)
41 PRK05642 DNA replication initi 94.0 0.041 9E-07 46.3 2.7 45 20-71 16-64 (234)
42 PRK14086 dnaA chromosomal repl 94.0 0.027 5.8E-07 53.6 1.7 56 12-71 278-333 (617)
43 PRK08116 hypothetical protein; 94.0 0.04 8.7E-07 47.4 2.6 50 20-71 82-133 (268)
44 PRK06526 transposase; Provisio 93.7 0.025 5.3E-07 48.3 0.8 46 21-71 72-117 (254)
45 TIGR02928 orc1/cdc6 family rep 93.7 0.061 1.3E-06 48.2 3.3 48 22-70 10-58 (365)
46 PRK14088 dnaA chromosomal repl 93.5 0.045 9.9E-07 50.5 2.3 48 20-71 102-149 (440)
47 PRK07952 DNA replication prote 93.5 0.081 1.8E-06 44.8 3.5 49 21-71 70-118 (244)
48 PF13245 AAA_19: Part of AAA d 93.4 0.025 5.5E-07 38.6 0.3 27 44-71 3-29 (76)
49 PRK08181 transposase; Validate 93.0 0.1 2.2E-06 44.9 3.4 49 18-71 76-125 (269)
50 PRK08903 DnaA regulatory inact 92.9 0.095 2.1E-06 43.7 3.0 47 20-71 15-61 (227)
51 PRK06835 DNA replication prote 92.7 0.13 2.8E-06 45.5 3.8 37 33-71 166-202 (329)
52 PRK08727 hypothetical protein; 92.5 0.091 2E-06 44.1 2.4 19 53-71 42-60 (233)
53 cd01365 KISc_KIF1A_KIF1B Kines 92.4 0.47 1E-05 42.5 7.0 62 86-147 50-111 (356)
54 TIGR03420 DnaA_homol_Hda DnaA 92.4 0.12 2.7E-06 42.7 3.1 46 20-71 12-57 (226)
55 PF04851 ResIII: Type III rest 92.3 0.063 1.4E-06 42.5 1.2 21 51-71 24-44 (184)
56 PRK08939 primosomal protein Dn 92.3 0.067 1.4E-06 46.9 1.4 41 30-71 134-175 (306)
57 PRK00411 cdc6 cell division co 92.2 0.14 3.1E-06 46.4 3.5 38 32-70 35-73 (394)
58 TIGR00362 DnaA chromosomal rep 92.1 0.098 2.1E-06 47.8 2.4 49 20-71 107-155 (405)
59 PRK00149 dnaA chromosomal repl 92.0 0.094 2E-06 48.6 2.1 49 20-71 119-167 (450)
60 COG0556 UvrB Helicase subunit 91.9 0.14 3.1E-06 47.4 3.1 47 20-71 5-51 (663)
61 cd00009 AAA The AAA+ (ATPases 91.8 0.095 2.1E-06 39.5 1.7 24 46-69 13-36 (151)
62 COG5008 PilU Tfp pilus assembl 91.8 0.097 2.1E-06 44.5 1.8 36 36-71 110-146 (375)
63 COG1474 CDC6 Cdc6-related prot 91.6 0.12 2.7E-06 46.4 2.3 26 44-69 33-59 (366)
64 PRK10436 hypothetical protein; 91.6 0.061 1.3E-06 49.8 0.4 30 42-71 208-237 (462)
65 COG1484 DnaC DNA replication p 91.4 0.19 4E-06 42.9 3.1 41 28-71 84-124 (254)
66 TIGR02538 type_IV_pilB type IV 91.2 0.073 1.6E-06 50.8 0.5 29 43-71 307-335 (564)
67 COG0593 DnaA ATPase involved i 91.1 0.12 2.6E-06 46.9 1.7 49 20-71 84-132 (408)
68 PRK14087 dnaA chromosomal repl 90.9 0.15 3.2E-06 47.3 2.2 49 20-71 112-160 (450)
69 TIGR02533 type_II_gspE general 90.8 0.095 2.1E-06 49.0 0.8 30 42-71 232-261 (486)
70 PF13604 AAA_30: AAA domain; P 90.5 0.088 1.9E-06 43.0 0.3 29 42-70 8-36 (196)
71 TIGR01420 pilT_fam pilus retra 90.1 0.11 2.4E-06 46.3 0.6 30 42-71 112-141 (343)
72 PF01695 IstB_IS21: IstB-like 90.0 0.19 4.1E-06 40.4 1.9 20 52-71 47-66 (178)
73 TIGR02525 plasmid_TraJ plasmid 90.0 0.12 2.6E-06 46.5 0.8 28 43-71 141-168 (372)
74 cd01131 PilT Pilus retraction 89.7 0.091 2E-06 43.0 -0.2 20 52-71 1-20 (198)
75 cd00046 DEXDc DEAD-like helica 89.7 0.086 1.9E-06 39.3 -0.4 17 55-71 3-19 (144)
76 cd01370 KISc_KIP3_like Kinesin 89.7 0.51 1.1E-05 42.0 4.5 48 99-146 62-109 (338)
77 cd01376 KISc_KID_like Kinesin 89.5 0.86 1.9E-05 40.2 5.7 44 103-146 59-102 (319)
78 cd01129 PulE-GspE PulE/GspE Th 89.2 0.16 3.4E-06 43.6 0.9 30 42-71 70-99 (264)
79 cd01373 KISc_KLP2_like Kinesin 89.1 0.5 1.1E-05 42.1 4.0 46 102-147 52-97 (337)
80 KOG0989|consensus 89.1 0.23 4.9E-06 43.1 1.7 38 33-70 37-75 (346)
81 KOG0243|consensus 89.1 0.75 1.6E-05 46.1 5.4 48 103-150 107-154 (1041)
82 PF00437 T2SE: Type II/IV secr 89.1 0.13 2.8E-06 44.2 0.2 29 42-70 114-145 (270)
83 TIGR02524 dot_icm_DotB Dot/Icm 89.0 0.15 3.3E-06 45.7 0.7 27 45-71 127-153 (358)
84 PF01935 DUF87: Domain of unkn 89.0 0.11 2.4E-06 43.3 -0.2 18 52-69 23-40 (229)
85 PRK09183 transposase/IS protei 88.9 0.23 5E-06 42.4 1.7 45 22-71 77-121 (259)
86 PF13401 AAA_22: AAA domain; P 88.9 0.087 1.9E-06 39.5 -0.9 18 52-69 4-21 (131)
87 smart00382 AAA ATPases associa 88.5 0.12 2.6E-06 38.5 -0.3 19 53-71 3-21 (148)
88 PF05970 PIF1: PIF1-like helic 88.5 0.24 5.3E-06 44.5 1.7 37 29-69 3-39 (364)
89 PRK06921 hypothetical protein; 88.5 0.46 1E-05 40.8 3.3 31 41-71 103-136 (266)
90 COG4962 CpaF Flp pilus assembl 88.3 0.19 4.2E-06 44.2 0.8 29 42-71 164-192 (355)
91 PRK12422 chromosomal replicati 88.1 0.32 7E-06 45.0 2.2 49 20-71 108-160 (445)
92 PF01637 Arch_ATPase: Archaeal 87.9 0.17 3.7E-06 41.7 0.3 29 42-70 10-38 (234)
93 PF12846 AAA_10: AAA-like doma 87.8 0.14 3.1E-06 44.1 -0.3 19 52-70 1-19 (304)
94 PF00270 DEAD: DEAD/DEAH box h 87.6 0.35 7.5E-06 37.8 1.9 28 42-71 6-33 (169)
95 PF13191 AAA_16: AAA ATPase do 87.5 0.17 3.7E-06 40.2 0.0 22 48-69 20-41 (185)
96 PRK13894 conjugal transfer ATP 87.2 0.27 5.9E-06 43.3 1.1 28 42-70 139-166 (319)
97 PF13086 AAA_11: AAA domain; P 87.0 0.28 6.1E-06 40.4 1.1 29 42-71 8-36 (236)
98 PHA00729 NTP-binding motif con 86.8 0.47 1E-05 39.6 2.2 32 40-71 5-36 (226)
99 PF00448 SRP54: SRP54-type pro 86.6 0.16 3.6E-06 41.4 -0.5 16 54-69 3-18 (196)
100 KOG0242|consensus 86.3 0.83 1.8E-05 44.4 3.9 52 96-147 58-109 (675)
101 PRK12402 replication factor C 86.2 0.4 8.8E-06 42.3 1.7 22 49-70 33-54 (337)
102 TIGR03015 pepcterm_ATPase puta 86.2 0.36 7.9E-06 41.1 1.3 46 25-70 12-61 (269)
103 cd01367 KISc_KIF2_like Kinesin 86.0 0.92 2E-05 40.1 3.8 47 100-146 60-106 (322)
104 cd01368 KISc_KIF23_like Kinesi 86.0 1.1 2.4E-05 40.0 4.3 48 99-146 63-110 (345)
105 PF00004 AAA: ATPase family as 85.6 0.29 6.3E-06 36.4 0.4 15 55-69 1-15 (132)
106 PLN03188 kinesin-12 family pro 85.5 0.88 1.9E-05 46.5 3.7 48 99-146 140-187 (1320)
107 PF13479 AAA_24: AAA domain 85.4 0.28 6E-06 40.6 0.2 20 52-71 3-22 (213)
108 TIGR02782 TrbB_P P-type conjug 85.4 0.29 6.2E-06 42.8 0.3 30 41-71 122-151 (299)
109 TIGR03499 FlhF flagellar biosy 85.3 0.82 1.8E-05 39.6 3.1 19 53-71 195-213 (282)
110 PRK12723 flagellar biosynthesi 85.3 0.73 1.6E-05 41.8 2.8 19 52-70 174-192 (388)
111 PF13207 AAA_17: AAA domain; P 84.8 0.33 7.1E-06 35.8 0.4 16 54-69 1-16 (121)
112 PTZ00112 origin recognition co 84.8 0.57 1.2E-05 46.7 2.0 22 49-70 778-799 (1164)
113 PF02562 PhoH: PhoH-like prote 84.7 0.5 1.1E-05 38.8 1.4 20 51-70 18-37 (205)
114 PF13671 AAA_33: AAA domain; P 84.7 0.31 6.7E-06 37.1 0.1 15 55-69 2-16 (143)
115 cd01364 KISc_BimC_Eg5 Kinesin 84.4 1.6 3.5E-05 39.0 4.7 48 101-148 58-105 (352)
116 PF00580 UvrD-helicase: UvrD/R 84.2 0.26 5.6E-06 42.8 -0.5 21 51-71 12-32 (315)
117 COG1223 Predicted ATPase (AAA+ 84.2 0.31 6.8E-06 41.4 -0.0 20 50-69 149-168 (368)
118 cd01130 VirB11-like_ATPase Typ 84.1 0.44 9.6E-06 38.4 0.9 29 41-70 15-43 (186)
119 cd01375 KISc_KIF9_like Kinesin 84.1 1.4 3E-05 39.1 4.1 51 96-147 53-103 (334)
120 PRK13833 conjugal transfer pro 84.0 0.42 9.2E-06 42.2 0.7 29 42-71 135-163 (323)
121 KOG0239|consensus 83.9 1.1 2.3E-05 43.6 3.4 50 95-145 364-413 (670)
122 PRK06547 hypothetical protein; 83.6 0.87 1.9E-05 36.3 2.3 27 43-69 6-32 (172)
123 PF07724 AAA_2: AAA domain (Cd 83.4 0.39 8.4E-06 38.3 0.2 17 53-69 4-20 (171)
124 PRK03992 proteasome-activating 83.1 0.38 8.1E-06 43.7 0.1 51 20-70 128-183 (389)
125 PRK13900 type IV secretion sys 83.0 0.53 1.1E-05 41.8 0.9 30 41-71 150-179 (332)
126 PF00063 Myosin_head: Myosin h 83.0 0.65 1.4E-05 45.5 1.7 22 48-69 81-102 (689)
127 cd01371 KISc_KIF3 Kinesin moto 82.9 1.8 4E-05 38.4 4.3 47 101-147 58-104 (333)
128 PF12775 AAA_7: P-loop contain 82.4 0.78 1.7E-05 39.5 1.7 28 43-71 25-52 (272)
129 smart00242 MYSc Myosin. Large 82.4 0.89 1.9E-05 44.4 2.3 37 33-69 73-109 (677)
130 TIGR01242 26Sp45 26S proteasom 82.2 0.25 5.4E-06 44.5 -1.5 20 52-71 156-175 (364)
131 smart00487 DEXDc DEAD-like hel 82.1 0.62 1.3E-05 36.9 0.9 27 44-71 17-43 (201)
132 COG1219 ClpX ATP-dependent pro 82.0 0.52 1.1E-05 41.2 0.5 19 49-67 94-112 (408)
133 COG2256 MGS1 ATPase related to 81.8 0.61 1.3E-05 42.0 0.9 37 31-68 28-64 (436)
134 PHA02544 44 clamp loader, smal 81.7 0.68 1.5E-05 40.6 1.2 23 49-71 39-62 (316)
135 PF05496 RuvB_N: Holliday junc 81.6 2.2 4.7E-05 35.6 4.0 41 27-68 24-66 (233)
136 PLN03025 replication factor C 81.5 0.7 1.5E-05 40.7 1.2 23 49-71 31-53 (319)
137 cd01384 MYSc_type_XI Myosin mo 81.4 1.1 2.3E-05 43.8 2.4 21 49-69 85-105 (674)
138 KOG1803|consensus 81.4 1.5 3.3E-05 41.4 3.3 28 42-70 192-219 (649)
139 cd01372 KISc_KIF4 Kinesin moto 81.4 2.2 4.7E-05 38.0 4.2 46 101-146 50-95 (341)
140 PF06309 Torsin: Torsin; Inte 81.2 1.3 2.8E-05 33.4 2.3 27 42-68 39-69 (127)
141 cd01383 MYSc_type_VIII Myosin 81.1 1.2 2.7E-05 43.4 2.8 21 49-69 89-109 (677)
142 cd01381 MYSc_type_VII Myosin m 81.1 1.3 2.8E-05 43.3 2.8 21 49-69 83-103 (671)
143 cd01385 MYSc_type_IX Myosin mo 80.7 1.2 2.5E-05 43.7 2.4 21 49-69 91-111 (692)
144 COG1419 FlhF Flagellar GTP-bin 80.6 1.1 2.3E-05 40.6 2.0 38 32-69 179-220 (407)
145 PF01580 FtsK_SpoIIIE: FtsK/Sp 80.5 0.39 8.5E-06 39.2 -0.8 18 53-70 39-56 (205)
146 PRK13851 type IV secretion sys 80.5 0.45 9.7E-06 42.4 -0.4 29 42-71 153-181 (344)
147 PRK14722 flhF flagellar biosyn 80.2 0.52 1.1E-05 42.5 -0.1 20 52-71 137-156 (374)
148 cd00124 MYSc Myosin motor doma 80.1 1.2 2.5E-05 43.7 2.2 21 49-69 83-103 (679)
149 TIGR00635 ruvB Holliday juncti 80.1 1.1 2.4E-05 39.0 1.9 40 30-70 7-48 (305)
150 cd01377 MYSc_type_II Myosin mo 80.1 1.1 2.5E-05 43.8 2.2 22 48-69 87-108 (693)
151 cd01387 MYSc_type_XV Myosin mo 80.1 1.4 3.1E-05 42.9 2.8 21 49-69 84-104 (677)
152 cd01378 MYSc_type_I Myosin mot 80.1 1.3 2.9E-05 43.2 2.6 21 49-69 83-103 (674)
153 PLN00020 ribulose bisphosphate 80.0 1.7 3.6E-05 39.2 2.9 51 19-69 111-165 (413)
154 KOG2543|consensus 79.8 0.58 1.3E-05 41.9 0.0 20 51-70 29-48 (438)
155 cd01382 MYSc_type_VI Myosin mo 79.5 1.3 2.8E-05 43.6 2.3 22 48-69 87-108 (717)
156 KOG0240|consensus 79.5 2.5 5.5E-05 39.6 4.0 52 96-147 54-105 (607)
157 cd01369 KISc_KHC_KIF5 Kinesin 79.0 2.6 5.6E-05 37.2 3.9 46 102-147 54-99 (325)
158 PTZ00454 26S protease regulato 79.0 0.66 1.4E-05 42.3 0.1 51 20-70 142-197 (398)
159 cd01380 MYSc_type_V Myosin mot 78.9 1.4 3E-05 43.2 2.3 21 49-69 83-103 (691)
160 TIGR02237 recomb_radB DNA repa 78.8 1 2.3E-05 36.8 1.3 25 45-69 2-29 (209)
161 cd01374 KISc_CENP_E Kinesin mo 78.8 2.4 5.1E-05 37.4 3.6 45 102-146 51-95 (321)
162 PF00735 Septin: Septin; Inte 78.7 0.73 1.6E-05 39.9 0.3 20 49-68 1-20 (281)
163 PF00910 RNA_helicase: RNA hel 78.6 0.66 1.4E-05 33.7 0.0 15 55-69 1-15 (107)
164 PRK11776 ATP-dependent RNA hel 78.6 1.3 2.9E-05 41.0 2.1 24 43-68 34-57 (460)
165 TIGR02881 spore_V_K stage V sp 78.5 0.75 1.6E-05 39.2 0.3 20 51-70 41-60 (261)
166 COG1125 OpuBA ABC-type proline 78.5 0.6 1.3E-05 39.6 -0.2 14 56-69 31-44 (309)
167 PRK13764 ATPase; Provisional 78.3 0.77 1.7E-05 44.0 0.4 20 52-71 257-276 (602)
168 PRK14974 cell division protein 77.8 2.3 5E-05 37.8 3.2 19 52-70 140-158 (336)
169 PRK10416 signal recognition pa 77.7 1.5 3.2E-05 38.7 2.0 19 52-70 114-132 (318)
170 cd01123 Rad51_DMC1_radA Rad51_ 77.6 1.6 3.4E-05 36.4 2.0 29 41-69 5-36 (235)
171 PRK10536 hypothetical protein; 77.5 1.2 2.7E-05 37.9 1.3 18 53-70 75-92 (262)
172 PHA01747 putative ATP-dependen 77.4 1.5 3.2E-05 39.3 1.8 29 41-69 179-207 (425)
173 PTZ00424 helicase 45; Provisio 77.2 1.5 3.3E-05 39.7 1.9 26 42-69 57-82 (401)
174 PRK04328 hypothetical protein; 77.1 1.6 3.5E-05 37.0 2.0 27 41-67 9-38 (249)
175 cd00268 DEADc DEAD-box helicas 76.9 1.8 3.8E-05 35.1 2.1 24 43-68 29-52 (203)
176 COG5019 CDC3 Septin family pro 76.9 1.4 3E-05 39.2 1.5 24 49-72 20-46 (373)
177 PF07728 AAA_5: AAA domain (dy 76.7 1 2.2E-05 34.1 0.6 15 55-69 2-16 (139)
178 PF13238 AAA_18: AAA domain; P 76.6 1 2.2E-05 33.3 0.6 15 55-69 1-15 (129)
179 TIGR00348 hsdR type I site-spe 76.6 1.4 3.1E-05 43.0 1.7 31 40-71 247-282 (667)
180 PF02456 Adeno_IVa2: Adenoviru 76.2 0.71 1.5E-05 40.2 -0.4 17 53-69 88-104 (369)
181 PRK00440 rfc replication facto 76.1 1.5 3.3E-05 38.2 1.6 21 49-69 35-55 (319)
182 PRK00771 signal recognition pa 76.0 3.2 6.8E-05 38.4 3.7 20 51-70 94-113 (437)
183 PF06414 Zeta_toxin: Zeta toxi 75.8 0.82 1.8E-05 37.2 -0.1 21 50-70 13-33 (199)
184 cd01363 Motor_domain Myosin an 75.7 3 6.6E-05 33.5 3.2 38 108-146 8-45 (186)
185 PRK11192 ATP-dependent RNA hel 75.7 1.8 3.8E-05 39.9 2.0 25 42-68 30-54 (434)
186 PRK06067 flagellar accessory p 75.6 1.8 3.8E-05 36.2 1.8 29 41-69 11-42 (234)
187 smart00129 KISc Kinesin motor, 75.5 7.8 0.00017 34.3 6.0 43 103-145 58-100 (335)
188 cd01386 MYSc_type_XVIII Myosin 74.9 2 4.3E-05 42.6 2.2 21 49-69 83-103 (767)
189 PF05673 DUF815: Protein of un 74.7 1.7 3.7E-05 36.7 1.5 29 43-71 42-71 (249)
190 PF06048 DUF927: Domain of unk 74.6 2.1 4.5E-05 37.1 2.0 32 37-69 179-210 (286)
191 PRK09361 radB DNA repair and r 74.5 2.4 5.1E-05 35.1 2.3 30 40-69 8-40 (225)
192 TIGR00376 DNA helicase, putati 74.3 1.5 3.2E-05 42.7 1.1 28 43-71 165-192 (637)
193 PF03215 Rad17: Rad17 cell cyc 74.1 1.7 3.6E-05 41.1 1.4 29 41-69 32-62 (519)
194 TIGR01241 FtsH_fam ATP-depende 74.1 1.4 2.9E-05 41.5 0.8 18 53-70 89-106 (495)
195 PRK10590 ATP-dependent RNA hel 74.1 2.2 4.8E-05 39.6 2.2 25 42-68 30-54 (456)
196 COG1222 RPT1 ATP-dependent 26S 74.0 1.3 2.9E-05 39.3 0.7 42 27-68 155-201 (406)
197 TIGR02788 VirB11 P-type DNA tr 74.0 1.8 3.9E-05 38.0 1.5 30 40-70 133-162 (308)
198 PRK04837 ATP-dependent RNA hel 73.9 2.2 4.8E-05 39.1 2.2 25 43-69 38-62 (423)
199 PRK11448 hsdR type I restricti 73.8 1.4 3.1E-05 45.5 0.9 28 43-71 425-452 (1123)
200 PHA02624 large T antigen; Prov 73.8 2.4 5.2E-05 40.6 2.3 28 42-69 419-448 (647)
201 PRK13342 recombination factor 73.7 1.7 3.6E-05 39.9 1.3 39 31-70 16-54 (413)
202 PF13173 AAA_14: AAA domain 73.6 0.96 2.1E-05 33.9 -0.3 17 53-69 3-19 (128)
203 COG4525 TauB ABC-type taurine 73.3 1.8 3.8E-05 35.5 1.1 16 54-69 33-48 (259)
204 PTZ00361 26 proteosome regulat 73.3 1.1 2.3E-05 41.4 -0.1 17 54-70 219-235 (438)
205 KOG1547|consensus 73.2 4.2 9E-05 34.3 3.3 21 49-69 43-63 (336)
206 smart00763 AAA_PrkA PrkA AAA d 73.2 4.5 9.8E-05 36.2 3.8 39 24-67 52-93 (361)
207 PF10236 DAP3: Mitochondrial r 72.9 2 4.4E-05 37.7 1.6 24 48-71 19-42 (309)
208 cd01126 TraG_VirD4 The TraG/Tr 72.8 1.9 4.2E-05 39.0 1.5 16 55-70 2-17 (384)
209 PHA02653 RNA helicase NPH-II; 72.3 3.1 6.7E-05 40.7 2.8 33 30-68 163-195 (675)
210 PRK04195 replication factor C 72.2 2.3 4.9E-05 39.9 1.8 29 42-70 28-57 (482)
211 TIGR01359 UMP_CMP_kin_fam UMP- 72.1 1.4 3.1E-05 35.0 0.4 15 55-69 2-16 (183)
212 PRK13341 recombination factor 71.9 1.7 3.7E-05 42.8 0.9 22 49-70 49-70 (725)
213 TIGR00614 recQ_fam ATP-depende 71.9 2.3 5E-05 39.7 1.8 26 42-69 18-43 (470)
214 PRK11331 5-methylcytosine-spec 71.7 3.1 6.8E-05 38.4 2.5 25 43-69 187-211 (459)
215 PRK05703 flhF flagellar biosyn 71.5 1.2 2.6E-05 40.9 -0.2 19 53-71 222-240 (424)
216 PF13555 AAA_29: P-loop contai 71.5 2 4.4E-05 28.0 0.9 16 54-69 25-40 (62)
217 cd01379 MYSc_type_III Myosin m 71.3 3 6.4E-05 40.6 2.4 21 49-69 83-103 (653)
218 PRK05580 primosome assembly pr 71.2 2.5 5.5E-05 41.4 1.9 38 25-69 142-179 (679)
219 cd00820 PEPCK_HprK Phosphoenol 71.0 1.3 2.7E-05 32.4 -0.1 17 53-69 16-32 (107)
220 KOG0926|consensus 70.9 2.2 4.7E-05 41.9 1.4 18 52-69 271-288 (1172)
221 PHA02244 ATPase-like protein 70.8 4.1 8.8E-05 36.7 3.0 27 42-70 111-137 (383)
222 PRK11889 flhF flagellar biosyn 70.8 3.5 7.6E-05 37.6 2.6 18 53-70 242-259 (436)
223 COG1201 Lhr Lhr-like helicases 70.8 3.2 6.9E-05 41.2 2.5 26 43-70 30-55 (814)
224 cd02021 GntK Gluconate kinase 70.8 1.5 3.3E-05 33.6 0.3 15 55-69 2-16 (150)
225 TIGR01618 phage_P_loop phage n 70.7 1.7 3.7E-05 36.1 0.6 20 52-71 12-31 (220)
226 cd01394 radB RadB. The archaea 70.6 3.2 7E-05 34.1 2.2 28 42-69 6-36 (218)
227 cd01120 RecA-like_NTPases RecA 70.5 1.6 3.5E-05 33.4 0.4 16 55-70 2-17 (165)
228 PRK00131 aroK shikimate kinase 70.4 1.8 3.8E-05 34.0 0.6 17 53-69 5-21 (175)
229 TIGR03819 heli_sec_ATPase heli 70.4 2 4.2E-05 38.4 0.9 30 40-70 167-196 (340)
230 COG5059 KIP1 Kinesin-like prot 70.3 12 0.00025 36.0 6.1 51 96-146 61-111 (568)
231 PRK07261 topology modulation p 70.1 1.9 4.2E-05 34.2 0.8 15 55-69 3-17 (171)
232 cd00106 KISc Kinesin motor dom 70.0 6.2 0.00013 34.8 4.0 44 103-146 57-100 (328)
233 CHL00081 chlI Mg-protoporyphyr 70.0 2.5 5.5E-05 37.7 1.5 45 19-71 13-57 (350)
234 COG3829 RocR Transcriptional r 69.7 3.3 7.1E-05 38.9 2.2 42 19-66 241-282 (560)
235 TIGR01313 therm_gnt_kin carboh 69.7 1.5 3.2E-05 34.3 -0.0 14 55-68 1-14 (163)
236 CHL00181 cbbX CbbX; Provisiona 69.6 1.7 3.7E-05 37.7 0.3 16 54-69 61-76 (287)
237 TIGR02903 spore_lon_C ATP-depe 69.5 3.1 6.6E-05 40.3 2.1 41 21-69 152-192 (615)
238 PRK08118 topology modulation p 69.4 2.1 4.5E-05 33.9 0.8 14 55-68 4-17 (167)
239 PTZ00014 myosin-A; Provisional 69.2 3.4 7.4E-05 41.3 2.4 21 49-69 180-200 (821)
240 PRK14723 flhF flagellar biosyn 69.1 4.4 9.5E-05 40.0 3.0 18 53-70 186-203 (767)
241 PRK00080 ruvB Holliday junctio 69.1 3.1 6.7E-05 36.8 1.9 39 31-70 29-69 (328)
242 PRK06696 uridine kinase; Valid 69.0 5.7 0.00012 32.9 3.4 21 49-69 19-39 (223)
243 TIGR01243 CDC48 AAA family ATP 69.0 2.6 5.6E-05 41.7 1.5 17 53-69 213-229 (733)
244 PF05729 NACHT: NACHT domain 68.9 1.5 3.3E-05 33.8 -0.1 17 54-70 2-18 (166)
245 KOG0745|consensus 68.9 2 4.3E-05 39.3 0.6 16 52-67 226-241 (564)
246 cd01393 recA_like RecA is a b 68.8 3.9 8.4E-05 33.8 2.3 30 41-70 5-37 (226)
247 PRK11634 ATP-dependent RNA hel 68.6 3.2 6.9E-05 40.3 2.0 25 43-69 36-60 (629)
248 PF08477 Miro: Miro-like prote 68.6 2.2 4.9E-05 31.0 0.8 15 55-69 2-16 (119)
249 cd01850 CDC_Septin CDC/Septin. 68.4 2.7 5.8E-05 36.3 1.3 21 49-69 1-21 (276)
250 PRK11057 ATP-dependent DNA hel 68.2 3 6.6E-05 40.3 1.8 25 42-68 32-56 (607)
251 KOG0953|consensus 68.0 2.2 4.8E-05 40.1 0.7 16 54-69 193-208 (700)
252 PRK06995 flhF flagellar biosyn 67.9 1.6 3.4E-05 40.8 -0.2 18 53-70 257-274 (484)
253 COG3842 PotA ABC-type spermidi 67.8 1.5 3.2E-05 39.2 -0.4 15 55-69 34-48 (352)
254 cd01428 ADK Adenylate kinase ( 67.5 2.1 4.4E-05 34.4 0.4 15 55-69 2-16 (194)
255 TIGR02236 recomb_radA DNA repa 67.4 4.1 8.8E-05 35.7 2.3 30 40-69 80-112 (310)
256 cd00464 SK Shikimate kinase (S 67.3 2 4.3E-05 33.0 0.3 16 54-69 1-16 (154)
257 COG1126 GlnQ ABC-type polar am 67.3 2.9 6.3E-05 34.7 1.2 23 47-69 17-45 (240)
258 PRK14962 DNA polymerase III su 66.9 4.7 0.0001 37.7 2.6 23 47-69 30-53 (472)
259 PRK06217 hypothetical protein; 66.8 2.1 4.6E-05 34.3 0.3 15 55-69 4-18 (183)
260 COG3839 MalK ABC-type sugar tr 66.8 1.6 3.4E-05 38.8 -0.4 16 54-69 31-46 (338)
261 PRK09270 nucleoside triphospha 66.8 6.1 0.00013 32.9 3.1 39 31-69 11-50 (229)
262 TIGR02880 cbbX_cfxQ probable R 66.6 2.1 4.5E-05 37.1 0.3 16 54-69 60-75 (284)
263 PRK14961 DNA polymerase III su 66.4 3.6 7.7E-05 37.0 1.8 35 31-69 20-55 (363)
264 CHL00176 ftsH cell division pr 66.4 2.9 6.3E-05 40.6 1.2 18 53-70 217-234 (638)
265 COG0606 Predicted ATPase with 66.3 2.4 5.2E-05 39.2 0.6 26 54-82 200-225 (490)
266 TIGR01389 recQ ATP-dependent D 66.2 3.5 7.5E-05 39.7 1.7 26 42-69 20-45 (591)
267 TIGR02322 phosphon_PhnN phosph 66.2 1.7 3.8E-05 34.5 -0.3 17 54-70 3-19 (179)
268 PRK11034 clpA ATP-dependent Cl 66.1 5.2 0.00011 39.7 2.9 38 31-69 462-505 (758)
269 PRK10865 protein disaggregatio 66.0 4 8.6E-05 41.2 2.1 17 53-69 599-615 (857)
270 KOG0729|consensus 65.9 2.9 6.4E-05 35.8 1.0 20 49-68 206-227 (435)
271 TIGR03689 pup_AAA proteasome A 65.9 2 4.4E-05 40.4 0.1 17 53-69 217-233 (512)
272 TIGR02640 gas_vesic_GvpN gas v 65.9 5.2 0.00011 34.1 2.6 25 43-69 14-38 (262)
273 COG4096 HsdR Type I site-speci 65.9 6.2 0.00013 38.9 3.3 37 34-71 167-204 (875)
274 PRK01297 ATP-dependent RNA hel 65.7 4.1 8.9E-05 38.0 2.1 27 41-69 115-141 (475)
275 KOG0652|consensus 65.7 2.7 5.8E-05 35.9 0.8 14 54-67 207-220 (424)
276 PLN00206 DEAD-box ATP-dependen 65.7 4.7 0.0001 38.1 2.5 25 42-68 150-174 (518)
277 cd01124 KaiC KaiC is a circadi 65.6 2.6 5.6E-05 33.5 0.6 15 55-69 2-16 (187)
278 PRK12724 flagellar biosynthesi 65.5 5.3 0.00012 36.6 2.7 18 52-69 223-240 (432)
279 TIGR01817 nifA Nif-specific re 65.1 2.9 6.3E-05 39.7 0.9 44 20-69 193-236 (534)
280 KOG0739|consensus 65.1 2.5 5.4E-05 36.8 0.4 38 32-69 142-183 (439)
281 PF02534 T4SS-DNA_transf: Type 65.0 4.3 9.3E-05 37.7 2.1 21 50-70 42-62 (469)
282 TIGR00064 ftsY signal recognit 65.0 4.1 8.9E-05 35.1 1.8 19 52-70 72-90 (272)
283 TIGR03158 cas3_cyano CRISPR-as 65.0 4.5 9.8E-05 36.2 2.1 27 43-69 5-31 (357)
284 PF13476 AAA_23: AAA domain; P 64.9 2 4.2E-05 34.4 -0.2 18 52-69 19-36 (202)
285 TIGR03877 thermo_KaiC_1 KaiC d 64.8 4.9 0.00011 33.7 2.2 26 42-67 8-36 (237)
286 PF02367 UPF0079: Uncharacteri 64.8 6 0.00013 29.7 2.4 19 53-71 16-34 (123)
287 PRK12726 flagellar biosynthesi 64.5 2 4.4E-05 38.8 -0.2 20 52-71 206-225 (407)
288 cd01127 TrwB Bacterial conjuga 64.4 1.9 4.1E-05 39.5 -0.4 19 51-69 41-59 (410)
289 PRK15424 propionate catabolism 64.4 3.3 7.2E-05 39.3 1.2 44 20-69 216-259 (538)
290 PF00225 Kinesin: Kinesin moto 64.4 2.2 4.8E-05 37.8 0.0 44 102-145 52-95 (335)
291 PRK14729 miaA tRNA delta(2)-is 64.3 3.1 6.8E-05 36.3 0.9 16 54-69 6-21 (300)
292 TIGR02639 ClpA ATP-dependent C 64.3 4.8 0.0001 39.9 2.3 38 31-69 458-501 (731)
293 PRK04537 ATP-dependent RNA hel 64.1 4.9 0.00011 38.5 2.3 25 43-69 39-63 (572)
294 KOG0335|consensus 64.0 1.7 3.7E-05 40.1 -0.8 24 47-72 108-131 (482)
295 PRK14531 adenylate kinase; Pro 63.8 3.1 6.8E-05 33.3 0.8 15 54-68 4-18 (183)
296 PF04508 Pox_A_type_inc: Viral 63.7 9.4 0.0002 19.5 2.2 16 263-278 3-18 (23)
297 PF09439 SRPRB: Signal recogni 63.6 3.3 7.1E-05 33.3 0.9 17 53-69 4-20 (181)
298 TIGR02902 spore_lonB ATP-depen 63.5 5.5 0.00012 37.8 2.5 25 45-69 79-103 (531)
299 TIGR03881 KaiC_arch_4 KaiC dom 63.4 4.3 9.4E-05 33.6 1.6 28 42-69 7-37 (229)
300 TIGR03238 dnd_assoc_3 dnd syst 63.3 2.8 6.1E-05 39.0 0.5 18 53-70 33-50 (504)
301 PRK15455 PrkA family serine pr 63.2 9.8 0.00021 36.5 4.0 41 22-66 75-117 (644)
302 PRK05342 clpX ATP-dependent pr 63.2 6.5 0.00014 36.1 2.8 18 52-69 108-125 (412)
303 COG1136 SalX ABC-type antimicr 63.1 2 4.3E-05 35.9 -0.5 16 54-69 33-48 (226)
304 TIGR02688 conserved hypothetic 63.1 2.7 5.8E-05 38.5 0.3 21 51-71 208-228 (449)
305 CHL00195 ycf46 Ycf46; Provisio 62.9 2.3 4.9E-05 39.9 -0.2 18 53-70 260-277 (489)
306 TIGR03744 traC_PFL_4706 conjug 62.8 2.1 4.5E-05 43.3 -0.5 20 50-69 473-492 (893)
307 PHA02774 E1; Provisional 62.8 4.9 0.00011 38.3 2.0 28 42-69 422-451 (613)
308 PRK10917 ATP-dependent DNA hel 62.7 6.2 0.00014 38.7 2.8 39 27-69 261-299 (681)
309 PRK08233 hypothetical protein; 62.6 2.8 6.1E-05 33.1 0.3 16 54-69 5-20 (182)
310 cd00071 GMPK Guanosine monopho 62.6 3.3 7.3E-05 31.5 0.7 15 55-69 2-16 (137)
311 TIGR01360 aden_kin_iso1 adenyl 62.5 3 6.4E-05 33.2 0.4 16 54-69 5-20 (188)
312 COG0563 Adk Adenylate kinase a 62.5 3 6.6E-05 33.4 0.5 14 55-68 3-16 (178)
313 COG0467 RAD55 RecA-superfamily 62.4 4.8 0.0001 34.2 1.7 24 44-67 12-38 (260)
314 KOG2655|consensus 62.2 4.2 9E-05 36.4 1.3 25 48-72 17-44 (366)
315 TIGR00643 recG ATP-dependent D 62.2 6.3 0.00014 38.3 2.7 40 26-69 234-273 (630)
316 TIGR01425 SRP54_euk signal rec 62.1 7.9 0.00017 35.6 3.1 20 51-70 99-118 (429)
317 TIGR02746 TraC-F-type type-IV 62.1 2.2 4.8E-05 42.5 -0.4 19 51-69 429-447 (797)
318 PRK06762 hypothetical protein; 62.1 3.2 6.9E-05 32.5 0.6 15 54-68 4-18 (166)
319 COG0630 VirB11 Type IV secreto 62.0 2.1 4.6E-05 37.6 -0.5 20 52-71 143-162 (312)
320 TIGR02329 propionate_PrpR prop 61.9 3.6 7.7E-05 39.0 0.9 44 20-69 209-252 (526)
321 PRK01172 ski2-like helicase; P 61.9 4.9 0.00011 39.3 1.9 23 44-68 31-53 (674)
322 TIGR03345 VI_ClpV1 type VI sec 61.8 7.6 0.00016 39.2 3.2 17 53-69 597-613 (852)
323 cd02019 NK Nucleoside/nucleoti 61.5 3.8 8.1E-05 27.1 0.7 15 55-69 2-16 (69)
324 PRK10867 signal recognition pa 61.5 8.4 0.00018 35.6 3.2 19 52-70 100-118 (433)
325 PF00931 NB-ARC: NB-ARC domain 61.4 7.9 0.00017 33.1 3.0 29 41-69 6-36 (287)
326 PRK14532 adenylate kinase; Pro 60.9 4.1 9E-05 32.6 1.0 15 54-68 2-16 (188)
327 TIGR03263 guanyl_kin guanylate 60.8 4.1 8.9E-05 32.2 1.0 16 54-69 3-18 (180)
328 PRK04301 radA DNA repair and r 60.6 6.6 0.00014 34.5 2.3 29 41-69 88-119 (317)
329 KOG0742|consensus 60.5 4 8.7E-05 37.1 0.9 15 53-67 385-399 (630)
330 TIGR02655 circ_KaiC circadian 60.3 5.6 0.00012 37.3 1.9 26 42-67 8-36 (484)
331 PRK15429 formate hydrogenlyase 60.3 4.4 9.6E-05 39.7 1.3 44 20-69 373-416 (686)
332 cd01366 KISc_C_terminal Kinesi 60.2 12 0.00025 33.2 3.8 44 102-146 56-99 (329)
333 KOG3859|consensus 60.2 3.6 7.7E-05 35.4 0.5 27 43-69 32-59 (406)
334 PRK10820 DNA-binding transcrip 60.1 4.3 9.2E-05 38.5 1.1 44 20-69 201-244 (520)
335 PF12774 AAA_6: Hydrolytic ATP 60.1 5 0.00011 33.7 1.4 18 54-71 34-51 (231)
336 TIGR02238 recomb_DMC1 meiotic 60.0 7.7 0.00017 34.1 2.6 30 40-69 81-113 (313)
337 PRK14721 flhF flagellar biosyn 59.9 2.5 5.5E-05 38.7 -0.4 19 52-70 191-209 (420)
338 PF07693 KAP_NTPase: KAP famil 59.9 6 0.00013 34.6 1.9 20 50-69 18-37 (325)
339 cd00983 recA RecA is a bacter 59.8 7 0.00015 34.6 2.3 32 38-69 37-72 (325)
340 KOG0727|consensus 59.6 4 8.7E-05 34.7 0.7 64 27-91 159-244 (408)
341 PRK14527 adenylate kinase; Pro 59.5 4.5 9.6E-05 32.6 1.0 17 53-69 7-23 (191)
342 PRK14970 DNA polymerase III su 59.5 6.1 0.00013 35.4 2.0 26 44-69 30-56 (367)
343 TIGR00382 clpX endopeptidase C 59.5 3.7 8E-05 37.6 0.5 18 52-69 116-133 (413)
344 PRK03839 putative kinase; Prov 59.3 3.5 7.6E-05 32.8 0.3 14 55-68 3-16 (180)
345 TIGR00631 uvrb excinuclease AB 59.2 5.7 0.00012 38.7 1.8 44 23-71 5-48 (655)
346 TIGR02639 ClpA ATP-dependent C 59.1 4.2 9.2E-05 40.2 0.9 29 43-71 194-222 (731)
347 PRK00300 gmk guanylate kinase; 59.0 4.6 9.9E-05 32.8 1.0 17 53-69 6-22 (205)
348 KOG0738|consensus 59.0 6.4 0.00014 35.6 1.9 30 38-67 227-260 (491)
349 PF03193 DUF258: Protein of un 58.8 6.7 0.00015 30.9 1.8 27 42-70 27-53 (161)
350 KOG0735|consensus 58.8 5.2 0.00011 39.0 1.4 21 49-69 698-718 (952)
351 PF10412 TrwB_AAD_bind: Type I 58.7 2.3 5.1E-05 38.6 -0.9 20 52-71 15-34 (386)
352 TIGR02173 cyt_kin_arch cytidyl 58.6 3.7 8E-05 32.1 0.4 16 54-69 2-17 (171)
353 cd02020 CMPK Cytidine monophos 58.5 4.4 9.6E-05 30.6 0.8 15 55-69 2-16 (147)
354 PLN03187 meiotic recombination 58.5 6.5 0.00014 35.1 1.9 30 39-68 110-142 (344)
355 PRK11784 tRNA 2-selenouridine 58.4 5.1 0.00011 35.8 1.3 35 36-71 126-160 (345)
356 KOG0328|consensus 58.3 10 0.00022 32.8 2.9 26 42-69 56-81 (400)
357 TIGR01074 rep ATP-dependent DN 58.1 3.1 6.6E-05 40.6 -0.2 20 52-71 14-33 (664)
358 TIGR00602 rad24 checkpoint pro 58.1 5.1 0.00011 38.8 1.3 17 54-70 112-128 (637)
359 cd02027 APSK Adenosine 5'-phos 58.1 3.6 7.8E-05 31.8 0.2 15 55-69 2-16 (149)
360 PRK04040 adenylate kinase; Pro 58.1 3.7 8.1E-05 33.2 0.3 16 54-69 4-19 (188)
361 TIGR03880 KaiC_arch_3 KaiC dom 58.1 7 0.00015 32.3 2.0 28 42-69 3-33 (224)
362 PF06745 KaiC: KaiC; InterPro 58.0 4.4 9.5E-05 33.5 0.7 27 42-68 6-35 (226)
363 PF04548 AIG1: AIG1 family; I 58.0 4.9 0.00011 33.1 1.0 16 54-69 2-17 (212)
364 PF01745 IPT: Isopentenyl tran 58.0 4.4 9.5E-05 33.6 0.7 16 54-69 3-18 (233)
365 KOG0390|consensus 57.9 5.6 0.00012 39.2 1.5 39 31-70 242-281 (776)
366 PF00025 Arf: ADP-ribosylation 57.7 7.4 0.00016 30.8 2.0 29 42-70 3-32 (175)
367 COG0324 MiaA tRNA delta(2)-iso 57.7 4.9 0.00011 35.2 1.0 16 54-69 5-20 (308)
368 TIGR01351 adk adenylate kinase 57.7 4.6 0.0001 33.1 0.8 32 55-86 2-33 (210)
369 cd02023 UMPK Uridine monophosp 57.4 2.9 6.2E-05 33.9 -0.5 15 55-69 2-16 (198)
370 cd02025 PanK Pantothenate kina 57.4 2.3 5E-05 35.3 -1.0 13 57-69 4-16 (220)
371 PRK09354 recA recombinase A; P 57.3 6.7 0.00014 35.1 1.8 31 39-69 43-77 (349)
372 PRK11664 ATP-dependent RNA hel 57.3 8.6 0.00019 38.6 2.7 26 42-69 12-37 (812)
373 COG0464 SpoVK ATPases of the A 57.3 6 0.00013 37.1 1.6 56 14-69 233-293 (494)
374 COG3598 RepA RecA-family ATPas 57.2 4.5 9.8E-05 35.6 0.7 46 22-69 60-106 (402)
375 PRK10689 transcription-repair 57.2 8.6 0.00019 40.1 2.8 39 26-68 599-637 (1147)
376 PF00485 PRK: Phosphoribulokin 57.2 3.7 8E-05 33.2 0.1 15 55-69 2-16 (194)
377 TIGR02397 dnaX_nterm DNA polym 57.1 6.8 0.00015 34.8 1.8 35 31-69 18-53 (355)
378 PLN02796 D-glycerate 3-kinase 57.0 2.3 5E-05 37.8 -1.1 15 55-69 103-117 (347)
379 PRK13889 conjugal transfer rel 56.9 4.8 0.0001 41.1 0.9 28 42-70 353-380 (988)
380 PTZ00301 uridine kinase; Provi 56.8 3.3 7.1E-05 34.2 -0.2 15 55-69 6-20 (210)
381 PRK14530 adenylate kinase; Pro 56.8 4.7 0.0001 33.2 0.7 16 54-69 5-20 (215)
382 PF14532 Sigma54_activ_2: Sigm 56.7 4.2 9.1E-05 30.8 0.4 20 50-69 19-38 (138)
383 PRK06851 hypothetical protein; 56.5 4.6 0.0001 36.4 0.6 29 42-70 20-48 (367)
384 PRK10078 ribose 1,5-bisphospho 56.5 5.3 0.00011 32.0 0.9 16 54-69 4-19 (186)
385 PF01926 MMR_HSR1: 50S ribosom 56.2 4.7 0.0001 29.3 0.6 15 55-69 2-16 (116)
386 TIGR02768 TraA_Ti Ti-type conj 56.2 4.9 0.00011 39.8 0.8 29 42-71 359-387 (744)
387 PRK06305 DNA polymerase III su 55.9 8.6 0.00019 35.7 2.3 27 43-69 29-56 (451)
388 PRK06645 DNA polymerase III su 55.8 7.5 0.00016 36.7 1.9 35 31-69 25-60 (507)
389 PTZ00035 Rad51 protein; Provis 55.7 8.2 0.00018 34.4 2.1 31 39-69 102-135 (337)
390 PRK00279 adk adenylate kinase; 55.7 5.2 0.00011 32.9 0.8 32 55-86 3-34 (215)
391 cd00227 CPT Chloramphenicol (C 55.5 5.6 0.00012 31.5 0.9 16 54-69 4-19 (175)
392 smart00488 DEXDc2 DEAD-like he 55.5 6.3 0.00014 34.2 1.3 37 29-71 10-46 (289)
393 smart00489 DEXDc3 DEAD-like he 55.5 6.3 0.00014 34.2 1.3 37 29-71 10-46 (289)
394 PF05872 DUF853: Bacterial pro 55.5 4.5 9.7E-05 37.3 0.4 15 56-70 23-37 (502)
395 KOG0925|consensus 55.2 6.2 0.00013 36.7 1.2 20 50-69 60-79 (699)
396 PRK00091 miaA tRNA delta(2)-is 55.1 5.3 0.00011 35.1 0.8 16 54-69 6-21 (307)
397 KOG2035|consensus 55.1 13 0.00027 32.3 2.9 35 35-69 16-51 (351)
398 TIGR00763 lon ATP-dependent pr 54.9 7 0.00015 39.0 1.7 16 54-69 349-364 (775)
399 PF10923 DUF2791: P-loop Domai 54.7 8.2 0.00018 35.3 1.9 35 34-69 32-66 (416)
400 KOG0741|consensus 54.7 6 0.00013 37.2 1.1 37 29-67 227-271 (744)
401 PRK10865 protein disaggregatio 54.6 4.9 0.00011 40.5 0.5 32 40-71 187-218 (857)
402 TIGR00929 VirB4_CagE type IV s 54.5 3.7 8.1E-05 40.8 -0.3 18 52-69 434-451 (785)
403 PF00158 Sigma54_activat: Sigm 54.5 5.8 0.00013 31.4 0.8 20 49-68 19-38 (168)
404 KOG2228|consensus 54.5 19 0.0004 32.1 3.9 40 27-70 28-67 (408)
405 PRK14528 adenylate kinase; Pro 54.4 4.9 0.00011 32.3 0.4 16 54-69 3-18 (186)
406 PTZ00110 helicase; Provisional 54.2 8.8 0.00019 36.6 2.2 25 43-69 160-184 (545)
407 COG1118 CysA ABC-type sulfate/ 54.2 3.7 8.1E-05 35.9 -0.3 43 205-256 176-219 (345)
408 TIGR03117 cas_csf4 CRISPR-asso 54.2 9.8 0.00021 36.9 2.5 33 31-69 1-33 (636)
409 KOG1534|consensus 54.2 7 0.00015 32.4 1.2 43 202-244 209-251 (273)
410 PRK12727 flagellar biosynthesi 54.1 3.9 8.4E-05 38.7 -0.2 18 53-70 351-368 (559)
411 PRK02496 adk adenylate kinase; 53.7 5.9 0.00013 31.6 0.8 15 55-69 4-18 (184)
412 TIGR01447 recD exodeoxyribonuc 53.5 5.4 0.00012 38.3 0.6 26 43-70 153-178 (586)
413 KOG1532|consensus 53.5 6.9 0.00015 33.7 1.2 19 51-69 18-36 (366)
414 PF04466 Terminase_3: Phage te 53.3 4.4 9.6E-05 36.8 0.0 17 55-71 5-21 (387)
415 TIGR00231 small_GTP small GTP- 53.3 6 0.00013 29.6 0.7 17 54-70 3-19 (161)
416 TIGR00235 udk uridine kinase. 53.2 5.1 0.00011 32.8 0.3 17 53-69 7-23 (207)
417 PRK09302 circadian clock prote 53.1 8.7 0.00019 36.2 1.9 29 40-68 16-47 (509)
418 PF04670 Gtr1_RagA: Gtr1/RagA 53.1 5.6 0.00012 33.4 0.6 13 55-67 2-14 (232)
419 PHA02530 pseT polynucleotide k 53.0 5.4 0.00012 34.5 0.5 17 53-69 3-19 (300)
420 PRK11608 pspF phage shock prot 52.9 7 0.00015 34.6 1.2 42 22-69 5-46 (326)
421 TIGR03346 chaperone_ClpB ATP-d 52.8 5.6 0.00012 40.1 0.6 32 40-71 182-213 (852)
422 cd00544 CobU Adenosylcobinamid 52.8 6.2 0.00013 31.3 0.8 13 55-67 2-14 (169)
423 COG1122 CbiO ABC-type cobalt t 52.7 6.6 0.00014 33.0 0.9 17 53-69 31-47 (235)
424 TIGR00174 miaA tRNA isopenteny 52.7 6.1 0.00013 34.3 0.8 15 55-69 2-16 (287)
425 TIGR00390 hslU ATP-dependent p 52.4 5.5 0.00012 36.6 0.4 17 53-69 48-64 (441)
426 TIGR02767 TraG-Ti Ti-type conj 52.2 7.1 0.00015 37.8 1.2 19 51-69 210-228 (623)
427 PRK05800 cobU adenosylcobinami 52.2 6.3 0.00014 31.3 0.7 15 54-68 3-17 (170)
428 TIGR03346 chaperone_ClpB ATP-d 52.1 11 0.00023 38.2 2.4 18 52-69 595-612 (852)
429 COG1137 YhbG ABC-type (unclass 52.1 8.2 0.00018 31.8 1.3 16 55-70 33-48 (243)
430 TIGR03878 thermo_KaiC_2 KaiC d 52.1 7.1 0.00015 33.3 1.1 16 52-67 36-51 (259)
431 cd03274 ABC_SMC4_euk Eukaryoti 52.0 4.4 9.6E-05 33.4 -0.2 16 54-69 27-42 (212)
432 PRK14964 DNA polymerase III su 51.9 9.5 0.00021 35.8 1.9 22 48-69 30-52 (491)
433 COG4650 RtcR Sigma54-dependent 51.9 9.2 0.0002 33.3 1.7 33 34-67 191-223 (531)
434 KOG0354|consensus 51.9 12 0.00025 36.8 2.5 25 41-68 68-92 (746)
435 PRK15483 type III restriction- 51.8 7.6 0.00016 39.4 1.3 16 56-71 63-78 (986)
436 PRK13767 ATP-dependent helicas 51.5 10 0.00022 38.4 2.2 25 43-69 40-64 (876)
437 PRK04296 thymidine kinase; Pro 51.4 3.8 8.2E-05 33.1 -0.7 18 54-71 4-21 (190)
438 PRK05057 aroK shikimate kinase 51.3 7.3 0.00016 30.9 1.0 17 53-69 5-21 (172)
439 TIGR00959 ffh signal recogniti 51.3 6.1 0.00013 36.4 0.6 18 52-69 99-116 (428)
440 PF02702 KdpD: Osmosensitive K 51.3 3.3 7.1E-05 33.9 -1.0 12 60-71 13-24 (211)
441 KOG0924|consensus 51.1 6.6 0.00014 38.1 0.8 20 50-69 369-388 (1042)
442 PF04665 Pox_A32: Poxvirus A32 51.0 7 0.00015 33.0 0.8 16 54-69 15-30 (241)
443 COG4778 PhnL ABC-type phosphon 51.0 4.6 9.9E-05 32.4 -0.2 17 53-69 38-54 (235)
444 PRK09825 idnK D-gluconate kina 51.0 6.3 0.00014 31.4 0.5 16 54-69 5-20 (176)
445 cd01853 Toc34_like Toc34-like 50.8 5.1 0.00011 34.0 -0.0 20 50-69 29-48 (249)
446 PF01443 Viral_helicase1: Vira 50.8 3.7 8E-05 33.9 -0.9 17 55-71 1-17 (234)
447 PLN02200 adenylate kinase fami 50.7 7.5 0.00016 32.6 1.0 35 52-86 43-77 (234)
448 TIGR03574 selen_PSTK L-seryl-t 50.7 5.7 0.00012 33.5 0.3 15 55-69 2-16 (249)
449 cd02028 UMPK_like Uridine mono 50.7 5.9 0.00013 31.7 0.3 15 55-69 2-16 (179)
450 KOG0744|consensus 50.7 8.8 0.00019 33.9 1.4 21 51-71 176-196 (423)
451 PLN02165 adenylate isopentenyl 50.7 7.1 0.00015 34.6 0.9 23 48-70 39-61 (334)
452 PF10662 PduV-EutP: Ethanolami 50.6 7 0.00015 30.1 0.7 15 55-69 4-18 (143)
453 TIGR01650 PD_CobS cobaltochela 50.5 8.7 0.00019 34.0 1.4 39 29-69 42-81 (327)
454 PRK13880 conjugal transfer cou 50.3 9.3 0.0002 37.2 1.7 19 52-70 175-193 (636)
455 TIGR01587 cas3_core CRISPR-ass 50.3 6.8 0.00015 34.9 0.7 15 55-69 2-16 (358)
456 cd03279 ABC_sbcCD SbcCD and ot 50.2 5 0.00011 33.0 -0.2 18 52-69 28-45 (213)
457 PRK05416 glmZ(sRNA)-inactivati 50.1 4.4 9.5E-05 35.2 -0.5 18 54-71 8-25 (288)
458 PRK14737 gmk guanylate kinase; 50.1 7.7 0.00017 31.3 0.9 17 53-69 5-21 (186)
459 PRK01184 hypothetical protein; 50.0 6.2 0.00013 31.4 0.4 15 54-68 3-17 (184)
460 PRK14956 DNA polymerase III su 49.9 15 0.00032 34.4 2.8 35 31-69 22-57 (484)
461 KOG0736|consensus 49.9 7.5 0.00016 38.2 0.9 45 23-67 672-720 (953)
462 cd00876 Ras Ras family. The R 49.8 7.2 0.00016 29.6 0.7 15 55-69 2-16 (160)
463 PRK13721 conjugal transfer ATP 49.6 4.8 0.0001 40.5 -0.4 19 51-69 448-466 (844)
464 TIGR00176 mobB molybdopterin-g 49.6 4.5 9.8E-05 31.6 -0.5 15 55-69 2-16 (155)
465 PRK11034 clpA ATP-dependent Cl 49.5 6.4 0.00014 39.1 0.4 20 52-71 207-226 (758)
466 TIGR00554 panK_bact pantothena 49.5 12 0.00025 32.6 2.0 19 51-69 61-79 (290)
467 TIGR02239 recomb_RAD51 DNA rep 49.4 15 0.00032 32.4 2.7 31 40-70 81-114 (316)
468 PRK05480 uridine/cytidine kina 49.3 8.6 0.00019 31.3 1.1 19 51-69 5-23 (209)
469 PRK06731 flhF flagellar biosyn 49.3 5.8 0.00012 34.2 0.1 18 53-70 76-93 (270)
470 TIGR00580 mfd transcription-re 49.2 14 0.00031 37.5 2.8 27 43-69 463-489 (926)
471 PRK05541 adenylylsulfate kinas 49.1 8 0.00017 30.5 0.9 17 53-69 8-24 (176)
472 PF14553 YqbF: YqbF, hypotheti 49.0 9.8 0.00021 22.7 1.0 8 64-71 3-10 (43)
473 TIGR01243 CDC48 AAA family ATP 49.0 6.9 0.00015 38.8 0.6 17 53-69 488-504 (733)
474 PF01078 Mg_chelatase: Magnesi 49.0 11 0.00023 31.0 1.6 17 53-69 23-39 (206)
475 KOG0330|consensus 49.0 11 0.00024 34.0 1.8 22 200-224 286-307 (476)
476 cd04139 RalA_RalB RalA/RalB su 48.9 7.6 0.00017 29.7 0.7 16 54-69 2-17 (164)
477 cd04163 Era Era subfamily. Er 48.6 7.9 0.00017 29.4 0.8 17 53-69 4-20 (168)
478 PRK07940 DNA polymerase III su 48.6 7.5 0.00016 35.4 0.7 19 51-69 35-53 (394)
479 PRK11773 uvrD DNA-dependent he 48.6 5.4 0.00012 39.4 -0.2 20 52-71 22-41 (721)
480 PRK13873 conjugal transfer ATP 48.5 4.8 0.0001 40.4 -0.6 17 53-69 442-458 (811)
481 PTZ00088 adenylate kinase 1; P 48.4 7.9 0.00017 32.4 0.8 32 55-86 9-40 (229)
482 PRK13822 conjugal transfer cou 48.3 9.5 0.00021 37.1 1.4 18 52-69 224-241 (641)
483 PRK11545 gntK gluconate kinase 48.1 5.5 0.00012 31.3 -0.2 13 58-70 1-13 (163)
484 cd01860 Rab5_related Rab5-rela 48.0 9.5 0.00021 29.2 1.2 17 53-69 2-18 (163)
485 PLN03186 DNA repair protein RA 48.0 16 0.00034 32.7 2.6 30 40-69 108-140 (342)
486 cd03238 ABC_UvrA The excision 48.0 5 0.00011 32.1 -0.5 17 54-70 23-39 (176)
487 COG0552 FtsY Signal recognitio 47.9 20 0.00043 31.8 3.1 20 50-69 137-156 (340)
488 cd03240 ABC_Rad50 The catalyti 47.7 8.8 0.00019 31.4 0.9 17 54-70 24-40 (204)
489 PRK11823 DNA repair protein Ra 47.7 12 0.00027 34.6 2.0 30 40-69 65-97 (446)
490 COG1198 PriA Primosomal protei 47.6 11 0.00025 37.0 1.8 35 29-69 200-234 (730)
491 TIGR01073 pcrA ATP-dependent D 47.6 5.8 0.00012 39.2 -0.2 20 52-71 17-36 (726)
492 PRK09401 reverse gyrase; Revie 47.4 15 0.00033 38.5 2.7 23 43-67 88-110 (1176)
493 PRK13947 shikimate kinase; Pro 47.3 7.3 0.00016 30.5 0.4 15 54-68 3-17 (171)
494 cd01918 HprK_C HprK/P, the bif 47.3 11 0.00023 29.4 1.3 19 51-69 13-31 (149)
495 PRK13531 regulatory ATPase Rav 47.2 12 0.00026 35.0 1.8 19 51-69 38-56 (498)
496 KOG0922|consensus 47.1 9.8 0.00021 36.6 1.2 19 51-69 65-83 (674)
497 PRK08533 flagellar accessory p 47.1 9.5 0.00021 31.9 1.1 18 52-69 24-41 (230)
498 TIGR01075 uvrD DNA helicase II 47.0 6.1 0.00013 39.0 -0.2 20 52-71 17-36 (715)
499 TIGR01547 phage_term_2 phage t 47.0 5.7 0.00012 36.0 -0.3 17 54-70 3-19 (396)
500 PF05707 Zot: Zonular occluden 46.9 7.3 0.00016 31.5 0.3 15 55-69 3-17 (193)
No 1
>KOG0245|consensus
Probab=100.00 E-value=2e-65 Score=475.34 Aligned_cols=262 Identities=52% Similarity=0.795 Sum_probs=228.0
Q ss_pred CCCCCCCcceeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC--CCCCCCC
Q psy37 3 TDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK--ATTDNSP 80 (279)
Q Consensus 3 ~~~~~~~~~~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~--~~~G~~~ 80 (279)
.|.+++...+|+||++||+||..=+--++|.+||+.++.|+++.+++|||+||||||||||||||||+|-+ +++||||
T Consensus 39 ~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIP 118 (1221)
T KOG0245|consen 39 NPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIP 118 (1221)
T ss_pred cCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchh
Confidence 46677888889999999999998888899999999999999999999999999999999999999999987 8899999
Q ss_pred CccccceecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccc-cCCCceEEEe----------------
Q psy37 81 DAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQ-TGSGKTFTMM---------------- 143 (279)
Q Consensus 81 ~~~~~l~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~-~~~~~~~~~~---------------- 143 (279)
+.+.+| |..+....... .. +.+-+|++|||+|.|.|||+ +.+.....++
T Consensus 119 rlCEeL-F~ri~~nq~~~---~s----------y~VevSymEIYcErVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~a 184 (1221)
T KOG0245|consen 119 RLCEEL-FSRIADNQSQQ---MS----------YSVEVSYMEIYCERVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLA 184 (1221)
T ss_pred HHHHHH-HHHHhhccccc---ce----------EEEEEeehhHHHHHHHHHhhCCCCCCCceeeccCccChhHhHhhhcc
Confidence 999999 98876433322 22 45555899999999999987 4444333333
Q ss_pred -------------ccccc-------------------------------------------cccCccccchhhhhhhhhh
Q psy37 144 -------------GSKAR-------------------------------------------NFGEGKDCVCSIVEAGDRL 167 (279)
Q Consensus 144 -------------g~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~ 167 (279)
|++.| ...+|+|+.......|.|+
T Consensus 185 V~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RL 264 (1221)
T KOG0245|consen 185 VTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRL 264 (1221)
T ss_pred cccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccCcccccccCCCccch
Confidence 11111 1126777777777899999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhC---CCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHH
Q psy37 168 KEGAHINKSLVTLGSVISSLAELST---KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANR 244 (279)
Q Consensus 168 ~e~~~in~Sl~~L~~~i~~l~~~~~---~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~ 244 (279)
+|+.+||+||++||+||.||++.+. ++..+||||||.||+||++.||||+||+||++|||...+|+|||+|||||.|
T Consensus 265 KEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdR 344 (1221)
T KOG0245|consen 265 KEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADR 344 (1221)
T ss_pred hcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhH
Confidence 9999999999999999999999774 5567899999999999999999999999999999999999999999999999
Q ss_pred hccccCcccccCCccHHHHHHHHHHHHHHHHHhc
Q psy37 245 AKNIINKPTVNEDPNTRIIRELHDEITKLKAMLT 278 (279)
Q Consensus 245 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~Lk~~l~ 278 (279)
+|+|+|++++|++++..+|++|++|+.+||++|.
T Consensus 345 AK~Iv~~avVNEdpnaKLIRELreEv~rLksll~ 378 (1221)
T KOG0245|consen 345 AKQIVNNAVVNEDPNAKLIRELREEVARLKSLLR 378 (1221)
T ss_pred hhhhhccceeCCCccHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999874
No 2
>KOG4280|consensus
Probab=100.00 E-value=9.8e-64 Score=452.24 Aligned_cols=241 Identities=44% Similarity=0.623 Sum_probs=204.0
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCC-CCCCCCCCCccccceecccccccCCC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS-KATTDNSPDAHKDFTFDHSYWSFDPS 98 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~-~~~~G~~~~~~~~l~f~~~~~~~~~~ 98 (279)
|.||.||+++++|++||..++.|+|++|++|||+||||||||||||||||.|+ .+..||||+++.+| |.++....+..
T Consensus 54 ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~L-F~~I~~~~~~~ 132 (574)
T KOG4280|consen 54 FTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHL-FRHIDERKEKT 132 (574)
T ss_pred ceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHH-HHHHHhccccc
Confidence 77778889999999999999999999999999999999999999999999999 66799999999999 99987654332
Q ss_pred CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEe-----------------------------ccccc-
Q psy37 99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM-----------------------------GSKAR- 148 (279)
Q Consensus 99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~-----------------------------g~~~~- 148 (279)
. +.+.+|++|+||+.|+||+.+...+...+. |..+|
T Consensus 133 --~------------f~vrvS~lEiYnE~i~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~ 198 (574)
T KOG4280|consen 133 --R------------FLVRVSYLEIYNESIRDLLSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRR 198 (574)
T ss_pred --e------------EEEEeehHHHHhHHHHHHhCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcc
Confidence 1 334447777777777777765542111111 11111
Q ss_pred -----------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy37 149 -----------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSL 187 (279)
Q Consensus 149 -----------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l 187 (279)
...+|+++.......|++++|+.+||+||++||+||.+|
T Consensus 199 vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aL 278 (574)
T KOG4280|consen 199 VGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISAL 278 (574)
T ss_pred hhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHH
Confidence 111455555555578999999999999999999999999
Q ss_pred HhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHHHHHHHH
Q psy37 188 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELH 267 (279)
Q Consensus 188 ~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~~~~~l~ 267 (279)
++ ..+.||||||||||+||+|+|||||+|+||+||+|+..++.||++||+||+|++.|+|.|++|.++....++.|+
T Consensus 279 vd---~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq 355 (574)
T KOG4280|consen 279 VD---GSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQ 355 (574)
T ss_pred hc---cccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHH
Confidence 97 444499999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q psy37 268 DEITKLKAMLT 278 (279)
Q Consensus 268 ~~~~~Lk~~l~ 278 (279)
++|..||.+|.
T Consensus 356 ~ei~~Lk~~l~ 366 (574)
T KOG4280|consen 356 EEIERLKKELD 366 (574)
T ss_pred HHHHHHHHhhc
Confidence 99999999885
No 3
>KOG0243|consensus
Probab=100.00 E-value=1.7e-60 Score=448.97 Aligned_cols=238 Identities=39% Similarity=0.537 Sum_probs=203.5
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC--------CCCCCCCCCCccccceeccc
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG--------SKATTDNSPDAHKDFTFDHS 91 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G--------~~~~~G~~~~~~~~l~f~~~ 91 (279)
|.||+||+|++.|++||+.++.|+|+.|+.|||||||||||||+||||||.| .+...|+|||++.+| |+..
T Consensus 97 ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~I-Fd~L 175 (1041)
T KOG0243|consen 97 FTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQI-FDTL 175 (1041)
T ss_pred eecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHH-HHHH
Confidence 7999999999999999999999999999999999999999999999999999 567899999999999 9877
Q ss_pred ccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc--e---------------EEEe-----------
Q psy37 92 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK--T---------------FTMM----------- 143 (279)
Q Consensus 92 ~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~--~---------------~~~~----------- 143 (279)
.... .. |.+.++++|.|||.++|||.+.... . ..+.
T Consensus 176 e~~~-~E---------------YsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ 239 (1041)
T KOG0243|consen 176 EAQG-AE---------------YSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNAD 239 (1041)
T ss_pred HhcC-Ce---------------EEEEEEehhhhhHHHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchh
Confidence 5433 11 4455588888888888888755432 1 1111
Q ss_pred --------------------------------------------------ccccccccCccccchhhhhhhhhhhhhhHH
Q psy37 144 --------------------------------------------------GSKARNFGEGKDCVCSIVEAGDRLKEGAHI 173 (279)
Q Consensus 144 --------------------------------------------------g~~~~~~~~~~~~~~~~~~~~~~~~e~~~i 173 (279)
|..+....+|+|.+.+-+..+.|-+|++.|
T Consensus 240 ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~I 319 (1041)
T KOG0243|consen 240 EIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEI 319 (1041)
T ss_pred HHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhh
Confidence 111112226777776666777899999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccc
Q psy37 174 NKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPT 253 (279)
Q Consensus 174 n~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~ 253 (279)
|+||.+||+||.||++ +..|||||+|||||||+|+|||..+|+||+||||+..+.+||++||.||.||+.|+|+|.
T Consensus 320 NqSLLTLGRVInALVe----~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPe 395 (1041)
T KOG0243|consen 320 NQSLLTLGRVINALVE----HSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPE 395 (1041)
T ss_pred hHHHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCc
Confidence 9999999999999996 888999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccH-HHHHHHHHHHHHHHHHhc
Q psy37 254 VNEDPNT-RIIRELHDEITKLKAMLT 278 (279)
Q Consensus 254 ~~~~~~~-~~~~~l~~~~~~Lk~~l~ 278 (279)
+|+.-.. ..++.|-.||++||+.|.
T Consensus 396 vNQkl~K~~llKd~~~EIerLK~dl~ 421 (1041)
T KOG0243|consen 396 VNQKLMKKTLLKDLYEEIERLKRDLA 421 (1041)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9986654 567999999999999874
No 4
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.5e-57 Score=431.89 Aligned_cols=255 Identities=39% Similarity=0.534 Sum_probs=202.9
Q ss_pred eeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC----------CCCCCCCC
Q psy37 12 DFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK----------ATTDNSPD 81 (279)
Q Consensus 12 ~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~----------~~~G~~~~ 81 (279)
....+...|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+. .++||+|+
T Consensus 126 sl~I~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPR 205 (1320)
T PLN03188 126 SLTINGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPR 205 (1320)
T ss_pred eEEEeCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHH
Confidence 34455667999999999999999999999999999999999999999999999999999963 56899999
Q ss_pred ccccceecccccccC-CCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce---------EEEe--------
Q psy37 82 AHKDFTFDHSYWSFD-PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT---------FTMM-------- 143 (279)
Q Consensus 82 ~~~~l~f~~~~~~~~-~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~---------~~~~-------- 143 (279)
++++| |..+..... .... ...+.+..+++|+|++.|+|||.+..... ..+.
T Consensus 206 aledL-F~~I~e~q~k~~d~----------~~~y~V~vSyLEIYNEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~ 274 (1320)
T PLN03188 206 VFERL-FARINEEQIKHADR----------QLKYQCRCSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVK 274 (1320)
T ss_pred HHHHH-HHHHHhhhhhcccc----------ccceEEEEEEEeeecCcceeccccccCCceEEEcCCCCeEeCCCeEEeCC
Confidence 99999 987643211 0001 11245666999999999999997542111 1111
Q ss_pred -----------ccccc-------------------------------------------cccCccccchhhhhhhhhhhh
Q psy37 144 -----------GSKAR-------------------------------------------NFGEGKDCVCSIVEAGDRLKE 169 (279)
Q Consensus 144 -----------g~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~e 169 (279)
|...| ...+|+|++......|.+++|
T Consensus 275 S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkE 354 (1320)
T PLN03188 275 TMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKE 354 (1320)
T ss_pred CHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHH
Confidence 11111 111455555445567889999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh-CCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37 170 GAHINKSLVTLGSVISSLAELS-TKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248 (279)
Q Consensus 170 ~~~in~Sl~~L~~~i~~l~~~~-~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i 248 (279)
+..||+||++|++||.+|++.. ..+..|||||+||||+||+|+|||+++|+||+||||...++.||++||+||+++++|
T Consensus 355 A~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~I 434 (1320)
T PLN03188 355 AGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAI 434 (1320)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998743 345679999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCcc------HHHHHHHHHHHHHHHHHh
Q psy37 249 INKPTVNEDPN------TRIIRELHDEITKLKAML 277 (279)
Q Consensus 249 ~~~~~~~~~~~------~~~~~~l~~~~~~Lk~~l 277 (279)
+|.|++|.... ...+++|+.||.+||...
T Consensus 435 KNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 435 KNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANG 469 (1320)
T ss_pred CccceeccchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999997543 336677777887777654
No 5
>KOG0242|consensus
Probab=100.00 E-value=3.9e-57 Score=423.96 Aligned_cols=243 Identities=40% Similarity=0.554 Sum_probs=204.2
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP 97 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~ 97 (279)
.-|.||+||+++++|++||+..++|+|+.|++|+|++|||||||||||||||.|..++||++|.++++| |..+....+.
T Consensus 53 ~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~di-f~~I~~~~~r 131 (675)
T KOG0242|consen 53 EKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDI-FEKIDKSGER 131 (675)
T ss_pred cceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHH-HHHHHhcCCc
Confidence 568999999999999999999999999999999999999999999999999999999999999999999 9988644322
Q ss_pred CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce---------EEEec-------------------c----
Q psy37 98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT---------FTMMG-------------------S---- 145 (279)
Q Consensus 98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~---------~~~~g-------------------~---- 145 (279)
. +.+..|++|||||.|+||+.++.+.. .++.| .
T Consensus 132 ~---------------f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~ 196 (675)
T KOG0242|consen 132 E---------------FSVRVSYLEIYNERIRDLLNPDGGDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRT 196 (675)
T ss_pred e---------------eEEEEEEEEEeccccccccCCCCCCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCc
Confidence 1 55666999999999999997654321 11111 1
Q ss_pred ----------------------------------ccccccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q psy37 146 ----------------------------------KARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELS 191 (279)
Q Consensus 146 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~~~~ 191 (279)
..-...+|+|+..+..+.|.|+.|+++||+||++|++||.+|.+.
T Consensus 197 ~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~- 275 (675)
T KOG0242|consen 197 TGETNLNEQSSRSHAILRITVESRGREASSRVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEG- 275 (675)
T ss_pred ccccccccccchhhheeeEEEEeccccccchhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccc-
Confidence 111222566666667788899999999999999999999999862
Q ss_pred CCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHH-HHHHHHHHH
Q psy37 192 TKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTR-IIRELHDEI 270 (279)
Q Consensus 192 ~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~-~~~~l~~~~ 270 (279)
....|||||||||||||+++|||+++|++||||+|...+++||.+||+||+++++|++.+.+|.-..+. +++.+.+++
T Consensus 276 -~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i 354 (675)
T KOG0242|consen 276 -KRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREI 354 (675)
T ss_pred -cccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHH
Confidence 235599999999999999999999999999999999999999999999999999999999999755543 344556888
Q ss_pred HHHHHHhc
Q psy37 271 TKLKAMLT 278 (279)
Q Consensus 271 ~~Lk~~l~ 278 (279)
..|+++++
T Consensus 355 ~~l~~e~~ 362 (675)
T KOG0242|consen 355 AELEAELE 362 (675)
T ss_pred HHHHHHHH
Confidence 88887775
No 6
>KOG0241|consensus
Probab=100.00 E-value=1.2e-55 Score=405.65 Aligned_cols=258 Identities=50% Similarity=0.806 Sum_probs=220.0
Q ss_pred CCcceeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccce
Q psy37 8 DAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFT 87 (279)
Q Consensus 8 ~~~~~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~ 87 (279)
+.-++|.|||-||+.|.--.--+.|+.||+.++..+++++++|||+||||||||||||||||.|..++|||||+.+..|
T Consensus 50 k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~l- 128 (1714)
T KOG0241|consen 50 KGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESL- 128 (1714)
T ss_pred CCCceeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHH-
Confidence 4568899999999888766666899999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce-EEEe-----------------------
Q psy37 88 FDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT-FTMM----------------------- 143 (279)
Q Consensus 88 f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~-~~~~----------------------- 143 (279)
|..+.....+.-. +.+-.+++|+|++.++||+++..+.. ..+.
T Consensus 129 Fe~I~k~~n~~~t-------------fkVeVSymEIynEkv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdI 195 (1714)
T KOG0241|consen 129 FERIDKESNPSQT-------------FKVEVSYMEIYNEKVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDI 195 (1714)
T ss_pred HHHHHhccCCCce-------------EEEEEEHHHHhhcchhhhhCCCCCcceeEEeecccccccccchhhhhcccHHHH
Confidence 9988754432211 44444899999999999987554322 2111
Q ss_pred ------ccccccc-------------------------------------------cCccccchhhhhhhhhhhhhhHHH
Q psy37 144 ------GSKARNF-------------------------------------------GEGKDCVCSIVEAGDRLKEGAHIN 174 (279)
Q Consensus 144 ------g~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~e~~~in 174 (279)
|.+.+.+ .+++++.......|.+++|+.+||
T Consensus 196 d~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNin 275 (1714)
T KOG0241|consen 196 DSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNIN 275 (1714)
T ss_pred HHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcc
Confidence 1111111 145566666668899999999999
Q ss_pred HHHHHHHHHHHHHHhhhC--CCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcc
Q psy37 175 KSLVTLGSVISSLAELST--KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKP 252 (279)
Q Consensus 175 ~Sl~~L~~~i~~l~~~~~--~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~ 252 (279)
+||++|+.||.+|++... .+.+.||||||.||.||+|.|||||+|+||+||||...+|+||++|||||.++|+|+|..
T Consensus 276 kSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~a 355 (1714)
T KOG0241|consen 276 KSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHA 355 (1714)
T ss_pred hhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccc
Confidence 999999999999998653 347799999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccHHHHHHHHHHHHHHHHHhcC
Q psy37 253 TVNEDPNTRIIRELHDEITKLKAMLTS 279 (279)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~~Lk~~l~~ 279 (279)
++|.+|+...+++||+|++.|+.+|++
T Consensus 356 vvNedpnarvirElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 356 VVNEDPNARVIRELREEVEKLREQLEQ 382 (1714)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999874
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.9e-55 Score=388.22 Aligned_cols=220 Identities=38% Similarity=0.530 Sum_probs=178.8
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC--------CCCCCCCccccceec
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA--------TTDNSPDAHKDFTFD 89 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~--------~~G~~~~~~~~l~f~ 89 (279)
..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.. .+|++|+++++| |.
T Consensus 41 ~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~L-f~ 119 (337)
T cd01373 41 RMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYL-FS 119 (337)
T ss_pred cEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHH-HH
Confidence 468999999999999999999999999999999999999999999999999999763 589999999999 98
Q ss_pred ccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceE---------EEecc---------------
Q psy37 90 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF---------TMMGS--------------- 145 (279)
Q Consensus 90 ~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~---------~~~g~--------------- 145 (279)
.+......... ...+.+..+++|+|++.++|||.+...... .+.|.
T Consensus 120 ~i~~~~~~~~~----------~~~~~v~~S~~EIyne~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll 189 (337)
T cd01373 120 LIQREEEKRGD----------GLKFLCKCSFLEIYNEQITDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVL 189 (337)
T ss_pred HHHhhhhhccc----------CceEEEEEEEEeecCCEeeeCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHH
Confidence 76533221111 112455669999999999999965432111 11111
Q ss_pred ----cccc-----------------------------------------ccCccccchhhhhhhhhhhhhhHHHHHHHHH
Q psy37 146 ----KARN-----------------------------------------FGEGKDCVCSIVEAGDRLKEGAHINKSLVTL 180 (279)
Q Consensus 146 ----~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L 180 (279)
..|. ..+|+|+.......|.+++|+..||+||++|
T Consensus 190 ~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L 269 (337)
T cd01373 190 LKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTL 269 (337)
T ss_pred HHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHH
Confidence 1110 1134444444446688899999999999999
Q ss_pred HHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37 181 GSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248 (279)
Q Consensus 181 ~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i 248 (279)
++||.+|++.+..+..|||||+||||+||+|+|||+++|+||+||+|+..+++||++||+||+++++|
T Consensus 270 ~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 270 GHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999766566899999999999999999999999999999999999999999999999999976
No 8
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.3e-54 Score=381.59 Aligned_cols=216 Identities=44% Similarity=0.611 Sum_probs=178.4
Q ss_pred cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccC
Q psy37 17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFD 96 (279)
Q Consensus 17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~ 96 (279)
...|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|+..++|++|+++++| |..+....+
T Consensus 53 ~~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~L-F~~i~~~~~ 131 (338)
T cd01370 53 ELKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDL-FDKIEERKD 131 (338)
T ss_pred ceEEEeccccCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHH-HHhhhhccc
Confidence 3458999999999999999999999999999999999999999999999999999999999999999999 988754331
Q ss_pred CCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceE---------EEe-------------------ccccc
Q psy37 97 PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF---------TMM-------------------GSKAR 148 (279)
Q Consensus 97 ~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~---------~~~-------------------g~~~~ 148 (279)
...+.+..+++|+|+++++||+.+...... .+. |...|
T Consensus 132 --------------~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R 197 (338)
T cd01370 132 --------------DKEFEVSLSYLEIYNETIRDLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNR 197 (338)
T ss_pred --------------CceEEEEEEEEEEECCEEEECCCCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhc
Confidence 112456669999999999999975321111 111 00010
Q ss_pred ------------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy37 149 ------------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISS 186 (279)
Q Consensus 149 ------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~ 186 (279)
...+|+|+.......+.+++|+..||+||++|++||.+
T Consensus 198 ~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~ 277 (338)
T cd01370 198 TQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINA 277 (338)
T ss_pred ccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHH
Confidence 01144555444456778899999999999999999999
Q ss_pred HHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37 187 LAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248 (279)
Q Consensus 187 l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i 248 (279)
|++.+. +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+++|+|
T Consensus 278 L~~~~~-~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 278 LVDGKK-KNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred HHhccC-CCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 996322 3489999999999999999999999999999999999999999999999999986
No 9
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.3e-53 Score=379.79 Aligned_cols=233 Identities=54% Similarity=0.835 Sum_probs=185.1
Q ss_pred CcceeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCcccccee
Q psy37 9 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTF 88 (279)
Q Consensus 9 ~~~~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f 88 (279)
..+.|.||++|+.+|...+..++|++||+.++.|+|+++++|+|+||||||||||||||||+|+..++|++|+++++| |
T Consensus 46 ~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~L-f 124 (356)
T cd01365 46 KPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEEL-F 124 (356)
T ss_pred CceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHH-H
Confidence 445555555555555554555999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCC--CceEE----------Eec------------
Q psy37 89 DHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS--GKTFT----------MMG------------ 144 (279)
Q Consensus 89 ~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~--~~~~~----------~~g------------ 144 (279)
+........ ...+.+..+++|+|+++++||+.... ..... +.|
T Consensus 125 ~~~~~~~~~-------------~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~ 191 (356)
T cd01365 125 QRIESKKEQ-------------NLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDI 191 (356)
T ss_pred HHHhhcccc-------------CceEEEEEEEEEEECCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHH
Confidence 877543321 11144556999999999999998663 11111 111
Q ss_pred -------ccccc--------cc-----------------------------------CccccchhhhhhhhhhhhhhHHH
Q psy37 145 -------SKARN--------FG-----------------------------------EGKDCVCSIVEAGDRLKEGAHIN 174 (279)
Q Consensus 145 -------~~~~~--------~~-----------------------------------~~~~~~~~~~~~~~~~~e~~~in 174 (279)
...|. .+ +|+|+.......+.+++|+..||
T Consensus 192 ~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN 271 (356)
T cd01365 192 QNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNIN 271 (356)
T ss_pred HHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHh
Confidence 11110 01 23333333335677889999999
Q ss_pred HHHHHHHHHHHHHHhhhC----CCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccC
Q psy37 175 KSLVTLGSVISSLAELST----KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIIN 250 (279)
Q Consensus 175 ~Sl~~L~~~i~~l~~~~~----~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~ 250 (279)
+||++|++||.+|++.+. .+..|||||+||||++|+++|||+++++||+||+|...+++||++||+||+++++|++
T Consensus 272 ~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~ 351 (356)
T cd01365 272 KSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVN 351 (356)
T ss_pred HHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccC
Confidence 999999999999987542 3578999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q psy37 251 KPTVN 255 (279)
Q Consensus 251 ~~~~~ 255 (279)
.|++|
T Consensus 352 ~~~~~ 356 (356)
T cd01365 352 VAVVN 356 (356)
T ss_pred ccccC
Confidence 99876
No 10
>KOG0240|consensus
Probab=100.00 E-value=3e-54 Score=381.72 Aligned_cols=224 Identities=40% Similarity=0.501 Sum_probs=187.9
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC---CCCCCCCccccceecccccc
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA---TTDNSPDAHKDFTFDHSYWS 94 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~---~~G~~~~~~~~l~f~~~~~~ 94 (279)
..|.||+||.|+++|++||+.++.|+|++|+.|||+||||||||||||||||.|... ..|++||++++| |..++..
T Consensus 49 ~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~di-F~~Iys~ 127 (607)
T KOG0240|consen 49 KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDI-FDHIYSM 127 (607)
T ss_pred ccceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHH-HHHHhcC
Confidence 568999999999999999999999999999999999999999999999999999876 469999999999 9998754
Q ss_pred cCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc---------eEEEe----------------------
Q psy37 95 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK---------TFTMM---------------------- 143 (279)
Q Consensus 95 ~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~---------~~~~~---------------------- 143 (279)
... +.+.+.++++|+|.++++||+.+.... ...+.
T Consensus 128 ~~n--------------~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~ 193 (607)
T KOG0240|consen 128 EEN--------------LEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKS 193 (607)
T ss_pred ccc--------------ceEEEEEEeehhhhhHHHHHhCcccCCceeecccCCCceecCceeEEecCHHHHHHHHhcccc
Confidence 332 113344477888888888877632211 01111
Q ss_pred ------------------------------------ccccccccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy37 144 ------------------------------------GSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSL 187 (279)
Q Consensus 144 ------------------------------------g~~~~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l 187 (279)
|.......+|++.+......|..+.|+++||+||.+|++||++|
T Consensus 194 nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aL 273 (607)
T KOG0240|consen 194 NRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINAL 273 (607)
T ss_pred cchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHH
Confidence 11111222677777777788999999999999999999999999
Q ss_pred HhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCcc
Q psy37 188 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPN 259 (279)
Q Consensus 188 ~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~ 259 (279)
++ ++..|||||||||||+|+|+||||++|.+|+|++|+.-+-.||.+||+|+.|++.|+|.+.+|..-.
T Consensus 274 a~---g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~ 342 (607)
T KOG0240|consen 274 AE---GPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELT 342 (607)
T ss_pred hc---CCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhh
Confidence 97 6689999999999999999999999999999999999999999999999999999999999996443
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.6e-53 Score=376.87 Aligned_cols=210 Identities=30% Similarity=0.474 Sum_probs=175.7
Q ss_pred ccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceeccccccc
Q psy37 16 DHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSF 95 (279)
Q Consensus 16 d~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~ 95 (279)
....|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..++|++|+++++| |..+..
T Consensus 53 ~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~l-F~~~~~-- 129 (345)
T cd01368 53 KETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVI-FNSIGG-- 129 (345)
T ss_pred CceEeecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHH-HHHHHh--
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999 887643
Q ss_pred CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc-----eEE----------Ee-----------------
Q psy37 96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK-----TFT----------MM----------------- 143 (279)
Q Consensus 96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~-----~~~----------~~----------------- 143 (279)
+.+..+++|+|+++|+|||.+.... ... +.
T Consensus 130 ------------------~~v~~S~~EIyne~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l 191 (345)
T cd01368 130 ------------------YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVF 191 (345)
T ss_pred ------------------eeEEEEEEEEeCCEeEeCCCCccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHH
Confidence 4455599999999999999754321 111 11
Q ss_pred --cccccc-----------------------------------------------ccCccccchhhhhhhhhhhhhhHHH
Q psy37 144 --GSKARN-----------------------------------------------FGEGKDCVCSIVEAGDRLKEGAHIN 174 (279)
Q Consensus 144 --g~~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~e~~~in 174 (279)
|...|. ..+|+|+.......|.+++|+..||
T Consensus 192 ~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN 271 (345)
T cd01368 192 KRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNIN 271 (345)
T ss_pred HHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhh
Confidence 111110 1134444444446678899999999
Q ss_pred HHHHHHHHHHHHHHhhhCC--CCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhc
Q psy37 175 KSLVTLGSVISSLAELSTK--KSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 246 (279)
Q Consensus 175 ~Sl~~L~~~i~~l~~~~~~--~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~ 246 (279)
+||++|++||.+|++.+.. +..|||||+||||+||+|+|+|+++|+||+||+|+..+++||++||+||++++
T Consensus 272 ~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 272 TSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999975432 58899999999999999999999999999999999999999999999999985
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=4.8e-53 Score=375.95 Aligned_cols=220 Identities=42% Similarity=0.611 Sum_probs=181.1
Q ss_pred cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC-----------CCCCCCCcccc
Q psy37 17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA-----------TTDNSPDAHKD 85 (279)
Q Consensus 17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~-----------~~G~~~~~~~~ 85 (279)
...|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+.. .+|++|+++++
T Consensus 47 ~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~ 126 (352)
T cd01364 47 TKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQ 126 (352)
T ss_pred ceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHH
Confidence 3468999999999999999999999999999999999999999999999999999853 48999999999
Q ss_pred ceecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCC--CceE------------EEec-------
Q psy37 86 FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS--GKTF------------TMMG------- 144 (279)
Q Consensus 86 l~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~--~~~~------------~~~g------- 144 (279)
| |...... . ..+.+..+++|+|++.++||+.+.. .+.. .+.|
T Consensus 127 L-f~~~~~~-~---------------~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~ 189 (352)
T cd01364 127 L-FEKLESQ-N---------------TEYSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVN 189 (352)
T ss_pred H-HHHHHhc-c---------------ceeEEEEEEEEeeCCeeeeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeC
Confidence 9 8877542 1 1144555999999999999998653 1111 1111
Q ss_pred ------------cccc--------ccc----------------------------------Cccccchhhhhhhhhhhhh
Q psy37 145 ------------SKAR--------NFG----------------------------------EGKDCVCSIVEAGDRLKEG 170 (279)
Q Consensus 145 ------------~~~~--------~~~----------------------------------~~~~~~~~~~~~~~~~~e~ 170 (279)
...| ..+ +|+|+.......+.+++|+
T Consensus 190 s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~ 269 (352)
T cd01364 190 NANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREA 269 (352)
T ss_pred CHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHH
Confidence 1111 111 2333333333455688999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccC
Q psy37 171 AHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIIN 250 (279)
Q Consensus 171 ~~in~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~ 250 (279)
..||+||++|++||.+|+. +..+||||+|+||+||+|+|||+++++||+||+|...+++||++||+||+++++|+|
T Consensus 270 ~~iN~SL~~L~~vi~al~~----~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n 345 (352)
T cd01364 270 GNINQSLLTLGRVINALVE----KSPHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKN 345 (352)
T ss_pred hhhhHHHHHHHHHHHHHHc----CCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999985 668999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCC
Q psy37 251 KPTVNED 257 (279)
Q Consensus 251 ~~~~~~~ 257 (279)
.|.+|++
T Consensus 346 ~P~~n~~ 352 (352)
T cd01364 346 KPEVNQK 352 (352)
T ss_pred ccccCCC
Confidence 9999864
No 13
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=6.9e-52 Score=363.47 Aligned_cols=208 Identities=35% Similarity=0.454 Sum_probs=173.5
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP 97 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~ 97 (279)
..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..++|++|+++++| |.......
T Consensus 47 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~L-f~~~~~~~-- 123 (319)
T cd01376 47 KKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDL-LRMGRKQA-- 123 (319)
T ss_pred cEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHH-HHHHhhcc--
Confidence 468999999999999999999999999999999999999999999999999999999999999999999 87654221
Q ss_pred CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceE---------EEeccccc--------------------
Q psy37 98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF---------TMMGSKAR-------------------- 148 (279)
Q Consensus 98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~---------~~~g~~~~-------------------- 148 (279)
..+.+..+++|+|++.++||+.+...... .+.|....
T Consensus 124 --------------~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~ 189 (319)
T cd01376 124 --------------WTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRT 189 (319)
T ss_pred --------------ccceEEEEEEEEECCEeeEccCCCCCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhc
Confidence 11445559999999999999976422111 11111110
Q ss_pred ------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhC
Q psy37 149 ------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELST 192 (279)
Q Consensus 149 ------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~~~~~ 192 (279)
...+|+|+.......|.+++|+..||+||.+|++||.+|+.
T Consensus 190 ~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~--- 266 (319)
T cd01376 190 VAATKLNDNSSRSHAVLRIKVTQPASNIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNK--- 266 (319)
T ss_pred cccCcCCCccCCCeEEEEEEEEEECCCceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhc---
Confidence 11134444444445678899999999999999999999984
Q ss_pred CCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhc
Q psy37 193 KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 246 (279)
Q Consensus 193 ~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~ 246 (279)
+..|||||+|+||+||+|+|+|+++|+||+||+|...+++||++||+||+|+|
T Consensus 267 -~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 267 -GLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred -CCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 67899999999999999999999999999999999999999999999999986
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.9e-51 Score=362.76 Aligned_cols=212 Identities=46% Similarity=0.633 Sum_probs=174.8
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC---CCCCCCCccccceecccccc
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA---TTDNSPDAHKDFTFDHSYWS 94 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~---~~G~~~~~~~~l~f~~~~~~ 94 (279)
..|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+.. .+|++|+++++| |......
T Consensus 48 ~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~L-f~~~~~~ 126 (333)
T cd01371 48 KVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHI-FGHIAKA 126 (333)
T ss_pred ceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHH-HHHHhhc
Confidence 358999999999999999999999999999999999999999999999999999987 899999999999 9876543
Q ss_pred cCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEe----------ccc------------------
Q psy37 95 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM----------GSK------------------ 146 (279)
Q Consensus 95 ~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~----------g~~------------------ 146 (279)
.+. .+.+..+++|+|++.++||+.+...+...+. |..
T Consensus 127 ~~~---------------~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~ 191 (333)
T cd01371 127 ENV---------------QFLVRVSYLEIYNEEVRDLLGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGN 191 (333)
T ss_pred cCc---------------cEEEEEEEEEeeCCeeeeCCCCCCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHH
Confidence 221 1445559999999999999986653222111 100
Q ss_pred -cc--------ccc----------------------------------CccccchhhhhhhhhhhhhhHHHHHHHHHHHH
Q psy37 147 -AR--------NFG----------------------------------EGKDCVCSIVEAGDRLKEGAHINKSLVTLGSV 183 (279)
Q Consensus 147 -~~--------~~~----------------------------------~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~ 183 (279)
.| ..+ +|+|+.......+.+++|+..||+||.+|++|
T Consensus 192 ~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~v 271 (333)
T cd01371 192 KNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNV 271 (333)
T ss_pred hhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHH
Confidence 00 001 23333333334567889999999999999999
Q ss_pred HHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37 184 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248 (279)
Q Consensus 184 i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i 248 (279)
|.+|++ ....|||||+||||++|+++|+|+++++||+||+|...+++||++||+||+++|+|
T Consensus 272 i~al~~---~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 272 ISALVD---GKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHh---CCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999985 44469999999999999999999999999999999999999999999999999976
No 15
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.3e-51 Score=361.98 Aligned_cols=209 Identities=35% Similarity=0.481 Sum_probs=171.2
Q ss_pred cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccC
Q psy37 17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFD 96 (279)
Q Consensus 17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~ 96 (279)
...|.||+||+++++|++||+.+++|+|+.+++|+|+||||||||||||||||+|+..++|++|+++++| |.......
T Consensus 50 ~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~l-f~~~~~~~- 127 (322)
T cd01367 50 KHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDI-FRLLAQPN- 127 (322)
T ss_pred CceEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHH-HHHHhccc-
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999 98875432
Q ss_pred CCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce--------EEEecc-------------------cccc
Q psy37 97 PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT--------FTMMGS-------------------KARN 149 (279)
Q Consensus 97 ~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~--------~~~~g~-------------------~~~~ 149 (279)
..+.+..+++|+|++.++||+.+...-. ..+.|. ..|.
T Consensus 128 ---------------~~~~v~~S~~EIy~e~v~DLL~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~ 192 (322)
T cd01367 128 ---------------DDLGVTVSFFEIYGGKLFDLLNDRKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRT 192 (322)
T ss_pred ---------------cccEEEEEEEeeecCchhhhccCccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccc
Confidence 1144555999999999999986522111 111111 1110
Q ss_pred --------cc----------------------------Cccccchhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhhhC
Q psy37 150 --------FG----------------------------EGKDCVCSIV-EAGDRLKEGAHINKSLVTLGSVISSLAELST 192 (279)
Q Consensus 150 --------~~----------------------------~~~~~~~~~~-~~~~~~~e~~~in~Sl~~L~~~i~~l~~~~~ 192 (279)
.+ +|+|...... ..+.+++|+..||+||.+|++||.+|++
T Consensus 193 ~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~--- 269 (322)
T cd01367 193 TGSTGANDQSSRSHAILQIILKNKKLNKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALAS--- 269 (322)
T ss_pred cccCcCCCCcccceEEEEEEEEEecCCeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhc---
Confidence 11 2333322221 2467789999999999999999999995
Q ss_pred CCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhc
Q psy37 193 KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 246 (279)
Q Consensus 193 ~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~ 246 (279)
+..|||||+||||++|+|+|+|+++++||+||+|...+++||++||+||+|+|
T Consensus 270 -~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 270 -NKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred -CCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 56899999999999999999999999999999999999999999999999986
No 16
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=2.4e-50 Score=355.63 Aligned_cols=208 Identities=40% Similarity=0.548 Sum_probs=170.1
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC---CCCCCCCCccccceeccccccc
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK---ATTDNSPDAHKDFTFDHSYWSF 95 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~---~~~G~~~~~~~~l~f~~~~~~~ 95 (279)
.|.||+||++ ++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+. .++|++|+++++| |..+....
T Consensus 49 ~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~l-f~~~~~~~ 126 (334)
T cd01375 49 SFKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQV-FREVAMRA 126 (334)
T ss_pred EEEcCcccCC-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHH-HHHHHhcc
Confidence 4899999999 99999999999999999999999999999999999999999976 4689999999999 98765322
Q ss_pred CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC-----ceE----------EEecccc-------------
Q psy37 96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG-----KTF----------TMMGSKA------------- 147 (279)
Q Consensus 96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~-----~~~----------~~~g~~~------------- 147 (279)
. ..+.+..+++|+|++.++||+.+... ... .+.|...
T Consensus 127 ~---------------~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~ 191 (334)
T cd01375 127 T---------------KTYTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLL 191 (334)
T ss_pred C---------------cceEEEEEEEEEECCEeecCCCCCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHH
Confidence 1 12455669999999999999987731 111 1111110
Q ss_pred ------c--------ccc---------------------------------CccccchhhhhhhhhhhhhhHHHHHHHHH
Q psy37 148 ------R--------NFG---------------------------------EGKDCVCSIVEAGDRLKEGAHINKSLVTL 180 (279)
Q Consensus 148 ------~--------~~~---------------------------------~~~~~~~~~~~~~~~~~e~~~in~Sl~~L 180 (279)
| ..+ +|+|+.......+..++|+..||+||.+|
T Consensus 192 ~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L 271 (334)
T cd01375 192 FLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFL 271 (334)
T ss_pred HHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHH
Confidence 0 111 23333333334567789999999999999
Q ss_pred HHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhc
Q psy37 181 GSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 246 (279)
Q Consensus 181 ~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~ 246 (279)
++||.+|++ ....|||||+||||++|+|+|||+|+|+||+||+|...+++||++||+||+|++
T Consensus 272 ~~vi~~l~~---~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 272 EQVINALSE---KARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred HHHHHHHHh---CCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999985 234899999999999999999999999999999999999999999999999984
No 17
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.4e-50 Score=357.54 Aligned_cols=217 Identities=43% Similarity=0.581 Sum_probs=176.4
Q ss_pred cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC------CCCCCCCCccccceecc
Q psy37 17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK------ATTDNSPDAHKDFTFDH 90 (279)
Q Consensus 17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~------~~~G~~~~~~~~l~f~~ 90 (279)
...|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+. .++|++|+++++| |+.
T Consensus 39 ~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~L-F~~ 117 (341)
T cd01372 39 DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHI-FKK 117 (341)
T ss_pred CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHH-HHH
Confidence 456899999999999999999999999999999999999999999999999999974 5699999999999 988
Q ss_pred cccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCC--CceEEEe----------cc-------------
Q psy37 91 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS--GKTFTMM----------GS------------- 145 (279)
Q Consensus 91 ~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~--~~~~~~~----------g~------------- 145 (279)
...... ...+.+..+++|+|++.++||+.+.. .....+. |.
T Consensus 118 ~~~~~~--------------~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~ 183 (341)
T cd01372 118 IDEKKD--------------EPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMS 183 (341)
T ss_pred HHhccc--------------cceEEEEEEEEEeECCeeecCCCCcccCCCCceEEECCCCCEecCCCEEEEECCHHHHHH
Confidence 764322 11145555999999999999997653 1111110 00
Q ss_pred ------ccc-------------------------------------------------cccCccccchhhhhhhhhhhhh
Q psy37 146 ------KAR-------------------------------------------------NFGEGKDCVCSIVEAGDRLKEG 170 (279)
Q Consensus 146 ------~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~e~ 170 (279)
..| ...+|+|+.......+.+++|+
T Consensus 184 ~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~ 263 (341)
T cd01372 184 CLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEG 263 (341)
T ss_pred HHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHH
Confidence 000 0113334333334567888999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhcccc
Q psy37 171 AHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNII 249 (279)
Q Consensus 171 ~~in~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~ 249 (279)
..||+||.+|++||.+|+..+. +..|||||+|+||+||+++|||+++++||+||+|...+++||++||+||+++|+||
T Consensus 264 ~~in~sl~aL~~vi~al~~~~~-~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 264 ISINSGLLALGNVISALGDESK-KGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHhHHHHHHHHHHHHHHhcCC-CCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999986332 34799999999999999999999999999999999999999999999999999986
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=2.5e-50 Score=354.32 Aligned_cols=213 Identities=39% Similarity=0.549 Sum_probs=173.5
Q ss_pred cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccC
Q psy37 17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFD 96 (279)
Q Consensus 17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~ 96 (279)
...|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+..++|++|+++++| |........
T Consensus 39 ~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~l-f~~~~~~~~ 117 (321)
T cd01374 39 GQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDI-FQRIQDTPD 117 (321)
T ss_pred CeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCCCCCchHHHHHHHH-HHHHhcccC
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999 987753321
Q ss_pred CCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce---------EEEecc-------------------ccc
Q psy37 97 PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT---------FTMMGS-------------------KAR 148 (279)
Q Consensus 97 ~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~---------~~~~g~-------------------~~~ 148 (279)
. .+.+..+++|+|++.++||+.+..... ..+.|. ..|
T Consensus 118 ~---------------~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R 182 (321)
T cd01374 118 R---------------EFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNR 182 (321)
T ss_pred c---------------eEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhcc
Confidence 1 134555999999999999997652211 111111 111
Q ss_pred c--------cc----------------------------------CccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy37 149 N--------FG----------------------------------EGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISS 186 (279)
Q Consensus 149 ~--------~~----------------------------------~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~ 186 (279)
. .+ +|+|+..... .+.+++|+..||+||.+|++||.+
T Consensus 183 ~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~a 261 (321)
T cd01374 183 HVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISK 261 (321)
T ss_pred ccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHH
Confidence 1 11 1222222222 477888999999999999999999
Q ss_pred HHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37 187 LAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248 (279)
Q Consensus 187 l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i 248 (279)
|++.+ +..|||||+|+||+||+++|+|+++++||+||+|...+++||++||+||+++++|
T Consensus 262 l~~~~--~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 262 LSEGK--NSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred HHhcC--CCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 99621 1589999999999999999999999999999999999999999999999999875
No 19
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=2.2e-50 Score=355.39 Aligned_cols=214 Identities=41% Similarity=0.562 Sum_probs=174.8
Q ss_pred cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC---CCCCCCCccccceeccccc
Q psy37 17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA---TTDNSPDAHKDFTFDHSYW 93 (279)
Q Consensus 17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~---~~G~~~~~~~~l~f~~~~~ 93 (279)
...|.||+||+++++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+.. .+|++|+++++| |..+..
T Consensus 42 ~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~L-f~~~~~ 120 (325)
T cd01369 42 GKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDI-FEHISS 120 (325)
T ss_pred ceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHH-HHHHhh
Confidence 3468999999999999999999999999999999999999999999999999999988 899999999999 987653
Q ss_pred ccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceE---------EEeccc------------------
Q psy37 94 SFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF---------TMMGSK------------------ 146 (279)
Q Consensus 94 ~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~---------~~~g~~------------------ 146 (279)
... ...+.+..+++|+|++.++||+.+...... .+.|..
T Consensus 121 ~~~--------------~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~ 186 (325)
T cd01369 121 MDE--------------NLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGK 186 (325)
T ss_pred ccC--------------CceEEEEEEEEEEECCChhhcccCccCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHH
Confidence 311 111445559999999999999875422111 111110
Q ss_pred -cc--------c-------------------------------ccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy37 147 -AR--------N-------------------------------FGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISS 186 (279)
Q Consensus 147 -~~--------~-------------------------------~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~ 186 (279)
.| . ..+|+|+.......+.+++|+..||+||.+|++||.+
T Consensus 187 ~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~a 266 (325)
T cd01369 187 SNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINA 266 (325)
T ss_pred hhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHH
Confidence 00 0 1134444433445677889999999999999999999
Q ss_pred HHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37 187 LAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248 (279)
Q Consensus 187 l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i 248 (279)
|++ ....|||||+|+||+||+++|+|+++++||+||+|+..+++||++||+||+++|+|
T Consensus 267 L~~---~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 267 LTD---GKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHc---CCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 985 33489999999999999999999999999999999999999999999999999976
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=3.6e-49 Score=348.33 Aligned_cols=215 Identities=41% Similarity=0.620 Sum_probs=176.3
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP 97 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~ 97 (279)
..|.||+||+++++|++||+.+ .|+|+++++|+|+|||+||+|||||||||+|+..++|++|+++++| |.......+.
T Consensus 45 ~~f~fD~vf~~~~~q~~v~~~v-~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~l-f~~~~~~~~~ 122 (329)
T cd01366 45 KSFSFDRVFDPDASQEDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQL-FNTAEELKEK 122 (329)
T ss_pred eEEecCEEECCCCCHHHHHHHH-HHHHHHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHH-HHHHHhhhcc
Confidence 3589999999999999999985 7999999999999999999999999999999999999999999999 9876533221
Q ss_pred CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCC--CceEE----------Eec-------------------cc
Q psy37 98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS--GKTFT----------MMG-------------------SK 146 (279)
Q Consensus 98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~--~~~~~----------~~g-------------------~~ 146 (279)
+..+.+..+++|+|++.++||+.... ..... +.| ..
T Consensus 123 -------------~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~ 189 (329)
T cd01366 123 -------------GWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSK 189 (329)
T ss_pred -------------CceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHh
Confidence 11245566999999999999998752 11111 111 11
Q ss_pred cccc--------c-------------------------------CccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy37 147 ARNF--------G-------------------------------EGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSL 187 (279)
Q Consensus 147 ~~~~--------~-------------------------------~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l 187 (279)
.|.. + +|+|........+.+++|+..||+||.+|++||.+|
T Consensus 190 ~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l 269 (329)
T cd01366 190 NRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISAL 269 (329)
T ss_pred hcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHH
Confidence 1100 1 233333333346778899999999999999999999
Q ss_pred HhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCc
Q psy37 188 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINK 251 (279)
Q Consensus 188 ~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~ 251 (279)
+. +..|||||+|+||++|+++|+|+++++||+||||...+++||++||+||+++++|++.
T Consensus 270 ~~----~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 270 RS----KDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred hc----CCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 84 6899999999999999999999999999999999999999999999999999999874
No 21
>KOG0239|consensus
Probab=100.00 E-value=8e-50 Score=373.37 Aligned_cols=237 Identities=37% Similarity=0.502 Sum_probs=191.8
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC-CCCCCCCCCCccccceecccccccCC
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG-SKATTDNSPDAHKDFTFDHSYWSFDP 97 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G-~~~~~G~~~~~~~~l~f~~~~~~~~~ 97 (279)
.|.||+||+|.++|++||.++. |+|+.+++|||+||||||||||||||||.| +++++|++|++++.+ |..+.....
T Consensus 361 ~f~fdkVf~p~~sQ~~VF~e~~-~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~l-F~~~~~~~~- 437 (670)
T KOG0239|consen 361 SFKFDKVFGPLASQDDVFEEVS-PLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKL-FRTITSLKS- 437 (670)
T ss_pred cceeeeecCCcccHHHHHHHHH-HHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHH-HHHHHhhcc-
Confidence 4899999999999999999997 999999999999999999999999999999 689999999999999 987753322
Q ss_pred CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCC-CceEEEe-----------------------------cccc
Q psy37 98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS-GKTFTMM-----------------------------GSKA 147 (279)
Q Consensus 98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~-~~~~~~~-----------------------------g~~~ 147 (279)
. +.+++-.+++|+||+.++||+..+. ...+.+. |...
T Consensus 438 g-------------~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~n 504 (670)
T KOG0239|consen 438 G-------------WKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSN 504 (670)
T ss_pred C-------------ceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhcc
Confidence 1 1155556888888888888887653 1111111 1111
Q ss_pred c---------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy37 148 R---------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLA 188 (279)
Q Consensus 148 ~---------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~ 188 (279)
| ...+|+|++..-...|+|++|+..||+||++|+.||.+|+
T Consensus 505 Rsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~ 584 (670)
T KOG0239|consen 505 RSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALA 584 (670)
T ss_pred ccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHh
Confidence 1 1125667766666889999999999999999999999999
Q ss_pred hhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHHHHHHHHH
Q psy37 189 ELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHD 268 (279)
Q Consensus 189 ~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~~~~~l~~ 268 (279)
++..|||||+||||+||+++|||+++|+|+++|||...++.||+.+|+||++++.+...+.......... ..+..
T Consensus 585 ----~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~~~-~~~~~ 659 (670)
T KOG0239|consen 585 ----SKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTSDD-VSLKR 659 (670)
T ss_pred ----hcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccccccccch-hhhhh
Confidence 4889999999999999999999999999999999999999999999999999999999887654333332 23444
Q ss_pred HHHHHHHH
Q psy37 269 EITKLKAM 276 (279)
Q Consensus 269 ~~~~Lk~~ 276 (279)
....++..
T Consensus 660 ~~~~~~~~ 667 (670)
T KOG0239|consen 660 FGQLEKLS 667 (670)
T ss_pred hhhhhhhh
Confidence 44444443
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.6e-48 Score=345.28 Aligned_cols=221 Identities=47% Similarity=0.614 Sum_probs=181.7
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP 97 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~ 97 (279)
..|.||+||+++++|++||+.++.|+|+.+++|+|+|||+||++||||||||+|+.+++|++|+++++| |.......+
T Consensus 46 ~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~L-f~~~~~~~~- 123 (335)
T smart00129 46 KKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDL-FEKIDKLEE- 123 (335)
T ss_pred eEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHH-HHHhhhccc-
Confidence 458999999999999999999999999999999999999999999999999999999999999999999 987753321
Q ss_pred CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEE---------Eecccc-------------------cc
Q psy37 98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT---------MMGSKA-------------------RN 149 (279)
Q Consensus 98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~---------~~g~~~-------------------~~ 149 (279)
...+.+..+++|+|++.++||+.+....... +.+... |.
T Consensus 124 -------------~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~ 190 (335)
T smart00129 124 -------------GWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRT 190 (335)
T ss_pred -------------CceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccc
Confidence 1124455599999999999999755432111 111100 00
Q ss_pred --------cc---------------------------------CccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy37 150 --------FG---------------------------------EGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLA 188 (279)
Q Consensus 150 --------~~---------------------------------~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~ 188 (279)
.+ +|+|+.......+.+++|+..||+||.+|++|+.+|+
T Consensus 191 ~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~ 270 (335)
T smart00129 191 VAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALA 270 (335)
T ss_pred cccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHH
Confidence 00 2222222222456788999999999999999999998
Q ss_pred hhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccccc
Q psy37 189 ELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 255 (279)
Q Consensus 189 ~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~ 255 (279)
+. .+..++|||+|+||+||+++|+|+++++||+||+|...+++||++||+||+++++|+++|++|
T Consensus 271 ~~--~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 271 DG--QKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred hc--CCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 52 357799999999999999999999999999999999999999999999999999999999875
No 23
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=4e-49 Score=349.38 Aligned_cols=216 Identities=42% Similarity=0.623 Sum_probs=172.6
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCC--CCCCCCCCCccccceeccccccc
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS--KATTDNSPDAHKDFTFDHSYWSF 95 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~--~~~~G~~~~~~~~l~f~~~~~~~ 95 (279)
..|.||+||+++++|++||+.++.|+|+.+++|+|+|||+||+|||||||||+|+ ..++|++|+++++| |.......
T Consensus 41 ~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~l-f~~~~~~~ 119 (335)
T PF00225_consen 41 KSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDL-FSQIEERK 119 (335)
T ss_dssp EEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHH-HHHHHHHT
T ss_pred eEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEeeccccccccccccccccccccchhhhHHHHH-hhhhcccc
Confidence 3578999999999999999999999999999999999999999999999999999 89999999999999 98876433
Q ss_pred CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCC---CceEEEe-----------cccccccc----------
Q psy37 96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS---GKTFTMM-----------GSKARNFG---------- 151 (279)
Q Consensus 96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~---~~~~~~~-----------g~~~~~~~---------- 151 (279)
... ...+.+..+++|+|++.++||+.+.. .....+. +.....+.
T Consensus 120 ~~~------------~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~ 187 (335)
T PF00225_consen 120 EKS------------GYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLK 187 (335)
T ss_dssp TTS------------TEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHH
T ss_pred ccc------------cccccccccchhhhhhhhhhhcCccccccccccceeeccccccceeecccccccccccccccccc
Confidence 221 11245556999999999999999872 2222111 11111100
Q ss_pred -----------------Cccccchh-----------------------------------hhh-hhhhhhhhhHHHHHHH
Q psy37 152 -----------------EGKDCVCS-----------------------------------IVE-AGDRLKEGAHINKSLV 178 (279)
Q Consensus 152 -----------------~~~~~~~~-----------------------------------~~~-~~~~~~e~~~in~Sl~ 178 (279)
..+|++.. ... .+.+++|+..||+||.
T Consensus 188 ~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~ 267 (335)
T PF00225_consen 188 KGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLS 267 (335)
T ss_dssp HHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHH
T ss_pred chhhccccccccccccccccccccccccccccccccccccceeecceeeeecccccccccccccccccccccceecchhh
Confidence 11222111 111 2566899999999999
Q ss_pred HHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37 179 TLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248 (279)
Q Consensus 179 ~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i 248 (279)
+|++||.+|+.. ....+||||+|+||+||+|+|+|+|+++||+||+|...++++|++||+||+++|+|
T Consensus 268 ~L~~vi~~L~~~--~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 268 ALGNVIRALAQG--SKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHCT--TSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred hhhhhHhhhhcc--ccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999952 24899999999999999999999999999999999999999999999999999986
No 24
>KOG0244|consensus
Probab=100.00 E-value=1.2e-46 Score=350.37 Aligned_cols=256 Identities=40% Similarity=0.525 Sum_probs=216.2
Q ss_pred CCCCCcceeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCC----CCCCCCCC
Q psy37 5 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS----KATTDNSP 80 (279)
Q Consensus 5 ~~~~~~~~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~----~~~~G~~~ 80 (279)
..|+..-...-++.+|.||.||+...+|.++|+.++.|+++.++.|||++|+|||||||||||||.+. .+..|++|
T Consensus 19 ~~~~~pqv~ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~~~~~~~~~Gvip 98 (913)
T KOG0244|consen 19 VSPRTPQVAIGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTNDAPAQDTVGVIP 98 (913)
T ss_pred cCCCCCceeecCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCceeecccccccccccCCcCc
Confidence 35566666677888899999999999999999999999999999999999999999999999999886 34469999
Q ss_pred CccccceecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc----------eEEEeccccc--
Q psy37 81 DAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK----------TFTMMGSKAR-- 148 (279)
Q Consensus 81 ~~~~~l~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~----------~~~~~g~~~~-- 148 (279)
+++..+ |..+....... +.+.++++++|++.|+|++.+...+ ..++.|....
T Consensus 99 r~v~~~-f~~i~~~~~~~---------------f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e~~g~it~~glte~tv 162 (913)
T KOG0244|consen 99 RAVSTL-FTRIGKTESFV---------------FRITVSFVELYNEEVLDLLKPSRLKANIKLREPKGEITIRGLTEKTV 162 (913)
T ss_pred chHHHH-HHHHHhhhccc---------------eeeeeeeeeccchhhhhhcChhhhhhceeccccCCceEEEeehHHHH
Confidence 999999 98886443311 4444488888998888888722111 1222211111
Q ss_pred ---------------------------------------------------------cccCccccchhhhhhhhhhhhhh
Q psy37 149 ---------------------------------------------------------NFGEGKDCVCSIVEAGDRLKEGA 171 (279)
Q Consensus 149 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~ 171 (279)
...+|++++.+....|.+++|+.
T Consensus 163 ~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgI 242 (913)
T KOG0244|consen 163 RMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGI 242 (913)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccccccchhhhhhcc
Confidence 11267788888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCc
Q psy37 172 HINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINK 251 (279)
Q Consensus 172 ~in~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~ 251 (279)
+||.+|++|++||.+|.+.+ +..|||||+|+||+||+++||||+.|+||+||||...+.+||++||+||.|+++|+|.
T Consensus 243 nIN~gLL~LgnVIsaLg~~k--k~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk 320 (913)
T KOG0244|consen 243 NINGGLLALGNVISALGEAK--KGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNK 320 (913)
T ss_pred CcchHHHHHHHHHHHHHhhh--cCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhccc
Confidence 99999999999999998633 3669999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccHHHHHHHHHHHHHHHHHhc
Q psy37 252 PTVNEDPNTRIIRELHDEITKLKAMLT 278 (279)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~Lk~~l~ 278 (279)
|++|.++....+..++.++..|+.+|-
T Consensus 321 ~vvN~d~~~~~~~~lK~ql~~l~~ell 347 (913)
T KOG0244|consen 321 PVVNQDPKSFEMLKLKAQLEPLQVELL 347 (913)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998874
No 25
>KOG0246|consensus
Probab=100.00 E-value=1e-46 Score=333.22 Aligned_cols=219 Identities=34% Similarity=0.464 Sum_probs=175.2
Q ss_pred ccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC------CCCCCCCCccccceec
Q psy37 16 DHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK------ATTDNSPDAHKDFTFD 89 (279)
Q Consensus 16 d~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~------~~~G~~~~~~~~l~f~ 89 (279)
+...|.||++|++.++++.||+.+++|+|..+++|.-+|+||||||||||||||-|+. ...||-..+.+++ |.
T Consensus 256 En~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dv-f~ 334 (676)
T KOG0246|consen 256 ENQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDV-FR 334 (676)
T ss_pred hhceEEEeeecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHH-HH
Confidence 3446899999999999999999999999999999999999999999999999998863 2358888888888 66
Q ss_pred ccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC--------ceEEEecccccc------------
Q psy37 90 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG--------KTFTMMGSKARN------------ 149 (279)
Q Consensus 90 ~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~--------~~~~~~g~~~~~------------ 149 (279)
.... ..|..+...++++|+|||..++||||..... ....+.|.....
T Consensus 335 ~L~~-------------p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe 401 (676)
T KOG0246|consen 335 LLRQ-------------PTYRKLDLKVYVTFFEIYGGKVYDLLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIE 401 (676)
T ss_pred Hhcc-------------cchhhcceEEEEEEEEEeCcchhhhhccccceEEeecCCceEEEeeceeeeccCHHHHHHHHH
Confidence 5431 2345555777889999999999999986211 111222222222
Q ss_pred ---------------ccCccccchhhh-----------------------------hhhhhhhhhhHHHHHHHHHHHHHH
Q psy37 150 ---------------FGEGKDCVCSIV-----------------------------EAGDRLKEGAHINKSLVTLGSVIS 185 (279)
Q Consensus 150 ---------------~~~~~~~~~~~~-----------------------------~~~~~~~e~~~in~Sl~~L~~~i~ 185 (279)
.++.+|.+..++ ...+...|++.||+||++|..||+
T Consensus 402 ~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIR 481 (676)
T KOG0246|consen 402 KGNSCRTSGQTSANSNSSRSHAVFQIILRKHGEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIR 481 (676)
T ss_pred hcccccccCcccCcccccccceeEeeeeecCCcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 223444444433 223455699999999999999999
Q ss_pred HHHhhhCCCCCcccccchhHHHHhHhhcCC-CceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcc
Q psy37 186 SLAELSTKKSTFIPYRDSVLTWLLKDSLGG-NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKP 252 (279)
Q Consensus 186 ~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g-~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~ 252 (279)
+|. ..+.|+|||.||||++|+|+|=| +++|+||+||||....+++||+|||||.|+++.....
T Consensus 482 aLg----~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 482 ALG----RNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred Hhc----CCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 997 58899999999999999999866 9999999999999999999999999999999976544
No 26
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=2.2e-46 Score=330.93 Aligned_cols=213 Identities=44% Similarity=0.608 Sum_probs=172.1
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP 97 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~ 97 (279)
..|.||+||+++++|++||+.++.|+|+++++|+|+|||+||++||||||||+|+..++|++|+++++| |........
T Consensus 45 ~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~L-f~~~~~~~~- 122 (328)
T cd00106 45 KSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDL-FNLIDERKE- 122 (328)
T ss_pred eEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHH-HHHHhhccc-
Confidence 568999999999999999999999999999999999999999999999999999999999999999999 987754332
Q ss_pred CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccC--CCceEE---------Eeccc-------------------c
Q psy37 98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTG--SGKTFT---------MMGSK-------------------A 147 (279)
Q Consensus 98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~--~~~~~~---------~~g~~-------------------~ 147 (279)
....+.+..+++|+|++.++||+... ...... +.|.. .
T Consensus 123 ------------~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~ 190 (328)
T cd00106 123 ------------KNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKN 190 (328)
T ss_pred ------------cCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhh
Confidence 01114455599999999999999875 221111 11100 0
Q ss_pred cc--------cc---------------------------------CccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy37 148 RN--------FG---------------------------------EGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISS 186 (279)
Q Consensus 148 ~~--------~~---------------------------------~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~ 186 (279)
|. .+ +|+++.......+.++.|+..||+||.+|++|+.+
T Consensus 191 R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~ 270 (328)
T cd00106 191 RTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISA 270 (328)
T ss_pred cCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHH
Confidence 00 00 12222222224566788999999999999999999
Q ss_pred HHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhc
Q psy37 187 LAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 246 (279)
Q Consensus 187 l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~ 246 (279)
|+..+ +..+||||+||||+||+|+|+|+++++||+||+|...+++||++||+||+++|
T Consensus 271 l~~~~--~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 271 LSSGQ--KKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred HHhcC--CCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99521 14899999999999999999999999999999999999999999999999985
No 27
>KOG0247|consensus
Probab=100.00 E-value=3.3e-45 Score=332.05 Aligned_cols=236 Identities=29% Similarity=0.386 Sum_probs=188.6
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCCC
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPS 98 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~~ 98 (279)
.|+|.+||+++++|.+||+.++.|+|.+++.|.|..+|+||-|||||||||+|+...+||+||+++.| |..+.......
T Consensus 82 ~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~i-F~siq~~~~~k 160 (809)
T KOG0247|consen 82 KFSFTKVFGPSVTQADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVI-FNSIQGRQAKK 160 (809)
T ss_pred EeeeeeecCCCccHHHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHH-HHHhhceeccC
Confidence 36788888999999999999999999999999999999999999999999999999999999999998 76554311000
Q ss_pred ------------------------------Cccccc---------HH-----HH------HhhhchhhHhhhhhccceee
Q psy37 99 ------------------------------SPQFAS---------QE-----QV------FNDLGMDVVDAAFEGYNACV 128 (279)
Q Consensus 99 ------------------------------~~~~~s---------~~-----ei------~~~~~~~l~~s~~e~~~~~v 128 (279)
.....+ +. .. -++..+.||++|+||||+.|
T Consensus 161 ~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~i 240 (809)
T KOG0247|consen 161 PVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYI 240 (809)
T ss_pred ceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHH
Confidence 000000 00 01 14455778889999999999
Q ss_pred eeccccCCCce---------------EEEeccc-------------------cc--------------------------
Q psy37 129 FAYGQTGSGKT---------------FTMMGSK-------------------AR-------------------------- 148 (279)
Q Consensus 129 ~dl~~~~~~~~---------------~~~~g~~-------------------~~-------------------------- 148 (279)
|||+...+... ..+.|.. .+
T Consensus 241 YDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~ 320 (809)
T KOG0247|consen 241 YDLLEDASFQGKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAP 320 (809)
T ss_pred HHhhccccccchhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecc
Confidence 99996432110 0111110 00
Q ss_pred ---------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh-CCCCCcccccchhHHHHhHhh
Q psy37 149 ---------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELS-TKKSTFIPYRDSVLTWLLKDS 212 (279)
Q Consensus 149 ---------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~~~~-~~~~~~ipyr~SkLT~lL~~~ 212 (279)
...+|+|+..+..+.|.|++|+++||.||++|+.||.+|.+++ .+.+.+|||||||||++++.+
T Consensus 321 ~~~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~ 400 (809)
T KOG0247|consen 321 RSQDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNY 400 (809)
T ss_pred cccccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHh
Confidence 1116777777777899999999999999999999999999876 344588999999999999999
Q ss_pred cCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccccc
Q psy37 213 LGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 255 (279)
Q Consensus 213 l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~ 255 (279)
|.|..+++||+||+|..++|+|+++.|+||+.++.+...+.+.
T Consensus 401 f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 401 FDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred cCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCccc
Confidence 9999999999999999999999999999999999998766554
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-43 Score=329.17 Aligned_cols=222 Identities=40% Similarity=0.545 Sum_probs=181.9
Q ss_pred cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccC
Q psy37 17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFD 96 (279)
Q Consensus 17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~ 96 (279)
+..|.||+||++.++|++||+..++|+++.++.|+|+||||||||||||||||.|..+.+|++|+++..+ |+.......
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~l-f~~l~~~~~ 133 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKEL-FSKLEDLSM 133 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHH-HHHHHhccc
Confidence 5669999999999999999999999999999999999999999999999999999999999999999999 887654332
Q ss_pred -CCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc---------eEEEec----------------------
Q psy37 97 -PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK---------TFTMMG---------------------- 144 (279)
Q Consensus 97 -~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~---------~~~~~g---------------------- 144 (279)
.. +.+..+++|+|+|.++||+.+.... ...+.+
T Consensus 134 ~~~---------------~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~n 198 (568)
T COG5059 134 TKD---------------FAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKN 198 (568)
T ss_pred Ccc---------------eeeEeehhHHHhhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhh
Confidence 11 3334466666666666665433321 000000
Q ss_pred ------------------------------------cccccccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy37 145 ------------------------------------SKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLA 188 (279)
Q Consensus 145 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~ 188 (279)
...-...++++........+.++.|+..||+||.+|++||.+|.
T Consensus 199 r~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~ 278 (568)
T COG5059 199 RTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALG 278 (568)
T ss_pred cccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHh
Confidence 01111124556655555678899999999999999999999997
Q ss_pred hhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccC
Q psy37 189 ELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNE 256 (279)
Q Consensus 189 ~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~ 256 (279)
.. ++..|||||+|+|||+|+++|||++++++||||+|...++++|.+||+||.+++.|++.+..+.
T Consensus 279 ~~--~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 279 DK--KKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred cc--ccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 42 4788999999999999999999999999999999999999999999999999999999999995
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=2.1e-36 Score=245.91 Aligned_cols=179 Identities=40% Similarity=0.572 Sum_probs=127.4
Q ss_pred HHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCCCCcccccHHHHHhhhch
Q psy37 35 VFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGM 114 (279)
Q Consensus 35 vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~~~~~~~s~~ei~~~~~~ 114 (279)
||+.++ |+|+.+++|+|+|||+||||||||||||+|+..++|++|++++++ +.....-.......... .|...-
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~~-~~ll~~g~~~R~~~~t~----~N~~SS 81 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTDV-IDLMDKGNANRTTAATA----MNEHSS 81 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHHH-HHHHhhccccccccccC----CCCccC
Confidence 999999 999999999999999999999999999999999999999999875 43332111110000000 000000
Q ss_pred hhHhhhhhccceeeeeccccCCCceEEEeccccccccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhCCC
Q psy37 115 DVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKK 194 (279)
Q Consensus 115 ~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~~~~~~~ 194 (279)
. .-.++.++ +........+......+...-...+|+|++......+++++|+..||+||.+|++||.+|++ +
T Consensus 82 R-sH~i~~i~---v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~----~ 153 (186)
T cd01363 82 R-SHSVFRIH---FGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAE----R 153 (186)
T ss_pred c-ccEEEEEE---EEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhc----C
Confidence 0 00011111 11110111011112223334455578888887778889999999999999999999999985 6
Q ss_pred CCcccccchhHHHHhHhhcCCCceEEEEEEeCC
Q psy37 195 STFIPYRDSVLTWLLKDSLGGNSKTIMIAAISP 227 (279)
Q Consensus 195 ~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp 227 (279)
..+||||+||||++|+|+|+|+++|+||+||||
T Consensus 154 ~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 154 DSHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred CCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 789999999999999999999999999999998
No 30
>KOG0245|consensus
Probab=97.93 E-value=1.9e-05 Score=76.50 Aligned_cols=79 Identities=58% Similarity=1.063 Sum_probs=69.4
Q ss_pred CCceeEecCCCCCCCCCCCccccceecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEE
Q psy37 63 SGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142 (279)
Q Consensus 63 SGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~ 142 (279)
.|+|.|+.+++....- ..+.|+.++|..+...+.++++..+|.+++.+++...||+||.|++.+++.++|++++|
T Consensus 31 ~gn~ttii~~~~~k~~-----~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTM 105 (1221)
T KOG0245|consen 31 QGNTTTIINPKGSKDA-----PKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTM 105 (1221)
T ss_pred cCCceeeecCCCcccC-----CceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceee
Confidence 4678899876533221 12669999999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q psy37 143 MGSK 146 (279)
Q Consensus 143 ~g~~ 146 (279)
+|-.
T Consensus 106 MG~~ 109 (1221)
T KOG0245|consen 106 MGFQ 109 (1221)
T ss_pred eccC
Confidence 9977
No 31
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.78 E-value=0.005 Score=51.31 Aligned_cols=49 Identities=29% Similarity=0.445 Sum_probs=29.4
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
|+||..+. ..+++..|..+- .+.+.--..+| .++-||++|+||||-|.+
T Consensus 5 ~tFdnfv~-g~~N~~a~~~~~-~ia~~~~~~~~-~l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 5 YTFDNFVV-GESNELAYAAAK-AIAENPGERYN-PLFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp -SCCCS---TTTTHHHHHHHH-HHHHSTTTSSS-EEEEEESTTSSHHHHHHH
T ss_pred CccccCCc-CCcHHHHHHHHH-HHHhcCCCCCC-ceEEECCCCCCHHHHHHH
Confidence 56666553 455677665443 44444112233 478899999999998755
No 32
>KOG4280|consensus
Probab=95.58 E-value=0.018 Score=54.07 Aligned_cols=44 Identities=50% Similarity=0.894 Sum_probs=41.8
Q ss_pred cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37 102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145 (279)
Q Consensus 102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~ 145 (279)
.+.+.++|+..+.+++.+++++||.+|+.+++.++|++++|.|.
T Consensus 63 ~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~ 106 (574)
T KOG4280|consen 63 DSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGP 106 (574)
T ss_pred CCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCC
Confidence 45788999999999999999999999999999999999999998
No 33
>PRK06893 DNA replication initiation factor; Validated
Probab=95.35 E-value=0.014 Score=48.88 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=30.2
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
++||..+..+ +..-+ . .+.+..-.+.+..++-||++|+||||.+.+
T Consensus 13 ~~fd~f~~~~-~~~~~-~----~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 13 ETLDNFYADN-NLLLL-D----SLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred ccccccccCC-hHHHH-H----HHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 5788877544 22211 1 222333346777899999999999999865
No 34
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.30 E-value=0.0056 Score=52.62 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=28.5
Q ss_pred HHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 40 GMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 40 ~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.+|++..+.+--++.|+.-|+||||||.||-.
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlAa 144 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLAA 144 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHHH
Confidence 45688899999999999999999999999854
No 35
>KOG0241|consensus
Probab=95.12 E-value=0.038 Score=54.07 Aligned_cols=65 Identities=57% Similarity=1.150 Sum_probs=59.4
Q ss_pred ccceecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccccc
Q psy37 84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKAR 148 (279)
Q Consensus 84 ~~l~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~~ 148 (279)
+.+.|+.+.|..+++...+++++.+|.-++..++.+.+++||.|++.+++.++++++.++|....
T Consensus 53 ktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~Q 117 (1714)
T KOG0241|consen 53 KTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQ 117 (1714)
T ss_pred ceeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCCC
Confidence 34458999999999999999999999999999999999999999999999999999999987654
No 36
>PRK06620 hypothetical protein; Validated
Probab=94.97 E-value=0.017 Score=47.96 Aligned_cols=48 Identities=25% Similarity=0.260 Sum_probs=31.8
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccC---eeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYN---ACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n---~~v~~yG~tgSGKT~Tl~G 71 (279)
|+||..+ ...+++..|..+.. +.+ -+ |.| -.++-||++|+||||.+..
T Consensus 13 ~tfd~Fv-vg~~N~~a~~~~~~-~~~-~~-~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 13 YHPDEFI-VSSSNDQAYNIIKN-WQC-GF-GVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCchhhE-ecccHHHHHHHHHH-HHH-cc-ccCCCcceEEEECCCCCCHHHHHHH
Confidence 4566655 44556777777652 332 12 333 4599999999999999865
No 37
>PRK12377 putative replication protein; Provisional
Probab=94.57 E-value=0.036 Score=47.01 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=34.3
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
+||.....+..|..++..+ ..+++.+..+. ..++-+|++|+||||.+.+
T Consensus 72 tFdnf~~~~~~~~~a~~~a-~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQA-KSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CcCCcccCChhHHHHHHHH-HHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 4555444455666666654 46777776553 5789999999999999855
No 38
>PRK09087 hypothetical protein; Validated
Probab=94.43 E-value=0.027 Score=47.09 Aligned_cols=46 Identities=22% Similarity=0.064 Sum_probs=30.1
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
|+||..+..+ .+..+|..+ ++...-.+..++-||++||||||.+..
T Consensus 18 ~~~~~Fi~~~-~N~~a~~~l-----~~~~~~~~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 18 YGRDDLLVTE-SNRAAVSLV-----DHWPNWPSPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CChhceeecC-chHHHHHHH-----HhcccCCCCeEEEECCCCCCHHHHHHH
Confidence 5777776433 445577633 332222345689999999999999864
No 39
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.16 E-value=0.027 Score=47.41 Aligned_cols=46 Identities=11% Similarity=0.377 Sum_probs=29.8
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
|.||..+.. .+...+..+- .+.. ......++-||++|+||||.+.+
T Consensus 19 ~~fd~f~~~--~n~~a~~~l~-~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 19 ETFASFYPG--DNDSLLAALQ-NALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCccccccC--ccHHHHHHHH-HHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 567765544 5666665443 2221 22234799999999999999864
No 40
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.12 E-value=0.021 Score=52.63 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=26.9
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
..+..+++.-.+-|+.-|+||||||.||+.
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 466778888999999999999999999987
No 41
>PRK05642 DNA replication initiation factor; Validated
Probab=94.04 E-value=0.041 Score=46.27 Aligned_cols=45 Identities=16% Similarity=0.392 Sum_probs=27.9
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccc----cCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEG----YNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G----~n~~v~~yG~tgSGKT~Tl~G 71 (279)
|+||..+.. .+... ...+++..++ -...++-||++|+||||-+.+
T Consensus 16 ~tfdnF~~~--~~~~a-----~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 16 ATFANYYPG--ANAAA-----LGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred ccccccCcC--ChHHH-----HHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 678887733 23332 2334333222 235688999999999999754
No 42
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.03 E-value=0.027 Score=53.63 Aligned_cols=56 Identities=27% Similarity=0.456 Sum_probs=35.5
Q ss_pred eeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 12 DFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 12 ~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
...+... |.||..+-. .++.-.|..+ ..+++..-.++|. |+-||.+|+||||.+.+
T Consensus 278 ~a~L~~~-~TFDnFvvG-~sN~~A~aaa-~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 278 TARLNPK-YTFDTFVIG-ASNRFAHAAA-VAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred cCCCCCC-CCHhhhcCC-CccHHHHHHH-HHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 3445444 578876633 3455555433 3555543345565 89999999999999865
No 43
>PRK08116 hypothetical protein; Validated
Probab=93.99 E-value=0.04 Score=47.35 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=32.7
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhcc--ccCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFE--GYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~--G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
++||... .+..+...|..+ ...++.+.+ ..+..++.||++|+||||.+..
T Consensus 82 ~tFdnf~-~~~~~~~a~~~a-~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 82 STFENFL-FDKGSEKAYKIA-RKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred cchhccc-CChHHHHHHHHH-HHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 3455433 345566565544 466766543 3445699999999999998854
No 44
>PRK06526 transposase; Provisional
Probab=93.75 E-value=0.025 Score=48.25 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=29.3
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.||.-+.+.-++..+..-...+.++ .+. .|+.+|++|+||||...+
T Consensus 72 ~fd~~~~~~~~~~~~~~l~~~~fi~---~~~--nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 72 EFDFDHQRSLKRDTIAHLGTLDFVT---GKE--NVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hccCccCCCcchHHHHHHhcCchhh---cCc--eEEEEeCCCCchHHHHHH
Confidence 4554455555666555433333332 343 489999999999999865
No 45
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.68 E-value=0.061 Score=48.21 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=29.6
Q ss_pred cCCCCCCCCCHHHHHHHhHHHHHHHhcc-ccCeeEeeccCcCCCceeEec
Q psy37 22 FDPSSPQFASQEQVFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 22 fd~vf~~~~~q~~vy~~~~~~lv~~v~~-G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
-|++.+.=...++-.+.+. ..+..++. +...+++.||++|+|||+++.
T Consensus 10 ~~~~p~~l~gRe~e~~~l~-~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELA-KALRPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CCCCCCCCCCcHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 3333333334444444444 33444443 556789999999999999884
No 46
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.53 E-value=0.045 Score=50.50 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=32.4
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
|+||.... ..++...|..+. .+.++ -..+|. ++-||++|+||||.+.+
T Consensus 102 ~tFdnFv~-g~~n~~a~~~~~-~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 102 YTFENFVV-GPGNSFAYHAAL-EVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred Cccccccc-CCchHHHHHHHH-HHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 68888664 355666666544 34433 112554 99999999999999864
No 47
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.50 E-value=0.081 Score=44.77 Aligned_cols=49 Identities=18% Similarity=0.225 Sum_probs=32.2
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
+||........|..++..+. ..++.+..+. ..++.+|++|+||||.+.+
T Consensus 70 tFdnf~~~~~~q~~al~~a~-~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 70 SFENYRVECEGQMNALSKAR-QYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred ccccccCCCchHHHHHHHHH-HHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 44443333455666666554 5666655443 3789999999999999855
No 48
>PF13245 AAA_19: Part of AAA domain
Probab=93.42 E-value=0.025 Score=38.65 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=19.0
Q ss_pred HHHhccccCeeEeeccCcCCCceeEecC
Q psy37 44 VDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 44 v~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
|...+. -+..++.-|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 444455 445566689999999999743
No 49
>PRK08181 transposase; Validated
Probab=92.98 E-value=0.1 Score=44.88 Aligned_cols=49 Identities=27% Similarity=0.372 Sum_probs=29.1
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhc-cccCeeEeeccCcCCCceeEecC
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAF-EGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~-~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.+-.||.-+.+.-+...+..-.. .+..+ .|.| |+.+|++|+||||-+.+
T Consensus 76 tle~fd~~~~~~~~~~~~~~L~~---~~~~~~~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 76 TLDSFDFEAVPMVSKAQVMAIAA---GDSWLAKGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred CHhhCCccCCCCCCHHHHHHHHH---HHHHHhcCce--EEEEecCCCcHHHHHHH
Confidence 33345544555555555543322 22222 4444 99999999999998865
No 50
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=92.87 E-value=0.095 Score=43.67 Aligned_cols=47 Identities=13% Similarity=0.280 Sum_probs=28.6
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
++||.++. ..++++... +..++.. ......++-+|++|+||||.+..
T Consensus 15 ~~~d~f~~--~~~~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 15 PTFDNFVA--GENAELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred hhhccccc--CCcHHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 56777662 223334332 3333331 23456899999999999998744
No 51
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.71 E-value=0.13 Score=45.54 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=26.5
Q ss_pred HHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 33 EQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 33 ~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
..+++.+ ...++.+-.+. -.++.||++|+||||.+.+
T Consensus 166 ~~~~~~~-~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 166 EKILEKC-KNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHH-HHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 3444433 35777776544 6699999999999998754
No 52
>PRK08727 hypothetical protein; Validated
Probab=92.49 E-value=0.091 Score=44.15 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=16.6
Q ss_pred eeEeeccCcCCCceeEecC
Q psy37 53 ACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~G 71 (279)
-.|+-||++|+||||.+.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4599999999999998855
No 53
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=92.38 E-value=0.47 Score=42.54 Aligned_cols=62 Identities=68% Similarity=1.272 Sum_probs=53.2
Q ss_pred ceecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37 86 FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA 147 (279)
Q Consensus 86 l~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~ 147 (279)
+.|+.+.+..+......+++.++|+..+.+++.+++.+|+.+|+.+++.++|+++++.|...
T Consensus 50 f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~ 111 (356)
T cd01365 50 FSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKE 111 (356)
T ss_pred EECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCC
Confidence 33777766666666677889999999999999999999999999999999999999998643
No 54
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.37 E-value=0.12 Score=42.74 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=30.3
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
++||.... + .++.+++.+- .++ .......|+.||++|+||||.+..
T Consensus 12 ~~~~~~~~-~-~~~~~~~~l~-~~~---~~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 12 PTFDNFYA-G-GNAELLAALR-QLA---AGKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred hhhcCcCc-C-CcHHHHHHHH-HHH---hcCCCCeEEEECCCCCCHHHHHHH
Confidence 56666663 2 4555555443 222 245677899999999999998743
No 55
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=92.29 E-value=0.063 Score=42.55 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=17.3
Q ss_pred cCeeEeeccCcCCCceeEecC
Q psy37 51 YNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl~G 71 (279)
....++..++||||||++|..
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCcChhhhh
Confidence 466677788999999999964
No 56
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.26 E-value=0.067 Score=46.92 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=30.0
Q ss_pred CCHHHHHHHhHHHHHHHhccc-cCeeEeeccCcCCCceeEecC
Q psy37 30 ASQEQVFNDLGMDVVDAAFEG-YNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 30 ~~q~~vy~~~~~~lv~~v~~G-~n~~v~~yG~tgSGKT~Tl~G 71 (279)
..+..++..+ ...++....| ..-.++.||++|+||||.+.+
T Consensus 134 ~~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 134 RDRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred hHHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 3666777754 4677766544 334699999999999999865
No 57
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.18 E-value=0.14 Score=46.37 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=24.8
Q ss_pred HHHHHHHhHHHHHHHhc-cccCeeEeeccCcCCCceeEec
Q psy37 32 QEQVFNDLGMDVVDAAF-EGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 32 q~~vy~~~~~~lv~~v~-~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
-++-.+.+. ..+...+ .+....++-||++|+|||+++.
T Consensus 35 Re~e~~~l~-~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 35 REEQIEELA-FALRPALRGSRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred HHHHHHHHH-HHHHHHhCCCCCCeEEEECCCCCCHHHHHH
Confidence 344444443 3333444 4455678999999999999884
No 58
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.13 E-value=0.098 Score=47.76 Aligned_cols=49 Identities=22% Similarity=0.250 Sum_probs=30.3
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
|.||.... ...+...|..+. .+.+.- .+.--.++-||++|+||||.+..
T Consensus 107 ~tfd~fi~-g~~n~~a~~~~~-~~~~~~-~~~~n~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 107 YTFDNFVV-GKSNRLAHAAAL-AVAENP-GKAYNPLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred Cccccccc-CCcHHHHHHHHH-HHHhCc-CccCCeEEEECCCCCcHHHHHHH
Confidence 57887442 455665655443 444431 11122478899999999999854
No 59
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.02 E-value=0.094 Score=48.61 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=30.5
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
|.||.... ...+...|..+- .+.+.--..+| .++-||++|+||||.+..
T Consensus 119 ~tfd~fv~-g~~n~~a~~~~~-~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 119 YTFDNFVV-GKSNRLAHAAAL-AVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred Cccccccc-CCCcHHHHHHHH-HHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 57887543 345555555443 34433212233 588899999999999854
No 60
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=91.91 E-value=0.14 Score=47.42 Aligned_cols=47 Identities=28% Similarity=0.367 Sum_probs=29.4
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
|....-|.|.-+|-+- +..+++.+-+|.. .-...|.|||||||||--
T Consensus 5 F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~-~QtLLGvTGSGKTfT~An 51 (663)
T COG0556 5 FKLHSPFKPAGDQPEA----IAELVEGIENGLK-HQTLLGVTGSGKTFTMAN 51 (663)
T ss_pred eEeccCCCCCCCcHHH----HHHHHHHHhcCce-eeEEeeeccCCchhHHHH
Confidence 3444456777777553 2344444444433 455679999999999943
No 61
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.83 E-value=0.095 Score=39.45 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=17.9
Q ss_pred HhccccCeeEeeccCcCCCceeEe
Q psy37 46 AAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 46 ~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+.......++.+|++|+|||+.+
T Consensus 13 ~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 13 ALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHhCCCCCeEEEECCCCCCHHHHH
Confidence 333334557889999999999876
No 62
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.81 E-value=0.097 Score=44.47 Aligned_cols=36 Identities=33% Similarity=0.401 Sum_probs=28.3
Q ss_pred HHHh-HHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 36 FNDL-GMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 36 y~~~-~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
|++. .+|+++++.---.+.|+..|+|||||+.||-.
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmAa 146 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMAA 146 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHHH
Confidence 4444 44578887777778899999999999999853
No 63
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=0.12 Score=46.39 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=19.8
Q ss_pred HHHhc-cccCeeEeeccCcCCCceeEe
Q psy37 44 VDAAF-EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 44 v~~v~-~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+..++ .+....++.||.+|+|||.|+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 33444 455555999999999999987
No 64
>PRK10436 hypothetical protein; Provisional
Probab=91.55 E-value=0.061 Score=49.82 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=25.1
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
..+..++..-.+.|+..|+||||||.||+.
T Consensus 208 ~~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 208 AQFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 345566777889999999999999999964
No 65
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=91.42 E-value=0.19 Score=42.90 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 28 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 28 ~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
+...+..++.... .+++.+- ....++-||++|+||||-..+
T Consensus 84 ~~~~~~~~l~~~~-~~~~~~~--~~~nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 84 QPGIDKKALEDLA-SLVEFFE--RGENLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CcchhHHHHHHHH-HHHHHhc--cCCcEEEECCCCCcHHHHHHH
Confidence 4456777777765 5665555 555678899999999998755
No 66
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.20 E-value=0.073 Score=50.75 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=25.1
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.+..++..-.+.|+..|+||||||.||+.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 56677778889999999999999999965
No 67
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.08 E-value=0.12 Score=46.86 Aligned_cols=49 Identities=24% Similarity=0.322 Sum_probs=30.2
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
|.||... +..++.-.|.... .+...-.+.---++-||++|+||||-|..
T Consensus 84 ytFdnFv-~g~~N~~A~aa~~--~va~~~g~~~nplfi~G~~GlGKTHLl~A 132 (408)
T COG0593 84 YTFDNFV-VGPSNRLAYAAAK--AVAENPGGAYNPLFIYGGVGLGKTHLLQA 132 (408)
T ss_pred Cchhhee-eCCchHHHHHHHH--HHHhccCCcCCcEEEECCCCCCHHHHHHH
Confidence 5666655 4455555544433 22222223345688999999999999964
No 68
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=90.89 E-value=0.15 Score=47.27 Aligned_cols=49 Identities=31% Similarity=0.396 Sum_probs=30.9
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
|+||.....+ +++..|..+ ..+++.--..+| .++-||++|+||||.|.+
T Consensus 112 ~tFdnFv~g~-~n~~A~~aa-~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 112 NTFENFVIGS-SNEQAFIAV-QTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred cchhcccCCC-cHHHHHHHH-HHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 6888866443 555566433 344432111123 488999999999999865
No 69
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=90.78 E-value=0.095 Score=48.99 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=25.0
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
..+..++..-.+.|+..|+||||||.||..
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 355666777788999999999999999974
No 70
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=90.47 E-value=0.088 Score=42.97 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=21.8
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
..+..++...+..++..|+.|+||||+|.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 45666665555566778999999999873
No 71
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.11 E-value=0.11 Score=46.34 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=23.5
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
|.+..++.--.+.|+..|+||||||.||..
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 455555554567899999999999999964
No 72
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=89.99 E-value=0.19 Score=40.36 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=16.1
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
.-.++.+|++|+||||...+
T Consensus 47 ~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp --EEEEEESTTSSHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHH
Confidence 45699999999999998755
No 73
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.99 E-value=0.12 Score=46.52 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=21.0
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
+++.++. .++.|+..|+||||||.||..
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHHH
Confidence 4444443 456788999999999999954
No 74
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.73 E-value=0.091 Score=42.96 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=17.0
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
++.|+..|+||||||.++..
T Consensus 1 ~GlilI~GptGSGKTTll~~ 20 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAA 20 (198)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 36789999999999999853
No 75
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=89.71 E-value=0.086 Score=39.27 Aligned_cols=17 Identities=41% Similarity=0.515 Sum_probs=15.0
Q ss_pred EeeccCcCCCceeEecC
Q psy37 55 VFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl~G 71 (279)
++.+|++|+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 67899999999999865
No 76
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=89.66 E-value=0.51 Score=41.99 Aligned_cols=48 Identities=46% Similarity=0.797 Sum_probs=43.0
Q ss_pred CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
+....++.++|+..+.+++.+++++|+.+++.+++.++|+++++.|..
T Consensus 62 f~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~ 109 (338)
T cd01370 62 FDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTD 109 (338)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCC
Confidence 344567899999999999999999999999999999999999999864
No 77
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=89.46 E-value=0.86 Score=40.21 Aligned_cols=44 Identities=45% Similarity=0.714 Sum_probs=40.8
Q ss_pred ccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 103 ASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 103 ~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
..+.++|+....+++..++++|+.+++.+++.++|+++++.|..
T Consensus 59 ~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~ 102 (319)
T cd01376 59 CTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDP 102 (319)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCc
Confidence 57889999999999999999999999999999999999999854
No 78
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.21 E-value=0.16 Score=43.57 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=23.7
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
..+..++..-.+.|+..|+||||||.||..
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 345566666677899999999999999854
No 79
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=89.14 E-value=0.5 Score=42.06 Aligned_cols=46 Identities=52% Similarity=0.943 Sum_probs=42.0
Q ss_pred cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37 102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA 147 (279)
Q Consensus 102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~ 147 (279)
...+.++|+..+.+++..++++|+.+++.+++.++|+++++.|...
T Consensus 52 ~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~ 97 (337)
T cd01373 52 NTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSS 97 (337)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCC
Confidence 4678899999999999999999999999999999999999999654
No 80
>KOG0989|consensus
Probab=89.12 E-value=0.23 Score=43.07 Aligned_cols=38 Identities=26% Similarity=0.300 Sum_probs=24.6
Q ss_pred HHHHHHhHHHHHHHhccc-cCeeEeeccCcCCCceeEec
Q psy37 33 EQVFNDLGMDVVDAAFEG-YNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 33 ~~vy~~~~~~lv~~v~~G-~n~~v~~yG~tgSGKT~Tl~ 70 (279)
+-++++.+-.++.+.+.+ .--..+.||+.|+|||.|..
T Consensus 37 e~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred hhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 333444434545555544 44568899999999999863
No 81
>KOG0243|consensus
Probab=89.10 E-value=0.75 Score=46.11 Aligned_cols=48 Identities=40% Similarity=0.784 Sum_probs=42.7
Q ss_pred ccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccccccc
Q psy37 103 ASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNF 150 (279)
Q Consensus 103 ~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~~~~ 150 (279)
+.++++|+....+++.-++++||+.|+.|++.+.|++++|.|......
T Consensus 107 s~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~ 154 (1041)
T KOG0243|consen 107 SQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKN 154 (1041)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCccccc
Confidence 447889999999999999999999999999999999999999766444
No 82
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.05 E-value=0.13 Score=44.16 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=20.9
Q ss_pred HHHHHhcccc---CeeEeeccCcCCCceeEec
Q psy37 42 DVVDAAFEGY---NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 42 ~lv~~v~~G~---n~~v~~yG~tgSGKT~Tl~ 70 (279)
+.+..++... .+.|+.-|+||||||.+|.
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHH
Confidence 3344444444 6778888999999999984
No 83
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=89.04 E-value=0.15 Score=45.72 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=21.4
Q ss_pred HHhccccCeeEeeccCcCCCceeEecC
Q psy37 45 DAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 45 ~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
...+.--.+.|+..|+||||||.||..
T Consensus 127 ~~~~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 127 IDAIAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HHHHhccCCEEEEECCCCCCHHHHHHH
Confidence 334444578999999999999999865
No 84
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=89.03 E-value=0.11 Score=43.32 Aligned_cols=18 Identities=44% Similarity=0.689 Sum_probs=15.5
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
+--+..+|.||||||+|+
T Consensus 23 ~~H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTV 40 (229)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 446778999999999998
No 85
>PRK09183 transposase/IS protein; Provisional
Probab=88.94 E-value=0.23 Score=42.44 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=26.1
Q ss_pred cCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 22 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 22 fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
||.-|.+..+...+..-..... +-.|. .|+.+|++|+||||.+.+
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~--~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNE--NIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCC--eEEEEeCCCCCHHHHHHH
Confidence 4444556666655432211111 22343 477899999999998754
No 86
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=88.86 E-value=0.087 Score=39.49 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=13.1
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
..+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999987
No 87
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=88.54 E-value=0.12 Score=38.47 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=16.3
Q ss_pred eeEeeccCcCCCceeEecC
Q psy37 53 ACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~G 71 (279)
..++-+|++|||||.++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4688999999999999844
No 88
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=88.53 E-value=0.24 Score=44.52 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=28.3
Q ss_pred CCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 29 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 29 ~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+..|.++|+.+...+.. .....+|.-|+.|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 46799999998754332 34456788999999999987
No 89
>PRK06921 hypothetical protein; Provisional
Probab=88.48 E-value=0.46 Score=40.76 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=22.6
Q ss_pred HHHHHHhc---cccCeeEeeccCcCCCceeEecC
Q psy37 41 MDVVDAAF---EGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 41 ~~lv~~v~---~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
...++++- .+....++.||++|+||||.+.+
T Consensus 103 ~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 103 VEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 35666553 23456789999999999999855
No 90
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=88.28 E-value=0.19 Score=44.20 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=22.6
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
+++..++++. +.|+..|.||||||.++.-
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlLNa 192 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLLNA 192 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHHHH
Confidence 4555556655 8899999999999998843
No 91
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=88.08 E-value=0.32 Score=44.96 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=30.6
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHh--ccc--cCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAA--FEG--YNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v--~~G--~n~~v~~yG~tgSGKT~Tl~G 71 (279)
|+||.... ..+++..|..+ ..+.+.. ..| +| -++-||++|+||||.+..
T Consensus 108 ~tFdnFv~-g~~N~~a~~~a-~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 108 MTFANFLV-TPENDLPHRIL-QEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQA 160 (445)
T ss_pred ccccceee-CCcHHHHHHHH-HHHHhccccccCCCCc-eEEEEcCCCCCHHHHHHH
Confidence 57887664 34555555443 3444433 223 23 467899999999998854
No 92
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.94 E-value=0.17 Score=41.70 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=20.9
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.+.+.+-.|.+.+++.||+.|+|||..|.
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 34444445668899999999999999873
No 93
>PF12846 AAA_10: AAA-like domain
Probab=87.75 E-value=0.14 Score=44.08 Aligned_cols=19 Identities=42% Similarity=0.590 Sum_probs=16.4
Q ss_pred CeeEeeccCcCCCceeEec
Q psy37 52 NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~ 70 (279)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5568899999999999884
No 94
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=87.63 E-value=0.35 Score=37.80 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=21.5
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.+++.+.+|.+ ++..|+||+|||.....
T Consensus 6 ~~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 6 EAIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 34555666766 88999999999998754
No 95
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=87.49 E-value=0.17 Score=40.22 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=13.5
Q ss_pred ccccCeeEeeccCcCCCceeEe
Q psy37 48 FEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 48 ~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
..|-..+++.+|.+|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 4677788999999999999987
No 96
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=87.18 E-value=0.27 Score=43.35 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=20.6
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.++..++.+. ..|+..|+||||||.+|.
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 5666666654 556666999999998764
No 97
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=87.03 E-value=0.28 Score=40.39 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=18.9
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
..|..++.-.. ..+..|+.|||||+|+..
T Consensus 8 ~Ai~~~~~~~~-~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 8 EAIQSALSSNG-ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp HHHHHHCTSSE--EEEE-STTSSHHHHHHH
T ss_pred HHHHHHHcCCC-CEEEECCCCCChHHHHHH
Confidence 34556664433 566689999999998854
No 98
>PHA00729 NTP-binding motif containing protein
Probab=86.78 E-value=0.47 Score=39.57 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=23.5
Q ss_pred HHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 40 GMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 40 ~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
++.+++.+..|--..|+.+|.+|+||||....
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 34566666654446899999999999997644
No 99
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=86.65 E-value=0.16 Score=41.42 Aligned_cols=16 Identities=44% Similarity=0.586 Sum_probs=14.6
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 5788999999999998
No 100
>KOG0242|consensus
Probab=86.28 E-value=0.83 Score=44.44 Aligned_cols=52 Identities=46% Similarity=0.693 Sum_probs=45.6
Q ss_pred CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37 96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA 147 (279)
Q Consensus 96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~ 147 (279)
+..+.......++|.....+++.++++++|..|+.|++.++|++++|.|...
T Consensus 58 D~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~ 109 (675)
T KOG0242|consen 58 DRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSED 109 (675)
T ss_pred eeecCCCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCC
Confidence 4444455678899999999999999999999999999999999999999854
No 101
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=86.22 E-value=0.4 Score=42.26 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=17.3
Q ss_pred cccCeeEeeccCcCCCceeEec
Q psy37 49 EGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.|....++.||++|+|||+++.
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CCCCceEEEECCCCCCHHHHHH
Confidence 4444468899999999998773
No 102
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=86.20 E-value=0.36 Score=41.10 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=27.4
Q ss_pred CCCCCCCHHHHHHHhHHH-H---HHHhccccCeeEeeccCcCCCceeEec
Q psy37 25 SSPQFASQEQVFNDLGMD-V---VDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 25 vf~~~~~q~~vy~~~~~~-l---v~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
-|........+|..-... + ++..++.....++.+|++|+|||+.+.
T Consensus 12 pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 12 PFQLLPDPDFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCCCCCHHHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 445444444444443322 2 223334445678899999999999874
No 103
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=86.02 E-value=0.92 Score=40.07 Aligned_cols=47 Identities=43% Similarity=0.698 Sum_probs=42.3
Q ss_pred cccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 100 PQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 100 ~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
.....+.++|+..+.+++..++++|+.+++.+++.++|+++++.|..
T Consensus 60 ~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~ 106 (322)
T cd01367 60 DEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDE 106 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcC
Confidence 34467889999999999999999999999999999999999999865
No 104
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=85.98 E-value=1.1 Score=40.00 Aligned_cols=48 Identities=35% Similarity=0.583 Sum_probs=43.0
Q ss_pred CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
+.....+.++|+..+.+++..++++|+.+++.+++.++|+++++.|..
T Consensus 63 f~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~ 110 (345)
T cd01368 63 FGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP 110 (345)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCC
Confidence 344578899999998999999999999999999999999999999865
No 105
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=85.61 E-value=0.29 Score=36.44 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.6
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+-+|+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999986
No 106
>PLN03188 kinesin-12 family protein; Provisional
Probab=85.48 E-value=0.88 Score=46.49 Aligned_cols=48 Identities=46% Similarity=0.817 Sum_probs=43.2
Q ss_pred CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
+.....+.++|+..+.+++..++++||.+|+.|++.++|+++++.|..
T Consensus 140 Fdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~ 187 (1320)
T PLN03188 140 ADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPA 187 (1320)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCC
Confidence 334577889999999999999999999999999999999999999964
No 107
>PF13479 AAA_24: AAA domain
Probab=85.43 E-value=0.28 Score=40.61 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=16.7
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45789999999999987654
No 108
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=85.35 E-value=0.29 Score=42.80 Aligned_cols=30 Identities=33% Similarity=0.375 Sum_probs=22.5
Q ss_pred HHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 41 MDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 41 ~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.+++..++.+ ...|+..|+||||||.+|..
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~a 151 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLANA 151 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHHH
Confidence 3566666664 45688999999999999743
No 109
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=85.29 E-value=0.82 Score=39.60 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=15.7
Q ss_pred eeEeeccCcCCCceeEecC
Q psy37 53 ACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~G 71 (279)
..|+..|++|+|||+|+..
T Consensus 195 ~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3677779999999999844
No 110
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.25 E-value=0.73 Score=41.79 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=16.8
Q ss_pred CeeEeeccCcCCCceeEec
Q psy37 52 NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~ 70 (279)
...|+.+|++|+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4689999999999999983
No 111
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=84.81 E-value=0.33 Score=35.80 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=13.9
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999875
No 112
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=84.78 E-value=0.57 Score=46.68 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=17.8
Q ss_pred cccCeeEeeccCcCCCceeEec
Q psy37 49 EGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.|-+.+++.||++|+|||.|+.
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHH
Confidence 3455677899999999999983
No 113
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=84.71 E-value=0.5 Score=38.85 Aligned_cols=20 Identities=40% Similarity=0.649 Sum_probs=14.3
Q ss_pred cCeeEeeccCcCCCceeEec
Q psy37 51 YNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.+-.+++.|+.|||||+.-.
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHH
T ss_pred hCCeEEEECCCCCcHHHHHH
Confidence 56689999999999998654
No 114
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=84.68 E-value=0.31 Score=37.08 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=13.5
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999875
No 115
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=84.43 E-value=1.6 Score=39.00 Aligned_cols=48 Identities=42% Similarity=0.747 Sum_probs=43.0
Q ss_pred ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccccc
Q psy37 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKAR 148 (279)
Q Consensus 101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~~ 148 (279)
....+.++|+..+.+++..++++|+.+++.+++.++|+++++.|....
T Consensus 58 ~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~ 105 (352)
T cd01364 58 PEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTD 105 (352)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcc
Confidence 446789999999999999999999999999999999999999986543
No 116
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=84.18 E-value=0.26 Score=42.76 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=16.7
Q ss_pred cCeeEeeccCcCCCceeEecC
Q psy37 51 YNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.++.++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 677888889999999999954
No 117
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=84.18 E-value=0.31 Score=41.40 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=16.6
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
=..-.|+.||++|+|||++-
T Consensus 149 WAPknVLFyGppGTGKTm~A 168 (368)
T COG1223 149 WAPKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cCcceeEEECCCCccHHHHH
Confidence 34568999999999999864
No 118
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=84.15 E-value=0.44 Score=38.40 Aligned_cols=29 Identities=31% Similarity=0.308 Sum_probs=21.3
Q ss_pred HHHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 41 MDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 41 ~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.+++...++. ...++..|++|||||.+|.
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 3566666654 3567888999999998764
No 119
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=84.09 E-value=1.4 Score=39.14 Aligned_cols=51 Identities=53% Similarity=0.858 Sum_probs=44.4
Q ss_pred CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37 96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA 147 (279)
Q Consensus 96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~ 147 (279)
+..+.. ..++++|+..+.+++..++++|+.+++.+++.++|+++++.|...
T Consensus 53 D~vf~~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~ 103 (334)
T cd01375 53 DGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTE 103 (334)
T ss_pred CcccCC-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCC
Confidence 333444 789999999999999999999999999999999999999998643
No 120
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=84.02 E-value=0.42 Score=42.17 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=21.5
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
+++..++.+. ..|+..|+||||||.+|..
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~a 163 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLANA 163 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHHH
Confidence 5555666543 3588999999999999844
No 121
>KOG0239|consensus
Probab=83.88 E-value=1.1 Score=43.61 Aligned_cols=50 Identities=54% Similarity=0.979 Sum_probs=41.6
Q ss_pred cCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37 95 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145 (279)
Q Consensus 95 ~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~ 145 (279)
++..+....++.++|.+. -.++.+++++||.|++.+++.+++++++|.|.
T Consensus 364 fdkVf~p~~sQ~~VF~e~-~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~ 413 (670)
T KOG0239|consen 364 FDKVFGPLASQDDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP 413 (670)
T ss_pred eeeecCCcccHHHHHHHH-HHHHHHHhcCcceeEEEecccCCCccccccCC
Confidence 344455667788888877 45667999999999999999999999999996
No 122
>PRK06547 hypothetical protein; Provisional
Probab=83.59 E-value=0.87 Score=36.33 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=19.5
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++..+..+.---|+..|.+|||||+.-
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 444555555666777799999999865
No 123
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=83.43 E-value=0.39 Score=38.33 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=15.0
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
+.++.+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 57899999999999975
No 124
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=83.14 E-value=0.38 Score=43.74 Aligned_cols=51 Identities=22% Similarity=0.327 Sum_probs=29.2
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHH-hcc--c--cCeeEeeccCcCCCceeEec
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDA-AFE--G--YNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~--G--~n~~v~~yG~tgSGKT~Tl~ 70 (279)
+.||.+-+-+..-+++.+.+..|+... .+. | ....|+.||++|+|||+..-
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHH
Confidence 344444444444455555444444432 221 2 24469999999999998763
No 125
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=83.05 E-value=0.53 Score=41.82 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=21.6
Q ss_pred HHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 41 MDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 41 ~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
..++..++.+. ..|+..|+||||||.+|..
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~a 179 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTNA 179 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHHH
Confidence 35555555543 4588889999999999844
No 126
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=83.00 E-value=0.65 Score=45.52 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.1
Q ss_pred ccccCeeEeeccCcCCCceeEe
Q psy37 48 FEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 48 ~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
-.+.|.||+..|.+|||||.+.
T Consensus 81 ~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 81 RTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HHTSEEEEEEEESTTSSHHHHH
T ss_pred ccccccceeeccccccccccch
Confidence 3689999999999999999985
No 127
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=82.87 E-value=1.8 Score=38.37 Aligned_cols=47 Identities=51% Similarity=0.892 Sum_probs=42.4
Q ss_pred ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA 147 (279)
Q Consensus 101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~ 147 (279)
....+.++|+....+++..++++|+.+++.+++.++|+++++.|...
T Consensus 58 ~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~ 104 (333)
T cd01371 58 PNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVRE 104 (333)
T ss_pred CCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCC
Confidence 34678899999999999999999999999999999999999998654
No 128
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=82.44 E-value=0.78 Score=39.53 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=20.2
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
+++..+. .+--|+..|++|+|||-++..
T Consensus 25 ll~~l~~-~~~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 25 LLDLLLS-NGRPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp HHHHHHH-CTEEEEEESSTTSSHHHHHHH
T ss_pred HHHHHHH-cCCcEEEECCCCCchhHHHHh
Confidence 3444443 366789999999999998743
No 129
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=82.38 E-value=0.89 Score=44.42 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=26.0
Q ss_pred HHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 33 EQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 33 ~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
-.||.-.-...-.-+-.|.|.||+.-|.+|||||.|.
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 3455544332222233799999999999999999976
No 130
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=82.25 E-value=0.25 Score=44.45 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=16.3
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
...|+.||++|+|||++.-.
T Consensus 156 p~gvLL~GppGtGKT~laka 175 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKA 175 (364)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34599999999999988743
No 131
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=82.06 E-value=0.62 Score=36.86 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=18.7
Q ss_pred HHHhccccCeeEeeccCcCCCceeEecC
Q psy37 44 VDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 44 v~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
+..+.++. ..++..|++|||||.++..
T Consensus 17 ~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 17 IEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 34444432 5667889999999997754
No 132
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.97 E-value=0.52 Score=41.23 Aligned_cols=19 Identities=42% Similarity=0.572 Sum_probs=15.8
Q ss_pred cccCeeEeeccCcCCCcee
Q psy37 49 EGYNACVFAYGQTGSGKTF 67 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~ 67 (279)
+=.-+.|+..|+||||||+
T Consensus 94 EL~KSNILLiGPTGsGKTl 112 (408)
T COG1219 94 ELSKSNILLIGPTGSGKTL 112 (408)
T ss_pred eeeeccEEEECCCCCcHHH
Confidence 3445789999999999997
No 133
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=81.85 E-value=0.61 Score=41.99 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=28.2
Q ss_pred CHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeE
Q psy37 31 SQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
.|+++...- +|+=.-+-.|.-.+.|.||+.|+|||..
T Consensus 28 GQ~HLlg~~-~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 28 GQEHLLGEG-KPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred ChHhhhCCC-chHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 678877663 3555455578889999999999999963
No 134
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=81.74 E-value=0.68 Score=40.55 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=17.3
Q ss_pred ccc-CeeEeeccCcCCCceeEecC
Q psy37 49 EGY-NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 49 ~G~-n~~v~~yG~tgSGKT~Tl~G 71 (279)
+|. ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 454 45666699999999998744
No 135
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=81.63 E-value=2.2 Score=35.65 Aligned_cols=41 Identities=29% Similarity=0.356 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhHHHHHHHhcc--ccCeeEeeccCcCCCceeE
Q psy37 27 PQFASQEQVFNDLGMDVVDAAFE--GYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 27 ~~~~~q~~vy~~~~~~lv~~v~~--G~n~~v~~yG~tgSGKT~T 68 (279)
++-..|+++-+.. +.+++.+.. ..-..++-||+.|.|||..
T Consensus 24 ~efiGQ~~l~~~l-~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 24 DEFIGQEHLKGNL-KILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCS-S-HHHHHHH-HHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHccCcHHHHhhh-HHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 4556899998775 367777653 3345789999999999863
No 136
>PLN03025 replication factor C subunit; Provisional
Probab=81.50 E-value=0.7 Score=40.70 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=17.7
Q ss_pred cccCeeEeeccCcCCCceeEecC
Q psy37 49 EGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.|.-..++-||+.|+|||++...
T Consensus 31 ~~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 31 DGNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred cCCCceEEEECCCCCCHHHHHHH
Confidence 44445578899999999998753
No 137
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=81.43 E-value=1.1 Score=43.83 Aligned_cols=21 Identities=38% Similarity=0.635 Sum_probs=19.7
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|.|.||+.-|.+|||||.|.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 699999999999999999975
No 138
>KOG1803|consensus
Probab=81.38 E-value=1.5 Score=41.43 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=19.9
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
..|...++-. --.+-.|+.|+|||||+.
T Consensus 192 ~Av~~~~~~k-~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 192 AAVSFAINNK-DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred HHHHHHhccC-CceEeeCCCCCCceeeHH
Confidence 3444444444 556779999999999983
No 139
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=81.37 E-value=2.2 Score=38.00 Aligned_cols=46 Identities=57% Similarity=0.778 Sum_probs=41.8
Q ss_pred ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
......++|+..+.+++..++.+|+.+++.+++.++|+++++.|..
T Consensus 50 ~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~ 95 (341)
T cd01372 50 PSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAF 95 (341)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCcEEecCCC
Confidence 3467889999999999999999999999999999999999998864
No 140
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=81.24 E-value=1.3 Score=33.39 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=17.3
Q ss_pred HHHHHhccc----cCeeEeeccCcCCCceeE
Q psy37 42 DVVDAAFEG----YNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 42 ~lv~~v~~G----~n~~v~~yG~tgSGKT~T 68 (279)
+.|...+.. -.-.+--.|+||+||||+
T Consensus 39 ~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v 69 (127)
T PF06309_consen 39 NAIKGHLANPNPRKPLVLSFHGWTGTGKNFV 69 (127)
T ss_pred HHHHHHHcCCCCCCCEEEEeecCCCCcHHHH
Confidence 445455533 222455679999999995
No 141
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=81.13 E-value=1.2 Score=43.38 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.6
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|.|.||+.-|.+|||||.|.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 89 DEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred cCCCceEEEecCCCCCcchHH
Confidence 699999999999999999975
No 142
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=81.08 E-value=1.3 Score=43.27 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=19.7
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|.|.||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 83 EKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 699999999999999999975
No 143
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=80.68 E-value=1.2 Score=43.69 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=19.7
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|.|.||+.-|.+|||||.|.
T Consensus 91 ~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 91 KKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 699999999999999999976
No 144
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=80.63 E-value=1.1 Score=40.56 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=24.3
Q ss_pred HHHHHHHhHHHHHHHhccc----cCeeEeeccCcCCCceeEe
Q psy37 32 QEQVFNDLGMDVVDAAFEG----YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 32 q~~vy~~~~~~lv~~v~~G----~n~~v~~yG~tgSGKT~Tl 69 (279)
....|.+...-++..+.+- ...-|.-.||||-|||.|+
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 179 DLRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred hhhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence 3334444443344444433 2667888999999999998
No 145
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=80.49 E-value=0.39 Score=39.24 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=13.6
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
..++.+|++|||||.+|.
T Consensus 39 ~h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLR 56 (205)
T ss_dssp -SEEEE--TTSSHHHHHH
T ss_pred ceEEEEcCCCCCccHHHH
Confidence 378999999999999884
No 146
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=80.46 E-value=0.45 Score=42.43 Aligned_cols=29 Identities=28% Similarity=0.265 Sum_probs=20.9
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.++..++. ....|+..|+||||||.+|..
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHHHH
Confidence 45555554 244588889999999998854
No 147
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.23 E-value=0.52 Score=42.47 Aligned_cols=20 Identities=35% Similarity=0.368 Sum_probs=17.0
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
...++..|++|+|||+|+.-
T Consensus 137 g~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 46888999999999999843
No 148
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=80.13 E-value=1.2 Score=43.70 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.6
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 83 DRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 699999999999999999875
No 149
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=80.13 E-value=1.1 Score=39.04 Aligned_cols=40 Identities=30% Similarity=0.318 Sum_probs=25.6
Q ss_pred CCHHHHHHHhHHHHHHHhc--cccCeeEeeccCcCCCceeEec
Q psy37 30 ASQEQVFNDLGMDVVDAAF--EGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 30 ~~q~~vy~~~~~~lv~~v~--~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
..|+++-+.+. ..+.... .+....++-||++|+|||+...
T Consensus 7 iG~~~~~~~l~-~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 7 IGQEKVKEQLQ-LFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred cCHHHHHHHHH-HHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 46777766543 3443332 2323457889999999999774
No 150
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=80.12 E-value=1.1 Score=43.79 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.9
Q ss_pred ccccCeeEeeccCcCCCceeEe
Q psy37 48 FEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 48 ~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
-.+.|.||+.-|.+|||||.+.
T Consensus 87 ~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 87 QDRENQSILITGESGAGKTENT 108 (693)
T ss_pred hcCCCceEEEEcCCCCCchHHH
Confidence 3699999999999999999865
No 151
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=80.07 E-value=1.4 Score=42.94 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=19.7
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|.|.||+.-|.+|||||.|.
T Consensus 84 ~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 84 AKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 799999999999999999975
No 152
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=80.05 E-value=1.3 Score=43.17 Aligned_cols=21 Identities=43% Similarity=0.697 Sum_probs=19.8
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|.|.||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 83 ENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred cCCCceEEEEcCCCCCcchHH
Confidence 699999999999999999976
No 153
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=79.99 E-value=1.7 Score=39.19 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=35.8
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhcc----ccCeeEeeccCcCCCceeEe
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFE----GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~----G~n~~v~~yG~tgSGKT~Tl 69 (279)
.++||.+.+.-.--..+.+.++..+.++.+. -..--+..||+.|+|||+..
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 3666666555555666777777677777763 34456888999999999863
No 154
>KOG2543|consensus
Probab=79.78 E-value=0.58 Score=41.86 Aligned_cols=20 Identities=35% Similarity=0.702 Sum_probs=16.4
Q ss_pred cCeeEeeccCcCCCceeEec
Q psy37 51 YNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl~ 70 (279)
+.+.|+-||.+||||||++-
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r 48 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVR 48 (438)
T ss_pred cceeEEEeccCCCchhHHHH
Confidence 44557999999999999873
No 155
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=79.49 E-value=1.3 Score=43.62 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=20.1
Q ss_pred ccccCeeEeeccCcCCCceeEe
Q psy37 48 FEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 48 ~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
-.|.|.||+.-|.+|||||.|.
T Consensus 87 ~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 87 VLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred hcCCCCeEEEecCCCCChhHHH
Confidence 3799999999999999999975
No 156
>KOG0240|consensus
Probab=79.46 E-value=2.5 Score=39.58 Aligned_cols=52 Identities=48% Similarity=0.673 Sum_probs=46.6
Q ss_pred CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37 96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA 147 (279)
Q Consensus 96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~ 147 (279)
+..+...+.++++|......++..++.+||-.|+.+++.++|+++.+.|...
T Consensus 54 DrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~ 105 (607)
T KOG0240|consen 54 DRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGH 105 (607)
T ss_pred eeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCC
Confidence 4445566789999999999999999999999999999999999999998776
No 157
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=79.01 E-value=2.6 Score=37.22 Aligned_cols=46 Identities=50% Similarity=0.842 Sum_probs=42.1
Q ss_pred cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37 102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA 147 (279)
Q Consensus 102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~ 147 (279)
.....++|+..+.+++..++++++.+++.+++.++|+++++.|...
T Consensus 54 ~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~ 99 (325)
T cd01369 54 NTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPG 99 (325)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCC
Confidence 3578899999999999999999999999999999999999998765
No 158
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=78.98 E-value=0.66 Score=42.28 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=31.7
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHH-hcc--c--cCeeEeeccCcCCCceeEec
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDA-AFE--G--YNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~--G--~n~~v~~yG~tgSGKT~Tl~ 70 (279)
..|+.|-+.+.--+++-+.+..|+... .+. | ....|+.||++|+|||+..-
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 345555555555555655555555432 222 3 34579999999999999763
No 159
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=78.86 E-value=1.4 Score=43.17 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.6
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 83 DEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 799999999999999999865
No 160
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=78.76 E-value=1 Score=36.78 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=19.3
Q ss_pred HHhcccc---CeeEeeccCcCCCceeEe
Q psy37 45 DAAFEGY---NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 45 ~~v~~G~---n~~v~~yG~tgSGKT~Tl 69 (279)
|.++.|- ...+.-+|++|||||.-.
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4556554 678999999999998754
No 161
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=78.76 E-value=2.4 Score=37.42 Aligned_cols=45 Identities=49% Similarity=0.839 Sum_probs=41.2
Q ss_pred cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
..+.+++|+....+++..++.+++.+++.+++.++|+++++.|..
T Consensus 51 ~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~ 95 (321)
T cd01374 51 ESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDE 95 (321)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCC
Confidence 367889999999999999999999999999999999999999864
No 162
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=78.66 E-value=0.73 Score=39.91 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=18.0
Q ss_pred cccCeeEeeccCcCCCceeE
Q psy37 49 EGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~T 68 (279)
+|++-+||..|++|+|||.-
T Consensus 1 kg~~fnImVvG~sG~GKTTF 20 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTF 20 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHH
T ss_pred CCceEEEEEECCCCCCHHHH
Confidence 48899999999999999973
No 163
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=78.60 E-value=0.66 Score=33.74 Aligned_cols=15 Identities=33% Similarity=0.713 Sum_probs=13.3
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|..||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 568999999999876
No 164
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=78.55 E-value=1.3 Score=41.01 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=18.9
Q ss_pred HHHHhccccCeeEeeccCcCCCceeE
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
.+..+++|.| ++..++||||||.+
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4555678887 77788999999965
No 165
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=78.47 E-value=0.75 Score=39.24 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=16.5
Q ss_pred cCeeEeeccCcCCCceeEec
Q psy37 51 YNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl~ 70 (279)
....++-||++|+|||++..
T Consensus 41 ~~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred CcceEEEEcCCCCCHHHHHH
Confidence 34568899999999999873
No 166
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=78.46 E-value=0.6 Score=39.62 Aligned_cols=14 Identities=50% Similarity=0.722 Sum_probs=12.2
Q ss_pred eeccCcCCCceeEe
Q psy37 56 FAYGQTGSGKTFTM 69 (279)
Q Consensus 56 ~~yG~tgSGKT~Tl 69 (279)
+..|++|||||.||
T Consensus 31 vliGpSGsGKTTtL 44 (309)
T COG1125 31 VLIGPSGSGKTTTL 44 (309)
T ss_pred EEECCCCCcHHHHH
Confidence 45699999999997
No 167
>PRK13764 ATPase; Provisional
Probab=78.34 E-value=0.77 Score=43.99 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.1
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
...|+..|+||||||+++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 44589999999999999865
No 168
>PRK14974 cell division protein FtsY; Provisional
Probab=77.78 E-value=2.3 Score=37.83 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=16.6
Q ss_pred CeeEeeccCcCCCceeEec
Q psy37 52 NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~ 70 (279)
...|+..|.+|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4689999999999999873
No 169
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=77.72 E-value=1.5 Score=38.70 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.9
Q ss_pred CeeEeeccCcCCCceeEec
Q psy37 52 NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~ 70 (279)
...|...|++|+|||.|+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIG 132 (318)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4577788999999999873
No 170
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=77.59 E-value=1.6 Score=36.37 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=23.6
Q ss_pred HHHHHHhccc---cCeeEeeccCcCCCceeEe
Q psy37 41 MDVVDAAFEG---YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 41 ~~lv~~v~~G---~n~~v~~yG~tgSGKT~Tl 69 (279)
-+-+|.++.| ....+.-+|++|||||.-+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 3668888876 5668899999999999855
No 171
>PRK10536 hypothetical protein; Provisional
Probab=77.53 E-value=1.2 Score=37.89 Aligned_cols=18 Identities=39% Similarity=0.698 Sum_probs=15.8
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
.-|+..|++|+||||...
T Consensus 75 ~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 75 QLIFATGEAGCGKTWISA 92 (262)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 489999999999999764
No 172
>PHA01747 putative ATP-dependent protease
Probab=77.39 E-value=1.5 Score=39.33 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=25.2
Q ss_pred HHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 41 MDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 41 ~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|+|+.-..+.|..++=.|+.|+||||+.
T Consensus 179 iPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 179 LPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 37787666889999999999999999975
No 173
>PTZ00424 helicase 45; Provisional
Probab=77.19 E-value=1.5 Score=39.71 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=20.2
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
..+..+++|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 466777889885 45689999999754
No 174
>PRK04328 hypothetical protein; Provisional
Probab=77.10 E-value=1.6 Score=36.99 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=22.5
Q ss_pred HHHHHHhccc---cCeeEeeccCcCCCcee
Q psy37 41 MDVVDAAFEG---YNACVFAYGQTGSGKTF 67 (279)
Q Consensus 41 ~~lv~~v~~G---~n~~v~~yG~tgSGKT~ 67 (279)
-+-+|.++.| ..+.++.+|++|+|||.
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 3568888876 57889999999999975
No 175
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=76.90 E-value=1.8 Score=35.05 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=18.2
Q ss_pred HHHHhccccCeeEeeccCcCCCceeE
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
.++.+++|.| ++..++||+|||.+
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHH
Confidence 4455556776 67888999999987
No 176
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=76.86 E-value=1.4 Score=39.18 Aligned_cols=24 Identities=33% Similarity=0.689 Sum_probs=21.7
Q ss_pred cccCeeEeeccCcCCCcee---EecCC
Q psy37 49 EGYNACVFAYGQTGSGKTF---TMMGS 72 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~---Tl~G~ 72 (279)
.|+.-+||+.|++|+|||. ||+|.
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHh
Confidence 6999999999999999997 66775
No 177
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=76.72 E-value=1 Score=34.13 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=13.7
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+.+|++|+|||..+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999876
No 178
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=76.64 E-value=1 Score=33.27 Aligned_cols=15 Identities=40% Similarity=0.392 Sum_probs=12.9
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+-.|.+|||||...
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 577899999999865
No 179
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=76.61 E-value=1.4 Score=43.01 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=21.0
Q ss_pred HHHHHHHhcc-----ccCeeEeeccCcCCCceeEecC
Q psy37 40 GMDVVDAAFE-----GYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 40 ~~~lv~~v~~-----G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
+..+++.+.+ |.+..++.. +||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 3456666655 445555554 899999999964
No 180
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=76.25 E-value=0.71 Score=40.18 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=14.3
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
...+.||+|||||++-|
T Consensus 88 ~I~~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 88 FIGVVYGPTGSGKSQLL 104 (369)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45677999999999966
No 181
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=76.10 E-value=1.5 Score=38.21 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=17.0
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|....++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 455556899999999999876
No 182
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=76.05 E-value=3.2 Score=38.36 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=17.0
Q ss_pred cCeeEeeccCcCCCceeEec
Q psy37 51 YNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl~ 70 (279)
....|+.+|.+|+|||.|..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 35678899999999999884
No 183
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=75.82 E-value=0.82 Score=37.25 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=15.5
Q ss_pred ccCeeEeeccCcCCCceeEec
Q psy37 50 GYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.....++.-|+.|||||+.+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHH
Confidence 445678899999999998763
No 184
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=75.71 E-value=3 Score=33.54 Aligned_cols=38 Identities=61% Similarity=1.210 Sum_probs=34.6
Q ss_pred HHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 108 VFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 108 i~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
+|+... +++..++++|+.+++.+++.++++++++.|..
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~ 45 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR 45 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCC
Confidence 677777 88889999999999999999999999999875
No 185
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=75.70 E-value=1.8 Score=39.87 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=20.0
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeE
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
..|..+++|.| +++.++||||||.+
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHH
Confidence 34566678887 88889999999976
No 186
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=75.58 E-value=1.8 Score=36.23 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=22.9
Q ss_pred HHHHHHhcccc---CeeEeeccCcCCCceeEe
Q psy37 41 MDVVDAAFEGY---NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 41 ~~lv~~v~~G~---n~~v~~yG~tgSGKT~Tl 69 (279)
-|-+|.++.|- .+.++.+|.+|||||+-.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 36788888654 678888899999998754
No 187
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=75.51 E-value=7.8 Score=34.29 Aligned_cols=43 Identities=63% Similarity=1.024 Sum_probs=39.9
Q ss_pred ccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37 103 ASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145 (279)
Q Consensus 103 ~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~ 145 (279)
....++|+....+++..++++++.+++.+++.++|+++.+.|.
T Consensus 58 ~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~ 100 (335)
T smart00129 58 ASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGT 100 (335)
T ss_pred CChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCC
Confidence 5678899999899999999999999999999999999999985
No 188
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=74.91 E-value=2 Score=42.61 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.6
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|.|.||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 83 TRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred cCCCceEEEecCCCCCcHHHH
Confidence 699999999999999999875
No 189
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=74.69 E-value=1.7 Score=36.67 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=23.4
Q ss_pred HHHHhccccCee-EeeccCcCCCceeEecC
Q psy37 43 VVDAAFEGYNAC-VFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 43 lv~~v~~G~n~~-v~~yG~tgSGKT~Tl~G 71 (279)
-..++++|..+. ++.||..|+|||-++-+
T Consensus 42 Nt~~Fl~G~pannvLL~G~rGtGKSSlVka 71 (249)
T PF05673_consen 42 NTEQFLQGLPANNVLLWGARGTGKSSLVKA 71 (249)
T ss_pred HHHHHHcCCCCcceEEecCCCCCHHHHHHH
Confidence 335788888774 88899999999998854
No 190
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=74.58 E-value=2.1 Score=37.14 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=23.7
Q ss_pred HHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 37 NDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 37 ~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
...+.|++ ..+.--+..|-.||+|++|||.++
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 34444555 455666778899999999999876
No 191
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=74.52 E-value=2.4 Score=35.14 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=23.6
Q ss_pred HHHHHHHhcccc---CeeEeeccCcCCCceeEe
Q psy37 40 GMDVVDAAFEGY---NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 40 ~~~lv~~v~~G~---n~~v~~yG~tgSGKT~Tl 69 (279)
+-|-+|.++.|- ...+..+|++|+|||...
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 346688888654 567899999999998765
No 192
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=74.34 E-value=1.5 Score=42.66 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=19.5
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.|..++... ..++..|+.|+|||+|+..
T Consensus 165 Av~~~l~~~-~~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 165 AVSFALSSK-DLFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred HHHHHhcCC-CeEEEEcCCCCCHHHHHHH
Confidence 344444432 3467999999999999864
No 193
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=74.12 E-value=1.7 Score=41.07 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=20.9
Q ss_pred HHHHHHhccccC--eeEeeccCcCCCceeEe
Q psy37 41 MDVVDAAFEGYN--ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 41 ~~lv~~v~~G~n--~~v~~yG~tgSGKT~Tl 69 (279)
+.-++..+.|.. ..++.+||+|+|||.|+
T Consensus 32 ~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 32 RSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 344455454443 46888999999999998
No 194
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=74.09 E-value=1.4 Score=41.49 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.4
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
-.++.||++|+|||+..-
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 368999999999999763
No 195
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=74.05 E-value=2.2 Score=39.60 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=19.9
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeE
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
..|..+++|.| +++..+||||||.+
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla 54 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAG 54 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHH
Confidence 34566788987 77788999999976
No 196
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.01 E-value=1.3 Score=39.31 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHhHHHHHHHh-c--cccCe--eEeeccCcCCCceeE
Q psy37 27 PQFASQEQVFNDLGMDVVDAA-F--EGYNA--CVFAYGQTGSGKTFT 68 (279)
Q Consensus 27 ~~~~~q~~vy~~~~~~lv~~v-~--~G~n~--~v~~yG~tgSGKT~T 68 (279)
+-+..-++|.+.+-.|+.+.= + =|+.. -|+.||+.|+|||-.
T Consensus 155 GL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLL 201 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLL 201 (406)
T ss_pred CHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHH
Confidence 334446677777776766542 2 26554 699999999999853
No 197
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=73.98 E-value=1.8 Score=37.97 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=22.4
Q ss_pred HHHHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 40 GMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 40 ~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
+.++++..+.+. ..++..|++|||||..|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 346676777654 577788999999999763
No 198
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=73.94 E-value=2.2 Score=39.10 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=18.9
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+..+++|.| |++.++||||||.+.
T Consensus 38 aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCc--EEEECCCCchHHHHH
Confidence 4556688987 556679999999753
No 199
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=73.81 E-value=1.4 Score=45.50 Aligned_cols=28 Identities=39% Similarity=0.458 Sum_probs=19.1
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
+++.+-+|....++. -+||||||+|+.+
T Consensus 425 i~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 425 VEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHhccCCeEEE-eCCCCCHHHHHHH
Confidence 344444666554444 8999999999865
No 200
>PHA02624 large T antigen; Provisional
Probab=73.80 E-value=2.4 Score=40.55 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=23.1
Q ss_pred HHHHHhccccCe--eEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNA--CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~--~v~~yG~tgSGKT~Tl 69 (279)
.+++.++.|... |++-||+.|||||+-.
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 456677788777 9999999999999854
No 201
>PRK13342 recombination factor protein RarA; Reviewed
Probab=73.74 E-value=1.7 Score=39.90 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=24.7
Q ss_pred CHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 31 SQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.|+++... ..++...+-.+.-..++.||++|+|||+...
T Consensus 16 Gq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 45555443 1223333345555678889999999998764
No 202
>PF13173 AAA_14: AAA domain
Probab=73.61 E-value=0.96 Score=33.93 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=15.1
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
-.++-+|+.++|||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLL 19 (128)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46788999999999987
No 203
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=73.28 E-value=1.8 Score=35.47 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=14.0
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|++.|++|+|||..+
T Consensus 33 ~vv~lGpSGcGKTTLL 48 (259)
T COG4525 33 LVVVLGPSGCGKTTLL 48 (259)
T ss_pred EEEEEcCCCccHHHHH
Confidence 6789999999999855
No 204
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=73.27 E-value=1.1 Score=41.41 Aligned_cols=17 Identities=41% Similarity=0.677 Sum_probs=14.7
Q ss_pred eEeeccCcCCCceeEec
Q psy37 54 CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~ 70 (279)
.|+.||++|+|||.+.-
T Consensus 219 gVLL~GPPGTGKT~LAr 235 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAK 235 (438)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58889999999999863
No 205
>KOG1547|consensus
Probab=73.24 E-value=4.2 Score=34.28 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=19.0
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|+.-.||..||+|.|||..+
T Consensus 43 ~GF~FNIMVVgqSglgkstli 63 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLI 63 (336)
T ss_pred ccCceEEEEEecCCCCchhhH
Confidence 799999999999999998643
No 206
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=73.21 E-value=4.5 Score=36.24 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=24.9
Q ss_pred CCCCCCCCHHHHHHHhHHHHHHHhccc---cCeeEeeccCcCCCcee
Q psy37 24 PSSPQFASQEQVFNDLGMDVVDAAFEG---YNACVFAYGQTGSGKTF 67 (279)
Q Consensus 24 ~vf~~~~~q~~vy~~~~~~lv~~v~~G---~n~~v~~yG~tgSGKT~ 67 (279)
.+|+ +++.-..++ .-+.....| .+-.++-.|+.|+|||.
T Consensus 52 ~~~G----~~~~i~~lv-~~l~~~a~g~~~~r~il~L~GPPGsGKSt 93 (361)
T smart00763 52 DFFG----MEEAIERFV-NYFKSAAQGLEERKQILYLLGPVGGGKSS 93 (361)
T ss_pred hccC----cHHHHHHHH-HHHHHHHhcCCCCCcEEEEECCCCCCHHH
Confidence 5664 555555555 233333333 45678999999999996
No 207
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=72.90 E-value=2 Score=37.70 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.4
Q ss_pred ccccCeeEeeccCcCCCceeEecC
Q psy37 48 FEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 48 ~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
-..-+.-++.+|+.|||||.+|.-
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~q 42 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLAQ 42 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHHH
Confidence 356778899999999999999854
No 208
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=72.75 E-value=1.9 Score=38.95 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=14.2
Q ss_pred EeeccCcCCCceeEec
Q psy37 55 VFAYGQTGSGKTFTMM 70 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl~ 70 (279)
++.+|+||||||.++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 6789999999999874
No 209
>PHA02653 RNA helicase NPH-II; Provisional
Probab=72.27 E-value=3.1 Score=40.66 Aligned_cols=33 Identities=30% Similarity=0.241 Sum_probs=22.0
Q ss_pred CCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeE
Q psy37 30 ASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 30 ~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
+-|.+|=+. ++..+.+|. .|+..|+||||||..
T Consensus 163 ~~~~~iQ~q----il~~i~~gk--dvIv~A~TGSGKTtq 195 (675)
T PHA02653 163 SLQPDVQLK----IFEAWISRK--PVVLTGGTGVGKTSQ 195 (675)
T ss_pred chhHHHHHH----HHHHHHhCC--CEEEECCCCCCchhH
Confidence 345555443 344456665 458899999999975
No 210
>PRK04195 replication factor C large subunit; Provisional
Probab=72.24 E-value=2.3 Score=39.88 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=21.2
Q ss_pred HHHHHhcccc-CeeEeeccCcCCCceeEec
Q psy37 42 DVVDAAFEGY-NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 42 ~lv~~v~~G~-n~~v~~yG~tgSGKT~Tl~ 70 (279)
..+.....|. ...++.||++|+|||++..
T Consensus 28 ~~l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 28 EWIESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 4444444554 5678999999999998763
No 211
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=72.12 E-value=1.4 Score=35.05 Aligned_cols=15 Identities=47% Similarity=0.680 Sum_probs=13.0
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+.+|+.|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999863
No 212
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=71.91 E-value=1.7 Score=42.81 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=18.3
Q ss_pred cccCeeEeeccCcCCCceeEec
Q psy37 49 EGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.+.-..++-||++|+|||++..
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 4556688999999999998764
No 213
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.89 E-value=2.3 Score=39.65 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=19.5
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
..|..+++|.| +++..+||||||.+.
T Consensus 18 ~ai~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 45667788987 455579999999753
No 214
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=71.65 E-value=3.1 Score=38.43 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=17.0
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++..+..|- .|+.||++|+|||+..
T Consensus 187 l~~~L~~~~--~iil~GppGtGKT~lA 211 (459)
T PRK11331 187 ILKRLTIKK--NIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHhcCC--CEEEECCCCCCHHHHH
Confidence 333344443 5566999999999876
No 215
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=71.53 E-value=1.2 Score=40.94 Aligned_cols=19 Identities=42% Similarity=0.482 Sum_probs=15.7
Q ss_pred eeEeeccCcCCCceeEecC
Q psy37 53 ACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~G 71 (279)
..++..|++|+|||+|+..
T Consensus 222 ~~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAK 240 (424)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3677789999999999743
No 216
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=71.47 E-value=2 Score=27.98 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.1
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
..+-.|++|||||..|
T Consensus 25 ~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLL 40 (62)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999765
No 217
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=71.25 E-value=3 Score=40.62 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=19.6
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 83 YNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 589999999999999999976
No 218
>PRK05580 primosome assembly protein PriA; Validated
Probab=71.19 E-value=2.5 Score=41.39 Aligned_cols=38 Identities=24% Similarity=0.149 Sum_probs=24.3
Q ss_pred CCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 25 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 25 vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
-+.....|+++++.+... . ....++.+|+||||||...
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~----~---~~~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAA----A---GFSPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CCCCCHHHHHHHHHHHhc----c---CCCcEEEECCCCChHHHHH
Confidence 344455666665554322 1 2345899999999999765
No 219
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=71.01 E-value=1.3 Score=32.44 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=14.3
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..+...|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45778899999999866
No 220
>KOG0926|consensus
Probab=70.88 E-value=2.2 Score=41.92 Aligned_cols=18 Identities=50% Similarity=0.713 Sum_probs=15.8
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
|-.|+.+|+||||||.-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 557888999999999987
No 221
>PHA02244 ATPase-like protein
Probab=70.81 E-value=4.1 Score=36.72 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=17.6
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.+...+-.|.+ |+..|++|+|||+...
T Consensus 111 ri~r~l~~~~P--VLL~GppGtGKTtLA~ 137 (383)
T PHA02244 111 DIAKIVNANIP--VFLKGGAGSGKNHIAE 137 (383)
T ss_pred HHHHHHhcCCC--EEEECCCCCCHHHHHH
Confidence 33333334554 5568999999998653
No 222
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=70.78 E-value=3.5 Score=37.58 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=15.9
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
..|+..|++|+|||.|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 578899999999999983
No 223
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=70.78 E-value=3.2 Score=41.23 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=21.6
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEec
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.+..+.+|.|+.|+| +||||||-+-|
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAAf 55 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAAF 55 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHHH
Confidence 455668999999998 99999998753
No 224
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=70.77 E-value=1.5 Score=33.62 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=12.8
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998864
No 225
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=70.69 E-value=1.7 Score=36.13 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=17.0
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
...++.||++|+|||+..-.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 45699999999999998754
No 226
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=70.56 E-value=3.2 Score=34.11 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=21.9
Q ss_pred HHHHHhcc-cc--CeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFE-GY--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~-G~--n~~v~~yG~tgSGKT~Tl 69 (279)
+-+|.++. |+ ...+..+|++|||||...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 56788886 44 446889999999999864
No 227
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=70.46 E-value=1.6 Score=33.43 Aligned_cols=16 Identities=44% Similarity=0.810 Sum_probs=13.6
Q ss_pred EeeccCcCCCceeEec
Q psy37 55 VFAYGQTGSGKTFTMM 70 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl~ 70 (279)
++.+|++|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 5679999999999763
No 228
>PRK00131 aroK shikimate kinase; Reviewed
Probab=70.38 E-value=1.8 Score=33.98 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.7
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
-.|+.+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 37899999999999874
No 229
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=70.38 E-value=2 Score=38.36 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=23.5
Q ss_pred HHHHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 40 GMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 40 ~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
..+++..++.+. ..|+..|+||||||.+|.
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 346777777654 789999999999998774
No 230
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=70.29 E-value=12 Score=35.99 Aligned_cols=51 Identities=47% Similarity=0.727 Sum_probs=44.5
Q ss_pred CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
+..+.....+.++|......+..+++..||.+++++++.++++++.+.|..
T Consensus 61 dkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~ 111 (568)
T COG5059 61 DKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTE 111 (568)
T ss_pred eeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCc
Confidence 344444556889999999999999999999999999999999999999876
No 231
>PRK07261 topology modulation protein; Provisional
Probab=70.14 E-value=1.9 Score=34.19 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=12.9
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|++|||||.-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999755
No 232
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=70.03 E-value=6.2 Score=34.79 Aligned_cols=44 Identities=52% Similarity=0.940 Sum_probs=40.8
Q ss_pred ccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 103 ASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 103 ~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
....++|+....+++..++.+++.+++.+++.++|+++++.|..
T Consensus 57 ~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~ 100 (328)
T cd00106 57 STQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSP 100 (328)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCC
Confidence 67889999999999999999999999999999999999999954
No 233
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=69.96 E-value=2.5 Score=37.75 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=29.0
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.|.|+.|- .|+++=... +..+.+-.-+.|+.+|.+|+|||+.+-+
T Consensus 13 ~~pf~~iv----Gq~~~k~al----~~~~~~p~~~~vli~G~~GtGKs~~ar~ 57 (350)
T CHL00081 13 VFPFTAIV----GQEEMKLAL----ILNVIDPKIGGVMIMGDRGTGKSTTIRA 57 (350)
T ss_pred CCCHHHHh----ChHHHHHHH----HHhccCCCCCeEEEEcCCCCCHHHHHHH
Confidence 45666555 566654444 4444443335688999999999998743
No 234
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=69.70 E-value=3.3 Score=38.88 Aligned_cols=42 Identities=19% Similarity=0.378 Sum_probs=30.1
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCce
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT 66 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT 66 (279)
-|+||.+.+++..-.++-+ ++ .-.-+.+++|+-.|.||+||-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~-----~a-kr~A~tdstVLi~GESGTGKE 282 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLE-----LA-KRIAKTDSTVLILGESGTGKE 282 (560)
T ss_pred ccchhhhccCCHHHHHHHH-----HH-HhhcCCCCcEEEecCCCccHH
Confidence 3688888876655444322 22 235789999999999999995
No 235
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=69.70 E-value=1.5 Score=34.30 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=11.4
Q ss_pred EeeccCcCCCceeE
Q psy37 55 VFAYGQTGSGKTFT 68 (279)
Q Consensus 55 v~~yG~tgSGKT~T 68 (279)
|+..|++|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 45679999999865
No 236
>CHL00181 cbbX CbbX; Provisional
Probab=69.57 E-value=1.7 Score=37.74 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=14.0
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.++-+|++|+|||+..
T Consensus 61 ~ill~G~pGtGKT~lA 76 (287)
T CHL00181 61 HMSFTGSPGTGKTTVA 76 (287)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3788999999999975
No 237
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=69.50 E-value=3.1 Score=40.29 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=27.9
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.||.+++ |+...+. ++..+..+....++-+|++|+|||+..
T Consensus 152 ~~~~iiG----qs~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 152 AFSEIVG----QERAIKA----LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cHHhcee----CcHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 4555553 4444443 344555677788999999999999865
No 238
>PRK08118 topology modulation protein; Reviewed
Probab=69.38 E-value=2.1 Score=33.90 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=12.2
Q ss_pred EeeccCcCCCceeE
Q psy37 55 VFAYGQTGSGKTFT 68 (279)
Q Consensus 55 v~~yG~tgSGKT~T 68 (279)
|+..|++|||||..
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999963
No 239
>PTZ00014 myosin-A; Provisional
Probab=69.16 E-value=3.4 Score=41.26 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.9
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+.|.||+.-|.+|||||.+.
T Consensus 180 ~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 180 VKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 699999999999999999643
No 240
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=69.14 E-value=4.4 Score=40.04 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=16.0
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
..|...|++|+|||.|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 578899999999999983
No 241
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=69.14 E-value=3.1 Score=36.78 Aligned_cols=39 Identities=33% Similarity=0.330 Sum_probs=23.8
Q ss_pred CHHHHHHHhHHHHHHHhc--cccCeeEeeccCcCCCceeEec
Q psy37 31 SQEQVFNDLGMDVVDAAF--EGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~--~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.|+++-+.+. .++.... .+....++.||++|+|||+...
T Consensus 29 G~~~~~~~l~-~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 29 GQEKVKENLK-IFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcHHHHHHHH-HHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 5555544432 3333332 2223468889999999999774
No 242
>PRK06696 uridine kinase; Validated
Probab=68.96 E-value=5.7 Score=32.92 Aligned_cols=21 Identities=33% Similarity=0.075 Sum_probs=16.6
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+....|..-|.+|||||+.-
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred CCCceEEEEECCCCCCHHHHH
Confidence 456667888899999999843
No 243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=68.96 E-value=2.6 Score=41.69 Aligned_cols=17 Identities=41% Similarity=0.716 Sum_probs=14.8
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+.||++|+|||+.+
T Consensus 213 ~giLL~GppGtGKT~la 229 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLA 229 (733)
T ss_pred ceEEEECCCCCChHHHH
Confidence 46999999999999865
No 244
>PF05729 NACHT: NACHT domain
Probab=68.93 E-value=1.5 Score=33.81 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=14.6
Q ss_pred eEeeccCcCCCceeEec
Q psy37 54 CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~ 70 (279)
.++.+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 36789999999999874
No 245
>KOG0745|consensus
Probab=68.92 E-value=2 Score=39.27 Aligned_cols=16 Identities=50% Similarity=0.756 Sum_probs=14.1
Q ss_pred CeeEeeccCcCCCcee
Q psy37 52 NACVFAYGQTGSGKTF 67 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~ 67 (279)
-+.|+..|+||||||+
T Consensus 226 KSNvLllGPtGsGKTl 241 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTL 241 (564)
T ss_pred cccEEEECCCCCchhH
Confidence 4678999999999997
No 246
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=68.81 E-value=3.9 Score=33.76 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=23.2
Q ss_pred HHHHHHhcccc---CeeEeeccCcCCCceeEec
Q psy37 41 MDVVDAAFEGY---NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 41 ~~lv~~v~~G~---n~~v~~yG~tgSGKT~Tl~ 70 (279)
-+-+|.++.|- ...+.-+|++|+|||..+.
T Consensus 5 ~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 5 SKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred cHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 46788888643 4578889999999998653
No 247
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=68.63 E-value=3.2 Score=40.31 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=19.7
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+|..++.|.+ |+..++||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4556678876 788889999999764
No 248
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=68.57 E-value=2.2 Score=30.99 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=13.2
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|+.|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678999999999876
No 249
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=68.36 E-value=2.7 Score=36.29 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=18.7
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488999999999999999754
No 250
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=68.18 E-value=3 Score=40.25 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=18.8
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeE
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
.+|..+++|.|+.+. .+||+|||.+
T Consensus 32 ~ai~~il~g~dvlv~--apTGsGKTl~ 56 (607)
T PRK11057 32 EIIDAVLSGRDCLVV--MPTGGGKSLC 56 (607)
T ss_pred HHHHHHHcCCCEEEE--cCCCchHHHH
Confidence 356667789886554 6999999974
No 251
>KOG0953|consensus
Probab=68.02 E-value=2.2 Score=40.09 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=14.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+-.|+|+|||||--
T Consensus 193 Ii~H~GPTNSGKTy~A 208 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRA 208 (700)
T ss_pred EEEEeCCCCCchhHHH
Confidence 5999999999999954
No 252
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=67.92 E-value=1.6 Score=40.81 Aligned_cols=18 Identities=39% Similarity=0.421 Sum_probs=16.0
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
..+...|++|+|||.|+-
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 578899999999999983
No 253
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=67.85 E-value=1.5 Score=39.20 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=12.7
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
+...|++|||||.+|
T Consensus 34 ~~lLGPSGcGKTTlL 48 (352)
T COG3842 34 VTLLGPSGCGKTTLL 48 (352)
T ss_pred EEEECCCCCCHHHHH
Confidence 446799999999987
No 254
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=67.51 E-value=2.1 Score=34.38 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=12.8
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+.+|+.|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998653
No 255
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=67.38 E-value=4.1 Score=35.67 Aligned_cols=30 Identities=33% Similarity=0.438 Sum_probs=23.2
Q ss_pred HHHHHHHhcccc---CeeEeeccCcCCCceeEe
Q psy37 40 GMDVVDAAFEGY---NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 40 ~~~lv~~v~~G~---n~~v~~yG~tgSGKT~Tl 69 (279)
..+-++.++.|- ...+..||++|||||...
T Consensus 80 g~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 80 GSKELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 336688888754 567789999999999754
No 256
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=67.34 E-value=2 Score=32.99 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.6
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
+|+.+|.+|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999998764
No 257
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=67.33 E-value=2.9 Score=34.65 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=17.0
Q ss_pred hccccCee------EeeccCcCCCceeEe
Q psy37 47 AFEGYNAC------VFAYGQTGSGKTFTM 69 (279)
Q Consensus 47 v~~G~n~~------v~~yG~tgSGKT~Tl 69 (279)
|++|+|.. +.-.|++|||||..|
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHH
Confidence 45666653 466899999999865
No 258
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.86 E-value=4.7 Score=37.70 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=17.7
Q ss_pred hccccC-eeEeeccCcCCCceeEe
Q psy37 47 AFEGYN-ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 47 v~~G~n-~~v~~yG~tgSGKT~Tl 69 (279)
+-.|.- ..++.||+.|+|||.+.
T Consensus 30 i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 30 LKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred HHcCCCCeEEEEECCCCCCHHHHH
Confidence 334544 46899999999999876
No 259
>PRK06217 hypothetical protein; Validated
Probab=66.85 E-value=2.1 Score=34.27 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=12.9
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|.+|||||..-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999753
No 260
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=66.77 E-value=1.6 Score=38.76 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=14.0
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|+|||.+|
T Consensus 31 f~vllGPSGcGKSTlL 46 (338)
T COG3839 31 FVVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999987
No 261
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=66.75 E-value=6.1 Score=32.91 Aligned_cols=39 Identities=23% Similarity=0.153 Sum_probs=24.2
Q ss_pred CHHHHHHHhHHHHHHHhcc-ccCeeEeeccCcCCCceeEe
Q psy37 31 SQEQVFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~-G~n~~v~~yG~tgSGKT~Tl 69 (279)
.-..+|..++..+....-. +..-.|.--|++|||||+.+
T Consensus 11 ~~~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 11 EIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 3445555555443333333 55556777799999999865
No 262
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=66.61 E-value=2.1 Score=37.12 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=14.3
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
-|+-+|++|+|||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5899999999999865
No 263
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.42 E-value=3.6 Score=37.01 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=22.6
Q ss_pred CHHHHHHHhHHHHHHHhccc-cCeeEeeccCcCCCceeEe
Q psy37 31 SQEQVFNDLGMDVVDAAFEG-YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G-~n~~v~~yG~tgSGKT~Tl 69 (279)
.|+++-+. +...+-.| ..-+++-+|+.|+|||.+.
T Consensus 20 Gq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 20 GQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred ChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 55555443 22233344 4557899999999999855
No 264
>CHL00176 ftsH cell division protein; Validated
Probab=66.38 E-value=2.9 Score=40.56 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.4
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
..|+.||++|+|||+..-
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999998753
No 265
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=66.26 E-value=2.4 Score=39.17 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=18.9
Q ss_pred eEeeccCcCCCceeEecCCCCCCCCCCCc
Q psy37 54 CVFAYGQTGSGKTFTMMGSKATTDNSPDA 82 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~ 82 (279)
.++.||+.|||||... ..-+||+|..
T Consensus 200 nLl~~GpPGtGKTmla---~Rl~~lLPpl 225 (490)
T COG0606 200 NLLLVGPPGTGKTMLA---SRLPGLLPPL 225 (490)
T ss_pred cEEEecCCCCchHHhh---hhhcccCCCC
Confidence 3788999999998875 3346666543
No 266
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=66.24 E-value=3.5 Score=39.69 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=19.9
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+|..+++|.|+ ++.-+||+|||.+.
T Consensus 20 ~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 20 EIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 456777899875 55569999999864
No 267
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=66.23 E-value=1.7 Score=34.47 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=14.8
Q ss_pred eEeeccCcCCCceeEec
Q psy37 54 CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~ 70 (279)
.|+..|++|||||..+.
T Consensus 3 ~~~i~G~sGsGKttl~~ 19 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLD 19 (179)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57889999999999873
No 268
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=66.14 E-value=5.2 Score=39.67 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=24.6
Q ss_pred CHHHHHHHhHHHHHHHhcccc------CeeEeeccCcCCCceeEe
Q psy37 31 SQEQVFNDLGMDVVDAAFEGY------NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G~------n~~v~~yG~tgSGKT~Tl 69 (279)
.|++.-+.+. ..|.....|. .++++-+|++|+|||+..
T Consensus 462 GQ~~ai~~l~-~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 462 GQDKAIEALT-EAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred CcHHHHHHHH-HHHHHHhccccCCCCCcceEEEECCCCCCHHHHH
Confidence 4555555444 3344333343 368999999999999865
No 269
>PRK10865 protein disaggregation chaperone; Provisional
Probab=65.98 E-value=4 Score=41.18 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=15.2
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
+.++-+|++|+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57889999999999975
No 270
>KOG0729|consensus
Probab=65.93 E-value=2.9 Score=35.77 Aligned_cols=20 Identities=40% Similarity=0.733 Sum_probs=16.3
Q ss_pred cccCe--eEeeccCcCCCceeE
Q psy37 49 EGYNA--CVFAYGQTGSGKTFT 68 (279)
Q Consensus 49 ~G~n~--~v~~yG~tgSGKT~T 68 (279)
-|.+- -|+.||+.|+|||..
T Consensus 206 lgidppkgvllygppgtgktl~ 227 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLC 227 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHH
Confidence 46665 599999999999864
No 271
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=65.92 E-value=2 Score=40.38 Aligned_cols=17 Identities=41% Similarity=0.702 Sum_probs=14.5
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+.||++|+|||...
T Consensus 217 ~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIA 233 (512)
T ss_pred cceEEECCCCCcHHHHH
Confidence 35899999999999765
No 272
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=65.86 E-value=5.2 Score=34.13 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=17.2
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++..+..|. -|+.+|++|+|||...
T Consensus 14 ~l~~l~~g~--~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 14 ALRYLKSGY--PVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHhcCC--eEEEEcCCCCCHHHHH
Confidence 333444454 4566899999999865
No 273
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=65.85 E-value=6.2 Score=38.94 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=27.3
Q ss_pred HHHHHh-HHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 34 QVFNDL-GMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 34 ~vy~~~-~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.=|+.. +..+++.+-+|.+-.+++. +||+|||+|-+-
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 344444 4568888889999955554 699999999755
No 274
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=65.74 E-value=4.1 Score=38.00 Aligned_cols=27 Identities=33% Similarity=0.430 Sum_probs=20.3
Q ss_pred HHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 41 MDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 41 ~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
...+..+++|.|..+ ..+||||||.+.
T Consensus 115 ~~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 115 AQVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 356777889988654 559999999653
No 275
>KOG0652|consensus
Probab=65.71 E-value=2.7 Score=35.88 Aligned_cols=14 Identities=50% Similarity=0.937 Sum_probs=12.8
Q ss_pred eEeeccCcCCCcee
Q psy37 54 CVFAYGQTGSGKTF 67 (279)
Q Consensus 54 ~v~~yG~tgSGKT~ 67 (279)
-|+.||+.|+|||.
T Consensus 207 GvLmYGPPGTGKTl 220 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTL 220 (424)
T ss_pred ceEeeCCCCCcHHH
Confidence 58999999999985
No 276
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=65.68 E-value=4.7 Score=38.13 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=19.2
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeE
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
..+..++.|.| +++..+||||||..
T Consensus 150 ~aip~il~g~d--viv~ApTGSGKTla 174 (518)
T PLN00206 150 QAIPAALSGRS--LLVSADTGSGKTAS 174 (518)
T ss_pred HHHHHHhcCCC--EEEEecCCCCccHH
Confidence 34666678876 67778999999964
No 277
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=65.59 E-value=2.6 Score=33.54 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.8
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
++.+|++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999754
No 278
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=65.51 E-value=5.3 Score=36.64 Aligned_cols=18 Identities=50% Similarity=0.717 Sum_probs=15.3
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...++..|++|+|||.|+
T Consensus 223 ~~vi~lvGptGvGKTTta 240 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSI 240 (432)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356778899999999987
No 279
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=65.08 E-value=2.9 Score=39.70 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=31.0
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+.||.+.+.+..-.++.+.+- .+ -..+..|+-+|.+||||++.-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~-----~~-a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQAR-----VV-ARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred CccCceEECCHHHHHHHHHHH-----HH-hCcCCCEEEECCCCccHHHHH
Confidence 567777776665555544443 22 256888999999999999864
No 280
>KOG0739|consensus
Probab=65.06 E-value=2.5 Score=36.83 Aligned_cols=38 Identities=21% Similarity=0.477 Sum_probs=24.5
Q ss_pred HHHHHHHhHHHH-HHHhccccC---eeEeeccCcCCCceeEe
Q psy37 32 QEQVFNDLGMDV-VDAAFEGYN---ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 32 q~~vy~~~~~~l-v~~v~~G~n---~~v~~yG~tgSGKT~Tl 69 (279)
-+.+=+.++.|+ .-+++.|-- ..|+.||+.|+||+|.-
T Consensus 142 KeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLA 183 (439)
T KOG0739|consen 142 KEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLA 183 (439)
T ss_pred HHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHH
Confidence 333444444442 234555554 57999999999999965
No 281
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=65.03 E-value=4.3 Score=37.75 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=17.5
Q ss_pred ccCeeEeeccCcCCCceeEec
Q psy37 50 GYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
|-..-++++|+||||||.++.
T Consensus 42 g~~~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 42 GDFTHVLVIGPTGSGKTTSFV 62 (469)
T ss_pred CcceEEEEEeCCCCCccceee
Confidence 334679999999999999884
No 282
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=65.02 E-value=4.1 Score=35.08 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=15.3
Q ss_pred CeeEeeccCcCCCceeEec
Q psy37 52 NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~ 70 (279)
..+|+..|++|+|||.|+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIA 90 (272)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3566677999999999873
No 283
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=64.95 E-value=4.5 Score=36.25 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=21.6
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.++.+.+|-+..++...+||||||...
T Consensus 5 ~~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 5 TFEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 455667787778888999999999863
No 284
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=64.91 E-value=2 Score=34.44 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.4
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
++..+-||++|+|||..|
T Consensus 19 ~g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467788999999999876
No 285
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=64.84 E-value=4.9 Score=33.69 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=20.4
Q ss_pred HHHHHhcc-cc--CeeEeeccCcCCCcee
Q psy37 42 DVVDAAFE-GY--NACVFAYGQTGSGKTF 67 (279)
Q Consensus 42 ~lv~~v~~-G~--n~~v~~yG~tgSGKT~ 67 (279)
+-+|.++. |+ ...++.+|++|||||.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 55777775 43 5689999999999986
No 286
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=64.77 E-value=6 Score=29.67 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=16.3
Q ss_pred eeEeeccCcCCCceeEecC
Q psy37 53 ACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~G 71 (279)
..|+.+|.-|||||+-.-|
T Consensus 16 ~vi~L~GdLGaGKTtf~r~ 34 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRG 34 (123)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5699999999999987654
No 287
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=64.52 E-value=2 Score=38.82 Aligned_cols=20 Identities=40% Similarity=0.521 Sum_probs=16.6
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
.-.|+..|++|+|||+|+..
T Consensus 206 ~~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34678899999999999854
No 288
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=64.41 E-value=1.9 Score=39.49 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=16.4
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
.+-.++.+|+||||||..|
T Consensus 41 ~~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hhccEEEEcCCCCCHHHHH
Confidence 3567899999999999877
No 289
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=64.41 E-value=3.3 Score=39.31 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=28.5
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
|.|+.+++.+..-+++.+ .+.. +-..+..|+-+|.+||||++.-
T Consensus 216 ~~f~~iiG~S~~m~~~~~-----~i~~-~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQ-----TILL-YARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred cchhheeeCCHHHHHHHH-----HHHH-HhCCCCcEEEECCCCCCHHHHH
Confidence 567776665554444322 2222 3456889999999999998643
No 290
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=64.36 E-value=2.2 Score=37.76 Aligned_cols=44 Identities=57% Similarity=0.958 Sum_probs=39.7
Q ss_pred cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37 102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145 (279)
Q Consensus 102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~ 145 (279)
...+.++|...+.+++..++++|+.+++.+++.++|+++++.|.
T Consensus 52 ~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~ 95 (335)
T PF00225_consen 52 DATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGS 95 (335)
T ss_dssp TSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBS
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCceEEEeecccccccccccccc
Confidence 34588999999999999999999999999999999999999987
No 291
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=64.31 E-value=3.1 Score=36.32 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=13.7
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|+||||||-.-
T Consensus 6 ii~I~GpTasGKS~LA 21 (300)
T PRK14729 6 IVFIFGPTAVGKSNIL 21 (300)
T ss_pred EEEEECCCccCHHHHH
Confidence 6889999999999743
No 292
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=64.31 E-value=4.8 Score=39.86 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=23.6
Q ss_pred CHHHHHHHhHHHHHHHhcccc------CeeEeeccCcCCCceeEe
Q psy37 31 SQEQVFNDLGMDVVDAAFEGY------NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G~------n~~v~~yG~tgSGKT~Tl 69 (279)
.|++.-+.+. ..+....-|. .++++.+|++|+|||++.
T Consensus 458 GQ~~ai~~l~-~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 458 GQDEAIDSLV-SSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELA 501 (731)
T ss_pred CcHHHHHHHH-HHHHHHhcCCCCCCCCceeEEEECCCCccHHHHH
Confidence 3555555554 2333333333 357899999999999764
No 293
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=64.14 E-value=4.9 Score=38.53 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=19.6
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|..+++|.| |++..+||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 4556789988 666889999999763
No 294
>KOG0335|consensus
Probab=63.99 E-value=1.7 Score=40.14 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=18.9
Q ss_pred hccccCeeEeeccCcCCCceeEecCC
Q psy37 47 AFEGYNACVFAYGQTGSGKTFTMMGS 72 (279)
Q Consensus 47 v~~G~n~~v~~yG~tgSGKT~Tl~G~ 72 (279)
+.+|.+. ++++|||||||+...++
T Consensus 108 i~~Grdl--~acAqTGsGKT~aFLiP 131 (482)
T KOG0335|consen 108 ISGGRDL--MACAQTGSGKTAAFLIP 131 (482)
T ss_pred eecCCce--EEEccCCCcchHHHHHH
Confidence 3456654 89999999999988664
No 295
>PRK14531 adenylate kinase; Provisional
Probab=63.78 E-value=3.1 Score=33.30 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=13.1
Q ss_pred eEeeccCcCCCceeE
Q psy37 54 CVFAYGQTGSGKTFT 68 (279)
Q Consensus 54 ~v~~yG~tgSGKT~T 68 (279)
-|+.+|+.|||||..
T Consensus 4 ~i~i~G~pGsGKsT~ 18 (183)
T PRK14531 4 RLLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999876
No 296
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=63.66 E-value=9.4 Score=19.48 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhc
Q psy37 263 IRELHDEITKLKAMLT 278 (279)
Q Consensus 263 ~~~l~~~~~~Lk~~l~ 278 (279)
+.+++.+|..|+.+|+
T Consensus 3 ~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 3 MNRLRNRISDLERQLS 18 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5678889999988875
No 297
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=63.63 E-value=3.3 Score=33.33 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=12.8
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
-+|+-.|++|||||.-+
T Consensus 4 ~~vlL~Gps~SGKTaLf 20 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALF 20 (181)
T ss_dssp -EEEEE-STTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47889999999999654
No 298
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=63.54 E-value=5.5 Score=37.83 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=19.5
Q ss_pred HHhccccCeeEeeccCcCCCceeEe
Q psy37 45 DAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 45 ~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
..+.......|+-||++|+|||+.-
T Consensus 79 ~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 79 AALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred HHHhCCCCceEEEECCCCCCHHHHH
Confidence 3345566778899999999998765
No 299
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=63.35 E-value=4.3 Score=33.63 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=21.9
Q ss_pred HHHHHhcc-cc--CeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFE-GY--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~-G~--n~~v~~yG~tgSGKT~Tl 69 (279)
+-+|.++. |+ ...++.+|++|+|||...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 56777774 54 668899999999998865
No 300
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=63.29 E-value=2.8 Score=38.96 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=15.8
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
-.|+-.|++|||||+.|-
T Consensus 33 Eiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 33 SLLFLCGSSGDGKSEILA 50 (504)
T ss_pred CEEEEECCCCCCHHHHHh
Confidence 467889999999999987
No 301
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=63.19 E-value=9.8 Score=36.48 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=28.3
Q ss_pred cCCCCCCCCCHHHHHHHhHHHHHHHhc--cccCeeEeeccCcCCCce
Q psy37 22 FDPSSPQFASQEQVFNDLGMDVVDAAF--EGYNACVFAYGQTGSGKT 66 (279)
Q Consensus 22 fd~vf~~~~~q~~vy~~~~~~lv~~v~--~G~n~~v~~yG~tgSGKT 66 (279)
|+.+| .++++-+.++..+...+. ......++..|++|+|||
T Consensus 75 F~d~y----Glee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKS 117 (644)
T PRK15455 75 FEEFY----GMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKS 117 (644)
T ss_pred hhccc----CcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCch
Confidence 55566 566666666655544432 455568899999999999
No 302
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=63.18 E-value=6.5 Score=36.06 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=15.4
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...|+.+|++|+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999754
No 303
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=63.11 E-value=2 Score=35.86 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
-|.-.|++|||||.-|
T Consensus 33 ~vaI~GpSGSGKSTLL 48 (226)
T COG1136 33 FVAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999865
No 304
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=63.11 E-value=2.7 Score=38.53 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=16.5
Q ss_pred cCeeEeeccCcCCCceeEecC
Q psy37 51 YNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.+..++-.|++|+||||.-.+
T Consensus 208 ~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHH
Confidence 445577889999999987654
No 305
>CHL00195 ycf46 Ycf46; Provisional
Probab=62.95 E-value=2.3 Score=39.90 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=15.4
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
-.|+.||+.|+|||++.-
T Consensus 260 kGILL~GPpGTGKTllAk 277 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAK 277 (489)
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 469999999999998653
No 306
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=62.85 E-value=2.1 Score=43.34 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=17.9
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
..|+..+.+|+||||||+++
T Consensus 473 ~~n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 473 KKNAHLLILGPTGAGKSATL 492 (893)
T ss_pred CCcccEEEECCCCCCHHHHH
Confidence 34888999999999999988
No 307
>PHA02774 E1; Provisional
Probab=62.75 E-value=4.9 Score=38.32 Aligned_cols=28 Identities=21% Similarity=0.548 Sum_probs=21.4
Q ss_pred HHHHHhccccC--eeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYN--ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n--~~v~~yG~tgSGKT~Tl 69 (279)
..+..+++|.- .|++-||+.|+||||--
T Consensus 422 ~~lk~~l~~~PKknciv~~GPP~TGKS~fa 451 (613)
T PHA02774 422 TALKDFLKGIPKKNCLVIYGPPDTGKSMFC 451 (613)
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 34555666655 59999999999999853
No 308
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=62.66 E-value=6.2 Score=38.71 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 27 PQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 27 ~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.....|+++...+.. ..-.+....++..|+||||||...
T Consensus 261 ~lt~~Q~~ai~~I~~----d~~~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 261 ELTGAQKRVVAEILA----DLASPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred CCCHHHHHHHHHHHH----hhhccCCceEEEECCCCCcHHHHH
Confidence 345556665444432 223444557899999999999754
No 309
>PRK08233 hypothetical protein; Provisional
Probab=62.60 E-value=2.8 Score=33.12 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=12.5
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|..-|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555799999999865
No 310
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=62.57 E-value=3.3 Score=31.50 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=11.8
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|++|||||..+
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999643
No 311
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=62.46 E-value=3 Score=33.20 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=13.7
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|+.|||||...
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999865
No 312
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=62.46 E-value=3 Score=33.43 Aligned_cols=14 Identities=29% Similarity=0.627 Sum_probs=11.9
Q ss_pred EeeccCcCCCceeE
Q psy37 55 VFAYGQTGSGKTFT 68 (279)
Q Consensus 55 v~~yG~tgSGKT~T 68 (279)
|+-.|++|||||.-
T Consensus 3 iiilG~pGaGK~T~ 16 (178)
T COG0563 3 ILILGPPGAGKSTL 16 (178)
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999763
No 313
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=62.38 E-value=4.8 Score=34.19 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=18.7
Q ss_pred HHHhccc---cCeeEeeccCcCCCcee
Q psy37 44 VDAAFEG---YNACVFAYGQTGSGKTF 67 (279)
Q Consensus 44 v~~v~~G---~n~~v~~yG~tgSGKT~ 67 (279)
+|.++.| ....++.+|..|||||-
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~ 38 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTI 38 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHH
Confidence 5666664 45689999999999974
No 314
>KOG2655|consensus
Probab=62.24 E-value=4.2 Score=36.40 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=21.3
Q ss_pred ccccCeeEeeccCcCCCcee---EecCC
Q psy37 48 FEGYNACVFAYGQTGSGKTF---TMMGS 72 (279)
Q Consensus 48 ~~G~n~~v~~yG~tgSGKT~---Tl~G~ 72 (279)
-+|+.-++++.|++|+|||. |||+.
T Consensus 17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~ 44 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKSTFINSLFLT 44 (366)
T ss_pred hcCCceEEEEecCCCccHHHHHHHHHhh
Confidence 58999999999999999976 45554
No 315
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=62.23 E-value=6.3 Score=38.29 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=24.8
Q ss_pred CCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 26 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 26 f~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
|.....|+++...+..+ .-......++..|+||||||...
T Consensus 234 f~lt~~Q~~ai~~I~~~----~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQD----LKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCCHHHHHHHHHHHHH----hccCCCccEEEECCCCCcHHHHH
Confidence 34455566655444432 22333445799999999999864
No 316
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=62.10 E-value=7.9 Score=35.65 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=16.9
Q ss_pred cCeeEeeccCcCCCceeEec
Q psy37 51 YNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl~ 70 (279)
....|+..|.+|+|||.|..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34678999999999999874
No 317
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=62.06 E-value=2.2 Score=42.55 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=16.8
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
-|..++..|.||||||++|
T Consensus 429 ~n~n~~I~G~tGsGKS~~~ 447 (797)
T TIGR02746 429 TNYNIAVVGGSGAGKSFFM 447 (797)
T ss_pred CccceEEEcCCCCCHHHHH
Confidence 3567899999999999998
No 318
>PRK06762 hypothetical protein; Provisional
Probab=62.05 E-value=3.2 Score=32.45 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=12.5
Q ss_pred eEeeccCcCCCceeE
Q psy37 54 CVFAYGQTGSGKTFT 68 (279)
Q Consensus 54 ~v~~yG~tgSGKT~T 68 (279)
.|+..|.+|||||..
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 567789999999873
No 319
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=62.04 E-value=2.1 Score=37.63 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=16.8
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
.-+|+-.|+||||||..|..
T Consensus 143 ~~siii~G~t~sGKTt~lna 162 (312)
T COG0630 143 RKSIIICGGTASGKTTLLNA 162 (312)
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 45678889999999999865
No 320
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=61.92 E-value=3.6 Score=39.02 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=29.0
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
|.||.+++.+..-+++.+ .+.. +-..+..|+-+|.+|+||++.-
T Consensus 209 ~~f~~iiG~S~~m~~~~~-----~i~~-~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRA-----LVRL-YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred cchhheeeCCHHHHHHHH-----HHHH-HhCCCCcEEEECCCCcCHHHHH
Confidence 567777765553333322 2322 3456889999999999998754
No 321
>PRK01172 ski2-like helicase; Provisional
Probab=61.87 E-value=4.9 Score=39.32 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=17.1
Q ss_pred HHHhccccCeeEeeccCcCCCceeE
Q psy37 44 VDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 44 v~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
++.+.+|.| ++..++||||||..
T Consensus 31 i~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 31 IEQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHHhcCCc--EEEECCCCchHHHH
Confidence 344566765 67778999999974
No 322
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=61.83 E-value=7.6 Score=39.17 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=14.8
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
++++.+|++|+|||+..
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57899999999999854
No 323
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=61.48 E-value=3.8 Score=27.05 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=11.7
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|.-.|..|||||...
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999998764
No 324
>PRK10867 signal recognition particle protein; Provisional
Probab=61.46 E-value=8.4 Score=35.56 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=16.0
Q ss_pred CeeEeeccCcCCCceeEec
Q psy37 52 NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~ 70 (279)
...|+..|.+|||||.|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 4678889999999999763
No 325
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=61.43 E-value=7.9 Score=33.07 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=22.6
Q ss_pred HHHHHHhcc--ccCeeEeeccCcCCCceeEe
Q psy37 41 MDVVDAAFE--GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 41 ~~lv~~v~~--G~n~~v~~yG~tgSGKT~Tl 69 (279)
..+.+.+.+ .-...|.-+|..|.|||...
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 445566665 67778999999999999865
No 326
>PRK14532 adenylate kinase; Provisional
Probab=60.87 E-value=4.1 Score=32.58 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=13.0
Q ss_pred eEeeccCcCCCceeE
Q psy37 54 CVFAYGQTGSGKTFT 68 (279)
Q Consensus 54 ~v~~yG~tgSGKT~T 68 (279)
.|+..|+.|||||..
T Consensus 2 ~i~~~G~pGsGKsT~ 16 (188)
T PRK14532 2 NLILFGPPAAGKGTQ 16 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999875
No 327
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=60.85 E-value=4.1 Score=32.25 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=13.7
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999854
No 328
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=60.61 E-value=6.6 Score=34.53 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=22.3
Q ss_pred HHHHHHhcccc---CeeEeeccCcCCCceeEe
Q psy37 41 MDVVDAAFEGY---NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 41 ~~lv~~v~~G~---n~~v~~yG~tgSGKT~Tl 69 (279)
.+-++.++.|- ...+..+|++|||||...
T Consensus 88 ~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~ 119 (317)
T PRK04301 88 SKELDELLGGGIETQSITEFYGEFGSGKTQIC 119 (317)
T ss_pred CHHHHHHhcCCccCCcEEEEECCCCCCHhHHH
Confidence 36677788753 567889999999999754
No 329
>KOG0742|consensus
Probab=60.49 E-value=4 Score=37.14 Aligned_cols=15 Identities=40% Similarity=0.815 Sum_probs=12.9
Q ss_pred eeEeeccCcCCCcee
Q psy37 53 ACVFAYGQTGSGKTF 67 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~ 67 (279)
-.|+.||+.|+|||-
T Consensus 385 RNilfyGPPGTGKTm 399 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTM 399 (630)
T ss_pred hheeeeCCCCCCchH
Confidence 368999999999973
No 330
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=60.30 E-value=5.6 Score=37.28 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=21.6
Q ss_pred HHHHHhccc---cCeeEeeccCcCCCcee
Q psy37 42 DVVDAAFEG---YNACVFAYGQTGSGKTF 67 (279)
Q Consensus 42 ~lv~~v~~G---~n~~v~~yG~tgSGKT~ 67 (279)
|=+|.++.| ...+++..|++|||||.
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~ 36 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTL 36 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHH
Confidence 557888875 47899999999999985
No 331
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=60.26 E-value=4.4 Score=39.74 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=28.4
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+.|+.+++.+..-..+.+.+- . +-..+..|+-.|.+|||||+.-
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~-----~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVE-----M-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccceeecCHHHHHHHHHHH-----H-HhCCCCCEEEECCCCcCHHHHH
Confidence 345666655554444433332 2 3356789999999999999854
No 332
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=60.23 E-value=12 Score=33.15 Aligned_cols=44 Identities=59% Similarity=1.019 Sum_probs=38.5
Q ss_pred cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
.....++|+.. .+++.+++++++.+++.+++.++|+++++.|..
T Consensus 56 ~~~q~~v~~~v-~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~ 99 (329)
T cd01366 56 DASQEDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPP 99 (329)
T ss_pred CCCHHHHHHHH-HHHHHHHhCCCceEEEEeCCCCCCCcEEecCCC
Confidence 35677888874 788899999999999999999999999999864
No 333
>KOG3859|consensus
Probab=60.16 E-value=3.6 Score=35.43 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=22.1
Q ss_pred HHHH-hccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDA-AFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~-v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+|.. +-+|+.-.|++.|.||.|||..|
T Consensus 32 LV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 32 LVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 4443 45899999999999999999755
No 334
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=60.11 E-value=4.3 Score=38.46 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=29.0
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+.||.+.+.+..-.++.+.+- .+ -..+.-|+-+|.+||||++..
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~-----~~-A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQAR-----KL-AMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccceeECCHHHHHHHHHHH-----HH-hCCCCCEEEECCCCccHHHHH
Confidence 567777766554444433332 22 235778999999999999865
No 335
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=60.10 E-value=5 Score=33.66 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=14.5
Q ss_pred eEeeccCcCCCceeEecC
Q psy37 54 CVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~G 71 (279)
+-..+|++|+|||.|+-.
T Consensus 34 ~~~~~GpagtGKtetik~ 51 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKD 51 (231)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred CCCCcCCCCCCchhHHHH
Confidence 334699999999999844
No 336
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=60.02 E-value=7.7 Score=34.14 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=22.8
Q ss_pred HHHHHHHhccc-c--CeeEeeccCcCCCceeEe
Q psy37 40 GMDVVDAAFEG-Y--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 40 ~~~lv~~v~~G-~--n~~v~~yG~tgSGKT~Tl 69 (279)
+-+-+|.++.| + ...+..||++|||||.-.
T Consensus 81 G~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~ 113 (313)
T TIGR02238 81 GSQALDGILGGGIESMSITEVFGEFRCGKTQLS 113 (313)
T ss_pred CCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHH
Confidence 34678888876 3 346779999999999744
No 337
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=59.95 E-value=2.5 Score=38.72 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=16.5
Q ss_pred CeeEeeccCcCCCceeEec
Q psy37 52 NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~ 70 (279)
...|...|++|+|||.|+.
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578899999999999983
No 338
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=59.93 E-value=6 Score=34.61 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=18.2
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
.-+.+|.-+|+=|||||+-|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56789999999999999987
No 339
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=59.81 E-value=7 Score=34.59 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=24.1
Q ss_pred HhHHHHHHHhcc--cc--CeeEeeccCcCCCceeEe
Q psy37 38 DLGMDVVDAAFE--GY--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 38 ~~~~~lv~~v~~--G~--n~~v~~yG~tgSGKT~Tl 69 (279)
.++-+-+|.++. |+ ...+..||++|||||...
T Consensus 37 sTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLa 72 (325)
T cd00983 37 PTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLA 72 (325)
T ss_pred cCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 344478999987 44 446889999999999644
No 340
>KOG0727|consensus
Probab=59.58 E-value=4 Score=34.70 Aligned_cols=64 Identities=22% Similarity=0.388 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHhHHHHHHHhc---cccCe--eEeeccCcCCCceeEec--------------CC---CCCCCCCCCccc
Q psy37 27 PQFASQEQVFNDLGMDVVDAAF---EGYNA--CVFAYGQTGSGKTFTMM--------------GS---KATTDNSPDAHK 84 (279)
Q Consensus 27 ~~~~~q~~vy~~~~~~lv~~v~---~G~n~--~v~~yG~tgSGKT~Tl~--------------G~---~~~~G~~~~~~~ 84 (279)
+-+-.-++|-+.+-.|+...=+ =|.+- .|+.||+.|+|||-... |+ ...-|--||.++
T Consensus 159 gld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvr 238 (408)
T KOG0727|consen 159 GLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVR 238 (408)
T ss_pred cchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHH
Confidence 4445566776666666665544 25543 58999999999975332 11 112356677777
Q ss_pred cceeccc
Q psy37 85 DFTFDHS 91 (279)
Q Consensus 85 ~l~f~~~ 91 (279)
++ |...
T Consensus 239 dv-frla 244 (408)
T KOG0727|consen 239 DV-FRLA 244 (408)
T ss_pred HH-HHHH
Confidence 77 7654
No 341
>PRK14527 adenylate kinase; Provisional
Probab=59.53 E-value=4.5 Score=32.60 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.3
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+.+|++|||||...
T Consensus 7 ~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQA 23 (191)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999998754
No 342
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.52 E-value=6.1 Score=35.44 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=18.9
Q ss_pred HHHhcccc-CeeEeeccCcCCCceeEe
Q psy37 44 VDAAFEGY-NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 44 v~~v~~G~-n~~v~~yG~tgSGKT~Tl 69 (279)
...+-+|. ...++-||+.|+|||++.
T Consensus 30 ~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 30 LNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 33333554 458999999999999765
No 343
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=59.47 E-value=3.7 Score=37.60 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=15.7
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
.+.|+.+|+||+|||...
T Consensus 116 ~~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLA 133 (413)
T ss_pred CceEEEECCCCcCHHHHH
Confidence 368999999999999865
No 344
>PRK03839 putative kinase; Provisional
Probab=59.29 E-value=3.5 Score=32.78 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=12.2
Q ss_pred EeeccCcCCCceeE
Q psy37 55 VFAYGQTGSGKTFT 68 (279)
Q Consensus 55 v~~yG~tgSGKT~T 68 (279)
|+..|..|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 77889999999874
No 345
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=59.19 E-value=5.7 Score=38.74 Aligned_cols=44 Identities=30% Similarity=0.344 Sum_probs=29.9
Q ss_pred CCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 23 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 23 d~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
..-|.|.-.|..-++.++ +.+-+|...- +.+|.||||||+||..
T Consensus 5 ~~~~~~~~~Q~~ai~~l~----~~~~~~~~~~-~l~Gvtgs~kt~~~a~ 48 (655)
T TIGR00631 5 HSPFQPAGDQPKAIAKLV----EGLTDGEKHQ-TLLGVTGSGKTFTMAN 48 (655)
T ss_pred ccCCCCChHHHHHHHHHH----HhhhcCCCcE-EEECCCCcHHHHHHHH
Confidence 334578888888766543 4444553222 3789999999999865
No 346
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=59.07 E-value=4.2 Score=40.21 Aligned_cols=29 Identities=21% Similarity=0.270 Sum_probs=21.8
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
+++-+..+....++.||++|+|||....|
T Consensus 194 ~~~~L~~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 194 TIQVLCRRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred HHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 44334455566788999999999998765
No 347
>PRK00300 gmk guanylate kinase; Provisional
Probab=59.03 E-value=4.6 Score=32.78 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=14.0
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|++|||||..+
T Consensus 6 ~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46788999999999654
No 348
>KOG0738|consensus
Probab=58.98 E-value=6.4 Score=35.61 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=21.5
Q ss_pred HhHHH-HHHHhccccCe---eEeeccCcCCCcee
Q psy37 38 DLGMD-VVDAAFEGYNA---CVFAYGQTGSGKTF 67 (279)
Q Consensus 38 ~~~~~-lv~~v~~G~n~---~v~~yG~tgSGKT~ 67 (279)
.++.| ..-.++.|.-. .|+.+|+.|+|||-
T Consensus 227 AVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 227 AVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred HHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 34445 33456677765 69999999999975
No 349
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=58.85 E-value=6.7 Score=30.91 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=20.6
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
+-+...+.| -+++..|++|.|||..+.
T Consensus 27 ~~l~~~l~~--k~~vl~G~SGvGKSSLiN 53 (161)
T PF03193_consen 27 EELKELLKG--KTSVLLGQSGVGKSSLIN 53 (161)
T ss_dssp HHHHHHHTT--SEEEEECSTTSSHHHHHH
T ss_pred HHHHHHhcC--CEEEEECCCCCCHHHHHH
Confidence 445566667 677888999999998764
No 350
>KOG0735|consensus
Probab=58.79 E-value=5.2 Score=38.98 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=17.3
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
--..+-|+.||+.|+||||..
T Consensus 698 lr~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 698 LRLRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred cccccceEEECCCCCcHHHHH
Confidence 345667999999999999954
No 351
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=58.72 E-value=2.3 Score=38.57 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=14.4
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
+..++..|.+|||||.+|..
T Consensus 15 ~~~~li~G~~GsGKT~~i~~ 34 (386)
T PF10412_consen 15 NRHILIIGATGSGKTQAIRH 34 (386)
T ss_dssp GG-EEEEE-TTSSHHHHHHH
T ss_pred hCcEEEECCCCCCHHHHHHH
Confidence 34578999999999987644
No 352
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=58.59 E-value=3.7 Score=32.07 Aligned_cols=16 Identities=38% Similarity=0.455 Sum_probs=13.4
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|...|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998764
No 353
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=58.47 E-value=4.4 Score=30.62 Aligned_cols=15 Identities=33% Similarity=0.476 Sum_probs=12.5
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 577899999999754
No 354
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=58.46 E-value=6.5 Score=35.09 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=23.0
Q ss_pred hHHHHHHHhccc---cCeeEeeccCcCCCceeE
Q psy37 39 LGMDVVDAAFEG---YNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 39 ~~~~lv~~v~~G---~n~~v~~yG~tgSGKT~T 68 (279)
++-+-+|.++.| .......||+.|||||.-
T Consensus 110 TG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql 142 (344)
T PLN03187 110 TGSQALDELLGGGIETRCITEAFGEFRSGKTQL 142 (344)
T ss_pred CCcHhHHhhcCCCCCCCeEEEEecCCCCChhHH
Confidence 344778999975 344677999999999973
No 355
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=58.42 E-value=5.1 Score=35.78 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=23.2
Q ss_pred HHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 36 FNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 36 y~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
|...+.+.++......+- ++..|.||||||.+|.-
T Consensus 126 wr~~~~~~~~~~~~~~~~-ivl~G~TGsGKT~iL~~ 160 (345)
T PRK11784 126 YRRFVIDTLEEAPAQFPL-VVLGGNTGSGKTELLQA 160 (345)
T ss_pred HHHhhHHHHhhhcccCce-EecCCCCcccHHHHHHH
Confidence 444444555554444443 56788999999998865
No 356
>KOG0328|consensus
Probab=58.32 E-value=10 Score=32.82 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=20.8
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
..|..++.|.| |+|-.|+|+|||-|.
T Consensus 56 rAi~~IlkGrd--ViaQaqSGTGKTa~~ 81 (400)
T KOG0328|consen 56 RAIPQILKGRD--VIAQAQSGTGKTATF 81 (400)
T ss_pred hhhhhhhcccc--eEEEecCCCCceEEE
Confidence 35666788988 567889999999886
No 357
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=58.12 E-value=3.1 Score=40.65 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=16.9
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
.+.++..|..|||||.||..
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 45678899999999999965
No 358
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.12 E-value=5.1 Score=38.82 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.9
Q ss_pred eEeeccCcCCCceeEec
Q psy37 54 CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~ 70 (279)
.++.+|++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48889999999999874
No 359
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=58.09 E-value=3.6 Score=31.79 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=12.3
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|.+|||||...
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998743
No 360
>PRK04040 adenylate kinase; Provisional
Probab=58.08 E-value=3.7 Score=33.19 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=14.0
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999876
No 361
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=58.08 E-value=7 Score=32.28 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=20.6
Q ss_pred HHHHHhcc-cc--CeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFE-GY--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~-G~--n~~v~~yG~tgSGKT~Tl 69 (279)
+-+|.++. |+ ...++-+|.+|+|||.-.
T Consensus 3 ~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~ 33 (224)
T TIGR03880 3 PGLDEMLGGGFPEGHVIVVIGEYGTGKTTFS 33 (224)
T ss_pred hhhHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 34677775 43 567888999999998743
No 362
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=58.03 E-value=4.4 Score=33.54 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=20.1
Q ss_pred HHHHHhccc---cCeeEeeccCcCCCceeE
Q psy37 42 DVVDAAFEG---YNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 42 ~lv~~v~~G---~n~~v~~yG~tgSGKT~T 68 (279)
|-+|.++.| .++.++..|++|||||.-
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 345667743 356899999999999754
No 363
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=58.01 E-value=4.9 Score=33.09 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=14.0
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999764
No 364
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=57.99 E-value=4.4 Score=33.59 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=12.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.++-+|+||+|||..-
T Consensus 3 v~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEEE-STTSSHHHHH
T ss_pred EEEEECCCCCChhHHH
Confidence 3567899999999864
No 365
>KOG0390|consensus
Probab=57.90 E-value=5.6 Score=39.19 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=32.4
Q ss_pred CHHHHHHHhHHHHHHHhcc-ccCeeEeeccCcCCCceeEec
Q psy37 31 SQEQVFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~-G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
=|.+-|+-..+.+.-.+.. |.++||+|-.+ |+|||+-+.
T Consensus 242 HQ~EG~~FL~knl~g~~~~~~~~GCImAd~~-GlGKTlq~I 281 (776)
T KOG0390|consen 242 HQREGFEFLYKNLAGLIRPKNSGGCIMADEP-GLGKTLQCI 281 (776)
T ss_pred hHHHHHHHHHhhhhcccccCCCCceEeeCCC-CcchHHHHH
Confidence 3888888888777766664 99999999987 999999774
No 366
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=57.71 E-value=7.4 Score=30.83 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=22.9
Q ss_pred HHHHHhcc-ccCeeEeeccCcCCCceeEec
Q psy37 42 DVVDAAFE-GYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 42 ~lv~~v~~-G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.++..+.. .....|+..|..|||||..+.
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll~ 32 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLLN 32 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHHH
Confidence 35666664 777889999999999997663
No 367
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=57.70 E-value=4.9 Score=35.17 Aligned_cols=16 Identities=38% Similarity=0.382 Sum_probs=13.9
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+-+|+|+||||..-
T Consensus 5 ~i~I~GPTAsGKT~la 20 (308)
T COG0324 5 LIVIAGPTASGKTALA 20 (308)
T ss_pred EEEEECCCCcCHHHHH
Confidence 5788999999999865
No 368
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=57.65 E-value=4.6 Score=33.09 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=18.5
Q ss_pred EeeccCcCCCceeEecCCCCCCCCCCCccccc
Q psy37 55 VFAYGQTGSGKTFTMMGSKATTDNSPDAHKDF 86 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l 86 (279)
|+.+|+.|||||..--=-....|+......++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdl 33 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDL 33 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHH
Confidence 67899999999764211112234444444444
No 369
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=57.37 E-value=2.9 Score=33.87 Aligned_cols=15 Identities=40% Similarity=0.450 Sum_probs=12.4
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|..-|++|||||.++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999976
No 370
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=57.36 E-value=2.3 Score=35.31 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=11.2
Q ss_pred eccCcCCCceeEe
Q psy37 57 AYGQTGSGKTFTM 69 (279)
Q Consensus 57 ~yG~tgSGKT~Tl 69 (279)
--|++|||||.++
T Consensus 4 I~G~sGSGKTTla 16 (220)
T cd02025 4 IAGSVAVGKSTTA 16 (220)
T ss_pred eeCCCCCCHHHHH
Confidence 3499999999987
No 371
>PRK09354 recA recombinase A; Provisional
Probab=57.32 E-value=6.7 Score=35.06 Aligned_cols=31 Identities=35% Similarity=0.411 Sum_probs=24.0
Q ss_pred hHHHHHHHhcc-c-c--CeeEeeccCcCCCceeEe
Q psy37 39 LGMDVVDAAFE-G-Y--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 39 ~~~~lv~~v~~-G-~--n~~v~~yG~tgSGKT~Tl 69 (279)
++.+-+|.++. | + ...+..||++|||||...
T Consensus 43 TGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLa 77 (349)
T PRK09354 43 TGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLA 77 (349)
T ss_pred CCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHH
Confidence 34478999987 4 3 457889999999999754
No 372
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=57.32 E-value=8.6 Score=38.55 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=19.1
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++++.+-++. .|+..|+||||||..+
T Consensus 12 ~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 12 ELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 4555554443 4788999999999876
No 373
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=57.26 E-value=6 Score=37.10 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=31.0
Q ss_pred eeccceeecCCCCCCCCCHHHHHHHhHHHHHHHh-----ccccCeeEeeccCcCCCceeEe
Q psy37 14 TFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAA-----FEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 14 ~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v-----~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|......++.+-+-+.-.+.+-+.+..|+...= -......|+-||+.|+|||+.-
T Consensus 233 ~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 233 LFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred ccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHH
Confidence 3333334445554433444444444443433221 1245557999999999999864
No 374
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=57.25 E-value=4.5 Score=35.61 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=33.0
Q ss_pred cCCCCCCCCCHHHHHHHhHHHHHHHhc-cccCeeEeeccCcCCCceeEe
Q psy37 22 FDPSSPQFASQEQVFNDLGMDVVDAAF-EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 22 fd~vf~~~~~q~~vy~~~~~~lv~~v~-~G~n~~v~~yG~tgSGKT~Tl 69 (279)
|-+|=+++.++.+-=.+.++.+|+.++ .|+ .+|.||.+|.|||+.+
T Consensus 60 f~~v~a~~~~~~eWdrs~~P~lId~~fr~g~--~~~~~gdsg~GKttll 106 (402)
T COG3598 60 FIQVQAEAMRLSEWDRSNSPQLIDEFFRKGY--VSILYGDSGVGKTTLL 106 (402)
T ss_pred eeEehhhhcChhhcCcccChhhhhHHhhcCe--eEEEecCCcccHhHHH
Confidence 335656666666655666767888877 454 4678999999999865
No 375
>PRK10689 transcription-repair coupling factor; Provisional
Probab=57.23 E-value=8.6 Score=40.06 Aligned_cols=39 Identities=23% Similarity=0.190 Sum_probs=25.1
Q ss_pred CCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeE
Q psy37 26 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 26 f~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
|.+...|.+.+..+..++ -.+..--++.+|+||||||-+
T Consensus 599 ~~~T~~Q~~aI~~il~d~----~~~~~~d~Ll~a~TGsGKT~v 637 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDM----CQPLAMDRLVCGDVGFGKTEV 637 (1147)
T ss_pred CCCCHHHHHHHHHHHHHh----hcCCCCCEEEEcCCCcCHHHH
Confidence 346666777655554332 233334589999999999964
No 376
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=57.21 E-value=3.7 Score=33.19 Aligned_cols=15 Identities=40% Similarity=0.439 Sum_probs=12.2
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|.-.|++|||||+.-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999864
No 377
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=57.09 E-value=6.8 Score=34.76 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=22.7
Q ss_pred CHHHHHHHhHHHHHHHhcccc-CeeEeeccCcCCCceeEe
Q psy37 31 SQEQVFNDLGMDVVDAAFEGY-NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G~-n~~v~~yG~tgSGKT~Tl 69 (279)
.|+++.+... ..+-+|. ..+++.||+.|+|||.+.
T Consensus 18 g~~~~~~~l~----~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 18 GQEHIVQTLK----NAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CcHHHHHHHH----HHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 4555544333 2333454 457899999999999765
No 378
>PLN02796 D-glycerate 3-kinase
Probab=57.05 E-value=2.3 Score=37.85 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=12.3
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|-.-|++|||||..+
T Consensus 103 IGI~G~sGSGKSTLa 117 (347)
T PLN02796 103 IGISAPQGCGKTTLV 117 (347)
T ss_pred EEEECCCCCcHHHHH
Confidence 556699999999874
No 379
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=56.92 E-value=4.8 Score=41.08 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=21.9
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
..|..++.+.+.+ +..|..|+||||+|-
T Consensus 353 ~Av~~il~s~~v~-vv~G~AGTGKTT~l~ 380 (988)
T PRK13889 353 DALAHVTDGRDLG-VVVGYAGTGKSAMLG 380 (988)
T ss_pred HHHHHHhcCCCeE-EEEeCCCCCHHHHHH
Confidence 4677778777654 588999999999874
No 380
>PTZ00301 uridine kinase; Provisional
Probab=56.79 E-value=3.3 Score=34.19 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=11.6
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|---|++|||||+.-
T Consensus 6 IgIaG~SgSGKTTla 20 (210)
T PTZ00301 6 IGISGASGSGKSSLS 20 (210)
T ss_pred EEEECCCcCCHHHHH
Confidence 445689999999853
No 381
>PRK14530 adenylate kinase; Provisional
Probab=56.78 E-value=4.7 Score=33.16 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=13.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|++|||||...
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999998753
No 382
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=56.71 E-value=4.2 Score=30.85 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=16.3
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
..+.-|+-+|..||||++..
T Consensus 19 ~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHH
T ss_pred CCCCcEEEEcCCCCCHHHHH
Confidence 66778899999999999864
No 383
>PRK06851 hypothetical protein; Provisional
Probab=56.53 E-value=4.6 Score=36.36 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=24.2
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.+.+.++.|.+-.++.-|.+|+|||.+|-
T Consensus 20 s~~~~~~~~~~~~~il~G~pGtGKStl~~ 48 (367)
T PRK06851 20 SLYDSIIDGANRIFILKGGPGTGKSTLMK 48 (367)
T ss_pred hhhhhhccccceEEEEECCCCCCHHHHHH
Confidence 35556678888899999999999999884
No 384
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=56.46 E-value=5.3 Score=32.04 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.7
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677999999999865
No 385
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=56.22 E-value=4.7 Score=29.31 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.9
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|.+|+|||.-+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999865
No 386
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=56.20 E-value=4.9 Score=39.85 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=21.4
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
..|..++.+ +..++..|..|+|||++|-+
T Consensus 359 ~Av~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 359 EAVRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 355556655 34667889999999998855
No 387
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=55.93 E-value=8.6 Score=35.72 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=19.0
Q ss_pred HHHHhccccC-eeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYN-ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n-~~v~~yG~tgSGKT~Tl 69 (279)
+...+-.|.- .+++.||+.|+|||.+.
T Consensus 29 L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 29 LKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred HHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 3333445554 56888999999999765
No 388
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=55.75 E-value=7.5 Score=36.69 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=23.1
Q ss_pred CHHHHHHHhHHHHHHHhcccc-CeeEeeccCcCCCceeEe
Q psy37 31 SQEQVFNDLGMDVVDAAFEGY-NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G~-n~~v~~yG~tgSGKT~Tl 69 (279)
.|+.+.+.. ...+..|. ...++.+|+.|+|||.+.
T Consensus 25 Gq~~vv~~L----~~ai~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 25 GQEVLVKVL----SYTILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred CcHHHHHHH----HHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 555554422 22234454 358999999999999865
No 389
>PTZ00035 Rad51 protein; Provisional
Probab=55.74 E-value=8.2 Score=34.35 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=24.6
Q ss_pred hHHHHHHHhcccc---CeeEeeccCcCCCceeEe
Q psy37 39 LGMDVVDAAFEGY---NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 39 ~~~~lv~~v~~G~---n~~v~~yG~tgSGKT~Tl 69 (279)
++-+-+|.++.|- ...+..+|++|||||..+
T Consensus 102 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~ 135 (337)
T PTZ00035 102 TGSTQLDKLLGGGIETGSITELFGEFRTGKTQLC 135 (337)
T ss_pred CCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHH
Confidence 4457889999753 567889999999999755
No 390
>PRK00279 adk adenylate kinase; Reviewed
Probab=55.66 E-value=5.2 Score=32.90 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=18.8
Q ss_pred EeeccCcCCCceeEecCCCCCCCCCCCccccc
Q psy37 55 VFAYGQTGSGKTFTMMGSKATTDNSPDAHKDF 86 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l 86 (279)
|+.+|+.|||||..--=-....|.......++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl 34 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHISTGDM 34 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEECCcc
Confidence 78899999999964211112234444444444
No 391
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=55.53 E-value=5.6 Score=31.52 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.8
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|++|||||...
T Consensus 4 ~i~l~G~~gsGKst~a 19 (175)
T cd00227 4 IIILNGGSSAGKSSIA 19 (175)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999998754
No 392
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=55.52 E-value=6.3 Score=34.22 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=23.9
Q ss_pred CCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 29 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 29 ~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
-..|.++-+.+. +.+-+|. .++.=.+||+|||.+++-
T Consensus 10 r~~Q~~~m~~v~----~~~~~~~--~~~~eapTGtGKTl~~L~ 46 (289)
T smart00488 10 YPIQYEFMEELK----RVLDRGK--IGILESPTGTGKTLSLLC 46 (289)
T ss_pred CHHHHHHHHHHH----HHHHcCC--cEEEECCCCcchhHHHHH
Confidence 345666544443 3344564 467777999999988754
No 393
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=55.52 E-value=6.3 Score=34.22 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=23.9
Q ss_pred CCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 29 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 29 ~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
-..|.++-+.+. +.+-+|. .++.=.+||+|||.+++-
T Consensus 10 r~~Q~~~m~~v~----~~~~~~~--~~~~eapTGtGKTl~~L~ 46 (289)
T smart00489 10 YPIQYEFMEELK----RVLDRGK--IGILESPTGTGKTLSLLC 46 (289)
T ss_pred CHHHHHHHHHHH----HHHHcCC--cEEEECCCCcchhHHHHH
Confidence 345666544443 3344564 467777999999988754
No 394
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=55.49 E-value=4.5 Score=37.32 Aligned_cols=15 Identities=47% Similarity=0.727 Sum_probs=12.7
Q ss_pred eeccCcCCCceeEec
Q psy37 56 FAYGQTGSGKTFTMM 70 (279)
Q Consensus 56 ~~yG~tgSGKT~Tl~ 70 (279)
+--|+||+|||-||.
T Consensus 23 LIaGATGTGKTvTLq 37 (502)
T PF05872_consen 23 LIAGATGTGKTVTLQ 37 (502)
T ss_pred eeeccCCCCceehHH
Confidence 345999999999994
No 395
>KOG0925|consensus
Probab=55.17 E-value=6.2 Score=36.69 Aligned_cols=20 Identities=40% Similarity=0.498 Sum_probs=18.3
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
+.|.+|+..|.||||||.-+
T Consensus 60 ~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 60 LNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred hcCceEEEEecCCCCccccC
Confidence 67999999999999999866
No 396
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=55.11 E-value=5.3 Score=35.08 Aligned_cols=16 Identities=38% Similarity=0.436 Sum_probs=13.6
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|+||||||..-
T Consensus 6 ~i~i~GptgsGKt~la 21 (307)
T PRK00091 6 VIVIVGPTASGKTALA 21 (307)
T ss_pred EEEEECCCCcCHHHHH
Confidence 5888999999999743
No 397
>KOG2035|consensus
Probab=55.07 E-value=13 Score=32.29 Aligned_cols=35 Identities=17% Similarity=0.428 Sum_probs=23.1
Q ss_pred HHHHhHHHHHHHhcc-ccCeeEeeccCcCCCceeEe
Q psy37 35 VFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 35 vy~~~~~~lv~~v~~-G~n~~v~~yG~tgSGKT~Tl 69 (279)
+|.+-..+.+..+.. |----++.||++|+||-..+
T Consensus 16 ~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTri 51 (351)
T KOG2035|consen 16 IYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRI 51 (351)
T ss_pred ccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhH
Confidence 344444455555554 44467999999999997654
No 398
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=54.91 E-value=7 Score=39.01 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=14.1
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.++.||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6888999999999855
No 399
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=54.71 E-value=8.2 Score=35.35 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=27.4
Q ss_pred HHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 34 QVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 34 ~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
..-+.+. .-++.+-+|....-|..|.=||||||.+
T Consensus 32 ~e~~~l~-~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 32 REIEALD-RDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHH-HHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 3333343 3467788999999999999999999987
No 400
>KOG0741|consensus
Probab=54.65 E-value=6 Score=37.24 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=23.4
Q ss_pred CCCHHHHHHHhHH-----H-HHHHhccccCe--eEeeccCcCCCcee
Q psy37 29 FASQEQVFNDLGM-----D-VVDAAFEGYNA--CVFAYGQTGSGKTF 67 (279)
Q Consensus 29 ~~~q~~vy~~~~~-----~-lv~~v~~G~n~--~v~~yG~tgSGKT~ 67 (279)
+..=.+||+.... | +|+++ |+.- -|+.||+.|+|||.
T Consensus 227 d~EFs~IFRRAFAsRvFpp~vie~l--Gi~HVKGiLLyGPPGTGKTL 271 (744)
T KOG0741|consen 227 DKEFSDIFRRAFASRVFPPEVIEQL--GIKHVKGILLYGPPGTGKTL 271 (744)
T ss_pred hHHHHHHHHHHHHhhcCCHHHHHHc--CccceeeEEEECCCCCChhH
Confidence 3444566665432 2 44444 4443 48999999999986
No 401
>PRK10865 protein disaggregation chaperone; Provisional
Probab=54.58 E-value=4.9 Score=40.54 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=23.4
Q ss_pred HHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 40 GMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 40 ~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
+..+|+-+....-..++-+|++|+|||+...|
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHH
Confidence 34455444455566788899999999999876
No 402
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=54.54 E-value=3.7 Score=40.84 Aligned_cols=18 Identities=39% Similarity=0.589 Sum_probs=16.8
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
|...+..|+||||||+++
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 788999999999999987
No 403
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=54.50 E-value=5.8 Score=31.44 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=16.4
Q ss_pred cccCeeEeeccCcCCCceeE
Q psy37 49 EGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~T 68 (279)
-..+..|+-+|.+|+||+..
T Consensus 19 a~~~~pVlI~GE~GtGK~~l 38 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELL 38 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHH
T ss_pred hCCCCCEEEEcCCCCcHHHH
Confidence 36779999999999999865
No 404
>KOG2228|consensus
Probab=54.47 E-value=19 Score=32.14 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 27 PQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 27 ~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
+-...|.++++-+ =..++.|-.-+|+-.|+.|||||+-+-
T Consensus 28 g~~~~~~~l~~~l----kqt~~~gEsnsviiigprgsgkT~li~ 67 (408)
T KOG2228|consen 28 GVQDEQKHLSELL----KQTILHGESNSVIIIGPRGSGKTILID 67 (408)
T ss_pred ehHHHHHHHHHHH----HHHHHhcCCCceEEEccCCCCceEeeH
Confidence 3344555554322 223568999999999999999999873
No 405
>PRK14528 adenylate kinase; Provisional
Probab=54.42 E-value=4.9 Score=32.34 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.4
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|++|||||...
T Consensus 3 ~i~i~G~pGsGKtt~a 18 (186)
T PRK14528 3 NIIFMGPPGAGKGTQA 18 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998764
No 406
>PTZ00110 helicase; Provisional
Probab=54.23 E-value=8.8 Score=36.59 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=18.5
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+..+++|.|. ++..+||||||.+.
T Consensus 160 aip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 160 GWPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHHhcCCCE--EEEeCCCChHHHHH
Confidence 34556788865 45679999999763
No 407
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=54.22 E-value=3.7 Score=35.86 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=24.9
Q ss_pred HHHHhHhhcCC-CceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccC
Q psy37 205 LTWLLKDSLGG-NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNE 256 (279)
Q Consensus 205 LT~lL~~~l~g-~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~ 256 (279)
|-+.|+..... +.-++++.+ +.+| ++++|+++-.+.+..+...
T Consensus 176 lr~wLr~~~~~~~~ttvfVTH------D~ee---a~~ladrvvvl~~G~Ieqv 219 (345)
T COG1118 176 LRRWLRKLHDRLGVTTVFVTH------DQEE---ALELADRVVVLNQGRIEQV 219 (345)
T ss_pred HHHHHHHHHHhhCceEEEEeC------CHHH---HHhhcceEEEecCCeeeee
Confidence 34455555555 344444433 3334 4788888877777765543
No 408
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=54.21 E-value=9.8 Score=36.91 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=22.8
Q ss_pred CHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 31 SQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|.++++.+...+ -+ ...+++-.+||+|||+..
T Consensus 1 ~Q~~~~~~i~~al----~~--~~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 1 EQALFYLNCLTSL----RQ--KRIGMLEASTGVGKTLAM 33 (636)
T ss_pred CHHHHHHHHHHHH----hc--CCeEEEEcCCCCcHHHHH
Confidence 3777876665333 22 356888899999999643
No 409
>KOG1534|consensus
Probab=54.15 E-value=7 Score=32.36 Aligned_cols=43 Identities=16% Similarity=0.010 Sum_probs=23.7
Q ss_pred chhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHH
Q psy37 202 DSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANR 244 (279)
Q Consensus 202 ~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~ 244 (279)
-.+||+-+...++..+-+-++--=+..++.....|+.+..|-.
T Consensus 209 f~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 209 FKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred HHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 4678887777777666555553323333334444555554443
No 410
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=54.09 E-value=3.9 Score=38.66 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=14.7
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
..|...|++|+|||+|+.
T Consensus 351 ~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIA 368 (559)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 466666999999999973
No 411
>PRK02496 adk adenylate kinase; Provisional
Probab=53.70 E-value=5.9 Score=31.59 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=12.6
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|+.|||||...
T Consensus 4 i~i~G~pGsGKst~a 18 (184)
T PRK02496 4 LIFLGPPGAGKGTQA 18 (184)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999998754
No 412
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=53.50 E-value=5.4 Score=38.35 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=17.8
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEec
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.+..++. +..++..|..|+|||+|+.
T Consensus 153 A~~~al~--~~~~vitGgpGTGKTt~v~ 178 (586)
T TIGR01447 153 AVALALK--SNFSLITGGPGTGKTTTVA 178 (586)
T ss_pred HHHHHhh--CCeEEEEcCCCCCHHHHHH
Confidence 3445555 3455567888999999864
No 413
>KOG1532|consensus
Probab=53.48 E-value=6.9 Score=33.72 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=16.4
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
...||++.|..|||||.=|
T Consensus 18 ~p~~ilVvGMAGSGKTTF~ 36 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFM 36 (366)
T ss_pred CCcEEEEEecCCCCchhHH
Confidence 4679999999999999755
No 414
>PF04466 Terminase_3: Phage terminase large subunit; InterPro: IPR006701 Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possesses an endonuclease and ATPase activity that requires Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences [, ].; GO: 0006323 DNA packaging; PDB: 2WBN_A 2WC9_A.
Probab=53.35 E-value=4.4 Score=36.80 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=0.0
Q ss_pred EeeccCcCCCceeEecC
Q psy37 55 VFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl~G 71 (279)
++++|..|||||+++..
T Consensus 5 ~v~~GGrGS~KS~~~a~ 21 (387)
T PF04466_consen 5 IVLKGGRGSGKSSFIAQ 21 (387)
T ss_dssp -----------------
T ss_pred EEEECCCCchHHHHHHH
Confidence 57899999999999755
No 415
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=53.26 E-value=6 Score=29.60 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=14.3
Q ss_pred eEeeccCcCCCceeEec
Q psy37 54 CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~ 70 (279)
-|+..|.+|||||..+.
T Consensus 3 ki~~~G~~~~GKstl~~ 19 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLN 19 (161)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998763
No 416
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=53.24 E-value=5.1 Score=32.76 Aligned_cols=17 Identities=35% Similarity=0.325 Sum_probs=13.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|.-.|++|||||+.+
T Consensus 7 ~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34667899999999754
No 417
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=53.10 E-value=8.7 Score=36.22 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=22.9
Q ss_pred HHHHHHHhccc---cCeeEeeccCcCCCceeE
Q psy37 40 GMDVVDAAFEG---YNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 40 ~~~lv~~v~~G---~n~~v~~yG~tgSGKT~T 68 (279)
+-+=+|.++.| ....++.+|.+|+|||.-
T Consensus 16 GI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l 47 (509)
T PRK09302 16 GIEGFDDITHGGLPKGRPTLVSGTAGTGKTLF 47 (509)
T ss_pred CchhHHHhhcCCCCCCcEEEEEeCCCCCHHHH
Confidence 33667888865 467899999999999863
No 418
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=53.05 E-value=5.6 Score=33.41 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=11.9
Q ss_pred EeeccCcCCCcee
Q psy37 55 VFAYGQTGSGKTF 67 (279)
Q Consensus 55 v~~yG~tgSGKT~ 67 (279)
|+.+|+.|||||-
T Consensus 2 iLLmG~~~SGKTS 14 (232)
T PF04670_consen 2 ILLMGPRRSGKTS 14 (232)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEEcCCCCChhh
Confidence 6789999999997
No 419
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=53.03 E-value=5.4 Score=34.53 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=13.9
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|..|||||+.-
T Consensus 3 ~liil~G~pGSGKSTla 19 (300)
T PHA02530 3 KIILTVGVPGSGKSTWA 19 (300)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35788999999998753
No 420
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=52.90 E-value=7 Score=34.58 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=26.4
Q ss_pred cCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 22 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 22 fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
||.+.+.+..-.++.+.+ ..+. ..+.-|+-.|.+||||++.-
T Consensus 5 ~~~liG~S~~~~~~~~~i-----~~~a-~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQV-----SRLA-PLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred cCccEECCHHHHHHHHHH-----HHHh-CCCCCEEEECCCCCcHHHHH
Confidence 444555544444443333 2332 45778999999999998864
No 421
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=52.85 E-value=5.6 Score=40.14 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=23.0
Q ss_pred HHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 40 GMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 40 ~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
+..++.-+..+.-..++.+|++|+|||+...|
T Consensus 182 i~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 182 IRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 34455444555556677799999999998876
No 422
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=52.76 E-value=6.2 Score=31.33 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=11.2
Q ss_pred EeeccCcCCCcee
Q psy37 55 VFAYGQTGSGKTF 67 (279)
Q Consensus 55 v~~yG~tgSGKT~ 67 (279)
++..|++|||||.
T Consensus 2 ~li~G~~~sGKS~ 14 (169)
T cd00544 2 ILVTGGARSGKSR 14 (169)
T ss_pred EEEECCCCCCHHH
Confidence 5778999999975
No 423
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=52.65 E-value=6.6 Score=33.04 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
-.++.+|++|||||..+
T Consensus 31 e~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 31 ERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 47888999999999765
No 424
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=52.65 E-value=6.1 Score=34.29 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=12.9
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|+||||||.-.
T Consensus 2 i~i~G~t~~GKs~la 16 (287)
T TIGR00174 2 IFIMGPTAVGKSQLA 16 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999754
No 425
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=52.43 E-value=5.5 Score=36.56 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=14.9
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+.+|++|+|||+..
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999864
No 426
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=52.23 E-value=7.1 Score=37.79 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=16.7
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
-+.-++++|+||||||..+
T Consensus 210 g~~H~lv~ApTgsGKgvg~ 228 (623)
T TIGR02767 210 GSTHMIFFAGSGGFKTTSV 228 (623)
T ss_pred CCceEEEEeCCCCCcccee
Confidence 3568999999999999987
No 427
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=52.19 E-value=6.3 Score=31.30 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=12.7
Q ss_pred eEeeccCcCCCceeE
Q psy37 54 CVFAYGQTGSGKTFT 68 (279)
Q Consensus 54 ~v~~yG~tgSGKT~T 68 (279)
.|+..|++|||||.-
T Consensus 3 ~ili~G~~~sGKS~~ 17 (170)
T PRK05800 3 LILVTGGARSGKSRF 17 (170)
T ss_pred EEEEECCCCccHHHH
Confidence 478899999999863
No 428
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=52.13 E-value=11 Score=38.19 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.4
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
.++++-+|++|+|||++.
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELA 612 (852)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 467889999999999864
No 429
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=52.06 E-value=8.2 Score=31.79 Aligned_cols=16 Identities=44% Similarity=0.534 Sum_probs=13.0
Q ss_pred EeeccCcCCCceeEec
Q psy37 55 VFAYGQTGSGKTFTMM 70 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl~ 70 (279)
|=.+|+.|+|||.|.+
T Consensus 33 VGLLGPNGAGKTT~Fy 48 (243)
T COG1137 33 VGLLGPNGAGKTTTFY 48 (243)
T ss_pred EEEECCCCCCceeEEE
Confidence 4468999999998764
No 430
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=52.06 E-value=7.1 Score=33.29 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=14.0
Q ss_pred CeeEeeccCcCCCcee
Q psy37 52 NACVFAYGQTGSGKTF 67 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~ 67 (279)
..+++.+|++|+|||.
T Consensus 36 gs~~lI~G~pGtGKT~ 51 (259)
T TIGR03878 36 YSVINITGVSDTGKSL 51 (259)
T ss_pred CcEEEEEcCCCCCHHH
Confidence 5678899999999986
No 431
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=51.99 E-value=4.4 Score=33.38 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.7
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|+.|||||.+|
T Consensus 27 i~~ivGpNGaGKSTll 42 (212)
T cd03274 27 FSAIVGPNGSGKSNVI 42 (212)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5567899999999987
No 432
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.88 E-value=9.5 Score=35.82 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=17.5
Q ss_pred ccccCe-eEeeccCcCCCceeEe
Q psy37 48 FEGYNA-CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 48 ~~G~n~-~v~~yG~tgSGKT~Tl 69 (279)
-.|.-. +++.+|+.|+|||.+.
T Consensus 30 ~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 30 TLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred HcCCCCceEEEECCCCccHHHHH
Confidence 355555 8999999999999843
No 433
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=51.86 E-value=9.2 Score=33.31 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=24.1
Q ss_pred HHHHHhHHHHHHHhccccCeeEeeccCcCCCcee
Q psy37 34 QVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF 67 (279)
Q Consensus 34 ~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~ 67 (279)
.-|...+ .-|+.|---..+-++..|+||+||+|
T Consensus 191 p~fnrmi-eqierva~rsr~p~ll~gptgagksf 223 (531)
T COG4650 191 PHFNRMI-EQIERVAIRSRAPILLNGPTGAGKSF 223 (531)
T ss_pred hHHHHHH-HHHHHHHhhccCCeEeecCCCcchhH
Confidence 3444444 45666666667789999999999998
No 434
>KOG0354|consensus
Probab=51.86 E-value=12 Score=36.80 Aligned_cols=25 Identities=44% Similarity=0.650 Sum_probs=20.5
Q ss_pred HHHHHHhccccCeeEeeccCcCCCceeE
Q psy37 41 MDVVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 41 ~~lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
..++..++ |-|..|.+ +||+|||+.
T Consensus 68 ~eivq~AL-gkNtii~l--PTG~GKTfI 92 (746)
T KOG0354|consen 68 EELVQPAL-GKNTIIAL--PTGSGKTFI 92 (746)
T ss_pred HHHhHHhh-cCCeEEEe--ecCCCccch
Confidence 35788888 99887766 999999984
No 435
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=51.80 E-value=7.6 Score=39.40 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=12.2
Q ss_pred eeccCcCCCceeEecC
Q psy37 56 FAYGQTGSGKTFTMMG 71 (279)
Q Consensus 56 ~~yG~tgSGKT~Tl~G 71 (279)
..-=+||||||||+.+
T Consensus 63 ~~~M~TGtGKT~~~~~ 78 (986)
T PRK15483 63 DIKMETGTGKTYVYTR 78 (986)
T ss_pred EEEeCCCCCHHHHHHH
Confidence 3334799999998866
No 436
>PRK13767 ATP-dependent helicase; Provisional
Probab=51.54 E-value=10 Score=38.40 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=17.9
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+..+++|.|+.| ..+||||||...
T Consensus 40 Ai~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 40 AIPLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHHHcCCCEEE--ECCCCCcHHHHH
Confidence 3445578887544 569999999863
No 437
>PRK04296 thymidine kinase; Provisional
Probab=51.38 E-value=3.8 Score=33.14 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=15.2
Q ss_pred eEeeccCcCCCceeEecC
Q psy37 54 CVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~G 71 (279)
.++-+|+.|+|||..+.+
T Consensus 4 i~litG~~GsGKTT~~l~ 21 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQ 21 (190)
T ss_pred EEEEECCCCCHHHHHHHH
Confidence 567899999999987765
No 438
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=51.35 E-value=7.3 Score=30.90 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.6
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|++|||||...
T Consensus 5 ~~I~liG~~GaGKStl~ 21 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIG 21 (172)
T ss_pred CEEEEECCCCcCHHHHH
Confidence 46889999999999765
No 439
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=51.30 E-value=6.1 Score=36.42 Aligned_cols=18 Identities=39% Similarity=0.528 Sum_probs=15.8
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...++..|.+|+|||.|.
T Consensus 99 p~vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTC 116 (428)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 467899999999999985
No 440
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=51.26 E-value=3.3 Score=33.88 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=10.2
Q ss_pred CcCCCceeEecC
Q psy37 60 QTGSGKTFTMMG 71 (279)
Q Consensus 60 ~tgSGKT~Tl~G 71 (279)
..|.||||.|.-
T Consensus 13 apGVGKTy~ML~ 24 (211)
T PF02702_consen 13 APGVGKTYAMLQ 24 (211)
T ss_dssp STTSSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 579999999954
No 441
>KOG0924|consensus
Probab=51.11 E-value=6.6 Score=38.05 Aligned_cols=20 Identities=45% Similarity=0.567 Sum_probs=17.7
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
+-|..|+..|.||||||.-+
T Consensus 369 r~n~vvvivgETGSGKTTQl 388 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQL 388 (1042)
T ss_pred hhCcEEEEEecCCCCchhhh
Confidence 66888999999999999876
No 442
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=51.01 E-value=7 Score=33.01 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=12.9
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
-++.-|++|||||-.+
T Consensus 15 r~viIG~sGSGKT~li 30 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLI 30 (241)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4556799999999865
No 443
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=51.01 E-value=4.6 Score=32.36 Aligned_cols=17 Identities=41% Similarity=0.763 Sum_probs=14.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
-|+...|++|+||+..|
T Consensus 38 ECvvL~G~SG~GKStll 54 (235)
T COG4778 38 ECVVLHGPSGSGKSTLL 54 (235)
T ss_pred cEEEeeCCCCCcHHHHH
Confidence 38889999999999744
No 444
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=50.96 E-value=6.3 Score=31.45 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=13.8
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.++..|++|||||+.+
T Consensus 5 ~i~l~G~sGsGKSTl~ 20 (176)
T PRK09825 5 SYILMGVSGSGKSLIG 20 (176)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778999999999865
No 445
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=50.85 E-value=5.1 Score=34.01 Aligned_cols=20 Identities=30% Similarity=0.655 Sum_probs=17.0
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
-....|+..|.+|+|||.++
T Consensus 29 ~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred cCCeEEEEECCCCCcHHHHH
Confidence 45568899999999999986
No 446
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=50.78 E-value=3.7 Score=33.94 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=13.8
Q ss_pred EeeccCcCCCceeEecC
Q psy37 55 VFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl~G 71 (279)
|+..|..|||||+.+.-
T Consensus 1 ~vv~G~pGsGKSt~i~~ 17 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKK 17 (234)
T ss_pred CEEEcCCCCCHHHHHHH
Confidence 46789999999997743
No 447
>PLN02200 adenylate kinase family protein
Probab=50.72 E-value=7.5 Score=32.61 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=22.2
Q ss_pred CeeEeeccCcCCCceeEecCCCCCCCCCCCccccc
Q psy37 52 NACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDF 86 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l 86 (279)
...|+..|++|||||..----....|+......++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdl 77 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDL 77 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHH
Confidence 34789999999999875322123345555555555
No 448
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=50.71 E-value=5.7 Score=33.49 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=13.2
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|..|||||..-
T Consensus 2 Ivl~G~pGSGKST~a 16 (249)
T TIGR03574 2 IILTGLPGVGKSTFS 16 (249)
T ss_pred EEEEcCCCCCHHHHH
Confidence 788999999999865
No 449
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=50.70 E-value=5.9 Score=31.69 Aligned_cols=15 Identities=47% Similarity=0.426 Sum_probs=12.3
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|..-|.+|||||+..
T Consensus 2 i~i~G~sgsGKttla 16 (179)
T cd02028 2 VGIAGPSGSGKTTFA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999865
No 450
>KOG0744|consensus
Probab=50.68 E-value=8.8 Score=33.94 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=16.3
Q ss_pred cCeeEeeccCcCCCceeEecC
Q psy37 51 YNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.|-.|+..||.|+|||....|
T Consensus 176 ~NRliLlhGPPGTGKTSLCKa 196 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKA 196 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHH
Confidence 344677899999999987655
No 451
>PLN02165 adenylate isopentenyltransferase
Probab=50.68 E-value=7.1 Score=34.62 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=17.2
Q ss_pred ccccCeeEeeccCcCCCceeEec
Q psy37 48 FEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 48 ~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.+.-.-.|+-.|+||||||....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~ 61 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSV 61 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHH
Confidence 44444478889999999997653
No 452
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=50.58 E-value=7 Score=30.14 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=12.9
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|++|||||..+
T Consensus 4 imliG~~g~GKTTL~ 18 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLA 18 (143)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999755
No 453
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=50.52 E-value=8.7 Score=33.99 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=23.2
Q ss_pred CCCHHHHHHHh-HHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 29 FASQEQVFNDL-GMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 29 ~~~q~~vy~~~-~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
..+..-+|+.- ...++..+.. +.-|+..|++|+|||...
T Consensus 42 ~~d~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 42 DIDPAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCCCCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 33444444422 2333433333 446999999999999865
No 454
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=50.33 E-value=9.3 Score=37.18 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=16.5
Q ss_pred CeeEeeccCcCCCceeEec
Q psy37 52 NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~ 70 (279)
+.-++++|+||||||..+.
T Consensus 175 ~~HvlviapTgSGKgvg~V 193 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLV 193 (636)
T ss_pred CceEEEEecCCCCCceEEE
Confidence 4569999999999999874
No 455
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=50.27 E-value=6.8 Score=34.87 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=12.5
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..++||||||.+.
T Consensus 2 vvi~apTGsGKT~~~ 16 (358)
T TIGR01587 2 LVIEAPTGYGKTEAA 16 (358)
T ss_pred EEEEeCCCCCHHHHH
Confidence 577899999999763
No 456
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=50.20 E-value=5 Score=32.98 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=15.0
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
+..+.-.|++|||||..|
T Consensus 28 ~~~~~i~G~NGsGKSTll 45 (213)
T cd03279 28 NGLFLICGPTGAGKSTIL 45 (213)
T ss_pred cCEEEEECCCCCCHHHHH
Confidence 446778999999999876
No 457
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=50.15 E-value=4.4 Score=35.22 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=15.4
Q ss_pred eEeeccCcCCCceeEecC
Q psy37 54 CVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~G 71 (279)
.|+..|.+|||||..+.-
T Consensus 8 ~i~i~G~~GsGKtt~~~~ 25 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRA 25 (288)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 688899999999998743
No 458
>PRK14737 gmk guanylate kinase; Provisional
Probab=50.05 E-value=7.7 Score=31.26 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
-.|+..|++|||||..+
T Consensus 5 ~~ivl~GpsG~GK~tl~ 21 (186)
T PRK14737 5 KLFIISSVAGGGKSTII 21 (186)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35888999999999765
No 459
>PRK01184 hypothetical protein; Provisional
Probab=50.05 E-value=6.2 Score=31.44 Aligned_cols=15 Identities=33% Similarity=0.288 Sum_probs=12.8
Q ss_pred eEeeccCcCCCceeE
Q psy37 54 CVFAYGQTGSGKTFT 68 (279)
Q Consensus 54 ~v~~yG~tgSGKT~T 68 (279)
.|+..|+.|||||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (184)
T PRK01184 3 IIGVVGMPGSGKGEF 17 (184)
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999983
No 460
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.94 E-value=15 Score=34.43 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=23.1
Q ss_pred CHHHHHHHhHHHHHHHhcccc-CeeEeeccCcCCCceeEe
Q psy37 31 SQEQVFNDLGMDVVDAAFEGY-NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G~-n~~v~~yG~tgSGKT~Tl 69 (279)
.|+.+... +...+-.|. ..+++-||+.|+|||.+.
T Consensus 22 GQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 22 HQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIA 57 (484)
T ss_pred ChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 56665543 233333454 346899999999999765
No 461
>KOG0736|consensus
Probab=49.85 E-value=7.5 Score=38.23 Aligned_cols=45 Identities=18% Similarity=0.387 Sum_probs=28.2
Q ss_pred CCCCCCCCCHHHHHHHhHHHHHHH--hccccC--eeEeeccCcCCCcee
Q psy37 23 DPSSPQFASQEQVFNDLGMDVVDA--AFEGYN--ACVFAYGQTGSGKTF 67 (279)
Q Consensus 23 d~vf~~~~~q~~vy~~~~~~lv~~--v~~G~n--~~v~~yG~tgSGKT~ 67 (279)
|.|=+-+.--.+|-+.+..|+-.- +-.|.- +-|+.||+.|+|||-
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTL 720 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTL 720 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHH
Confidence 333333444556666665554432 224554 779999999999986
No 462
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=49.83 E-value=7.2 Score=29.62 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=13.0
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|+.|+|||.-+
T Consensus 2 i~i~G~~~~GKTsli 16 (160)
T cd00876 2 VVVLGAGGVGKSAIT 16 (160)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999865
No 463
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=49.60 E-value=4.8 Score=40.53 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.6
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
-|...+..|.||||||+++
T Consensus 448 ~N~N~~I~G~sGsGKS~l~ 466 (844)
T PRK13721 448 TNYNMAVCGTSGAGKTGLI 466 (844)
T ss_pred CcccEEEEcCCCCCHHHHH
Confidence 3567899999999999988
No 464
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=49.56 E-value=4.5 Score=31.58 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=12.0
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|...|.+|||||..+
T Consensus 2 i~i~G~~gsGKTtl~ 16 (155)
T TIGR00176 2 LQIVGPKNSGKTTLI 16 (155)
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999876
No 465
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=49.48 E-value=6.4 Score=39.09 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.5
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
...++-+|++|+|||+...|
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 44567799999999998866
No 466
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=49.48 E-value=12 Score=32.64 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=15.3
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
....|---|++|||||.++
T Consensus 61 ~p~IIGIaG~~GSGKSTla 79 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTA 79 (290)
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3456667899999999987
No 467
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=49.41 E-value=15 Score=32.38 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=23.1
Q ss_pred HHHHHHHhcccc---CeeEeeccCcCCCceeEec
Q psy37 40 GMDVVDAAFEGY---NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 40 ~~~lv~~v~~G~---n~~v~~yG~tgSGKT~Tl~ 70 (279)
+-+-+|.++.|- ...+..||+.|+|||..+.
T Consensus 81 g~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~ 114 (316)
T TIGR02239 81 GSKELDKLLGGGIETGSITEIFGEFRTGKTQLCH 114 (316)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHH
Confidence 346788877653 4567899999999997653
No 468
>PRK05480 uridine/cytidine kinase; Provisional
Probab=49.33 E-value=8.6 Score=31.35 Aligned_cols=19 Identities=32% Similarity=0.270 Sum_probs=14.7
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
..-.|.--|++|||||+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVA 23 (209)
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3445777899999999765
No 469
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=49.33 E-value=5.8 Score=34.15 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=15.7
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
-.+..+|++|+|||.++.
T Consensus 76 ~~i~~~G~~g~GKTtl~~ 93 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLA 93 (270)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 578899999999999874
No 470
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=49.18 E-value=14 Score=37.54 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=18.6
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+....-.+...-++..|+||||||.+.
T Consensus 463 I~~d~~~~~~~d~Ll~adTGsGKT~va 489 (926)
T TIGR00580 463 IKADMESPRPMDRLVCGDVGFGKTEVA 489 (926)
T ss_pred HHhhhcccCcCCEEEECCCCccHHHHH
Confidence 333333444456789999999999754
No 471
>PRK05541 adenylylsulfate kinase; Provisional
Probab=49.15 E-value=8 Score=30.53 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.2
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|.+|||||...
T Consensus 8 ~~I~i~G~~GsGKst~a 24 (176)
T PRK05541 8 YVIWITGLAGSGKTTIA 24 (176)
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36888999999998764
No 472
>PF14553 YqbF: YqbF, hypothetical protein domain; PDB: 2HJQ_A.
Probab=49.01 E-value=9.8 Score=22.72 Aligned_cols=8 Identities=63% Similarity=1.070 Sum_probs=6.6
Q ss_pred CceeEecC
Q psy37 64 GKTFTMMG 71 (279)
Q Consensus 64 GKT~Tl~G 71 (279)
||||+.+|
T Consensus 3 GktY~~~g 10 (43)
T PF14553_consen 3 GKTYYAMG 10 (43)
T ss_dssp -SEEEETT
T ss_pred CcEEEEee
Confidence 89999988
No 473
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=49.00 E-value=6.9 Score=38.75 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=14.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+.||++|+|||+..
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35888999999999865
No 474
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=49.00 E-value=11 Score=31.03 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=12.7
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
-.|+.+|+.|+|||...
T Consensus 23 h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp --EEEES-CCCTHHHHH
T ss_pred CCeEEECCCCCCHHHHH
Confidence 58999999999998765
No 475
>KOG0330|consensus
Probab=48.97 E-value=11 Score=34.02 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=17.2
Q ss_pred ccchhHHHHhHhhcCCCceEEEEEE
Q psy37 200 YRDSVLTWLLKDSLGGNSKTIMIAA 224 (279)
Q Consensus 200 yr~SkLT~lL~~~l~g~~~~~~i~~ 224 (279)
|+++-|..||++..| ++++|+|
T Consensus 286 ~K~~yLV~ll~e~~g---~s~iVF~ 307 (476)
T KOG0330|consen 286 DKDTYLVYLLNELAG---NSVIVFC 307 (476)
T ss_pred ccchhHHHHHHhhcC---CcEEEEE
Confidence 888999999998886 4555555
No 476
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=48.87 E-value=7.6 Score=29.66 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.3
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
-|+.+|.+|+|||..+
T Consensus 2 ki~~~G~~~~GKTsl~ 17 (164)
T cd04139 2 KVIVVGAGGVGKSALT 17 (164)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999764
No 477
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=48.63 E-value=7.9 Score=29.35 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=14.2
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|...|.+|+|||..+
T Consensus 4 ~~i~~~G~~g~GKttl~ 20 (168)
T cd04163 4 GFVAIVGRPNVGKSTLL 20 (168)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999866
No 478
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=48.59 E-value=7.5 Score=35.41 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=16.1
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
...+++-+|+.|+|||...
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA 53 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAA 53 (394)
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 5778999999999998543
No 479
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=48.59 E-value=5.4 Score=39.42 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=16.4
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
.+.++..+..|||||.||..
T Consensus 22 ~g~~lV~AgaGSGKT~vl~~ 41 (721)
T PRK11773 22 LGNMLVLAGAGSGKTRVLVH 41 (721)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 45677888899999999965
No 480
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=48.47 E-value=4.8 Score=40.36 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=14.6
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
+..+.+|+||||||+.|
T Consensus 442 gn~~I~G~tGsGKS~l~ 458 (811)
T PRK13873 442 GHTLVVGPTGAGKSVLL 458 (811)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35677999999999987
No 481
>PTZ00088 adenylate kinase 1; Provisional
Probab=48.45 E-value=7.9 Score=32.39 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=20.3
Q ss_pred EeeccCcCCCceeEecCCCCCCCCCCCccccc
Q psy37 55 VFAYGQTGSGKTFTMMGSKATTDNSPDAHKDF 86 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l 86 (279)
|+.+|+.|||||..--=-....|+......++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~is~gdl 40 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHINMGNI 40 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEECChH
Confidence 88899999999753211122345655566666
No 482
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=48.27 E-value=9.5 Score=37.12 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=16.2
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
+.-++++|+||||||..+
T Consensus 224 ~~H~Lv~ApTgsGKt~g~ 241 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSV 241 (641)
T ss_pred CceEEEEeCCCCCccceE
Confidence 568899999999999976
No 483
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=48.09 E-value=5.5 Score=31.27 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=11.3
Q ss_pred ccCcCCCceeEec
Q psy37 58 YGQTGSGKTFTMM 70 (279)
Q Consensus 58 yG~tgSGKT~Tl~ 70 (279)
.|.+|||||+.+.
T Consensus 1 ~G~sGsGKSTla~ 13 (163)
T PRK11545 1 MGVSGSGKSAVAS 13 (163)
T ss_pred CCCCCCcHHHHHH
Confidence 4999999999875
No 484
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=48.03 E-value=9.5 Score=29.20 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=14.3
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+.+|.+|+|||.-+
T Consensus 2 ~ki~v~G~~~~GKSsli 18 (163)
T cd01860 2 FKLVLLGDSSVGKSSLV 18 (163)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999765
No 485
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=47.99 E-value=16 Score=32.66 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=22.6
Q ss_pred HHHHHHHhcccc---CeeEeeccCcCCCceeEe
Q psy37 40 GMDVVDAAFEGY---NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 40 ~~~lv~~v~~G~---n~~v~~yG~tgSGKT~Tl 69 (279)
+-+-+|.++.|- ...+..||.+|+|||.-.
T Consensus 108 G~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~ 140 (342)
T PLN03186 108 GSRELDKILEGGIETGSITEIYGEFRTGKTQLC 140 (342)
T ss_pred CCHHHHHhhcCCCcCceEEEEECCCCCCccHHH
Confidence 346788888753 446779999999999754
No 486
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=47.96 E-value=5 Score=32.09 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=14.1
Q ss_pred eEeeccCcCCCceeEec
Q psy37 54 CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~ 70 (279)
.+...|++|||||..|.
T Consensus 23 ~~~l~G~nG~GKSTLl~ 39 (176)
T cd03238 23 LVVVTGVSGSGKSTLVN 39 (176)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45678999999998773
No 487
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=47.86 E-value=20 Score=31.77 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.8
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
+.-..|+..|-.|+|||.|+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTI 156 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTI 156 (340)
T ss_pred CCcEEEEEEecCCCchHhHH
Confidence 45678999999999999998
No 488
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=47.72 E-value=8.8 Score=31.36 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=15.0
Q ss_pred eEeeccCcCCCceeEec
Q psy37 54 CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~ 70 (279)
+++-+|++|||||..+.
T Consensus 24 ~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 24 LTLIVGQNGAGKTTIIE 40 (204)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 88899999999998763
No 489
>PRK11823 DNA repair protein RadA; Provisional
Probab=47.70 E-value=12 Score=34.63 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=23.7
Q ss_pred HHHHHHHhcccc---CeeEeeccCcCCCceeEe
Q psy37 40 GMDVVDAAFEGY---NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 40 ~~~lv~~v~~G~---n~~v~~yG~tgSGKT~Tl 69 (279)
+-+=+|.++.|- ...++.+|++|+|||..+
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~ 97 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLL 97 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHH
Confidence 346788888753 668899999999999854
No 490
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=47.56 E-value=11 Score=37.02 Aligned_cols=35 Identities=29% Similarity=0.195 Sum_probs=23.4
Q ss_pred CCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 29 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 29 ~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+..|+..++.+.. .+ |.....+-+|-||||||-..
T Consensus 200 n~~Q~~a~~~i~~----~~--~~~~~~Ll~GvTGSGKTEvY 234 (730)
T COG1198 200 NQEQQAAVEAILS----SL--GGFAPFLLDGVTGSGKTEVY 234 (730)
T ss_pred CHHHHHHHHHHHH----hc--ccccceeEeCCCCCcHHHHH
Confidence 4455555554443 22 56677788999999999654
No 491
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=47.56 E-value=5.8 Score=39.24 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=17.1
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
++.++..|..|||||.||..
T Consensus 17 ~g~~lV~AgaGSGKT~~l~~ 36 (726)
T TIGR01073 17 EGPLLIMAGAGSGKTRVLTH 36 (726)
T ss_pred CCCEEEEeCCCCCHHHHHHH
Confidence 56688889999999999965
No 492
>PRK09401 reverse gyrase; Reviewed
Probab=47.44 E-value=15 Score=38.45 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=17.8
Q ss_pred HHHHhccccCeeEeeccCcCCCcee
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTF 67 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~ 67 (279)
.+..++.|.|..+.| +||||||.
T Consensus 88 ~i~~il~g~dv~i~A--pTGsGKT~ 110 (1176)
T PRK09401 88 WAKRLLLGESFAIIA--PTGVGKTT 110 (1176)
T ss_pred HHHHHHCCCcEEEEc--CCCCCHHH
Confidence 455678898776664 99999995
No 493
>PRK13947 shikimate kinase; Provisional
Probab=47.31 E-value=7.3 Score=30.48 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=12.9
Q ss_pred eEeeccCcCCCceeE
Q psy37 54 CVFAYGQTGSGKTFT 68 (279)
Q Consensus 54 ~v~~yG~tgSGKT~T 68 (279)
.|+..|..|||||+.
T Consensus 3 ~I~l~G~~GsGKst~ 17 (171)
T PRK13947 3 NIVLIGFMGTGKTTV 17 (171)
T ss_pred eEEEEcCCCCCHHHH
Confidence 478899999999875
No 494
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=47.29 E-value=11 Score=29.37 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=15.5
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
....|+-.|++|+|||.+.
T Consensus 13 ~g~gvLi~G~sG~GKStla 31 (149)
T cd01918 13 GGIGVLITGPSGIGKSELA 31 (149)
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 4568899999999999544
No 495
>PRK13531 regulatory ATPase RavA; Provisional
Probab=47.17 E-value=12 Score=35.02 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=15.9
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
.+..|+-+|++|+|||+..
T Consensus 38 ag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred cCCCEEEECCCChhHHHHH
Confidence 4567889999999999865
No 496
>KOG0922|consensus
Probab=47.14 E-value=9.8 Score=36.59 Aligned_cols=19 Identities=37% Similarity=0.600 Sum_probs=16.1
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
-|..++.-|.||||||.-+
T Consensus 65 ~nqvlIviGeTGsGKSTQi 83 (674)
T KOG0922|consen 65 DNQVLIVIGETGSGKSTQI 83 (674)
T ss_pred HCCEEEEEcCCCCCccccH
Confidence 4677888899999999876
No 497
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=47.07 E-value=9.5 Score=31.88 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=15.4
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...++.+|++|+|||...
T Consensus 24 g~~~~i~G~~G~GKTtl~ 41 (230)
T PRK08533 24 GSLILIEGDESTGKSILS 41 (230)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 348999999999999873
No 498
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=47.01 E-value=6.1 Score=39.02 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=16.3
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
.+.++..+..|||||.||..
T Consensus 17 ~g~~lV~AgaGSGKT~~L~~ 36 (715)
T TIGR01075 17 PGNLLVLAGAGSGKTRVLTH 36 (715)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 35677788889999999965
No 499
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=46.98 E-value=5.7 Score=36.02 Aligned_cols=17 Identities=41% Similarity=0.583 Sum_probs=14.6
Q ss_pred eEeeccCcCCCceeEec
Q psy37 54 CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~ 70 (279)
-++++|..|||||+++.
T Consensus 3 ~~i~~GgrgSGKS~~~~ 19 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIA 19 (396)
T ss_pred eEEEeCCCCcccHHHHH
Confidence 46899999999999874
No 500
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=46.93 E-value=7.3 Score=31.49 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=10.9
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
.+-.|..|||||+.+
T Consensus 3 ~~~~G~pGsGKS~~a 17 (193)
T PF05707_consen 3 YLITGKPGSGKSYYA 17 (193)
T ss_dssp EEEE--TTSSHHHHH
T ss_pred EEEEcCCCCcHhHHH
Confidence 567899999999965
Done!