Query psy37
Match_columns 279
No_of_seqs 136 out of 1249
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 23:19:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy37.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/37hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cob_A Kinesin heavy chain-lik 100.0 5.2E-62 1.8E-66 430.0 7.2 238 18-277 47-354 (369)
2 2y65_A Kinesin, kinesin heavy 100.0 1.6E-61 5.4E-66 426.8 9.4 246 12-275 45-361 (365)
3 3b6u_A Kinesin-like protein KI 100.0 8E-62 2.7E-66 428.8 6.9 230 19-267 69-372 (372)
4 3bfn_A Kinesin-like protein KI 100.0 4.8E-62 1.7E-66 431.4 4.2 240 18-273 65-372 (388)
5 2vvg_A Kinesin-2; motor protei 100.0 2.8E-61 9.6E-66 423.0 6.2 225 18-261 56-348 (350)
6 2owm_A Nckin3-434, related to 100.0 7.3E-60 2.5E-64 425.5 10.8 240 10-263 95-429 (443)
7 1x88_A Kinesin-like protein KI 100.0 3.5E-60 1.2E-64 418.1 8.4 218 18-256 55-358 (359)
8 1t5c_A CENP-E protein, centrom 100.0 5.6E-60 1.9E-64 415.0 8.8 225 18-262 44-342 (349)
9 1goj_A Kinesin, kinesin heavy 100.0 8.1E-60 2.8E-64 414.9 9.6 226 19-262 48-344 (355)
10 2wbe_C Bipolar kinesin KRP-130 100.0 6.4E-60 2.2E-64 418.1 7.3 219 19-258 68-371 (373)
11 2zfi_A Kinesin-like protein KI 100.0 2.4E-59 8.2E-64 413.8 6.6 233 10-256 47-362 (366)
12 3dc4_A Kinesin-like protein NO 100.0 9E-59 3.1E-63 406.2 8.2 228 9-253 52-340 (344)
13 3nwn_A Kinesin-like protein KI 100.0 5.9E-59 2E-63 409.6 5.4 210 19-248 73-359 (359)
14 3gbj_A KIF13B protein; kinesin 100.0 4.7E-58 1.6E-62 403.9 9.8 225 9-247 49-349 (354)
15 1bg2_A Kinesin; motor protein, 100.0 4.2E-58 1.5E-62 399.8 7.8 217 13-248 39-325 (325)
16 1f9v_A Kinesin-like protein KA 100.0 7.8E-58 2.7E-62 401.5 9.5 218 18-253 52-346 (347)
17 2h58_A Kinesin-like protein KI 100.0 4.8E-58 1.6E-62 400.3 7.3 211 19-249 49-329 (330)
18 3lre_A Kinesin-like protein KI 100.0 4.4E-58 1.5E-62 404.2 6.7 214 19-248 73-355 (355)
19 1ry6_A Internal kinesin; kines 100.0 1.6E-57 5.4E-62 400.6 8.8 220 18-256 50-339 (360)
20 3t0q_A AGR253WP; kinesin, alph 100.0 3.2E-57 1.1E-61 398.3 8.9 216 19-252 54-348 (349)
21 2rep_A Kinesin-like protein KI 100.0 2E-57 7E-62 401.6 7.3 211 19-248 84-376 (376)
22 4etp_A Kinesin-like protein KA 100.0 5.8E-57 2E-61 403.3 9.3 217 19-253 109-402 (403)
23 2nr8_A Kinesin-like protein KI 100.0 3.8E-57 1.3E-61 397.9 6.9 210 19-248 72-358 (358)
24 4a14_A Kinesin, kinesin-like p 100.0 6.7E-57 2.3E-61 395.8 7.3 212 18-246 50-344 (344)
25 2heh_A KIF2C protein; kinesin, 100.0 1.1E-56 3.7E-61 397.1 7.7 216 18-251 101-385 (387)
26 3u06_A Protein claret segregat 100.0 8.9E-57 3E-61 402.0 5.0 219 17-254 105-388 (412)
27 1v8k_A Kinesin-like protein KI 100.0 1.2E-56 4.1E-61 399.1 5.1 218 18-253 121-407 (410)
28 4h1g_A Maltose binding protein 100.0 2.6E-53 8.7E-58 408.1 8.1 214 16-249 428-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 4.4E-32 1.5E-36 193.6 6.8 98 170-270 1-99 (100)
30 3kin_B Kinesin heavy chain; mo 100.0 1.2E-29 4.1E-34 187.5 10.1 85 174-261 1-85 (117)
31 2o0a_A S.cerevisiae chromosome 99.5 5E-16 1.7E-20 129.2 -1.5 192 18-255 57-296 (298)
32 3ec2_A DNA replication protein 96.4 0.001 3.5E-08 52.1 1.6 50 20-70 7-56 (180)
33 2w58_A DNAI, primosome compone 95.4 0.0084 2.9E-07 47.6 2.9 50 20-70 22-72 (202)
34 2qgz_A Helicase loader, putati 95.2 0.006 2.1E-07 52.3 1.6 51 20-71 121-171 (308)
35 2owm_A Nckin3-434, related to 93.6 0.025 8.5E-07 50.9 2.0 63 84-146 96-158 (443)
36 2r62_A Cell division protease 92.8 0.079 2.7E-06 43.8 3.8 50 20-70 8-62 (268)
37 2p65_A Hypothetical protein PF 92.6 0.039 1.3E-06 42.5 1.5 29 42-70 33-61 (187)
38 1jbk_A CLPB protein; beta barr 92.3 0.072 2.5E-06 41.0 2.7 28 42-69 33-60 (195)
39 3t15_A Ribulose bisphosphate c 91.7 0.057 1.9E-06 45.7 1.5 38 32-69 12-53 (293)
40 2zfi_A Kinesin-like protein KI 91.7 0.067 2.3E-06 46.9 2.0 62 85-146 49-111 (366)
41 1l8q_A Chromosomal replication 91.5 0.085 2.9E-06 45.1 2.5 48 20-70 8-55 (324)
42 3bos_A Putative DNA replicatio 91.3 0.14 4.8E-06 41.1 3.5 45 20-70 25-70 (242)
43 2bjv_A PSP operon transcriptio 91.3 0.061 2.1E-06 44.5 1.3 44 20-69 3-46 (265)
44 3gbj_A KIF13B protein; kinesin 91.2 0.083 2.8E-06 46.1 2.0 62 85-146 52-114 (354)
45 3te6_A Regulatory protein SIR3 91.1 0.066 2.2E-06 46.0 1.3 22 48-69 41-62 (318)
46 1ixz_A ATP-dependent metallopr 90.6 0.074 2.5E-06 43.7 1.2 17 54-70 51-67 (254)
47 2kjq_A DNAA-related protein; s 90.5 0.069 2.4E-06 40.3 0.8 20 52-71 36-55 (149)
48 3cf0_A Transitional endoplasmi 90.5 0.11 3.8E-06 44.0 2.2 50 20-69 12-66 (301)
49 3h4m_A Proteasome-activating n 90.4 0.11 3.7E-06 43.4 2.0 51 20-70 14-69 (285)
50 3dc4_A Kinesin-like protein NO 89.9 0.13 4.4E-06 44.6 2.1 46 101-146 71-116 (344)
51 3nwn_A Kinesin-like protein KI 89.9 0.11 3.7E-06 45.4 1.6 44 103-146 83-126 (359)
52 1d2n_A N-ethylmaleimide-sensit 89.8 0.18 6.2E-06 41.8 3.0 21 49-69 61-81 (272)
53 1bg2_A Kinesin; motor protein, 89.7 0.092 3.2E-06 45.2 1.0 45 102-146 55-99 (325)
54 1g8p_A Magnesium-chelatase 38 89.4 0.13 4.4E-06 44.2 1.8 43 19-69 20-62 (350)
55 2y65_A Kinesin, kinesin heavy 89.3 0.1 3.5E-06 45.7 1.0 46 101-146 61-106 (365)
56 1t5c_A CENP-E protein, centrom 88.9 0.1 3.5E-06 45.4 0.8 45 102-146 55-99 (349)
57 3lre_A Kinesin-like protein KI 88.8 0.091 3.1E-06 45.8 0.4 47 100-146 81-127 (355)
58 3d8b_A Fidgetin-like protein 1 88.8 0.1 3.6E-06 45.4 0.8 49 21-69 82-134 (357)
59 1x88_A Kinesin-like protein KI 88.8 0.084 2.9E-06 46.1 0.1 47 101-147 65-111 (359)
60 2vvg_A Kinesin-2; motor protei 88.8 0.096 3.3E-06 45.6 0.5 46 101-146 66-111 (350)
61 3b6u_A Kinesin-like protein KI 88.6 0.11 3.9E-06 45.4 0.9 45 102-146 79-123 (372)
62 2chg_A Replication factor C sm 88.4 0.15 5E-06 40.2 1.3 21 49-69 35-55 (226)
63 3b9p_A CG5977-PA, isoform A; A 88.4 0.13 4.6E-06 43.1 1.1 49 21-69 19-71 (297)
64 1iy2_A ATP-dependent metallopr 88.3 0.14 4.7E-06 42.8 1.1 17 54-70 75-91 (278)
65 3bfn_A Kinesin-like protein KI 88.3 0.11 3.7E-06 45.9 0.5 45 102-146 76-120 (388)
66 1xwi_A SKD1 protein; VPS4B, AA 88.3 0.15 5E-06 43.8 1.3 49 21-69 10-62 (322)
67 2v1u_A Cell division control p 88.3 0.1 3.5E-06 45.3 0.4 39 31-70 23-62 (387)
68 1p9r_A General secretion pathw 88.2 0.14 4.9E-06 45.6 1.3 30 42-71 157-186 (418)
69 1v8k_A Kinesin-like protein KI 88.2 0.097 3.3E-06 46.5 0.1 45 101-145 131-175 (410)
70 2heh_A KIF2C protein; kinesin, 88.2 0.11 3.7E-06 45.8 0.4 46 101-146 111-156 (387)
71 4b4t_M 26S protease regulatory 88.1 0.22 7.5E-06 44.6 2.4 50 20-69 178-232 (434)
72 3uk6_A RUVB-like 2; hexameric 88.1 0.19 6.5E-06 43.5 1.9 39 31-70 48-88 (368)
73 1goj_A Kinesin, kinesin heavy 88.0 0.11 3.7E-06 45.3 0.4 45 102-146 58-102 (355)
74 3eie_A Vacuolar protein sortin 88.0 0.17 5.8E-06 43.3 1.5 51 20-70 15-69 (322)
75 2wbe_C Bipolar kinesin KRP-130 87.9 0.11 3.6E-06 45.7 0.2 46 102-147 78-123 (373)
76 2qz4_A Paraplegin; AAA+, SPG7, 87.9 0.18 6.2E-06 41.2 1.6 20 51-70 38-57 (262)
77 4a14_A Kinesin, kinesin-like p 87.8 0.12 4.2E-06 44.8 0.5 46 101-146 60-105 (344)
78 1qde_A EIF4A, translation init 87.3 0.25 8.7E-06 39.4 2.1 24 43-68 44-67 (224)
79 1fnn_A CDC6P, cell division co 87.2 0.38 1.3E-05 41.7 3.4 39 31-70 21-62 (389)
80 2z4s_A Chromosomal replication 87.0 0.26 8.7E-06 44.3 2.2 47 20-70 102-148 (440)
81 1vec_A ATP-dependent RNA helic 86.9 0.31 1.1E-05 38.2 2.5 25 43-69 33-57 (206)
82 2gxq_A Heat resistant RNA depe 86.7 0.29 9.8E-06 38.4 2.1 24 43-68 31-54 (207)
83 3jvv_A Twitching mobility prot 86.3 0.18 6.1E-06 44.0 0.7 28 43-70 114-141 (356)
84 3bor_A Human initiation factor 86.3 0.22 7.5E-06 40.4 1.2 26 42-69 59-84 (237)
85 1u0j_A DNA replication protein 86.2 0.32 1.1E-05 40.6 2.2 28 42-69 91-121 (267)
86 2nr8_A Kinesin-like protein KI 86.2 0.26 8.8E-06 43.0 1.6 45 103-147 82-126 (358)
87 3ly5_A ATP-dependent RNA helic 85.9 0.25 8.5E-06 40.8 1.4 25 42-68 83-107 (262)
88 3dkp_A Probable ATP-dependent 85.8 0.33 1.1E-05 39.4 2.1 24 43-68 59-82 (245)
89 1sxj_D Activator 1 41 kDa subu 85.2 0.34 1.2E-05 41.4 2.0 42 20-69 34-75 (353)
90 1lv7_A FTSH; alpha/beta domain 84.6 0.19 6.6E-06 41.2 0.1 18 52-69 45-62 (257)
91 1tue_A Replication protein E1; 84.6 0.27 9.2E-06 39.4 0.9 28 43-70 47-76 (212)
92 2qp9_X Vacuolar protein sortin 84.6 0.31 1.1E-05 42.3 1.4 50 20-69 48-101 (355)
93 3syl_A Protein CBBX; photosynt 84.5 0.46 1.6E-05 39.9 2.4 20 50-69 65-84 (309)
94 3vfd_A Spastin; ATPase, microt 84.5 0.25 8.5E-06 43.4 0.8 51 20-70 112-166 (389)
95 1sxj_C Activator 1 40 kDa subu 84.5 0.31 1.1E-05 41.9 1.4 42 21-70 23-64 (340)
96 2x8a_A Nuclear valosin-contain 84.4 0.17 5.8E-06 42.3 -0.3 49 21-69 8-61 (274)
97 2pl3_A Probable ATP-dependent 84.3 0.43 1.5E-05 38.4 2.1 26 42-69 54-79 (236)
98 2eyu_A Twitching motility prot 84.3 0.26 8.9E-06 40.9 0.8 20 51-70 24-43 (261)
99 2c9o_A RUVB-like 1; hexameric 84.0 0.35 1.2E-05 43.5 1.5 39 31-70 41-81 (456)
100 3cob_A Kinesin heavy chain-lik 83.8 0.24 8.1E-06 43.4 0.3 44 102-146 58-101 (369)
101 3co5_A Putative two-component 83.5 0.43 1.5E-05 35.4 1.6 20 51-70 26-45 (143)
102 1t6n_A Probable ATP-dependent 83.5 0.49 1.7E-05 37.6 2.1 26 42-69 43-68 (220)
103 3iuy_A Probable ATP-dependent 83.4 0.49 1.7E-05 37.8 2.1 25 43-69 50-74 (228)
104 1wrb_A DJVLGB; RNA helicase, D 83.4 0.5 1.7E-05 38.5 2.1 25 43-69 53-77 (253)
105 2rep_A Kinesin-like protein KI 83.3 0.27 9.1E-06 43.2 0.4 44 102-146 94-137 (376)
106 2h58_A Kinesin-like protein KI 83.0 0.26 8.8E-06 42.5 0.2 45 101-146 58-102 (330)
107 3hu3_A Transitional endoplasmi 82.8 0.5 1.7E-05 43.0 2.0 49 21-69 202-255 (489)
108 3fmo_B ATP-dependent RNA helic 82.7 0.55 1.9E-05 39.7 2.2 27 42-68 121-147 (300)
109 1f9v_A Kinesin-like protein KA 82.6 0.28 9.4E-06 42.6 0.3 42 103-145 64-105 (347)
110 3n70_A Transport activator; si 82.5 0.29 9.8E-06 36.5 0.3 20 50-69 22-41 (145)
111 2qby_A CDC6 homolog 1, cell di 82.5 0.34 1.2E-05 41.8 0.8 21 50-70 43-63 (386)
112 2zan_A Vacuolar protein sortin 82.5 0.32 1.1E-05 43.6 0.7 50 20-69 131-184 (444)
113 3ber_A Probable ATP-dependent 82.3 0.57 2E-05 38.3 2.1 25 43-69 73-97 (249)
114 4b4t_J 26S protease regulatory 82.2 0.57 2E-05 41.4 2.1 49 21-69 146-199 (405)
115 4b4t_K 26S protease regulatory 81.9 0.3 1E-05 43.6 0.2 49 21-69 170-223 (428)
116 3eiq_A Eukaryotic initiation f 81.8 0.67 2.3E-05 40.4 2.5 26 42-69 69-94 (414)
117 2oxc_A Probable ATP-dependent 81.7 0.63 2.2E-05 37.3 2.1 24 43-68 54-77 (230)
118 2qby_B CDC6 homolog 3, cell di 81.4 0.39 1.3E-05 41.6 0.8 37 32-69 25-62 (384)
119 3fmp_B ATP-dependent RNA helic 81.3 0.72 2.5E-05 41.5 2.5 27 42-68 121-147 (479)
120 3b6e_A Interferon-induced heli 81.2 0.4 1.4E-05 37.7 0.7 24 44-69 42-65 (216)
121 4etp_A Kinesin-like protein KA 81.2 0.31 1.1E-05 43.2 0.1 45 100-145 117-161 (403)
122 3t0q_A AGR253WP; kinesin, alph 81.0 0.34 1.2E-05 42.1 0.2 43 102-145 64-106 (349)
123 1gvn_B Zeta; postsegregational 80.8 1.5 5E-05 36.8 4.1 31 39-69 15-50 (287)
124 4b4t_L 26S protease subunit RP 80.8 0.76 2.6E-05 41.1 2.4 50 20-69 178-232 (437)
125 3u06_A Protein claret segregat 80.7 0.31 1.1E-05 43.3 -0.1 44 101-145 116-159 (412)
126 1q0u_A Bstdead; DEAD protein, 80.6 0.45 1.5E-05 37.8 0.8 24 43-68 34-57 (219)
127 3fe2_A Probable ATP-dependent 80.5 0.59 2E-05 37.9 1.5 25 43-69 59-83 (242)
128 1w5s_A Origin recognition comp 80.4 0.91 3.1E-05 39.6 2.8 26 45-70 40-70 (412)
129 1iqp_A RFCS; clamp loader, ext 80.4 0.53 1.8E-05 39.7 1.2 35 31-69 29-63 (327)
130 3llm_A ATP-dependent RNA helic 80.3 0.63 2.2E-05 37.6 1.6 25 43-69 69-93 (235)
131 1njg_A DNA polymerase III subu 80.0 0.54 1.9E-05 37.3 1.1 18 53-70 46-63 (250)
132 4b3f_X DNA-binding protein smu 79.9 0.48 1.6E-05 44.7 0.9 28 43-71 197-224 (646)
133 2fz4_A DNA repair protein RAD2 79.7 0.61 2.1E-05 37.9 1.4 25 44-70 102-126 (237)
134 1ry6_A Internal kinesin; kines 79.1 0.42 1.4E-05 41.7 0.2 47 100-146 59-106 (360)
135 2ewv_A Twitching motility prot 78.9 0.39 1.3E-05 42.1 -0.1 28 43-70 127-154 (372)
136 4b4t_I 26S protease regulatory 78.9 0.96 3.3E-05 40.3 2.4 49 21-69 180-233 (437)
137 3oiy_A Reverse gyrase helicase 78.9 0.89 3E-05 39.9 2.3 24 43-68 29-52 (414)
138 2p5t_B PEZT; postsegregational 78.6 1.3 4.3E-05 36.3 3.0 38 32-69 11-49 (253)
139 3pfi_A Holliday junction ATP-d 78.5 0.93 3.2E-05 38.6 2.2 45 21-70 27-73 (338)
140 4fcw_A Chaperone protein CLPB; 78.3 0.82 2.8E-05 38.3 1.8 18 52-69 47-64 (311)
141 2oap_1 GSPE-2, type II secreti 78.2 0.66 2.3E-05 42.4 1.2 20 49-70 259-278 (511)
142 2j0s_A ATP-dependent RNA helic 78.1 0.92 3.2E-05 39.6 2.1 26 42-69 66-91 (410)
143 3h1t_A Type I site-specific re 78.0 0.74 2.5E-05 42.7 1.5 27 43-70 190-216 (590)
144 3fht_A ATP-dependent RNA helic 77.9 0.9 3.1E-05 39.5 2.0 27 42-68 54-80 (412)
145 1ofh_A ATP-dependent HSL prote 77.8 0.88 3E-05 38.0 1.8 18 52-69 50-67 (310)
146 3pvs_A Replication-associated 77.1 0.76 2.6E-05 41.3 1.3 38 31-69 30-67 (447)
147 1qvr_A CLPB protein; coiled co 76.8 0.58 2E-05 45.6 0.5 43 21-71 168-210 (854)
148 2chq_A Replication factor C sm 76.7 0.87 3E-05 38.1 1.5 21 49-69 35-55 (319)
149 3pey_A ATP-dependent RNA helic 76.6 1 3.6E-05 38.8 2.0 28 42-69 34-61 (395)
150 1n0w_A DNA repair protein RAD5 76.4 0.72 2.5E-05 37.0 0.9 28 42-69 11-41 (243)
151 1ojl_A Transcriptional regulat 76.3 0.99 3.4E-05 38.2 1.7 26 43-69 17-42 (304)
152 3pxg_A Negative regulator of g 76.3 1.4 4.7E-05 39.7 2.8 29 43-71 192-220 (468)
153 3c8u_A Fructokinase; YP_612366 75.6 1.3 4.4E-05 35.0 2.1 29 41-69 9-39 (208)
154 4b4t_H 26S protease regulatory 75.6 0.84 2.9E-05 41.1 1.1 49 21-69 207-260 (467)
155 1s2m_A Putative ATP-dependent 75.6 1 3.6E-05 39.1 1.7 25 43-69 51-75 (400)
156 2z0m_A 337AA long hypothetical 75.4 1.2 4.2E-05 37.4 2.1 25 43-69 24-48 (337)
157 1hqc_A RUVB; extended AAA-ATPa 75.0 1.6 5.4E-05 36.7 2.7 20 50-69 36-55 (324)
158 4gp7_A Metallophosphoesterase; 74.6 0.54 1.9E-05 36.0 -0.4 18 53-70 10-27 (171)
159 3upu_A ATP-dependent DNA helic 74.1 1.2 4E-05 40.1 1.7 37 29-70 27-63 (459)
160 2r44_A Uncharacterized protein 73.9 0.89 3.1E-05 38.7 0.8 18 53-70 47-64 (331)
161 2v1x_A ATP-dependent DNA helic 73.9 1.6 5.3E-05 40.7 2.5 24 43-68 52-75 (591)
162 2db3_A ATP-dependent RNA helic 73.5 1.4 4.9E-05 39.1 2.1 24 43-68 86-109 (434)
163 1sxj_E Activator 1 40 kDa subu 73.4 0.84 2.9E-05 39.1 0.6 20 50-69 34-53 (354)
164 2i4i_A ATP-dependent RNA helic 73.2 1.5 5E-05 38.3 2.1 25 43-69 45-69 (417)
165 2w0m_A SSO2452; RECA, SSPF, un 73.1 1 3.4E-05 35.7 0.9 28 42-69 10-40 (235)
166 3cf2_A TER ATPase, transitiona 72.6 2.7 9.2E-05 40.6 3.9 49 21-69 202-255 (806)
167 3i5x_A ATP-dependent RNA helic 72.5 1.8 6.1E-05 39.7 2.6 27 42-68 101-127 (563)
168 1in4_A RUVB, holliday junction 72.0 1.2 4E-05 38.2 1.1 17 53-69 52-68 (334)
169 3u61_B DNA polymerase accessor 71.9 1.9 6.4E-05 36.4 2.4 19 52-70 48-66 (324)
170 1xti_A Probable ATP-dependent 71.5 1.8 6.3E-05 37.2 2.3 26 42-69 37-62 (391)
171 1w36_D RECD, exodeoxyribonucle 71.5 1 3.5E-05 42.1 0.7 19 52-70 164-182 (608)
172 4a74_A DNA repair and recombin 71.1 1.2 4.3E-05 35.2 1.0 28 42-69 12-42 (231)
173 2gk6_A Regulator of nonsense t 71.0 1.1 3.7E-05 42.1 0.7 18 53-70 196-213 (624)
174 3e70_C DPA, signal recognition 70.9 2.2 7.4E-05 36.6 2.6 18 52-69 129-146 (328)
175 3b85_A Phosphate starvation-in 70.8 1.1 3.8E-05 35.6 0.7 26 42-69 14-39 (208)
176 2dhr_A FTSH; AAA+ protein, hex 70.8 1 3.5E-05 41.1 0.5 16 54-69 66-81 (499)
177 1jr3_A DNA polymerase III subu 70.2 2.3 8E-05 36.4 2.7 36 31-70 20-56 (373)
178 1sxj_B Activator 1 37 kDa subu 70.2 1.7 5.8E-05 36.4 1.7 21 49-69 39-59 (323)
179 2qag_C Septin-7; cell cycle, c 70.0 0.94 3.2E-05 40.3 0.1 23 47-69 26-48 (418)
180 2cvh_A DNA repair and recombin 70.0 2.1 7.3E-05 33.5 2.2 28 42-69 7-37 (220)
181 3a00_A Guanylate kinase, GMP k 69.7 0.78 2.7E-05 35.5 -0.5 16 54-69 3-18 (186)
182 3lw7_A Adenylate kinase relate 69.6 1.2 4E-05 33.5 0.5 16 54-69 3-18 (179)
183 4a2p_A RIG-I, retinoic acid in 69.2 2 6.8E-05 39.0 2.1 25 43-69 15-39 (556)
184 2ce7_A Cell division protein F 69.2 1.8 6.2E-05 39.2 1.7 17 53-69 50-66 (476)
185 1um8_A ATP-dependent CLP prote 69.1 1.7 5.8E-05 37.7 1.5 18 52-69 72-89 (376)
186 3pxi_A Negative regulator of g 69.0 2.9 9.8E-05 40.1 3.2 29 43-71 192-220 (758)
187 3tau_A Guanylate kinase, GMP k 68.9 0.87 3E-05 36.0 -0.4 17 53-69 9-25 (208)
188 1kgd_A CASK, peripheral plasma 68.9 0.88 3E-05 35.0 -0.3 16 54-69 7-22 (180)
189 1fuu_A Yeast initiation factor 68.7 1.4 4.7E-05 38.0 0.9 24 43-68 51-74 (394)
190 3fho_A ATP-dependent RNA helic 68.6 1.9 6.5E-05 39.2 1.8 26 43-68 149-174 (508)
191 3lfu_A DNA helicase II; SF1 he 68.1 0.97 3.3E-05 42.3 -0.3 20 51-70 21-40 (647)
192 3tr0_A Guanylate kinase, GMP k 67.9 0.95 3.2E-05 35.3 -0.4 16 54-69 9-24 (205)
193 3b9q_A Chloroplast SRP recepto 67.9 2.9 9.9E-05 35.3 2.7 17 53-69 101-117 (302)
194 3hws_A ATP-dependent CLP prote 67.8 1.2 4.2E-05 38.4 0.3 19 51-69 50-68 (363)
195 4gl2_A Interferon-induced heli 67.8 2.2 7.6E-05 40.2 2.2 25 43-69 15-39 (699)
196 1rif_A DAR protein, DNA helica 67.6 1.7 6E-05 35.9 1.2 25 44-70 122-146 (282)
197 1lvg_A Guanylate kinase, GMP k 67.4 0.91 3.1E-05 35.6 -0.5 16 54-69 6-21 (198)
198 2qnr_A Septin-2, protein NEDD5 67.3 0.93 3.2E-05 38.3 -0.5 23 47-69 13-35 (301)
199 1lkx_A Myosin IE heavy chain; 67.2 3.3 0.00011 39.3 3.1 21 49-69 91-111 (697)
200 3pxi_A Negative regulator of g 67.1 2.9 9.9E-05 40.1 2.8 38 31-69 495-538 (758)
201 1ly1_A Polynucleotide kinase; 66.6 1.5 5.1E-05 33.2 0.6 17 53-69 3-19 (181)
202 2ykg_A Probable ATP-dependent 66.4 2.4 8.3E-05 39.9 2.1 24 43-68 21-44 (696)
203 1qhx_A CPT, protein (chloramph 66.4 1.8 6E-05 32.9 1.0 17 53-69 4-20 (178)
204 3sqw_A ATP-dependent RNA helic 66.3 2.9 9.8E-05 38.6 2.6 27 42-68 50-76 (579)
205 1r6b_X CLPA protein; AAA+, N-t 66.1 3 0.0001 39.9 2.7 29 43-71 198-226 (758)
206 2xzl_A ATP-dependent helicase 66.1 1.7 5.7E-05 42.1 0.9 26 43-70 368-393 (802)
207 4ag6_A VIRB4 ATPase, type IV s 66.0 1 3.5E-05 39.4 -0.6 19 51-69 34-52 (392)
208 4h1g_A Maltose binding protein 66.0 1.5 5.1E-05 41.9 0.5 49 96-145 435-483 (715)
209 3tbk_A RIG-I helicase domain; 65.8 2.6 8.8E-05 38.1 2.1 25 43-69 12-36 (555)
210 1w9i_A Myosin II heavy chain; 65.6 3.7 0.00013 39.4 3.1 21 49-69 169-189 (770)
211 4anj_A Unconventional myosin-V 65.5 2.6 9E-05 41.9 2.2 21 49-69 141-161 (1052)
212 2ycu_A Non muscle myosin 2C, a 65.4 2.6 8.8E-05 41.8 2.1 21 49-69 143-163 (995)
213 3iij_A Coilin-interacting nucl 65.3 1.5 5.2E-05 33.5 0.4 17 53-69 12-28 (180)
214 3nbx_X ATPase RAVA; AAA+ ATPas 65.2 2.7 9.3E-05 38.2 2.1 17 53-69 42-58 (500)
215 2fwr_A DNA repair protein RAD2 65.1 2.6 8.9E-05 37.6 2.0 25 43-69 101-125 (472)
216 2jlq_A Serine protease subunit 65.0 2.1 7.3E-05 38.2 1.3 24 44-68 12-35 (451)
217 3e1s_A Exodeoxyribonuclease V, 64.9 1.5 5.2E-05 40.7 0.3 27 43-71 197-223 (574)
218 1rj9_A FTSY, signal recognitio 64.7 1.4 4.6E-05 37.4 -0.0 17 53-69 103-119 (304)
219 1ye8_A Protein THEP1, hypothet 64.5 1.1 3.8E-05 34.6 -0.5 15 55-69 3-17 (178)
220 2v26_A Myosin VI; calmodulin-b 64.4 4 0.00014 39.3 3.1 20 49-68 137-156 (784)
221 1qvr_A CLPB protein; coiled co 64.4 3.9 0.00013 39.8 3.2 17 53-69 589-605 (854)
222 4db1_A Myosin-7; S1DC, cardiac 64.4 4 0.00014 39.3 3.1 21 49-69 168-188 (783)
223 3trf_A Shikimate kinase, SK; a 64.3 2.1 7E-05 32.8 1.0 16 54-69 7-22 (185)
224 1rz3_A Hypothetical protein rb 64.2 4.4 0.00015 31.6 2.9 20 50-69 20-39 (201)
225 3sop_A Neuronal-specific septi 64.0 1.2 4.2E-05 36.9 -0.4 19 51-69 1-19 (270)
226 1sxj_A Activator 1 95 kDa subu 64.0 2.4 8.3E-05 38.6 1.5 18 52-69 77-94 (516)
227 2dfs_A Myosin-5A; myosin-V, in 63.6 3 0.0001 41.8 2.2 21 49-69 153-173 (1080)
228 1hv8_A Putative ATP-dependent 63.6 2.8 9.6E-05 35.5 1.8 25 44-69 37-61 (367)
229 2og2_A Putative signal recogni 63.4 4.4 0.00015 35.1 3.0 17 53-69 158-174 (359)
230 2yhs_A FTSY, cell division pro 63.4 3.2 0.00011 37.8 2.1 17 53-69 294-310 (503)
231 2px0_A Flagellar biosynthesis 63.3 2.4 8.2E-05 35.7 1.3 18 53-70 106-123 (296)
232 2wjy_A Regulator of nonsense t 63.2 1.9 6.6E-05 41.7 0.7 19 53-71 372-390 (800)
233 1e9r_A Conjugal transfer prote 63.0 1.1 3.6E-05 39.9 -1.1 19 51-69 52-70 (437)
234 3kl4_A SRP54, signal recogniti 63.0 5.2 0.00018 35.7 3.4 19 52-70 97-115 (433)
235 1znw_A Guanylate kinase, GMP k 62.9 1.4 4.7E-05 34.8 -0.3 16 54-69 22-37 (207)
236 2b8t_A Thymidine kinase; deoxy 62.8 1.3 4.3E-05 35.8 -0.6 20 52-71 12-31 (223)
237 1uaa_A REP helicase, protein ( 62.8 1.5 5.1E-05 41.4 -0.1 21 51-71 14-34 (673)
238 1ypw_A Transitional endoplasmi 62.7 3.3 0.00011 40.1 2.3 50 20-69 201-255 (806)
239 1gm5_A RECG; helicase, replica 62.6 3.4 0.00012 39.8 2.3 39 27-69 368-406 (780)
240 1w7j_A Myosin VA; motor protei 62.6 4.5 0.00015 39.0 3.1 21 49-69 153-173 (795)
241 3lnc_A Guanylate kinase, GMP k 62.6 1.7 5.9E-05 34.7 0.2 16 54-69 29-44 (231)
242 2bdt_A BH3686; alpha-beta prot 62.5 1.4 4.8E-05 34.0 -0.3 16 54-69 4-19 (189)
243 1kk8_A Myosin heavy chain, str 62.5 4.1 0.00014 39.5 2.8 21 49-69 166-186 (837)
244 2r8r_A Sensor protein; KDPD, P 62.4 1.3 4.5E-05 35.9 -0.5 20 52-71 6-25 (228)
245 2dr3_A UPF0273 protein PH0284; 62.3 3 0.0001 33.3 1.7 28 42-69 10-40 (247)
246 2orw_A Thymidine kinase; TMTK, 62.3 1 3.5E-05 35.1 -1.2 18 54-71 5-22 (184)
247 1r6b_X CLPA protein; AAA+, N-t 62.0 4.3 0.00015 38.8 2.9 17 53-69 489-505 (758)
248 1i84_S Smooth muscle myosin he 61.8 5 0.00017 40.6 3.5 21 49-69 166-186 (1184)
249 1oyw_A RECQ helicase, ATP-depe 61.2 2.4 8.1E-05 38.8 0.9 25 43-69 33-57 (523)
250 1g8x_A Myosin II heavy chain f 61.1 4.5 0.00015 40.2 2.9 21 49-69 169-189 (1010)
251 2ze6_A Isopentenyl transferase 61.1 2.3 7.9E-05 34.8 0.8 15 54-68 3-17 (253)
252 1z6g_A Guanylate kinase; struc 60.9 1.4 4.8E-05 35.2 -0.6 16 54-69 25-40 (218)
253 4a4z_A Antiviral helicase SKI2 60.4 3.6 0.00012 40.8 2.1 23 43-67 47-69 (997)
254 1gku_B Reverse gyrase, TOP-RG; 60.1 3.9 0.00013 40.8 2.4 24 42-67 63-86 (1054)
255 2gza_A Type IV secretion syste 60.0 1.4 4.8E-05 38.3 -0.8 20 49-70 174-193 (361)
256 3vaa_A Shikimate kinase, SK; s 60.0 2.7 9.2E-05 32.7 0.9 16 54-69 27-42 (199)
257 2ehv_A Hypothetical protein PH 59.9 1.7 5.6E-05 35.0 -0.3 27 44-70 19-48 (251)
258 2qor_A Guanylate kinase; phosp 59.6 2.5 8.6E-05 33.0 0.7 16 54-69 14-29 (204)
259 3dm5_A SRP54, signal recogniti 59.5 6.8 0.00023 35.0 3.6 20 52-71 100-119 (443)
260 3kb2_A SPBC2 prophage-derived 58.9 3 0.0001 31.2 1.0 16 54-69 3-18 (173)
261 2pt7_A CAG-ALFA; ATPase, prote 58.9 1.5 5E-05 37.6 -0.8 16 54-69 173-188 (330)
262 1c4o_A DNA nucleotide excision 58.7 5.5 0.00019 37.5 3.0 40 27-71 8-47 (664)
263 1zp6_A Hypothetical protein AT 58.6 2.7 9.2E-05 32.2 0.7 17 53-69 10-26 (191)
264 1j8m_F SRP54, signal recogniti 58.5 7.6 0.00026 32.6 3.6 17 54-70 100-116 (297)
265 1xx6_A Thymidine kinase; NESG, 58.2 1.4 4.9E-05 34.5 -0.9 18 54-71 10-27 (191)
266 1kag_A SKI, shikimate kinase I 58.1 2.8 9.6E-05 31.5 0.7 16 54-69 6-21 (173)
267 3twe_A Alpha4H; unknown functi 57.3 5.1 0.00017 19.6 1.3 20 260-279 7-26 (27)
268 2qmh_A HPR kinase/phosphorylas 57.2 3.6 0.00012 32.6 1.2 21 49-69 31-51 (205)
269 2ga8_A Hypothetical 39.9 kDa p 57.1 9.3 0.00032 33.1 3.9 21 49-69 21-41 (359)
270 1v5w_A DMC1, meiotic recombina 57.1 5.5 0.00019 34.1 2.5 29 42-70 109-140 (343)
271 1kht_A Adenylate kinase; phosp 56.9 3 0.0001 31.8 0.7 17 53-69 4-20 (192)
272 2j41_A Guanylate kinase; GMP, 56.8 3.3 0.00011 32.1 1.0 16 54-69 8-23 (207)
273 1y63_A LMAJ004144AAA protein; 56.7 2.6 9E-05 32.3 0.4 16 54-69 12-27 (184)
274 2rhm_A Putative kinase; P-loop 56.7 2.4 8.3E-05 32.5 0.1 17 53-69 6-22 (193)
275 4a2q_A RIG-I, retinoic acid in 56.6 4.6 0.00016 38.9 2.1 26 42-69 255-280 (797)
276 1wp9_A ATP-dependent RNA helic 56.6 4.6 0.00016 35.4 2.0 26 42-70 16-41 (494)
277 2i3b_A HCR-ntpase, human cance 56.3 1.9 6.4E-05 33.7 -0.6 16 54-69 3-18 (189)
278 1odf_A YGR205W, hypothetical 3 56.2 7 0.00024 32.7 3.0 37 33-69 10-48 (290)
279 1s96_A Guanylate kinase, GMP k 55.6 2.1 7.3E-05 34.3 -0.4 16 54-69 18-33 (219)
280 3uie_A Adenylyl-sulfate kinase 55.3 4.8 0.00016 31.3 1.7 20 50-69 23-42 (200)
281 1ex7_A Guanylate kinase; subst 55.2 3.4 0.00012 32.2 0.8 15 55-69 4-18 (186)
282 2r2a_A Uncharacterized protein 54.9 2.9 0.0001 32.9 0.4 17 54-70 7-23 (199)
283 1c9k_A COBU, adenosylcobinamid 54.8 3.2 0.00011 32.3 0.5 13 55-67 2-14 (180)
284 2v6i_A RNA helicase; membrane, 54.5 3.9 0.00013 36.3 1.2 16 54-69 4-19 (431)
285 1knq_A Gluconate kinase; ALFA/ 54.5 3.8 0.00013 30.9 1.0 17 53-69 9-25 (175)
286 3a8t_A Adenylate isopentenyltr 54.5 3.8 0.00013 35.3 1.0 16 53-68 41-56 (339)
287 2zj8_A DNA helicase, putative 54.3 3.5 0.00012 39.2 0.9 20 48-69 37-56 (720)
288 1pzn_A RAD51, DNA repair and r 54.2 5.8 0.0002 34.1 2.2 28 42-69 118-148 (349)
289 2oca_A DAR protein, ATP-depend 54.1 4.1 0.00014 36.7 1.3 25 44-70 122-146 (510)
290 2qen_A Walker-type ATPase; unk 53.8 6.1 0.00021 33.2 2.2 17 53-69 32-48 (350)
291 2zts_A Putative uncharacterize 53.7 3.8 0.00013 32.7 0.9 27 42-68 17-46 (251)
292 1moz_A ARL1, ADP-ribosylation 53.6 6.3 0.00022 29.5 2.1 28 42-69 7-35 (183)
293 3l9o_A ATP-dependent RNA helic 53.5 5 0.00017 40.3 1.8 24 43-68 192-215 (1108)
294 3t5d_A Septin-7; GTP-binding p 53.5 3.8 0.00013 33.8 0.8 22 48-69 4-25 (274)
295 2p6r_A Afuhel308 helicase; pro 53.3 3.8 0.00013 38.8 0.9 31 29-69 27-57 (702)
296 2i1q_A DNA repair and recombin 53.3 6.4 0.00022 33.2 2.3 29 41-69 84-115 (322)
297 1f2t_A RAD50 ABC-ATPase; DNA d 53.3 4.7 0.00016 29.9 1.3 16 54-69 25-40 (149)
298 3foz_A TRNA delta(2)-isopenten 53.2 3.7 0.00013 34.9 0.7 17 53-69 11-27 (316)
299 3rc3_A ATP-dependent RNA helic 53.1 3.2 0.00011 39.3 0.4 20 47-68 152-171 (677)
300 2fna_A Conserved hypothetical 53.0 3.3 0.00011 35.0 0.4 18 53-70 31-48 (357)
301 1vma_A Cell division protein F 53.0 2.5 8.7E-05 35.8 -0.3 17 53-69 105-121 (306)
302 2z43_A DNA repair and recombin 52.8 5.9 0.0002 33.6 2.0 28 42-69 94-124 (324)
303 4ddu_A Reverse gyrase; topoiso 52.7 6 0.00021 39.7 2.3 24 42-67 85-108 (1104)
304 3cm0_A Adenylate kinase; ATP-b 52.6 4.2 0.00014 30.9 0.9 16 54-69 6-21 (186)
305 1pjr_A PCRA; DNA repair, DNA r 52.5 2.4 8.1E-05 40.5 -0.7 20 52-71 24-43 (724)
306 3kta_A Chromosome segregation 52.2 4 0.00014 31.0 0.7 16 54-69 28-43 (182)
307 3crm_A TRNA delta(2)-isopenten 52.2 5.1 0.00017 34.2 1.4 16 53-68 6-21 (323)
308 1htw_A HI0065; nucleotide-bind 52.1 2.7 9.1E-05 31.8 -0.3 17 53-69 34-50 (158)
309 4a2w_A RIG-I, retinoic acid in 51.9 6 0.00021 38.9 2.1 26 42-69 255-280 (936)
310 1tev_A UMP-CMP kinase; ploop, 51.8 4.1 0.00014 31.1 0.8 17 53-69 4-20 (196)
311 3exa_A TRNA delta(2)-isopenten 51.7 4 0.00014 34.8 0.7 16 54-69 5-20 (322)
312 3sr0_A Adenylate kinase; phosp 51.7 4.2 0.00014 32.2 0.8 13 55-67 3-15 (206)
313 1yks_A Genome polyprotein [con 51.6 4.7 0.00016 35.9 1.2 20 48-69 6-25 (440)
314 1e6c_A Shikimate kinase; phosp 51.6 4.2 0.00014 30.5 0.8 16 54-69 4-19 (173)
315 3t61_A Gluconokinase; PSI-biol 51.5 4.2 0.00014 31.6 0.8 18 52-69 18-35 (202)
316 3tif_A Uncharacterized ABC tra 51.2 2.8 9.7E-05 33.9 -0.3 16 54-69 33-48 (235)
317 2xgj_A ATP-dependent RNA helic 51.1 5.1 0.00017 39.8 1.4 23 44-68 95-117 (1010)
318 1nks_A Adenylate kinase; therm 50.9 3.9 0.00013 31.1 0.5 16 54-69 3-18 (194)
319 2z83_A Helicase/nucleoside tri 50.8 5.3 0.00018 35.7 1.4 15 54-68 23-37 (459)
320 2bwj_A Adenylate kinase 5; pho 50.6 3.4 0.00012 31.7 0.1 16 54-69 14-29 (199)
321 2v3c_C SRP54, signal recogniti 50.6 9.9 0.00034 33.8 3.1 18 53-70 100-117 (432)
322 3m6a_A ATP-dependent protease 50.3 3.1 0.00011 38.3 -0.3 19 51-69 107-125 (543)
323 2iyv_A Shikimate kinase, SK; t 50.3 4.5 0.00016 30.7 0.8 15 54-68 4-18 (184)
324 2vli_A Antibiotic resistance p 50.2 4.8 0.00016 30.5 0.9 17 53-69 6-22 (183)
325 3a4m_A L-seryl-tRNA(SEC) kinas 50.2 4.1 0.00014 33.3 0.6 17 53-69 5-21 (260)
326 1svm_A Large T antigen; AAA+ f 50.1 9.7 0.00033 33.2 3.0 17 53-69 170-186 (377)
327 1xjc_A MOBB protein homolog; s 49.9 3 0.0001 32.0 -0.3 17 54-70 6-22 (169)
328 3umf_A Adenylate kinase; rossm 49.9 4.5 0.00015 32.3 0.7 14 54-67 31-44 (217)
329 1via_A Shikimate kinase; struc 49.8 4.6 0.00016 30.5 0.7 16 54-69 6-21 (175)
330 1aky_A Adenylate kinase; ATP:A 49.6 4 0.00014 32.2 0.4 15 54-68 6-20 (220)
331 3fb4_A Adenylate kinase; psych 49.4 4.7 0.00016 31.6 0.8 15 55-69 3-17 (216)
332 4eun_A Thermoresistant glucoki 49.4 5.1 0.00017 31.1 0.9 17 53-69 30-46 (200)
333 2eyq_A TRCF, transcription-rep 49.4 9.8 0.00033 38.4 3.2 25 44-68 616-640 (1151)
334 3ney_A 55 kDa erythrocyte memb 49.2 5.2 0.00018 31.5 1.0 16 54-69 21-36 (197)
335 2iut_A DNA translocase FTSK; n 48.9 3 0.0001 38.6 -0.5 19 52-70 214-232 (574)
336 1a5t_A Delta prime, HOLB; zinc 48.4 9 0.00031 32.5 2.4 34 32-69 7-41 (334)
337 2vhj_A Ntpase P4, P4; non- hyd 48.4 5.3 0.00018 34.2 1.0 18 53-70 124-141 (331)
338 2pt5_A Shikimate kinase, SK; a 48.2 5.1 0.00017 29.9 0.7 16 54-69 2-17 (168)
339 1ak2_A Adenylate kinase isoenz 48.2 4.3 0.00015 32.4 0.4 17 53-69 17-33 (233)
340 1uf9_A TT1252 protein; P-loop, 47.8 6.2 0.00021 30.4 1.2 20 50-69 6-25 (203)
341 2gno_A DNA polymerase III, gam 47.7 7.5 0.00026 32.7 1.8 26 44-69 10-35 (305)
342 2va8_A SSO2462, SKI2-type heli 47.7 6.6 0.00023 37.1 1.6 18 52-69 46-63 (715)
343 1sq5_A Pantothenate kinase; P- 47.6 7.8 0.00027 32.5 1.9 20 50-69 78-97 (308)
344 1g41_A Heat shock protein HSLU 47.3 4.5 0.00015 36.2 0.4 17 53-69 51-67 (444)
345 2qag_A Septin-2, protein NEDD5 47.3 5.5 0.00019 34.4 0.9 23 47-69 32-54 (361)
346 1ukz_A Uridylate kinase; trans 47.3 5.4 0.00018 30.9 0.8 17 53-69 16-32 (203)
347 3dl0_A Adenylate kinase; phosp 47.1 5.4 0.00018 31.2 0.8 15 55-69 3-17 (216)
348 1zd8_A GTP:AMP phosphotransfer 46.8 5 0.00017 31.8 0.5 16 54-69 9-24 (227)
349 2zr9_A Protein RECA, recombina 46.6 8.5 0.00029 33.1 2.0 29 41-69 46-78 (349)
350 2bbw_A Adenylate kinase 4, AK4 46.3 6 0.00021 31.8 1.0 17 53-69 28-44 (246)
351 2ius_A DNA translocase FTSK; n 45.9 3.6 0.00012 37.6 -0.5 17 53-69 168-184 (512)
352 2d7d_A Uvrabc system protein B 45.8 12 0.00043 35.1 3.2 47 20-71 5-51 (661)
353 1qf9_A UMP/CMP kinase, protein 45.7 5.4 0.00018 30.3 0.6 16 54-69 8-23 (194)
354 2dyk_A GTP-binding protein; GT 45.6 5.9 0.0002 28.9 0.8 16 54-69 3-18 (161)
355 2xau_A PRE-mRNA-splicing facto 45.3 7.1 0.00024 37.5 1.4 22 46-68 104-125 (773)
356 1zu4_A FTSY; GTPase, signal re 45.2 4 0.00014 34.7 -0.3 17 54-70 107-123 (320)
357 1np6_A Molybdopterin-guanine d 45.2 3.9 0.00013 31.4 -0.4 17 54-70 8-24 (174)
358 2cdn_A Adenylate kinase; phosp 45.2 6.5 0.00022 30.4 1.0 21 49-69 17-37 (201)
359 3d3q_A TRNA delta(2)-isopenten 44.9 6.5 0.00022 33.8 1.0 15 54-68 9-23 (340)
360 2ce2_X GTPase HRAS; signaling 44.9 5.7 0.00019 28.9 0.6 16 54-69 5-20 (166)
361 2c95_A Adenylate kinase 1; tra 44.8 6.1 0.00021 30.2 0.7 17 53-69 10-26 (196)
362 2plr_A DTMP kinase, probable t 44.7 6.2 0.00021 30.5 0.8 17 53-69 5-21 (213)
363 3aez_A Pantothenate kinase; tr 44.6 4.1 0.00014 34.5 -0.4 18 52-69 90-107 (312)
364 1zak_A Adenylate kinase; ATP:A 44.6 5.7 0.0002 31.3 0.6 16 54-69 7-22 (222)
365 3fvq_A Fe(3+) IONS import ATP- 44.5 3.8 0.00013 35.5 -0.5 16 54-69 32-47 (359)
366 1use_A VAsp, vasodilator-stimu 44.4 23 0.0008 20.4 2.9 17 261-277 15-31 (45)
367 2ged_A SR-beta, signal recogni 44.3 6.3 0.00022 29.9 0.8 19 51-69 47-65 (193)
368 2yvu_A Probable adenylyl-sulfa 44.2 7.8 0.00027 29.5 1.3 18 52-69 13-30 (186)
369 2yyz_A Sugar ABC transporter, 44.1 4.3 0.00015 35.2 -0.3 16 54-69 31-46 (359)
370 2onk_A Molybdate/tungstate ABC 44.1 4.2 0.00014 33.0 -0.3 16 54-69 26-41 (240)
371 2pcj_A ABC transporter, lipopr 44.1 3.8 0.00013 32.8 -0.6 16 54-69 32-47 (224)
372 3rlf_A Maltose/maltodextrin im 44.0 4.3 0.00015 35.6 -0.3 16 54-69 31-46 (381)
373 3u4q_A ATP-dependent helicase/ 44.0 3.9 0.00013 41.6 -0.7 20 52-71 23-42 (1232)
374 2jaq_A Deoxyguanosine kinase; 44.0 6.4 0.00022 30.2 0.7 16 54-69 2-17 (205)
375 1z47_A CYSA, putative ABC-tran 43.9 4.3 0.00015 35.1 -0.3 16 54-69 43-58 (355)
376 2pbr_A DTMP kinase, thymidylat 43.8 6.5 0.00022 29.9 0.8 15 55-69 3-17 (195)
377 1z2a_A RAS-related protein RAB 43.8 6.6 0.00023 28.8 0.8 17 53-69 6-22 (168)
378 4etp_B Spindle POLE BODY-assoc 43.7 11 0.00038 31.8 2.1 46 16-61 90-137 (333)
379 2cbz_A Multidrug resistance-as 43.4 4.4 0.00015 32.8 -0.3 16 54-69 33-48 (237)
380 3gfo_A Cobalt import ATP-bindi 43.1 4.5 0.00015 33.6 -0.3 16 54-69 36-51 (275)
381 3vp9_A General transcriptional 43.1 20 0.00069 24.3 3.0 20 260-279 67-86 (92)
382 1zuh_A Shikimate kinase; alpha 43.0 7.5 0.00026 29.0 1.0 16 53-68 8-23 (168)
383 1g29_1 MALK, maltose transport 43.0 4.5 0.00016 35.2 -0.3 16 54-69 31-46 (372)
384 1ji0_A ABC transporter; ATP bi 43.0 4.5 0.00015 32.7 -0.3 16 54-69 34-49 (240)
385 2it1_A 362AA long hypothetical 43.0 4.5 0.00015 35.1 -0.3 16 54-69 31-46 (362)
386 3tlx_A Adenylate kinase 2; str 42.9 6.8 0.00023 31.6 0.8 36 31-68 10-45 (243)
387 1g6h_A High-affinity branched- 42.8 4.6 0.00016 33.1 -0.3 16 54-69 35-50 (257)
388 3asz_A Uridine kinase; cytidin 42.6 7 0.00024 30.4 0.8 16 54-69 8-23 (211)
389 1b0u_A Histidine permease; ABC 42.4 4.6 0.00016 33.2 -0.3 16 54-69 34-49 (262)
390 1sgw_A Putative ABC transporte 42.4 4.3 0.00015 32.4 -0.5 15 55-69 38-52 (214)
391 2z0h_A DTMP kinase, thymidylat 42.3 7.1 0.00024 29.8 0.8 15 55-69 3-17 (197)
392 2yz2_A Putative ABC transporte 42.0 4.8 0.00016 33.2 -0.3 16 54-69 35-50 (266)
393 3o8b_A HCV NS3 protease/helica 41.9 8.5 0.00029 36.3 1.4 17 53-69 233-249 (666)
394 1v43_A Sugar-binding transport 41.9 4.8 0.00016 35.1 -0.3 16 54-69 39-54 (372)
395 2ff7_A Alpha-hemolysin translo 41.9 4.8 0.00017 32.8 -0.3 16 54-69 37-52 (247)
396 1jjv_A Dephospho-COA kinase; P 41.8 7.9 0.00027 30.0 1.0 16 54-69 4-19 (206)
397 1zj6_A ADP-ribosylation factor 41.8 15 0.00051 27.6 2.6 23 47-69 11-33 (187)
398 1cke_A CK, MSSA, protein (cyti 41.7 7.9 0.00027 30.4 1.0 16 54-69 7-22 (227)
399 3auy_A DNA double-strand break 41.7 8 0.00027 33.4 1.1 17 53-69 26-42 (371)
400 2ghi_A Transport protein; mult 41.6 4.9 0.00017 33.0 -0.3 16 54-69 48-63 (260)
401 1w4r_A Thymidine kinase; type 41.6 6.7 0.00023 30.8 0.5 16 51-66 19-34 (195)
402 4g1u_C Hemin import ATP-bindin 41.5 4.9 0.00017 33.2 -0.4 16 54-69 39-54 (266)
403 2if2_A Dephospho-COA kinase; a 41.5 6.8 0.00023 30.3 0.5 16 54-69 3-18 (204)
404 3tqc_A Pantothenate kinase; bi 41.4 10 0.00034 32.3 1.6 16 54-69 94-109 (321)
405 1u8z_A RAS-related protein RAL 41.4 7.6 0.00026 28.3 0.8 17 53-69 5-21 (168)
406 3f9v_A Minichromosome maintena 41.4 8.8 0.0003 35.6 1.4 17 54-70 329-345 (595)
407 1mv5_A LMRA, multidrug resista 41.3 4.9 0.00017 32.6 -0.3 16 54-69 30-45 (243)
408 4a15_A XPD helicase, ATP-depen 41.2 12 0.00041 34.9 2.3 38 26-69 2-39 (620)
409 1ek0_A Protein (GTP-binding pr 41.2 7.7 0.00026 28.4 0.8 16 54-69 5-20 (170)
410 1e4v_A Adenylate kinase; trans 41.2 7 0.00024 30.6 0.6 15 55-69 3-17 (214)
411 2obl_A ESCN; ATPase, hydrolase 41.0 6.9 0.00024 33.7 0.5 28 42-69 60-88 (347)
412 1ky3_A GTP-binding protein YPT 40.9 7.7 0.00026 28.8 0.8 18 52-69 8-25 (182)
413 3qks_A DNA double-strand break 40.9 9.4 0.00032 29.8 1.3 17 53-69 24-40 (203)
414 2olj_A Amino acid ABC transpor 40.9 5.1 0.00017 33.0 -0.3 16 54-69 52-67 (263)
415 2v9p_A Replication protein E1; 40.5 8.6 0.00029 32.5 1.0 17 53-69 127-143 (305)
416 1f6b_A SAR1; gtpases, N-termin 40.5 13 0.00043 28.6 2.0 28 42-69 14-42 (198)
417 1vpl_A ABC transporter, ATP-bi 40.4 5.2 0.00018 32.8 -0.3 16 54-69 43-58 (256)
418 1cr0_A DNA primase/helicase; R 40.4 7.6 0.00026 32.2 0.7 28 42-69 23-52 (296)
419 3k1j_A LON protease, ATP-depen 40.2 13 0.00046 34.4 2.4 21 47-69 57-77 (604)
420 1z0j_A RAB-22, RAS-related pro 40.1 8.1 0.00028 28.3 0.8 17 53-69 7-23 (170)
421 3hr8_A Protein RECA; alpha and 40.1 12 0.0004 32.4 1.9 29 41-69 46-78 (356)
422 2f1r_A Molybdopterin-guanine d 40.0 2.8 9.5E-05 32.2 -1.9 16 54-69 4-19 (171)
423 3qf7_A RAD50; ABC-ATPase, ATPa 40.0 9.6 0.00033 32.9 1.3 16 54-69 25-40 (365)
424 2pez_A Bifunctional 3'-phospho 39.9 8.8 0.0003 29.0 1.0 16 54-69 7-22 (179)
425 2pze_A Cystic fibrosis transme 39.8 5.4 0.00018 32.0 -0.3 16 54-69 36-51 (229)
426 2xb4_A Adenylate kinase; ATP-b 39.8 8.1 0.00028 30.6 0.7 15 55-69 3-17 (223)
427 3lda_A DNA repair protein RAD5 39.7 12 0.00042 32.8 2.0 30 41-70 164-196 (400)
428 2v54_A DTMP kinase, thymidylat 39.7 8.2 0.00028 29.7 0.8 16 54-69 6-21 (204)
429 1g5t_A COB(I)alamin adenosyltr 39.7 3.7 0.00013 32.3 -1.3 21 51-71 27-47 (196)
430 2nq2_C Hypothetical ABC transp 39.7 5.5 0.00019 32.6 -0.3 16 54-69 33-48 (253)
431 1ksh_A ARF-like protein 2; sma 39.4 11 0.00037 28.4 1.4 25 45-69 10-35 (186)
432 1nrj_B SR-beta, signal recogni 39.4 8.4 0.00029 29.9 0.8 20 50-69 10-29 (218)
433 2w00_A HSDR, R.ECOR124I; ATP-b 39.3 6.1 0.00021 39.4 -0.1 17 55-71 303-319 (1038)
434 1kao_A RAP2A; GTP-binding prot 39.3 8.5 0.00029 28.0 0.8 17 53-69 4-20 (167)
435 2ixe_A Antigen peptide transpo 39.2 5.6 0.00019 32.9 -0.3 42 11-69 15-62 (271)
436 2pjz_A Hypothetical protein ST 39.2 5.6 0.00019 32.8 -0.3 16 54-69 32-47 (263)
437 2qi9_C Vitamin B12 import ATP- 39.1 5.6 0.00019 32.5 -0.3 16 54-69 28-43 (249)
438 1g16_A RAS-related protein SEC 39.0 7.9 0.00027 28.4 0.6 16 54-69 5-20 (170)
439 1u94_A RECA protein, recombina 39.0 14 0.00048 31.8 2.2 28 42-69 49-80 (356)
440 2erx_A GTP-binding protein DI- 39.0 8.6 0.0003 28.2 0.8 17 53-69 4-20 (172)
441 3cf2_A TER ATPase, transitiona 39.0 6.5 0.00022 38.0 0.0 17 53-69 512-528 (806)
442 2wwf_A Thymidilate kinase, put 39.0 7.9 0.00027 30.0 0.6 17 53-69 11-27 (212)
443 2qt1_A Nicotinamide riboside k 39.0 7.9 0.00027 30.1 0.6 16 54-69 23-38 (207)
444 1wms_A RAB-9, RAB9, RAS-relate 38.9 8.6 0.0003 28.5 0.8 17 53-69 8-24 (177)
445 2zu0_C Probable ATP-dependent 38.9 5.7 0.00019 32.8 -0.3 16 54-69 48-63 (267)
446 1ltq_A Polynucleotide kinase; 38.9 9.1 0.00031 31.7 1.0 17 53-69 3-19 (301)
447 2b6h_A ADP-ribosylation factor 38.9 6.6 0.00023 30.1 0.1 27 43-69 20-46 (192)
448 3d31_A Sulfate/molybdate ABC t 38.8 4.1 0.00014 35.2 -1.3 16 54-69 28-43 (348)
449 2d2e_A SUFC protein; ABC-ATPas 38.8 5.8 0.0002 32.3 -0.3 16 54-69 31-46 (250)
450 1c1y_A RAS-related protein RAP 38.7 8.9 0.0003 28.0 0.8 17 53-69 4-20 (167)
451 3p32_A Probable GTPase RV1496/ 38.6 15 0.0005 31.5 2.3 30 40-69 65-96 (355)
452 2ihy_A ABC transporter, ATP-bi 38.6 5.8 0.0002 33.0 -0.3 16 54-69 49-64 (279)
453 2fu5_C RAS-related protein RAB 38.3 10 0.00035 28.3 1.1 17 53-69 9-25 (183)
454 1z08_A RAS-related protein RAB 38.3 8.9 0.00031 28.1 0.7 17 53-69 7-23 (170)
455 1m7g_A Adenylylsulfate kinase; 38.2 9.7 0.00033 29.7 1.0 17 53-69 26-42 (211)
456 3eph_A TRNA isopentenyltransfe 38.1 8.3 0.00028 34.0 0.6 15 54-68 4-18 (409)
457 1r2q_A RAS-related protein RAB 37.8 9.3 0.00032 27.9 0.8 17 53-69 7-23 (170)
458 1nlf_A Regulatory protein REPA 37.8 9.1 0.00031 31.4 0.8 26 44-69 20-47 (279)
459 3be4_A Adenylate kinase; malar 37.7 9.8 0.00034 29.9 0.9 17 53-69 6-22 (217)
460 2jeo_A Uridine-cytidine kinase 37.4 6.2 0.00021 31.8 -0.3 16 54-69 27-42 (245)
461 1vht_A Dephospho-COA kinase; s 37.2 10 0.00035 29.7 0.9 17 53-69 5-21 (218)
462 3tw8_B RAS-related protein RAB 37.1 9.6 0.00033 28.3 0.7 17 53-69 10-26 (181)
463 2whx_A Serine protease/ntpase/ 37.0 11 0.00037 35.2 1.2 23 44-68 180-202 (618)
464 1r8s_A ADP-ribosylation factor 36.9 9.9 0.00034 27.7 0.8 15 55-69 3-17 (164)
465 1svi_A GTP-binding protein YSX 36.8 8.8 0.0003 29.1 0.5 18 52-69 23-40 (195)
466 3con_A GTPase NRAS; structural 36.6 10 0.00034 28.7 0.8 17 53-69 22-38 (190)
467 3zvl_A Bifunctional polynucleo 36.5 9 0.00031 33.8 0.6 21 49-69 255-275 (416)
468 2dpy_A FLII, flagellum-specifi 36.5 9.6 0.00033 33.9 0.7 28 42-69 146-174 (438)
469 3pqc_A Probable GTP-binding pr 36.3 9 0.00031 28.9 0.5 17 53-69 24-40 (195)
470 3gd7_A Fusion complex of cysti 36.3 6.2 0.00021 34.6 -0.5 42 10-69 17-64 (390)
471 1upt_A ARL1, ADP-ribosylation 36.3 10 0.00035 27.8 0.8 17 53-69 8-24 (171)
472 1nn5_A Similar to deoxythymidy 36.1 9.3 0.00032 29.6 0.6 17 53-69 10-26 (215)
473 1gtv_A TMK, thymidylate kinase 36.1 5.9 0.0002 30.8 -0.7 16 54-69 2-17 (214)
474 2y8e_A RAB-protein 6, GH09086P 36.0 9.4 0.00032 28.2 0.6 17 53-69 15-31 (179)
475 2lkc_A Translation initiation 35.9 10 0.00035 28.1 0.7 18 52-69 8-25 (178)
476 3q72_A GTP-binding protein RAD 35.8 9.6 0.00033 27.9 0.6 16 54-69 4-19 (166)
477 2yc2_C IFT27, small RAB-relate 35.7 9.7 0.00033 29.1 0.6 19 51-69 19-37 (208)
478 1oxx_K GLCV, glucose, ABC tran 35.6 4.2 0.00014 35.2 -1.7 16 54-69 33-48 (353)
479 1z0f_A RAB14, member RAS oncog 35.6 11 0.00036 27.9 0.8 18 52-69 15-32 (179)
480 3q85_A GTP-binding protein REM 35.5 11 0.00036 27.7 0.8 16 54-69 4-19 (169)
481 3vkw_A Replicase large subunit 35.4 5.9 0.0002 35.4 -0.8 19 53-71 162-180 (446)
482 2fn4_A P23, RAS-related protei 35.3 9.8 0.00034 28.2 0.5 17 53-69 10-26 (181)
483 2f9l_A RAB11B, member RAS onco 35.2 11 0.00037 28.9 0.8 17 53-69 6-22 (199)
484 1nij_A Hypothetical protein YJ 34.9 7.7 0.00026 32.8 -0.2 16 54-69 6-21 (318)
485 3kkq_A RAS-related protein M-R 34.9 11 0.00038 28.1 0.8 18 52-69 18-35 (183)
486 3bh0_A DNAB-like replicative h 34.9 16 0.00056 30.7 1.9 28 42-69 56-85 (315)
487 4dsu_A GTPase KRAS, isoform 2B 34.8 11 0.00038 28.2 0.8 17 53-69 5-21 (189)
488 2a9k_A RAS-related protein RAL 34.7 11 0.00038 28.1 0.8 17 53-69 19-35 (187)
489 2bov_A RAla, RAS-related prote 34.7 11 0.00038 28.7 0.8 17 53-69 15-31 (206)
490 2nzj_A GTP-binding protein REM 34.5 11 0.00038 27.7 0.8 17 53-69 5-21 (175)
491 2efe_B Small GTP-binding prote 34.4 11 0.00038 28.0 0.7 18 52-69 12-29 (181)
492 2bme_A RAB4A, RAS-related prot 34.3 10 0.00036 28.3 0.6 17 53-69 11-27 (186)
493 3io5_A Recombination and repai 34.2 17 0.00058 31.0 1.9 28 42-69 12-45 (333)
494 2grj_A Dephospho-COA kinase; T 34.2 12 0.00043 29.0 1.0 16 53-68 13-28 (192)
495 1xp8_A RECA protein, recombina 34.2 17 0.00059 31.4 2.0 29 41-69 59-91 (366)
496 2xtp_A GTPase IMAP family memb 34.1 6.4 0.00022 31.9 -0.8 19 51-69 21-39 (260)
497 1e69_A Chromosome segregation 34.0 14 0.00048 31.1 1.4 16 54-69 26-41 (322)
498 3he5_B Synzip2; heterodimeric 34.0 42 0.0014 19.0 2.8 20 260-279 30-49 (52)
499 2o5v_A DNA replication and rep 33.7 8.7 0.0003 33.2 -0.0 16 54-69 28-43 (359)
500 1ypw_A Transitional endoplasmi 33.7 7.9 0.00027 37.4 -0.3 18 52-69 511-528 (806)
No 1
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=5.2e-62 Score=429.99 Aligned_cols=238 Identities=35% Similarity=0.527 Sum_probs=197.2
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP 97 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~ 97 (279)
..|.||+||+++++|++||+. +.|+|+.+++|+|+||||||||||||||||+|+..++|++|+++.+| |..+......
T Consensus 47 ~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~l-F~~i~~~~~~ 124 (369)
T 3cob_A 47 KQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSEL-FRIMKKDSNK 124 (369)
T ss_dssp EEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHH-HHHHHHTTTT
T ss_pred eEEecCEEECCCCCcceehhh-hhhhhHhhhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHH-HHHHHhhccC
Confidence 458899999999999999999 57999999999999999999999999999999999999999999999 9877532211
Q ss_pred CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc--e----------EEEecccc------------------
Q psy37 98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK--T----------FTMMGSKA------------------ 147 (279)
Q Consensus 98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~--~----------~~~~g~~~------------------ 147 (279)
..+.+..+++|+|++.++|||.+.... . ..+.|...
T Consensus 125 --------------~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~ 190 (369)
T 3cob_A 125 --------------FSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSE 190 (369)
T ss_dssp --------------EEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHH
T ss_pred --------------ceeEEEEEEEEEeCceeeecCCCcccCCcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhh
Confidence 125566699999999999999754221 1 11111111
Q ss_pred -c---------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy37 148 -R---------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSL 187 (279)
Q Consensus 148 -~---------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l 187 (279)
| ...+|+|++......|.+++|+..||+||++|++||.+|
T Consensus 191 ~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL 270 (369)
T 3cob_A 191 QRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISAL 270 (369)
T ss_dssp HTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 1 111456665555577899999999999999999999999
Q ss_pred HhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHHHHHHHH
Q psy37 188 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELH 267 (279)
Q Consensus 188 ~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~~~~~l~ 267 (279)
++ +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++|+|.|.+|.++ ..+.+|+
T Consensus 271 ~~----~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~--~ei~~L~ 344 (369)
T 3cob_A 271 SS----GNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--KEVARLK 344 (369)
T ss_dssp HT----TCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC--HHHHHHH
T ss_pred hc----CCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccCCcccCCH--HHHHHHH
Confidence 95 67899999999999999999999999999999999999999999999999999999999999877 6667788
Q ss_pred HHHHHHHHHh
Q psy37 268 DEITKLKAML 277 (279)
Q Consensus 268 ~~~~~Lk~~l 277 (279)
+++..||.++
T Consensus 345 ~~l~~~~~~~ 354 (369)
T 3cob_A 345 KLVSYWKEQA 354 (369)
T ss_dssp HHTTCC----
T ss_pred HHHHHHHHhc
Confidence 8877777654
No 2
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.6e-61 Score=426.77 Aligned_cols=246 Identities=36% Similarity=0.458 Sum_probs=182.3
Q ss_pred eeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC---CCCCCCCcccccee
Q psy37 12 DFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA---TTDNSPDAHKDFTF 88 (279)
Q Consensus 12 ~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~---~~G~~~~~~~~l~f 88 (279)
....+...|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.. .+|++|+++++| |
T Consensus 45 ~i~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~l-F 123 (365)
T 2y65_A 45 CISIAGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDI-F 123 (365)
T ss_dssp EEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHH-H
T ss_pred EEEECCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHH-H
Confidence 444556679999999999999999999999999999999999999999999999999999743 469999999999 9
Q ss_pred cccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce---------EEEeccccc-----------
Q psy37 89 DHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT---------FTMMGSKAR----------- 148 (279)
Q Consensus 89 ~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~---------~~~~g~~~~----------- 148 (279)
..+..... ...+.+..+++|+|++.++|||.+..... ..+.|....
T Consensus 124 ~~i~~~~~--------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~l 189 (365)
T 2y65_A 124 NHIYAMEV--------------NLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEV 189 (365)
T ss_dssp HHHHHCCS--------------CEEEEEEEEEEEEETTEEEETTCTTCCSBCEEECSSSCEEETTCCCEEECSHHHHHHH
T ss_pred HHHHhccC--------------CceEEEEEEEEEEECCeeeecccCCcCCceEEECCCCCEEecCCEEEecCCHHHHHHH
Confidence 87653211 11255666999999999999997443211 111111111
Q ss_pred -----------------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHH
Q psy37 149 -----------------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLG 181 (279)
Q Consensus 149 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~ 181 (279)
...+|+|++......|.+++|+..||+||++|+
T Consensus 190 l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg 269 (365)
T 2y65_A 190 IEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALG 269 (365)
T ss_dssp HHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCC----------------CCHHHHHHH
T ss_pred HHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHH
Confidence 112566666666678899999999999999999
Q ss_pred HHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHH
Q psy37 182 SVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTR 261 (279)
Q Consensus 182 ~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~ 261 (279)
+||.+|++ ....|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+++++|+|.|++|.++...
T Consensus 270 ~vI~aL~~---~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~ 346 (365)
T 2y65_A 270 NVISALAD---GNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAE 346 (365)
T ss_dssp HHHHHHHH---CCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSH
T ss_pred HHHHHHhc---CCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHH
Confidence 99999986 446799999999999999999999999999999999999999999999999999999999999877764
Q ss_pred -HHHHHHHHHHHHHH
Q psy37 262 -IIRELHDEITKLKA 275 (279)
Q Consensus 262 -~~~~l~~~~~~Lk~ 275 (279)
+.++|++|+++|+.
T Consensus 347 ~~~~~~~~e~~~~~~ 361 (365)
T 2y65_A 347 EWKRRYEKEKEKNAR 361 (365)
T ss_dssp HHHHC----------
T ss_pred HHHHHHHHHHHHHHH
Confidence 55667777776654
No 3
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=8e-62 Score=428.77 Aligned_cols=230 Identities=41% Similarity=0.587 Sum_probs=176.0
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC---CCCCCCCccccceeccccccc
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA---TTDNSPDAHKDFTFDHSYWSF 95 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~---~~G~~~~~~~~l~f~~~~~~~ 95 (279)
.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|... .+|++|+++++| |..+....
T Consensus 69 ~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~l-F~~i~~~~ 147 (372)
T 3b6u_A 69 TFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHI-FTHISRSQ 147 (372)
T ss_dssp EEECSEEECTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHH-HHHHHTCS
T ss_pred EEEcCeEeCCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHH-HHHhhhcc
Confidence 47888999999999999999999999999999999999999999999999999654 479999999999 98775421
Q ss_pred CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceE----------EEecccc------------------
Q psy37 96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF----------TMMGSKA------------------ 147 (279)
Q Consensus 96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~----------~~~g~~~------------------ 147 (279)
. ..+.+..+++|+|+|.++|||.+...... .+.|...
T Consensus 148 ~---------------~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~ 212 (372)
T 3b6u_A 148 N---------------QQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQ 212 (372)
T ss_dssp S---------------CEEEEEEEEEEEETTEEEETTSSCTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHH
T ss_pred C---------------CceEEEEEEEEEeCCEEEECCCCCCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHH
Confidence 1 12456669999999999999975432211 1111111
Q ss_pred -------------------------------------------ccccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHH
Q psy37 148 -------------------------------------------RNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVI 184 (279)
Q Consensus 148 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i 184 (279)
-...+|+|++......|.+++|+..||+||++|++||
T Consensus 213 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI 292 (372)
T 3b6u_A 213 NRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVI 292 (372)
T ss_dssp HHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHH
T ss_pred hcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHH
Confidence 0112566666666677899999999999999999999
Q ss_pred HHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHHHHH
Q psy37 185 SSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIR 264 (279)
Q Consensus 185 ~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~~~~ 264 (279)
.+|++ .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+++++|+|.|++|+++.+.+++
T Consensus 293 ~aL~~---~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~~~~~ 369 (372)
T 3b6u_A 293 SALVD---GKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLR 369 (372)
T ss_dssp HHHHC---C---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC--------
T ss_pred HHHhc---CCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCChHHHHHH
Confidence 99985 345799999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred HHH
Q psy37 265 ELH 267 (279)
Q Consensus 265 ~l~ 267 (279)
+|+
T Consensus 370 ~~~ 372 (372)
T 3b6u_A 370 EFQ 372 (372)
T ss_dssp ---
T ss_pred hcC
Confidence 653
No 4
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-62 Score=431.39 Aligned_cols=240 Identities=33% Similarity=0.448 Sum_probs=169.5
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP 97 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~ 97 (279)
..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.+++|++|+++.+| |..+......
T Consensus 65 ~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~l-F~~i~~~~~~ 143 (388)
T 3bfn_A 65 LKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDL-LQLTREEGAE 143 (388)
T ss_dssp EEEECSEEECTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHH-HHHHHHHTST
T ss_pred eEEEcceEecCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHH-HHHHHHhhcc
Confidence 358999999999999999999999999999999999999999999999999999999999999999999 9877532211
Q ss_pred CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce---------EEEec-------------------cccc-
Q psy37 98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT---------FTMMG-------------------SKAR- 148 (279)
Q Consensus 98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~---------~~~~g-------------------~~~~- 148 (279)
. . ...+.+..+++|+|+|.++|||.+..... ..+.| ...|
T Consensus 144 ~-~----------~~~~~V~vS~lEIYnE~i~DLL~~~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~ 212 (388)
T 3bfn_A 144 G-R----------PWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRT 212 (388)
T ss_dssp T-C----------SEEEEEEEEEEEEETTEEEESSSCSSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC---
T ss_pred C-C----------CceEEEEEEEEEEECCeeeehhccCCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccc
Confidence 1 0 11245666999999999999997543211 11111 1011
Q ss_pred ---------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q psy37 149 ---------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAE 189 (279)
Q Consensus 149 ---------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~~ 189 (279)
...+|+|+.......|.+++|+..||+||++|++||.+|++
T Consensus 213 ~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~ 292 (388)
T 3bfn_A 213 VGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQ 292 (388)
T ss_dssp --------CGGGSEEEEEEEEEEEESSTTCCEEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHT
T ss_pred cccccCCCCCCCCeEEEEEEEEEeccCCCCceeEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhc
Confidence 11256666666667889999999999999999999999985
Q ss_pred hhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHHHHHHHHHH
Q psy37 190 LSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDE 269 (279)
Q Consensus 190 ~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~~~~~l~~~ 269 (279)
+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+++++|+|.|++|++.....+..+++.
T Consensus 293 ----~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l~~~k~~ 368 (388)
T 3bfn_A 293 ----GLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVKLS 368 (388)
T ss_dssp ----TCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHHHHHHHHHCSEEEEC--------------------
T ss_pred ----CCCCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999999999999999999999998887766555544
Q ss_pred HHHH
Q psy37 270 ITKL 273 (279)
Q Consensus 270 ~~~L 273 (279)
.+.|
T Consensus 369 ~~~l 372 (388)
T 3bfn_A 369 QKEL 372 (388)
T ss_dssp ----
T ss_pred HHHh
Confidence 4444
No 5
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=2.8e-61 Score=422.98 Aligned_cols=225 Identities=44% Similarity=0.617 Sum_probs=177.6
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP 97 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~ 97 (279)
..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.+++|++|+++++| |..+.....
T Consensus 56 ~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~l-F~~i~~~~~- 133 (350)
T 2vvg_A 56 RTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHL-FDAINSSSS- 133 (350)
T ss_dssp EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHH-HHHHHTCCT-
T ss_pred eEeeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHH-HHHHHhhcc-
Confidence 358899999999999999999999999999999999999999999999999999999999999999999 987752111
Q ss_pred CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccC------------------------------------------
Q psy37 98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTG------------------------------------------ 135 (279)
Q Consensus 98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~------------------------------------------ 135 (279)
...+.+..+++|+|+|.++|||...
T Consensus 134 -------------~~~~~v~vS~~EIYnE~i~DLL~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~ 200 (350)
T 2vvg_A 134 -------------NQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHV 200 (350)
T ss_dssp -------------TEEEEEEEEEEEEETTEEEETTTTEEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC--
T ss_pred -------------CCcEEEEEEEEEEeCCEEEEcccCCcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhcccc
Confidence 1124566699999999999999521
Q ss_pred --------CCceEEEe------------------ccccccccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q psy37 136 --------SGKTFTMM------------------GSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAE 189 (279)
Q Consensus 136 --------~~~~~~~~------------------g~~~~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~~ 189 (279)
++++|.+. +...-...+|+|++......|.+++|+..||+||++|++||.+|++
T Consensus 201 ~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~ 280 (350)
T 2vvg_A 201 AATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVE 280 (350)
T ss_dssp --------CTTCEEEEEEEEEEEEC----CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 11222111 0011122256676666667889999999999999999999999996
Q ss_pred hhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHH
Q psy37 190 LSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTR 261 (279)
Q Consensus 190 ~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~ 261 (279)
+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+++++|+|.|++|+++.+.
T Consensus 281 ----~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~~ 348 (350)
T 2vvg_A 281 ----GATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDA 348 (350)
T ss_dssp ----TCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTTC
T ss_pred ----CCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccceecCCchhc
Confidence 55899999999999999999999999999999999999999999999999999999999999987653
No 6
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=7.3e-60 Score=425.46 Aligned_cols=240 Identities=45% Similarity=0.712 Sum_probs=175.7
Q ss_pred cceeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceec
Q psy37 10 HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFD 89 (279)
Q Consensus 10 ~~~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~ 89 (279)
.+.|+||++|+..|...++.++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.+++||+|+++++| |.
T Consensus 95 ~~~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~l-F~ 173 (443)
T 2owm_A 95 EKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDL-FQ 173 (443)
T ss_dssp CEEEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHH-HH
T ss_pred CceEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHH-HH
Confidence 56778888777776666678999999999999999999999999999999999999999999999999999999999 98
Q ss_pred ccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC--------------ceEEEeccc---------
Q psy37 90 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG--------------KTFTMMGSK--------- 146 (279)
Q Consensus 90 ~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~--------------~~~~~~g~~--------- 146 (279)
.+....... . +..+.+..+++|+|+|.|+|||.+... ....+.|..
T Consensus 174 ~i~~~~~~~-~----------~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e 242 (443)
T 2owm_A 174 RIASAQDET-P----------NISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEE 242 (443)
T ss_dssp HHHHTTTTS-T----------TCEEEEEEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHH
T ss_pred HHHhhhccc-C----------CceEEEEEEEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHH
Confidence 775432110 0 122556669999999999999975211 011111111
Q ss_pred ----------cc-------------------------------------------cccCccccchhhhhhhhhhhhhhHH
Q psy37 147 ----------AR-------------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHI 173 (279)
Q Consensus 147 ----------~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~i 173 (279)
.| ...+|+|++......|.+++|+..|
T Consensus 243 ~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~I 322 (443)
T 2owm_A 243 IIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNI 322 (443)
T ss_dssp HHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCS
T ss_pred HHHHHHHHHhhCCcccCcCCCccCCCeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhh
Confidence 11 1114556555555778999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCC------------------CCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHH
Q psy37 174 NKSLVTLGSVISSLAELSTK------------------KSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSET 235 (279)
Q Consensus 174 n~Sl~~L~~~i~~l~~~~~~------------------~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~t 235 (279)
|+||++|++||.+|++.+.. +..||||||||||+||+|+|||+++|+||+||+|. +++||
T Consensus 323 NkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ET 400 (443)
T 2owm_A 323 NKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDET 400 (443)
T ss_dssp SHHHHHHHHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHH
T ss_pred cHHHHHHHHHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHH
Confidence 99999999999999864321 23589999999999999999999999999999996 69999
Q ss_pred HHHHHHHHHhccccCcccccC-CccHHHH
Q psy37 236 LSTLRYANRAKNIINKPTVNE-DPNTRII 263 (279)
Q Consensus 236 l~tL~fa~~~~~i~~~~~~~~-~~~~~~~ 263 (279)
++||+||+++++|+|+|++|+ ++.+...
T Consensus 401 lsTLrfA~rak~I~n~~~vN~~d~~~~~~ 429 (443)
T 2owm_A 401 LSTLRYADQAKRIRTRAVVNQVDGVSAAE 429 (443)
T ss_dssp HHHHHHHHHHTTCEECCCCCCC-------
T ss_pred HHHHHHHHHHhhccccceecccCCccHHH
Confidence 999999999999999999998 6555443
No 7
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=3.5e-60 Score=418.13 Aligned_cols=218 Identities=38% Similarity=0.566 Sum_probs=170.4
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC-----------CCCCCCCccccc
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA-----------TTDNSPDAHKDF 86 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~-----------~~G~~~~~~~~l 86 (279)
..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.. .+|++|+++++|
T Consensus 55 ~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~l 134 (359)
T 1x88_A 55 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQI 134 (359)
T ss_dssp EEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHH
T ss_pred eEEeceEEEeccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHH
Confidence 358999999999999999999999999999999999999999999999999999754 369999999999
Q ss_pred eecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc--------------eEEEeccccc----
Q psy37 87 TFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK--------------TFTMMGSKAR---- 148 (279)
Q Consensus 87 ~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~--------------~~~~~g~~~~---- 148 (279)
|..+... ...+.+..+++|+|+|.++|||.+.... ...+.|....
T Consensus 135 -F~~i~~~----------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s 197 (359)
T 1x88_A 135 -FEKLTDN----------------GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHN 197 (359)
T ss_dssp -HHHTSSS----------------SEEEEEEEEEEEEETTEEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECS
T ss_pred -HHHHhcc----------------CceEEEEEEEEEEeCceeeehhcccccccccceEEeccCCCCCEEEcCCEEEEcCC
Confidence 9876421 1225566699999999999999764321 1112211111
Q ss_pred ---------------------------------------------------------cccCccccchhhhhhhhhhhhhh
Q psy37 149 ---------------------------------------------------------NFGEGKDCVCSIVEAGDRLKEGA 171 (279)
Q Consensus 149 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~ 171 (279)
...+|+|++......|.+++|+.
T Consensus 198 ~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~ 277 (359)
T 1x88_A 198 KDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAG 277 (359)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCEEEEEEEEEEEECCCCCC---------------
T ss_pred HHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHh
Confidence 11145666655667789999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCc
Q psy37 172 HINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINK 251 (279)
Q Consensus 172 ~in~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~ 251 (279)
.||+||++|++||.+|++ +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++|+|.
T Consensus 278 ~INkSL~aLg~vI~aL~~----~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~ 353 (359)
T 1x88_A 278 NINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 353 (359)
T ss_dssp CCCHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCC
T ss_pred hhhHHHHHHHHHHHHHhc----CCCCCccccchHHHHHHHHhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCc
Confidence 999999999999999995 6789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q psy37 252 PTVNE 256 (279)
Q Consensus 252 ~~~~~ 256 (279)
|++|+
T Consensus 354 p~vn~ 358 (359)
T 1x88_A 354 PEVNQ 358 (359)
T ss_dssp CC---
T ss_pred ceeCC
Confidence 99986
No 8
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=5.6e-60 Score=414.97 Aligned_cols=225 Identities=36% Similarity=0.516 Sum_probs=180.4
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP 97 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~ 97 (279)
..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.+++|++|+++++| |..+.....
T Consensus 44 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~l-F~~i~~~~~- 121 (349)
T 1t5c_A 44 KSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDI-FQKIKKFPD- 121 (349)
T ss_dssp CEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHH-HHHGGGCTT-
T ss_pred eEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHH-HHHHHhCcC-
Confidence 358999999999999999999999999999999999999999999999999999999999999999999 988754211
Q ss_pred CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC-ceE----------EEeccc-------------------c
Q psy37 98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG-KTF----------TMMGSK-------------------A 147 (279)
Q Consensus 98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~-~~~----------~~~g~~-------------------~ 147 (279)
..+.+..+++|+|+|.++|||.+... ... .+.|.. .
T Consensus 122 --------------~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~ 187 (349)
T 1t5c_A 122 --------------REFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKS 187 (349)
T ss_dssp --------------EEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHT
T ss_pred --------------CcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcc
Confidence 12455669999999999999964421 111 111111 0
Q ss_pred c--------------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHH
Q psy37 148 R--------------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSV 183 (279)
Q Consensus 148 ~--------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~ 183 (279)
| ...+|+|+.......|.+++|+..||+||++|++|
T Consensus 188 R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~v 267 (349)
T 1t5c_A 188 RHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQV 267 (349)
T ss_dssp TSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHH
T ss_pred cccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHH
Confidence 0 11145555555556788999999999999999999
Q ss_pred HHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHHH
Q psy37 184 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRI 262 (279)
Q Consensus 184 i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~~ 262 (279)
|.+|++.+ ...|||||+||||+||+|+|||+++|+||+||+|. +++||++||+||+++++|+|.|++|+++....
T Consensus 268 I~aL~~~~--~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~~~ 342 (349)
T 1t5c_A 268 IKKLSDGQ--VGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDEL 342 (349)
T ss_dssp HHHHHHTC--CTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC----
T ss_pred HHHHhccC--CCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHHHHHHHHHHhhcccCceeccCCCCCC
Confidence 99998622 24699999999999999999999999999999996 69999999999999999999999998776654
No 9
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=8.1e-60 Score=414.87 Aligned_cols=226 Identities=36% Similarity=0.470 Sum_probs=189.6
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCC----CCCCCCCCCccccceecccccc
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS----KATTDNSPDAHKDFTFDHSYWS 94 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~----~~~~G~~~~~~~~l~f~~~~~~ 94 (279)
.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+ ...+|++|+++++| |..+...
T Consensus 48 ~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~l-F~~i~~~ 126 (355)
T 1goj_A 48 SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQI-FTSILSS 126 (355)
T ss_dssp EEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHH-HHHHHTS
T ss_pred EEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHH-HHHHHhc
Confidence 589999999999999999999999999999999999999999999999999996 45689999999999 9876432
Q ss_pred cCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce---------EEEeccccc-----------------
Q psy37 95 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT---------FTMMGSKAR----------------- 148 (279)
Q Consensus 95 ~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~---------~~~~g~~~~----------------- 148 (279)
.. ...+.+..+++|+|+|.++|||.+..... ..+.|....
T Consensus 127 ~~--------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~ 192 (355)
T 1goj_A 127 AA--------------NIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGN 192 (355)
T ss_dssp CT--------------TEEEEEEEEEEEEETTEEEETTSTTCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHH
T ss_pred cc--------------CceEEEEEEEEEEECCEEEEcccCccCCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHh
Confidence 11 11255666999999999999997543211 111111111
Q ss_pred -----------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy37 149 -----------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSL 187 (279)
Q Consensus 149 -----------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l 187 (279)
...+|+|++......|.+++|+..||+||++|++||.+|
T Consensus 193 ~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL 272 (355)
T 1goj_A 193 ARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINAL 272 (355)
T ss_dssp HHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHH
T ss_pred hcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHH
Confidence 112566666666677899999999999999999999999
Q ss_pred HhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHHH
Q psy37 188 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRI 262 (279)
Q Consensus 188 ~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~~ 262 (279)
++ .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++|+|.|++|.++....
T Consensus 273 ~~---~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~~ 344 (355)
T 1goj_A 273 TD---GKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAE 344 (355)
T ss_dssp HH---CSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSCSS
T ss_pred hc---CCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHHHHHHHHHHhhccCCceeCCCCCHHH
Confidence 86 4567999999999999999999999999999999999999999999999999999999999998776543
No 10
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=6.4e-60 Score=418.07 Aligned_cols=219 Identities=38% Similarity=0.536 Sum_probs=169.5
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC-----------CCCCCCCccccce
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA-----------TTDNSPDAHKDFT 87 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~-----------~~G~~~~~~~~l~ 87 (279)
.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.. ++|++|+++++|
T Consensus 68 ~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~l- 146 (373)
T 2wbe_C 68 KFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHL- 146 (373)
T ss_dssp EEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHH-
T ss_pred EEeccEEeccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHH-
Confidence 47888889999999999999999999999999999999999999999999999764 679999999999
Q ss_pred ecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce------------EEEeccccc-------
Q psy37 88 FDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT------------FTMMGSKAR------- 148 (279)
Q Consensus 88 f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~------------~~~~g~~~~------- 148 (279)
|..+.... ..+.+..+++|+|+|.++|||.+..... ..+.|....
T Consensus 147 F~~i~~~~----------------~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e 210 (373)
T 2wbe_C 147 FDELRMME----------------VEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDD 210 (373)
T ss_dssp HHHHHHCC----------------SCEEEEEEEEEEETTEEEESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHH
T ss_pred HHHHHhcC----------------ceEEEEEEEEEEeCCeEEECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHH
Confidence 98764321 1255666999999999999997543211 111111111
Q ss_pred ------------------------------------------------------cccCccccchhhhhh-hhhhhhhhHH
Q psy37 149 ------------------------------------------------------NFGEGKDCVCSIVEA-GDRLKEGAHI 173 (279)
Q Consensus 149 ------------------------------------------------------~~~~~~~~~~~~~~~-~~~~~e~~~i 173 (279)
...+|+|++...... |.+++|+..|
T Consensus 211 ~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~I 290 (373)
T 2wbe_C 211 VYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNI 290 (373)
T ss_dssp HHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCCEEEEEEEEEEECCCC--------------------
T ss_pred HHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHH
Confidence 111444544444344 8899999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccc
Q psy37 174 NKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPT 253 (279)
Q Consensus 174 n~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~ 253 (279)
|+||++|++||.+|++ +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++|+|+|+
T Consensus 291 NkSL~aLg~vI~aL~~----~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~ 366 (373)
T 2wbe_C 291 NQSLLTLGRVITALVD----RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPE 366 (373)
T ss_dssp CHHHHHHHHHHHHHHH----CSSCCCGGGCHHHHHTHHHHHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCC
T ss_pred HHHHHHHHHHHHHHHc----CCCcCccccchHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccce
Confidence 9999999999999996 568999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCc
Q psy37 254 VNEDP 258 (279)
Q Consensus 254 ~~~~~ 258 (279)
+|++.
T Consensus 367 vN~~~ 371 (373)
T 2wbe_C 367 VNQKL 371 (373)
T ss_dssp CCEEC
T ss_pred ecccc
Confidence 99753
No 11
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=2.4e-59 Score=413.83 Aligned_cols=233 Identities=48% Similarity=0.731 Sum_probs=168.0
Q ss_pred cceeeeccceeecCC-CCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC--CCCCCCCCccccc
Q psy37 10 HKDFTFDHSYWSFDP-SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK--ATTDNSPDAHKDF 86 (279)
Q Consensus 10 ~~~~~fd~~~f~fd~-vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~--~~~G~~~~~~~~l 86 (279)
.+.|+||++|+..+. --.+.++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+. .++||+|+++++|
T Consensus 47 ~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~l 126 (366)
T 2zfi_A 47 PKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDL 126 (366)
T ss_dssp CEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHH
T ss_pred ceEEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHH
Confidence 345555555443211 1112289999999999999999999999999999999999999999984 5689999999999
Q ss_pred eecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceE----------EEecccc---------
Q psy37 87 TFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF----------TMMGSKA--------- 147 (279)
Q Consensus 87 ~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~----------~~~g~~~--------- 147 (279)
|..+...... ...+.+..+++|+|+|.++|||.+...... .+.|...
T Consensus 127 -F~~i~~~~~~-------------~~~~~v~vS~~EIYnE~v~DLL~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~ 192 (366)
T 2zfi_A 127 -FSRINDTTND-------------NMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDI 192 (366)
T ss_dssp -HHHHHTCCCT-------------TEEEEEEEEEEEEETTEEEETTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHH
T ss_pred -HHHHhhcccC-------------CeeEEEEEEEEEeeCCeEEEccccccCCCceEEEcCCCCEEEeCCEEEEECCHHHH
Confidence 9877533211 112556669999999999999976532211 1111111
Q ss_pred -----------------------------------------------------ccccCccccchhhhhhhhhhhhhhHHH
Q psy37 148 -----------------------------------------------------RNFGEGKDCVCSIVEAGDRLKEGAHIN 174 (279)
Q Consensus 148 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~~~in 174 (279)
-...+|+|++......|.+++|+..||
T Consensus 193 ~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN 272 (366)
T 2zfi_A 193 QDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANIN 272 (366)
T ss_dssp HHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHH
T ss_pred HHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEeEEEEEeCCCCccccccCCCccchhhhhhHh
Confidence 011256666666667789999999999
Q ss_pred HHHHHHHHHHHHHHhhh--------CCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhc
Q psy37 175 KSLVTLGSVISSLAELS--------TKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 246 (279)
Q Consensus 175 ~Sl~~L~~~i~~l~~~~--------~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~ 246 (279)
+||++|++||.+|++.+ ..+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|++
T Consensus 273 kSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak 352 (366)
T 2zfi_A 273 KSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352 (366)
T ss_dssp HHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHh
Confidence 99999999999998743 1246799999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccC
Q psy37 247 NIINKPTVNE 256 (279)
Q Consensus 247 ~i~~~~~~~~ 256 (279)
+|++.|.++.
T Consensus 353 ~I~~~~~~~~ 362 (366)
T 2zfi_A 353 QIRNTVSVNH 362 (366)
T ss_dssp ----------
T ss_pred hccCCCCCCC
Confidence 9999998864
No 12
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=9e-59 Score=406.19 Aligned_cols=228 Identities=30% Similarity=0.419 Sum_probs=178.6
Q ss_pred CcceeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC------CCCCCCCCc
Q psy37 9 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK------ATTDNSPDA 82 (279)
Q Consensus 9 ~~~~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~------~~~G~~~~~ 82 (279)
..+....+...|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||.|+. +++||+|++
T Consensus 52 ~~~~~~~~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra 131 (344)
T 3dc4_A 52 DGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRA 131 (344)
T ss_dssp CSSEEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHH
T ss_pred CCceEEecCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHH
Confidence 34567778888999999999999999999999999999999999999999999999999999874 568999999
Q ss_pred cccceecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC-------------------------
Q psy37 83 HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG------------------------- 137 (279)
Q Consensus 83 ~~~l~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~------------------------- 137 (279)
+++| |..+......... .+.+..+++|+|+|.++|||.....
T Consensus 132 ~~~L-F~~i~~~~~~~~~------------~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~~v~s~~e~~~l 198 (344)
T 3dc4_A 132 LGDI-FERVTARQENNKD------------AIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHI 198 (344)
T ss_dssp HHHH-HHHHHHSSSSCSS------------CCEEEEEEEEEESSCEEETTSSCTTSBCCSSTTTCSCCEECSSHHHHHHH
T ss_pred HHHH-HHHHHhhhhcccc------------ceEEEEEEEEEeCCeeEEccCCCCCCccccccccCceecccCCHHHHHHH
Confidence 9999 9877533222111 1445569999999999999964322
Q ss_pred --------------------ceEEEe----------ccccccccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy37 138 --------------------KTFTMM----------GSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSL 187 (279)
Q Consensus 138 --------------------~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l 187 (279)
++|.+. +...-...+|+|++......|.+++|+..||+||++|++||.+|
T Consensus 199 l~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL 278 (344)
T 3dc4_A 199 LELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM 278 (344)
T ss_dssp HHHHHHTCC----------CCEEEEEEEEEECSSCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccCCCCCCCceEEEEEEEEecCcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHH
Confidence 111111 01111223677777777788999999999999999999999999
Q ss_pred HhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccc
Q psy37 188 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPT 253 (279)
Q Consensus 188 ~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~ 253 (279)
++ +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++.+..|.
T Consensus 279 ~~----~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 279 AA----GHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp HT----TCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred hc----cCCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 95 678999999999999999999999999999999999999999999999999999988774
No 13
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.9e-59 Score=409.56 Aligned_cols=210 Identities=34% Similarity=0.442 Sum_probs=157.9
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC---CCCCCCCccccceeccccccc
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA---TTDNSPDAHKDFTFDHSYWSF 95 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~---~~G~~~~~~~~l~f~~~~~~~ 95 (279)
.|.||+||+ +++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.. ++|++||++++| |+......
T Consensus 73 ~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~l-F~~~~~~~ 150 (359)
T 3nwn_A 73 SFKLDGVLH-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQV-FRMIEERP 150 (359)
T ss_dssp EEECSEEEE-SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHH-HHHHHTCT
T ss_pred EeecCccCC-CCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHH-HHHhhcCC
Confidence 378888896 6899999999999999999999999999999999999999999754 489999999999 98765332
Q ss_pred CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc--------------eEEEecccc--------------
Q psy37 96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK--------------TFTMMGSKA-------------- 147 (279)
Q Consensus 96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~--------------~~~~~g~~~-------------- 147 (279)
.. .+.+..+++|+|+|.++|||...... ...+.+...
T Consensus 151 ~~---------------~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~ 215 (359)
T 3nwn_A 151 TH---------------AITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLF 215 (359)
T ss_dssp TS---------------CEEEEEEEEEEETTEEEETTSSSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHH
T ss_pred CC---------------cEEEEEEEEEEeccccccccccccccccccccceEEecCCceEEeccEEEEecCHHHHHHHHH
Confidence 21 14455699999999999999742110 011111111
Q ss_pred ----------------------------------------------ccccCccccchhhhhhhhhhhhhhHHHHHHHHHH
Q psy37 148 ----------------------------------------------RNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLG 181 (279)
Q Consensus 148 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~ 181 (279)
....+|+|++......|++++|+..||+||++|+
T Consensus 216 ~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg 295 (359)
T 3nwn_A 216 EGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLE 295 (359)
T ss_dssp HHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEEEEEEEEECCCCC----------------CCSTHHHHHH
T ss_pred hhhhhcccccccCccccCcceEEEEEEEEeecccccCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHH
Confidence 1112566666666678899999999999999999
Q ss_pred HHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37 182 SVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248 (279)
Q Consensus 182 ~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i 248 (279)
+||.+|++ .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+|+|
T Consensus 296 ~vI~aL~~---~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 296 QAIIALGD---QKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp HHHHHHHC--------CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHHHHHh---cCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 99999985 45679999999999999999999999999999999999999999999999999986
No 14
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=4.7e-58 Score=403.89 Aligned_cols=225 Identities=48% Similarity=0.744 Sum_probs=177.0
Q ss_pred CcceeeeccceeecCC-CCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccce
Q psy37 9 AHKDFTFDHSYWSFDP-SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFT 87 (279)
Q Consensus 9 ~~~~~~fd~~~f~fd~-vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~ 87 (279)
..+.|+||++||.+|. ++++.++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.+++|++|+++++|
T Consensus 49 ~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~l- 127 (354)
T 3gbj_A 49 QPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGL- 127 (354)
T ss_dssp CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHH-
T ss_pred CceEEEeeEEeccCccccccccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHH-
Confidence 4678999999998886 45788999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC------------------------------
Q psy37 88 FDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG------------------------------ 137 (279)
Q Consensus 88 f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~------------------------------ 137 (279)
|..+....... ..+.+..+++|+|+|.++|||.+...
T Consensus 128 F~~i~~~~~~~-------------~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~ 194 (354)
T 3gbj_A 128 FERTQKEENEE-------------QSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDI 194 (354)
T ss_dssp HHHHHHHCBTT-------------EEEEEEEEEEEEETTEEEETTC------CBCBC------CCBTTCCCEEECSHHHH
T ss_pred HHHHHhhcccc-------------cceeeeceeEEEecCeeeEccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHH
Confidence 97764322111 12455669999999999999964321
Q ss_pred -----------------------ceEEEe--------------------ccccccccCccccchhhhhhhhhhhhhhHHH
Q psy37 138 -----------------------KTFTMM--------------------GSKARNFGEGKDCVCSIVEAGDRLKEGAHIN 174 (279)
Q Consensus 138 -----------------------~~~~~~--------------------g~~~~~~~~~~~~~~~~~~~~~~~~e~~~in 174 (279)
++|.+. +...-...+|+|+.......|.+++|+..||
T Consensus 195 ~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN 274 (354)
T 3gbj_A 195 ESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNIN 274 (354)
T ss_dssp HHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHH
T ss_pred HHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhh
Confidence 111100 0001112256666666667889999999999
Q ss_pred HHHHHHHHHHHHHHhhhC--CCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhcc
Q psy37 175 KSLVTLGSVISSLAELST--KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN 247 (279)
Q Consensus 175 ~Sl~~L~~~i~~l~~~~~--~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~ 247 (279)
+||++|++||.+|++.+. .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||.+|+.
T Consensus 275 ~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 275 KSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp HHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 999999999999987432 3567999999999999999999999999999999999999999999999999985
No 15
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=4.2e-58 Score=399.79 Aligned_cols=217 Identities=39% Similarity=0.516 Sum_probs=180.5
Q ss_pred eeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCC---CCCCCCccccceec
Q psy37 13 FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKAT---TDNSPDAHKDFTFD 89 (279)
Q Consensus 13 ~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~---~G~~~~~~~~l~f~ 89 (279)
...+...|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..+ +|++|+++++| |.
T Consensus 39 ~~~~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~l-F~ 117 (325)
T 1bg2_A 39 VVIASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDI-FN 117 (325)
T ss_dssp EEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHH-HH
T ss_pred EEECCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHH-HH
Confidence 344556689999999999999999999999999999999999999999999999999997554 59999999999 98
Q ss_pred ccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce---------EEEeccccc------------
Q psy37 90 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT---------FTMMGSKAR------------ 148 (279)
Q Consensus 90 ~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~---------~~~~g~~~~------------ 148 (279)
.+..... ...+.+..+++|+|+|.++|||.+..... ..+.|....
T Consensus 118 ~i~~~~~--------------~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll 183 (325)
T 1bg2_A 118 YIYSMDE--------------NLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTI 183 (325)
T ss_dssp HHHHHCS--------------SEEEEEEEEEEEEETTEEEESSCTTCCSBCEEECTTSCEEETTCCCEEECSHHHHHHHH
T ss_pred HHHhccC--------------CceEEEEEEEEEEecCeeeecccCCCCCceEEECCCCCEEecCceEEeCCCHHHHHHHH
Confidence 7643211 12255666999999999999997533211 111111111
Q ss_pred ----------------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHH
Q psy37 149 ----------------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGS 182 (279)
Q Consensus 149 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~ 182 (279)
...+|+|+.......|.+++|+..||+||++|++
T Consensus 184 ~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~ 263 (325)
T 1bg2_A 184 DEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGN 263 (325)
T ss_dssp HHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHH
T ss_pred HHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEECCCCCcccccCCccccchHHHHHHHHHHHHHH
Confidence 1115666666666788999999999999999999
Q ss_pred HHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37 183 VISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248 (279)
Q Consensus 183 ~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i 248 (279)
||.+|++ +..|||||+||||+||+|+|||+++|+||+||||+..+++||++||+||+|+|+|
T Consensus 264 vI~aL~~----~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 264 VISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHT----TCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHc----CCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHHHHHHHHhccC
Confidence 9999995 5789999999999999999999999999999999999999999999999999986
No 16
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=7.8e-58 Score=401.48 Aligned_cols=218 Identities=33% Similarity=0.489 Sum_probs=174.6
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP 97 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~ 97 (279)
..|.||+||+++++|++||+.+ .|+|+.+++|+|+||||||||||||||||+|+ ++|++|+++++| |..+......
T Consensus 52 ~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~l-F~~i~~~~~~ 127 (347)
T 1f9v_A 52 HEFKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHI-FNWINKLKTK 127 (347)
T ss_dssp EEEEESEEECTTCCHHHHHHHH-HHHHGGGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHH-HHHHHHHGGG
T ss_pred eEEeeCEEECCCCCHHHHHHHH-HHHHHHhcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHH-HHHHHhhhhc
Confidence 3589999999999999999986 59999999999999999999999999999996 479999999999 9876532211
Q ss_pred CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc-------------------eEEEeccc------------
Q psy37 98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK-------------------TFTMMGSK------------ 146 (279)
Q Consensus 98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~-------------------~~~~~g~~------------ 146 (279)
...+.+..+++|+|+|.++|||.+.... ...+.|..
T Consensus 128 -------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ 194 (347)
T 1f9v_A 128 -------------GWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEI 194 (347)
T ss_dssp -------------TCEEEEEEEEEEEETTEEEETTC-------------CCCEEEETTTTEEEETTCCCEECSSGGGHHH
T ss_pred -------------CCceEEEEEEEEEECCeeeeccCCccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHH
Confidence 1125566699999999999999754321 11111111
Q ss_pred -------cc---------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHH
Q psy37 147 -------AR---------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTL 180 (279)
Q Consensus 147 -------~~---------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L 180 (279)
.| ...+|+|++......|.+++|+..||+||++|
T Consensus 195 ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aL 274 (347)
T 1f9v_A 195 ILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCL 274 (347)
T ss_dssp HHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCCceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHH
Confidence 11 11156666655667789999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccc
Q psy37 181 GSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPT 253 (279)
Q Consensus 181 ~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~ 253 (279)
++||.+|++.+ .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++++..++
T Consensus 275 g~vI~aL~~~~-~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 275 GDVIHALGQPD-STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp HHHHHHHTSCC----CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred HHHHHHHhccc-CCCCcCccccCHHHHHHHHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 99999998522 1247999999999999999999999999999999999999999999999999999998875
No 17
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=4.8e-58 Score=400.27 Aligned_cols=211 Identities=35% Similarity=0.544 Sum_probs=171.1
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCCC
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPS 98 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~~ 98 (279)
.|.||+||+++++|++||+.+ .|+|+.+++|+|+||||||||||||||||+|+.+++|++|+++++| |..+.....
T Consensus 49 ~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~l-F~~i~~~~~-- 124 (330)
T 2h58_A 49 SFELDKVFSPQASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLL-FSEVQEKAS-- 124 (330)
T ss_dssp EEECSEEECTTCCHHHHHTTT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHH-HHHHHTSCT--
T ss_pred EEecCeEeCCCCCcHhHHHHH-HHHHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHH-HHhhhcccC--
Confidence 589999999999999999985 7999999999999999999999999999999999999999999999 987753211
Q ss_pred CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce------------EEEecccc-------------------
Q psy37 99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT------------FTMMGSKA------------------- 147 (279)
Q Consensus 99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~------------~~~~g~~~------------------- 147 (279)
+..+.+..+++|+|+|.++|||.+..... ..+.|...
T Consensus 125 ------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~ 192 (330)
T 2h58_A 125 ------------DWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTN 192 (330)
T ss_dssp ------------TEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHH
T ss_pred ------------CceEEEEEEEEEEECCChhhcccccccccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhh
Confidence 11255666999999999999996432211 11111111
Q ss_pred c---------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy37 148 R---------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLA 188 (279)
Q Consensus 148 ~---------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~ 188 (279)
| ...+|+|++......|.+++|+..||+||++|++||.+|+
T Consensus 193 R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~ 272 (330)
T 2h58_A 193 RTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALR 272 (330)
T ss_dssp TTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHh
Confidence 1 1114566665566778999999999999999999999998
Q ss_pred hhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhcccc
Q psy37 189 ELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNII 249 (279)
Q Consensus 189 ~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~ 249 (279)
+ +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++|+
T Consensus 273 ~----~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 273 S----RQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp T----TCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred c----CCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhhCc
Confidence 4 67899999999999999999999999999999999999999999999999999986
No 18
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=4.4e-58 Score=404.19 Aligned_cols=214 Identities=36% Similarity=0.488 Sum_probs=158.5
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCCC
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPS 98 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~~ 98 (279)
.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.+++|++|+++.+| |..+......
T Consensus 73 ~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~l-f~~i~~~~~~- 150 (355)
T 3lre_A 73 KFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHL-YKCMDEIKEE- 150 (355)
T ss_dssp EEECSEEECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHH-HHHHHHTTTT-
T ss_pred eEEeceEECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHH-HHhhhhhccC-
Confidence 58999999999999999999999999999999999999999999999999999999999999999999 9876532111
Q ss_pred CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc--------eEEEecccc-----------------------
Q psy37 99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK--------TFTMMGSKA----------------------- 147 (279)
Q Consensus 99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~--------~~~~~g~~~----------------------- 147 (279)
..+.+..+++|+|+|.++|||.+...- ...+.|...
T Consensus 151 -------------~~~~v~vS~~EIYnE~i~DLL~~~~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~ 217 (355)
T 3lre_A 151 -------------KICSTAVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQH 217 (355)
T ss_dssp -------------EEEEEEEEEEEEETTEEEESSSCCCCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC
T ss_pred -------------ceEEEEEEEEEEECCEEEECcCCCCCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcc
Confidence 113445599999999999999643211 111111110
Q ss_pred --------------------------------------ccccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q psy37 148 --------------------------------------RNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAE 189 (279)
Q Consensus 148 --------------------------------------~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~~ 189 (279)
-...+|+|+.......|.+++|+..||+||++|++||.+|++
T Consensus 218 ~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~ 297 (355)
T 3lre_A 218 PTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALAD 297 (355)
T ss_dssp -----CBCTTCEEEEEEEEEEEETTSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC-
T ss_pred cccCcCCCCCCcEEEEEEEEEecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111256666666667889999999999999999999999986
Q ss_pred hhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37 190 LSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248 (279)
Q Consensus 190 ~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i 248 (279)
.+ .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+|+|
T Consensus 298 ~~-~~~~hiPyRdSkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 298 SK-RKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp --------CCGGGSHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred cc-CCCCcCCcccCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 32 23469999999999999999999999999999999999999999999999999976
No 19
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=1.6e-57 Score=400.61 Aligned_cols=220 Identities=30% Similarity=0.341 Sum_probs=170.8
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhcc-ccCeeEeeccCcCCCceeEecCCC-----CCCCCCCCccccceeccc
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFTMMGSK-----ATTDNSPDAHKDFTFDHS 91 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~-G~n~~v~~yG~tgSGKT~Tl~G~~-----~~~G~~~~~~~~l~f~~~ 91 (279)
..|.||+||+++++|++||+.++.|+|+++++ |+|+||||||||||||||||+|+. +.+|++|+++.+| |..+
T Consensus 50 ~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~l-F~~i 128 (360)
T 1ry6_A 50 HEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDI-FTFL 128 (360)
T ss_dssp EEEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHH-HHHH
T ss_pred ceEEeeeEecCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHH-HHHH
Confidence 45899999999999999999999999999995 999999999999999999999974 6799999999999 9876
Q ss_pred ccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceE--------EEec-------------------
Q psy37 92 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF--------TMMG------------------- 144 (279)
Q Consensus 92 ~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~--------~~~g------------------- 144 (279)
...... ..+.+..+++|+|+|.++|||........ .+.|
T Consensus 129 ~~~~~~--------------~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g 194 (360)
T 1ry6_A 129 NIYDKD--------------NTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDG 194 (360)
T ss_dssp HHHCSS--------------SCEEEEEEEEEEETTEEEESCCC-----------CCBCGGGSCCEEECSHHHHHHHHHHH
T ss_pred HhhccC--------------CceEEEEEEEEeeCCeeEEcccCCccceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHH
Confidence 432111 11345569999999999999975321100 0000
Q ss_pred ccc------------------------------------ccccCccccchhhhhhh-hhhhhhhHHHHHHHHHHHHHHHH
Q psy37 145 SKA------------------------------------RNFGEGKDCVCSIVEAG-DRLKEGAHINKSLVTLGSVISSL 187 (279)
Q Consensus 145 ~~~------------------------------------~~~~~~~~~~~~~~~~~-~~~~e~~~in~Sl~~L~~~i~~l 187 (279)
... -...+|+|+.......+ .+++|+..||+||++|++||.+|
T Consensus 195 ~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL 274 (360)
T 1ry6_A 195 VLLRKIGVNSQNDESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAM 274 (360)
T ss_dssp HHHHHHCTTCCTTGGGGSEEEEEEEEEETTTTEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccCCCccceEEEEEEEEeccCCcceeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 000 01114555544444333 56789999999999999999999
Q ss_pred HhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccC
Q psy37 188 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNE 256 (279)
Q Consensus 188 ~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~ 256 (279)
+. +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++|+|.|+.+.
T Consensus 275 ~~----~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~~~ 339 (360)
T 1ry6_A 275 DS----DKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGK 339 (360)
T ss_dssp TT----STTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---------
T ss_pred hc----CCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccCcccCC
Confidence 84 678999999999999999999999999999999999999999999999999999999776654
No 20
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=3.2e-57 Score=398.26 Aligned_cols=216 Identities=31% Similarity=0.482 Sum_probs=169.0
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCCC
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPS 98 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~~ 98 (279)
.|.||+||+++++|++||+.+ .|+|+.+++|+|+||||||||||||||||+|+ ++|++|+++++| |..+....+.
T Consensus 54 ~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~l-F~~~~~~~~~- 128 (349)
T 3t0q_A 54 NFQFDMIFEPSHTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHI-FKWTANLKER- 128 (349)
T ss_dssp EEEESEEECTTCCHHHHHHHH-HHHHHGGGTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHH-HHHHHHHGGG-
T ss_pred eeecCEEECCCccHHHHHHHH-HHHHHHHHCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHH-HHHHHHhhhc-
Confidence 589999999999999999986 59999999999999999999999999999996 469999999999 9876532211
Q ss_pred CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC---------------------ceEEEecc------------
Q psy37 99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG---------------------KTFTMMGS------------ 145 (279)
Q Consensus 99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~---------------------~~~~~~g~------------ 145 (279)
...+.+..+++|+|+|.++|||.+... ....+.|.
T Consensus 129 ------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~ 196 (349)
T 3t0q_A 129 ------------GWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVD 196 (349)
T ss_dssp ------------TEEEEEEEEEEEEETTEEEETTC---------------CCCEEEETTTTEEEETTCCCEECCCHHHHH
T ss_pred ------------CceeEEEEEEEEEEcchhhccccccccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHH
Confidence 112556669999999999999964321 01111111
Q ss_pred -------ccc---------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHH
Q psy37 146 -------KAR---------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVT 179 (279)
Q Consensus 146 -------~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~ 179 (279)
..| ...+|+|++......|++++|+..||+||++
T Consensus 197 ~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~a 276 (349)
T 3t0q_A 197 TILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSC 276 (349)
T ss_dssp HHHHHC------------CTGGGSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCCCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHH
Confidence 111 1115666666666788999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcc
Q psy37 180 LGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKP 252 (279)
Q Consensus 180 L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~ 252 (279)
|++||.+|++.+ .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|++.++..+
T Consensus 277 Lg~vI~aL~~~~-~~~~hiPyRdSkLT~lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 277 LGDVIYALNTPD-AGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp HHHHHHHHHSTT-GGGSCCCGGGSHHHHHHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhccc-CCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999999998622 223599999999999999999999999999999999999999999999999999998765
No 21
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2e-57 Score=401.64 Aligned_cols=211 Identities=37% Similarity=0.564 Sum_probs=156.1
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC----CCCCCCCccccceecccccc
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA----TTDNSPDAHKDFTFDHSYWS 94 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~----~~G~~~~~~~~l~f~~~~~~ 94 (279)
.|.||+||+++++|++||+.+. |+|+.+++|+|+||||||||||||||||+|+.. .+|++|+++++| |..+...
T Consensus 84 ~F~FD~Vf~~~~~Q~~Vy~~v~-~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~l-F~~i~~~ 161 (376)
T 2rep_A 84 DFSFDRVFPPGSGQDEVFEEIA-MLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHL-FSVAQEL 161 (376)
T ss_dssp EEECSEEECTTCCHHHHHHHHH-HHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHH-HHHHHHG
T ss_pred eeeecEEcCCcccchhhhhhHH-HHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHH-HHHHHHh
Confidence 4899999999999999999965 899999999999999999999999999999754 689999999999 9876532
Q ss_pred cCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC----------------ceEEEeccccc----------
Q psy37 95 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG----------------KTFTMMGSKAR---------- 148 (279)
Q Consensus 95 ~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~----------------~~~~~~g~~~~---------- 148 (279)
... ...+.+..+++|+|+|.|+|||.+... ....+.|....
T Consensus 162 ~~~-------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ 228 (376)
T 2rep_A 162 SGQ-------------GWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDA 228 (376)
T ss_dssp GGG-------------TEEEEEEEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHH
T ss_pred hcC-------------CeEEEEEEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHH
Confidence 111 122556669999999999999976411 01111111110
Q ss_pred ------------------------------------------------cccCccccchhhhhhh----hhhhhhhHHHHH
Q psy37 149 ------------------------------------------------NFGEGKDCVCSIVEAG----DRLKEGAHINKS 176 (279)
Q Consensus 149 ------------------------------------------------~~~~~~~~~~~~~~~~----~~~~e~~~in~S 176 (279)
...+|+|++......| ++++|+..||+|
T Consensus 229 ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkS 308 (376)
T 2rep_A 229 LLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSS 308 (376)
T ss_dssp HHHHHHHHHHHCC-----CGGGSEEEEEEEEEEEESSSCCEEEEEEEEEECCCCC------------------------C
T ss_pred HHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHH
Confidence 1114555555555566 899999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37 177 LVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248 (279)
Q Consensus 177 l~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i 248 (279)
|++|++||.+|++ +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|++++
T Consensus 309 L~aLg~vI~aL~~----~~~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 309 LSTLGLVIMALSN----KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHHHHHHHHHHT----TCSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhc----CCCccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999995 6789999999999999999999999999999999999999999999999999864
No 22
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-57 Score=403.28 Aligned_cols=217 Identities=34% Similarity=0.500 Sum_probs=173.7
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCCC
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPS 98 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~~ 98 (279)
.|.||+||+++++|++||+.+. |+|+.+++|+|+||||||||||||||||+|+ ++|++|+++++| |..+......
T Consensus 109 ~F~FD~VF~~~~~Q~~Vf~~v~-~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~l-F~~i~~~~~~- 183 (403)
T 4etp_A 109 EFKFDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHI-FNWINKLKTK- 183 (403)
T ss_dssp EEEESEEECTTCCHHHHHHHHH-HHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHH-HHHHHHHHTT-
T ss_pred EEEcCEEECCCCchHHHHHHHH-HHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHH-HHHHHhhhcc-
Confidence 5899999999999999999865 8999999999999999999999999999996 469999999999 9876532221
Q ss_pred CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC-------------------ceEEEeccc-------------
Q psy37 99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG-------------------KTFTMMGSK------------- 146 (279)
Q Consensus 99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~-------------------~~~~~~g~~------------- 146 (279)
...+.+..+++|+|++.++|||.+... ....+.|..
T Consensus 184 ------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~l 251 (403)
T 4etp_A 184 ------------GWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEII 251 (403)
T ss_dssp ------------TEEEEEEEEEEEEETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHH
T ss_pred ------------CceEEEEEEEEEEecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHH
Confidence 112556669999999999999975431 111122111
Q ss_pred ------cc---------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHH
Q psy37 147 ------AR---------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLG 181 (279)
Q Consensus 147 ------~~---------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~ 181 (279)
.| ...+|+|++......|.+++|+..||+||++|+
T Consensus 252 l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg 331 (403)
T 4etp_A 252 LKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALG 331 (403)
T ss_dssp HHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCcccCCcccEEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHH
Confidence 11 111466666556678899999999999999999
Q ss_pred HHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccc
Q psy37 182 SVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPT 253 (279)
Q Consensus 182 ~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~ 253 (279)
+||.+|++.+ .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|++.++..|+
T Consensus 332 ~vI~aL~~~~-~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 332 DVIHALGQPD-STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp HHHHHHTSSC-TTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhccc-CCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 9999998522 2346999999999999999999999999999999999999999999999999999998875
No 23
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=3.8e-57 Score=397.91 Aligned_cols=210 Identities=34% Similarity=0.454 Sum_probs=159.3
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCC---CCCCCCccccceeccccccc
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKAT---TDNSPDAHKDFTFDHSYWSF 95 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~---~G~~~~~~~~l~f~~~~~~~ 95 (279)
.|.||+|| ++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..+ +|++|+++++| |..+....
T Consensus 72 ~F~fD~Vf-~~~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~l-F~~i~~~~ 149 (358)
T 2nr8_A 72 SFKLDGVL-HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQV-FRMIEERP 149 (358)
T ss_dssp EEECSEEE-ESCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHH-HHHHHTCT
T ss_pred EEECCeec-CCcCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHH-HHHHhhcC
Confidence 37899999 489999999999999999999999999999999999999999998765 89999999999 98875432
Q ss_pred CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC-----c---------eEEEeccccc-------------
Q psy37 96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG-----K---------TFTMMGSKAR------------- 148 (279)
Q Consensus 96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~-----~---------~~~~~g~~~~------------- 148 (279)
.. .+.+..+++|+|+|.++|||.+... . ...+.|....
T Consensus 150 ~~---------------~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~ 214 (358)
T 2nr8_A 150 TH---------------AITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLF 214 (358)
T ss_dssp TS---------------CEEEEEEEEEEETTEEEETTSSSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHH
T ss_pred Cc---------------eEEEEEEEEEEeCCeeeECcCCccccCccCCceEEEECCCceEecCCEEEEcCCHHHHHHHHH
Confidence 21 1445569999999999999975221 0 1111111110
Q ss_pred -----------------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHH
Q psy37 149 -----------------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLG 181 (279)
Q Consensus 149 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~ 181 (279)
...+|+|++......|.+++|+..||+||++|+
T Consensus 215 ~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg 294 (358)
T 2nr8_A 215 EGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLE 294 (358)
T ss_dssp HHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEEEEEEEEECCCCC----------------CCSTHHHHHH
T ss_pred HHHhccccccccCCCCCCcCeEEEEEEEEEEeccCCCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHH
Confidence 112566666666678899999999999999999
Q ss_pred HHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37 182 SVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248 (279)
Q Consensus 182 ~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i 248 (279)
+||.+|++ .+..|||||+||||+||+|+|||+++|+||+||+|...+++||++||+||+|+|.|
T Consensus 295 ~vI~aL~~---~~~~hiPyRdSkLT~LLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 295 QAIIALGD---QKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp HHHHHHHC--------CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHHHHHh---CCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999985 34579999999999999999999999999999999999999999999999999976
No 24
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=6.7e-57 Score=395.80 Aligned_cols=212 Identities=39% Similarity=0.537 Sum_probs=163.0
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCC------CCCCCCCCCccccceeccc
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS------KATTDNSPDAHKDFTFDHS 91 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~------~~~~G~~~~~~~~l~f~~~ 91 (279)
..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+ .+++|++|+++++| |..+
T Consensus 50 ~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~l-F~~i 128 (344)
T 4a14_A 50 RHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEA-FKLI 128 (344)
T ss_dssp EEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHH-HHHH
T ss_pred ceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHH-HHhc
Confidence 3589999999999999999999999999999999999999999999999999997 46799999999999 9877
Q ss_pred ccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc-----------eEEEeccc--------------
Q psy37 92 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK-----------TFTMMGSK-------------- 146 (279)
Q Consensus 92 ~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~-----------~~~~~g~~-------------- 146 (279)
..... ..+.+..+++|+|+|.++|||...... ...+.|..
T Consensus 129 ~~~~~---------------~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll 193 (344)
T 4a14_A 129 DENDL---------------LDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLL 193 (344)
T ss_dssp HHCTT---------------SEEEEEEEEEEEETTEEEETTSSCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHH
T ss_pred ccccc---------------eeeEEEEehhhhhHHHHHHHHHhccccccceeeeccCCCEEEEeeeeccccCHHHHHHHH
Confidence 53211 124456699999999999999633210 01111110
Q ss_pred ----------------------------------------------------cccccCccccchhhhhhhhhhhhhhHHH
Q psy37 147 ----------------------------------------------------ARNFGEGKDCVCSIVEAGDRLKEGAHIN 174 (279)
Q Consensus 147 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~e~~~in 174 (279)
.-...+|+|++......|.+++|+..||
T Consensus 194 ~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN 273 (344)
T 4a14_A 194 EMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQIN 273 (344)
T ss_dssp HHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEEEEEEEEEECCCCCCC--------------CCC
T ss_pred HhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccceeeeeeeEEecccchhhcccCCchhhhhhheeec
Confidence 0112256666666667889999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhc
Q psy37 175 KSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 246 (279)
Q Consensus 175 ~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~ 246 (279)
+||++|++||.+|++.+ .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|||
T Consensus 274 ~SL~aLg~vI~aL~~~~-~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 274 SSLLALGNVISALGDPQ-RRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp SHHHHHHHHHHHHTCTT-TTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred hhHHhhhhHHHhcCCcc-ccCCCCCcchhhHHHHhHhhcCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999998632 245699999999999999999999999999999999999999999999999986
No 25
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=1.1e-56 Score=397.11 Aligned_cols=216 Identities=36% Similarity=0.467 Sum_probs=162.2
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCC------CCCCCCCCCccccceeccc
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS------KATTDNSPDAHKDFTFDHS 91 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~------~~~~G~~~~~~~~l~f~~~ 91 (279)
..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+ ...+|++|++++++ |..+
T Consensus 101 ~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~l-F~~~ 179 (387)
T 2heh_A 101 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDV-FLLK 179 (387)
T ss_dssp EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHH-HHHH
T ss_pred cEEeeeEEEecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHH-HHHh
Confidence 4589999999999999999999999999999999999999999999999999996 34689999999999 8776
Q ss_pred ccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc--------eEEEeccccc---------------
Q psy37 92 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK--------TFTMMGSKAR--------------- 148 (279)
Q Consensus 92 ~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~--------~~~~~g~~~~--------------- 148 (279)
.... .....+.+..+++|+|+|.++|||.+...- ...+.|....
T Consensus 180 ~~~~-------------~~~~~~~V~vS~~EIYnE~v~DLL~~~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G 246 (387)
T 2heh_A 180 NQPC-------------YRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMG 246 (387)
T ss_dssp TSHH-------------HHTTTCEEEEEEEEEETTEEEETTTTTEECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHH
T ss_pred hccc-------------ccCceEEEEEEEEEecCCeEEECCCCCccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHH
Confidence 4211 122235566699999999999999743211 1111111111
Q ss_pred --------------------------------------cccCccccchhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q psy37 149 --------------------------------------NFGEGKDCVCSIV-EAGDRLKEGAHINKSLVTLGSVISSLAE 189 (279)
Q Consensus 149 --------------------------------------~~~~~~~~~~~~~-~~~~~~~e~~~in~Sl~~L~~~i~~l~~ 189 (279)
...+|+|+..... ..+.+++|+..||+||++|++||.+|++
T Consensus 247 ~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~ 326 (387)
T 2heh_A 247 SACRTSGQTFANSNSSRSHACFQIILRAKGRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ 326 (387)
T ss_dssp HHHC---------CGGGSEEEEEEEEESSSSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHT
T ss_pred HhhCCcccCcCcCCcccceEEEEEEEEECCeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhc
Confidence 1114455443332 2346677999999999999999999984
Q ss_pred hhCCCCCcccccchhHHHHhHhh-cCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCc
Q psy37 190 LSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINK 251 (279)
Q Consensus 190 ~~~~~~~~ipyr~SkLT~lL~~~-l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~ 251 (279)
+..|||||+||||+||+|+ |||+++|+||+||||...+++||++||+||+|+++|++.
T Consensus 327 ----~~~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 327 ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp ----TCSCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred ----CCCCCCccccHHHHHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 6789999999999999999 699999999999999999999999999999999999875
No 26
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=8.9e-57 Score=401.96 Aligned_cols=219 Identities=31% Similarity=0.477 Sum_probs=168.7
Q ss_pred cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccC
Q psy37 17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFD 96 (279)
Q Consensus 17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~ 96 (279)
...|.||+||+++++|++||+.+ .|+|+.+++|+|+||||||||||||||||+|+++++|++|+++++| |..+.....
T Consensus 105 ~~~F~FD~VF~~~~~Q~~Vf~~v-~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~l-F~~i~~~~~ 182 (412)
T 3u06_A 105 QQIFSFDQVFHPLSSQSDIFEMV-SPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLL-FDSIRGYRN 182 (412)
T ss_dssp CCEEECSEEECTTCCHHHHHTTT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHH-HHHHHHHGG
T ss_pred ceEEeeCeEcCCCCCHHHHHHHH-HHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHH-HHhhhhhcc
Confidence 34689999999999999999864 6999999999999999999999999999999999999999999999 987643211
Q ss_pred CCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce-----------EEEeccccccc---------------
Q psy37 97 PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT-----------FTMMGSKARNF--------------- 150 (279)
Q Consensus 97 ~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~-----------~~~~g~~~~~~--------------- 150 (279)
. ...+.+..+++|+|++.++|||.+..... ..+.|.....+
T Consensus 183 ~-------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~ 249 (412)
T 3u06_A 183 L-------------GWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKM 249 (412)
T ss_dssp G-------------TEEEEEEEEEEEEETTEEEETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHH
T ss_pred c-------------CceEEEEEEEEEEeCCeeEEcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHh
Confidence 1 12255666999999999999996543211 11222111111
Q ss_pred ------------cCccccchhhh---------------------------hhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q psy37 151 ------------GEGKDCVCSIV---------------------------EAGDRLKEGAHINKSLVTLGSVISSLAELS 191 (279)
Q Consensus 151 ------------~~~~~~~~~~~---------------------------~~~~~~~e~~~in~Sl~~L~~~i~~l~~~~ 191 (279)
++.+|++..+. ..+.+++|+..||+||++|++||.+|++
T Consensus 250 ~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~~~rl~E~~~INkSL~aLg~vI~aL~~-- 327 (412)
T 3u06_A 250 NRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILALLQ-- 327 (412)
T ss_dssp HCC-----CHHHHTTCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCC----------CTTTHHHHHHHHHHHHHHT--
T ss_pred cccccccCCCCCCcCceEEEEEEEEEEeCCCCCEEEEEEEEEECCCCCcCCccchhHhHHHHhHHHHHHHHHHHHHhc--
Confidence 12333322211 3467899999999999999999999994
Q ss_pred CCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccc
Q psy37 192 TKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTV 254 (279)
Q Consensus 192 ~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~ 254 (279)
+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+++++++..+..
T Consensus 328 --~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~ 388 (412)
T 3u06_A 328 --KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAK 388 (412)
T ss_dssp --TCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC----
T ss_pred --cCCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhccccccc
Confidence 6789999999999999999999999999999999999999999999999999999865533
No 27
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=1.2e-56 Score=399.07 Aligned_cols=218 Identities=36% Similarity=0.461 Sum_probs=163.5
Q ss_pred ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC------CCCCCCCCccccceeccc
Q psy37 18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK------ATTDNSPDAHKDFTFDHS 91 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~------~~~G~~~~~~~~l~f~~~ 91 (279)
..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+. ..+|++|+++++| |..+
T Consensus 121 ~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~l-F~~~ 199 (410)
T 1v8k_A 121 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDV-FLLK 199 (410)
T ss_dssp EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHH-HHHH
T ss_pred eEEeeeEEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHH-HHHH
Confidence 45899999999999999999999999999999999999999999999999999963 4589999999999 8766
Q ss_pred ccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC--------ceEEEecccc----------------
Q psy37 92 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG--------KTFTMMGSKA---------------- 147 (279)
Q Consensus 92 ~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~--------~~~~~~g~~~---------------- 147 (279)
.... .....+.+..+++|+|++.|+|||.+... ....+.|...
T Consensus 200 ~~~~-------------~~~~~~~V~vS~lEIYnE~i~DLL~~~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G 266 (410)
T 1v8k_A 200 NQPR-------------YRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMG 266 (410)
T ss_dssp TSHH-------------HHTTCCEEEEEEEEEETTEEEETTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHH
T ss_pred hhhc-------------ccCccEEEEEEEEEeeCCEEEECCCCCCCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHH
Confidence 4211 11223556669999999999999974321 1111111111
Q ss_pred ---c----------------------------------cccCccccchhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q psy37 148 ---R----------------------------------NFGEGKDCVCSIV-EAGDRLKEGAHINKSLVTLGSVISSLAE 189 (279)
Q Consensus 148 ---~----------------------------------~~~~~~~~~~~~~-~~~~~~~e~~~in~Sl~~L~~~i~~l~~ 189 (279)
| ...+|+|+..... ..+.++.|+..||+||++|++||.+|++
T Consensus 267 ~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~ 346 (410)
T 1v8k_A 267 SACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ 346 (410)
T ss_dssp HHTCC--------CCCSSEEEEEEEEESSSSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhCCcccccCCCCCCCceEEEEEEEEeCCcceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhc
Confidence 1 1114455443332 2456677999999999999999999984
Q ss_pred hhCCCCCcccccchhHHHHhHhh-cCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccc
Q psy37 190 LSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPT 253 (279)
Q Consensus 190 ~~~~~~~~ipyr~SkLT~lL~~~-l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~ 253 (279)
+..|||||+||||+||+|+ |||+++|+||+||||+..+++||++||+||++++.|...|-
T Consensus 347 ----~~~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 347 ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp ----------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred ----CCCCCCcccchhHHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 6789999999999999999 69999999999999999999999999999999999988773
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=2.6e-53 Score=408.14 Aligned_cols=214 Identities=37% Similarity=0.516 Sum_probs=167.7
Q ss_pred ccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceeccccccc
Q psy37 16 DHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSF 95 (279)
Q Consensus 16 d~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~ 95 (279)
....|.||+||+++++|++||+.+ .|+|+.+++|+|+||||||||||||||||.|+ ++||+||++++| |..+....
T Consensus 428 ~~~~f~fd~vf~~~~~q~~v~~~~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~l-f~~~~~~~ 503 (715)
T 4h1g_A 428 SNLRFLFDKIFEREQSNDLVFEEL-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKI-FNDIEELK 503 (715)
T ss_dssp EEEEEECSEEECSSCCHHHHGGGT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHH-HHHHHHHG
T ss_pred CCeEEEeceEeCCCCCHHHHHHHH-HHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHH-HHHHHHhh
Confidence 334589999999999999999876 49999999999999999999999999999994 589999999999 98765322
Q ss_pred CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc-------------eEEEeccc----------------
Q psy37 96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK-------------TFTMMGSK---------------- 146 (279)
Q Consensus 96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~-------------~~~~~g~~---------------- 146 (279)
+. ...+.+..|++|+|++.++|||.+.... ...+.|..
T Consensus 504 ~~-------------~~~~~v~~s~~Eiyne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~ 570 (715)
T 4h1g_A 504 EK-------------GWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQ 570 (715)
T ss_dssp GG-------------TEEEEEEEEEEEEETTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHH
T ss_pred cC-------------CceEEEEEEEEEEECCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHH
Confidence 11 1124566699999999999999743210 11111111
Q ss_pred ---cc---------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHH
Q psy37 147 ---AR---------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVI 184 (279)
Q Consensus 147 ---~~---------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i 184 (279)
.| ...+|+|++......|.+++|+..||+||++|++||
T Consensus 571 g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi 650 (715)
T 4h1g_A 571 ANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVI 650 (715)
T ss_dssp HHCC----------CGGGSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcccccccCccccccEEEEEEEEEEecCCCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHH
Confidence 11 111456665555677899999999999999999999
Q ss_pred HHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhcccc
Q psy37 185 SSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNII 249 (279)
Q Consensus 185 ~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~ 249 (279)
.+|+. ++..|||||+||||+||+|+|||+|+|+||+||||+..+++||++||+||+|+|+|+
T Consensus 651 ~al~~---~~~~~vpyR~SkLT~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 651 HSLNL---KDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp HHHHH---CSCCCCCGGGCHHHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred HHHhh---cCCCcCCCccCHHHHHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 99986 566899999999999999999999999999999999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.97 E-value=4.4e-32 Score=193.60 Aligned_cols=98 Identities=44% Similarity=0.596 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhcccc
Q psy37 170 GAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNII 249 (279)
Q Consensus 170 ~~~in~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~ 249 (279)
+..||+||++|++||.+|++ ....||||||||||++|+|+|||+++|+||+||+|+..+++||++||+||+++++|+
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~---~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~ 77 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAE---GTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIK 77 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHH---TCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCE
T ss_pred CCcchHHHHHHHHHHHHHHh---cCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhcc
Confidence 35799999999999999986 346899999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCccHH-HHHHHHHHH
Q psy37 250 NKPTVNEDPNTR-IIRELHDEI 270 (279)
Q Consensus 250 ~~~~~~~~~~~~-~~~~l~~~~ 270 (279)
+.|.+|.+.... ++++|++|+
T Consensus 78 ~~~~~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 78 NTVSVNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp EEECCEEECCHHHHHHHHHHHH
T ss_pred CcceeccCCCHHHHHHHHHHhh
Confidence 999999877664 556777765
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=1.2e-29 Score=187.45 Aligned_cols=85 Identities=49% Similarity=0.682 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccc
Q psy37 174 NKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPT 253 (279)
Q Consensus 174 n~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~ 253 (279)
|+||++|++||.+|++ +...|||||+||||++|+|+|||+++|+||+||+|+..+++||++||+||+++++|++.|.
T Consensus 1 N~SL~~Lg~vi~aL~~---~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~ 77 (117)
T 3kin_B 1 NKSLSALGNVISALAE---GTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 77 (117)
T ss_dssp CCHHHHHHHHHHHHHH---SCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCHHHHHHHHHHHHh---CCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCce
Confidence 7899999999999996 4457999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccHH
Q psy37 254 VNEDPNTR 261 (279)
Q Consensus 254 ~~~~~~~~ 261 (279)
+|.+....
T Consensus 78 ~n~~~~~~ 85 (117)
T 3kin_B 78 VNLELTAE 85 (117)
T ss_dssp CCBCCCHH
T ss_pred ecCcCCHH
Confidence 99877664
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=5e-16 Score=129.20 Aligned_cols=192 Identities=12% Similarity=0.117 Sum_probs=115.8
Q ss_pred ceeecCCCCCCCCCHH--HHHHHhHHHHHHHhcc-ccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccc
Q psy37 18 SYWSFDPSSPQFASQE--QVFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWS 94 (279)
Q Consensus 18 ~~f~fd~vf~~~~~q~--~vy~~~~~~lv~~v~~-G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~ 94 (279)
..|.||+||++++.|+ +||+++. ++|+.+++ |+|+||||||||||||| |+++..+ |.....
T Consensus 57 k~f~FDRVf~p~s~Qe~~~vf~E~~-~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~-f~~~~~- 120 (298)
T 2o0a_A 57 HVYKFNRVIPHLKVSEDKFFTQEYS-VYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKF-LAEKDT- 120 (298)
T ss_dssp CEEECSEEEETTTSCHHHHHHHTTH-HHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHH-HHSTTS-
T ss_pred ceEEeeeEECccccccHHHHHHHHH-HHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHH-HHHhhh-
Confidence 4689999999999999 9999965 99999999 99999999999999999 8888888 655421
Q ss_pred cCCCCcccccHHHHHhhhchhhHhhhhhcc-ceeeeeccccC-CCce----------EEEeccccccccCccccchhhh-
Q psy37 95 FDPSSPQFASQEQVFNDLGMDVVDAAFEGY-NACVFAYGQTG-SGKT----------FTMMGSKARNFGEGKDCVCSIV- 161 (279)
Q Consensus 95 ~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~-~~~v~dl~~~~-~~~~----------~~~~g~~~~~~~~~~~~~~~~~- 161 (279)
++. ..+.+..+++++| ++.++|||... .+.. ..+.+.....+..|.+.+....
T Consensus 121 -------------~~~-~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~ 186 (298)
T 2o0a_A 121 -------------IYQ-KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFS 186 (298)
T ss_dssp -------------HHH-HHEEEEEEEEEEECC-CEEETTSCCC------CEEEECSSCEEEESCCEEESSGGGGSCTTTT
T ss_pred -------------hcc-cceEEEEEEEEEecCCchHHhcCCCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHhh
Confidence 000 1244555999999 99999999622 2211 1222333333334222211111
Q ss_pred -------h-hhh------------hhhhh---hHH-------H--HHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHh
Q psy37 162 -------E-AGD------------RLKEG---AHI-------N--KSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLL 209 (279)
Q Consensus 162 -------~-~~~------------~~~e~---~~i-------n--~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL 209 (279)
. .|. .+++- ..+ + ++...|.+ ++. .+ .+-.|+++-+|
T Consensus 187 ~~~~~~~~~~gi~i~k~~~~~~~~~~~~~~~~~~~d~yf~e~~~~~~~~~l~~---~~~----~~----~~~~spi~~il 255 (298)
T 2o0a_A 187 CDEHPNLPHSGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLKSIEQFDK---SIF----KK----ESCETPIALVL 255 (298)
T ss_dssp CC-------CEEEEEEEEEEESCC-------CCCEEEEEEEECSHHHHHHHHH---HHH----TC-----CCCSHHHHHH
T ss_pred cccccccCCCCceEEEEEEecCcccccccCCCCceEEEEEEeCCHHHHHHHHh---hcc----cc----cccCCcHHHHH
Confidence 0 000 00110 000 0 11222222 332 11 35568888888
Q ss_pred HhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccccc
Q psy37 210 KDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 255 (279)
Q Consensus 210 ~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~ 255 (279)
+-.| -..+.++++++..+. +.-..|..++++.+++|..+.+
T Consensus 256 ~~ll-~~tks~~~~~l~~~~----~~~~lL~~s~~i~~~~~~~~~~ 296 (298)
T 2o0a_A 256 KKLI-SDTKSFFLLNLNDSK----NVNKLLTISEEVQTQLCKRKKK 296 (298)
T ss_dssp HHHH-HHSBCEEEEEECCGG----GHHHHHHHHHHHHHHTC-----
T ss_pred HHHH-hcCcceEEEEecCCC----chhHHHHHHHHhhcccCccccc
Confidence 8877 457888999998543 2233689999999988866543
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.38 E-value=0.001 Score=52.07 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=36.6
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
++||.....+..|+++++.+. .+++++-......++-+|++|+|||+.+.
T Consensus 7 ~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 7 ANLDTYHPKNVSQNRALLTIR-VFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp CCSSSCCCCSHHHHHHHHHHH-HHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CccccccCCCHHHHHHHHHHH-HHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 456776666667888876664 67776654445678889999999999873
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.36 E-value=0.0084 Score=47.58 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=33.7
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhcccc-CeeEeeccCcCCCceeEec
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGY-NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~-n~~v~~yG~tgSGKT~Tl~ 70 (279)
+.||.+...+..+.++++.+. ..+...-.+. +..|+.+|++|+|||+.+.
T Consensus 22 ~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 22 ASLSDVDLNDDGRIKAIRFAE-RFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCTTSSCCSSHHHHHHHHHHH-HHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred CCHhhccCCChhHHHHHHHHH-HHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 467766655556677777543 5555543332 2688999999999999863
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.20 E-value=0.006 Score=52.28 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=33.4
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
+.||.+...+..+..++.. +...++..-.+....|+.||++|+||||.+.+
T Consensus 121 ~tfd~f~~~~~~~~~~~~~-~~~~i~~~~~~~~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSA-ILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHH-HHHHHHHCSCSSCCEEEEECSTTSSHHHHHHH
T ss_pred CCHhhCcCCChHHHHHHHH-HHHHHHhccccCCceEEEECCCCCCHHHHHHH
Confidence 3555544333355666663 33566665444457789999999999998743
No 35
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=93.61 E-value=0.025 Score=50.87 Aligned_cols=63 Identities=54% Similarity=1.118 Sum_probs=53.6
Q ss_pred ccceecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 84 ~~l~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
+.+.|+.+.|.........+++.++|+..+.+++.+++++||.+|+.+++.++|++++|.|..
T Consensus 96 ~~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~ 158 (443)
T 2owm_A 96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTP 158 (443)
T ss_dssp EEEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCT
T ss_pred ceEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCC
Confidence 345577777766555556788999999999999999999999999999999999999999853
No 36
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.81 E-value=0.079 Score=43.83 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=32.2
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHH-----HHHhccccCeeEeeccCcCCCceeEec
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDV-----VDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~l-----v~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
+.|+.+.+.+...+.+.+.+. .+ ...+-......|+-||++|+|||+.+.
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 567888888877777755332 21 111111234459999999999999863
No 37
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.56 E-value=0.039 Score=42.45 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=22.3
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.+++.+..+....|+.+|++|+|||+.+.
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 44445555667789999999999999863
No 38
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.26 E-value=0.072 Score=40.99 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=21.9
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+++.+..+....++.+|++|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 3444555566778999999999999987
No 39
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.70 E-value=0.057 Score=45.72 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=26.7
Q ss_pred HHHHHHHhHHHHHHHhcc--ccC--eeEeeccCcCCCceeEe
Q psy37 32 QEQVFNDLGMDVVDAAFE--GYN--ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 32 q~~vy~~~~~~lv~~v~~--G~n--~~v~~yG~tgSGKT~Tl 69 (279)
-..+.+.++..++.+.+. |.. ..|+.||++|+|||+..
T Consensus 12 ~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 12 APAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 345666666677777653 322 36888999999999976
No 40
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=91.66 E-value=0.067 Score=46.87 Aligned_cols=62 Identities=56% Similarity=1.146 Sum_probs=50.3
Q ss_pred cceeccccccc-CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 85 DFTFDHSYWSF-DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 85 ~l~f~~~~~~~-~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
.+.|+...+.. .......+++.++|+..+.+++.+++++||.+|+.+++.++|++++|.|..
T Consensus 49 ~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~ 111 (366)
T 2zfi_A 49 SFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ 111 (366)
T ss_dssp EEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCS
T ss_pred EEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCC
Confidence 34466665544 233344578999999999999999999999999999999999999999864
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.49 E-value=0.085 Score=45.07 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=28.5
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
|.||.+.. ...+...+.. +..+++.-- +....++-||++|+|||+.+.
T Consensus 8 ~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 8 YTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 46666542 2344445444 333443311 134578999999999999874
No 42
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.31 E-value=0.14 Score=41.09 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=28.1
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhc-cccCeeEeeccCcCCCceeEec
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAF-EGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~-~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
+.||.+... ..++++++.+ ..+. .+....++.||++|+|||+.+.
T Consensus 25 ~~~~~~~~~-~~~~~~~~~l-----~~~~~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGAL-----KSAASGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHHHH-----HHHHHTCSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCC-CCCHHHHHHH-----HHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 567776652 2334444432 2333 3356789999999999999863
No 43
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.31 E-value=0.061 Score=44.53 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=22.5
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
|+||.+.+.+..-..+.+ .+..+.. .+..|+-+|++|+|||+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~-----~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLE-----QVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp -------CCCHHHHHHHH-----HHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred cccccceeCCHHHHHHHH-----HHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 456666654433333322 2333332 3467889999999999876
No 44
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=91.17 E-value=0.083 Score=46.07 Aligned_cols=62 Identities=55% Similarity=1.107 Sum_probs=50.8
Q ss_pred cceecccccccCCCC-cccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 85 DFTFDHSYWSFDPSS-PQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 85 ~l~f~~~~~~~~~~~-~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
.+.|+...|..+... ...+.+.++|+..+.+++.+++++||.+|+.+++.++|++++|.|..
T Consensus 52 ~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~ 114 (354)
T 3gbj_A 52 VFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA 114 (354)
T ss_dssp EEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCS
T ss_pred EEEeeEEeccCccccccccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCC
Confidence 344677666544332 45678999999999999999999999999999999999999998854
No 45
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.12 E-value=0.066 Score=45.99 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=19.8
Q ss_pred ccccCeeEeeccCcCCCceeEe
Q psy37 48 FEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 48 ~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
-.|...+++.||++|+|||.++
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHH
Confidence 4688889999999999999987
No 46
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.59 E-value=0.074 Score=43.68 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.9
Q ss_pred eEeeccCcCCCceeEec
Q psy37 54 CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~ 70 (279)
.++.||++|+|||+.+-
T Consensus 51 g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 38999999999999873
No 47
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.49 E-value=0.069 Score=40.34 Aligned_cols=20 Identities=20% Similarity=0.665 Sum_probs=16.0
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
...++.+|++|+|||+.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 34677799999999998743
No 48
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.47 E-value=0.11 Score=44.02 Aligned_cols=50 Identities=16% Similarity=0.115 Sum_probs=30.4
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHH-----HhccccCeeEeeccCcCCCceeEe
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVD-----AAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~-----~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
..||.+.+.+.--+++.+.+..|+.. ..--.....|+-||++|+|||+.+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 45666666555555555555444221 111123457999999999999875
No 49
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.37 E-value=0.11 Score=43.37 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=30.8
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHH-----HhccccCeeEeeccCcCCCceeEec
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVD-----AAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~-----~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
+.||.+.+.+..-+++.+.+..++.. ..--.....|+-||++|+|||+.+.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 56677766555555554444433221 1111344569999999999999763
No 50
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=89.90 E-value=0.13 Score=44.62 Aligned_cols=46 Identities=35% Similarity=0.648 Sum_probs=41.6
Q ss_pred ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
..+++.++|+..+.+++.+++++||.+|+.+++.++|++++|.|..
T Consensus 71 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~ 116 (344)
T 3dc4_A 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTP 116 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSC
T ss_pred CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCC
Confidence 4467899999999999999999999999999999999999997643
No 51
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=89.88 E-value=0.11 Score=45.38 Aligned_cols=44 Identities=52% Similarity=0.943 Sum_probs=41.0
Q ss_pred ccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 103 ASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 103 ~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
+++.++|+..+.+++.+++++||.+|+.+++.++|++++|.|..
T Consensus 83 ~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~ 126 (359)
T 3nwn_A 83 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGAT 126 (359)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCS
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCcc
Confidence 46889999999999999999999999999999999999999864
No 52
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.82 E-value=0.18 Score=41.80 Aligned_cols=21 Identities=29% Similarity=0.164 Sum_probs=18.5
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566778999999999999976
No 53
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=89.66 E-value=0.092 Score=45.20 Aligned_cols=45 Identities=56% Similarity=0.822 Sum_probs=41.6
Q ss_pred cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
.+++.++|+....+++.+++++||.+++.+++.++|+++++.|..
T Consensus 55 ~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~ 99 (325)
T 1bg2_A 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKL 99 (325)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBST
T ss_pred CCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccC
Confidence 467899999999999999999999999999999999999999854
No 54
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=89.42 E-value=0.13 Score=44.20 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=26.9
Q ss_pred eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|.|+.+.+. +++.+. +...++.+....|+-||++|+|||+..
T Consensus 20 ~~~f~~i~G~----~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 20 VFPFSAIVGQ----EDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCGGGSCSC----HHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCchhccCh----HHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 3566666643 334332 222334444556999999999999876
No 55
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=89.30 E-value=0.1 Score=45.68 Aligned_cols=46 Identities=50% Similarity=0.755 Sum_probs=41.9
Q ss_pred ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
..+++.++|+....+++.+++++||.+|+.+++.++|+++++.|..
T Consensus 61 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~ 106 (365)
T 2y65_A 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVI 106 (365)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBST
T ss_pred CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCC
Confidence 3467899999999999999999999999999999999999999854
No 56
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=88.94 E-value=0.1 Score=45.35 Aligned_cols=45 Identities=47% Similarity=0.910 Sum_probs=41.1
Q ss_pred cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
..++.++|+....+++.+++++||.+|+.+++.++|++++|.|..
T Consensus 55 ~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~ 99 (349)
T 1t5c_A 55 NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSE 99 (349)
T ss_dssp TSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCS
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEecCC
Confidence 356889999999999999999999999999999999999998853
No 57
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=88.82 E-value=0.091 Score=45.83 Aligned_cols=47 Identities=40% Similarity=0.710 Sum_probs=42.5
Q ss_pred cccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 100 PQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 100 ~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
...+++.++|+....+++.+++++||.+|+.+++.++|++++|.|..
T Consensus 81 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~ 127 (355)
T 3lre_A 81 DETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSA 127 (355)
T ss_dssp CTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCS
T ss_pred CCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCC
Confidence 34567899999999999999999999999999999999999999854
No 58
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.80 E-value=0.1 Score=45.35 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=28.9
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHHHHh----ccccCeeEeeccCcCCCceeEe
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVVDAA----FEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv~~v----~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.||.+.+.+.--+.+.+.+..|+...- +.+....|+.||++|+|||+..
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 456666544444444444433322111 2345668999999999999876
No 59
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=88.79 E-value=0.084 Score=46.11 Aligned_cols=47 Identities=43% Similarity=0.756 Sum_probs=42.6
Q ss_pred ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA 147 (279)
Q Consensus 101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~ 147 (279)
..+.+.++|+....+++.+++++||.+|+.+++.++|++++|.|...
T Consensus 65 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~ 111 (359)
T 1x88_A 65 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERS 111 (359)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCC
T ss_pred ccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCC
Confidence 34678999999999999999999999999999999999999998653
No 60
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=88.78 E-value=0.096 Score=45.57 Aligned_cols=46 Identities=46% Similarity=0.749 Sum_probs=41.9
Q ss_pred ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
....+.++|+....+++.+++++||.+++.+++.++|+++++.|..
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~ 111 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNK 111 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCS
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCC
Confidence 3467899999999999999999999999999999999999998854
No 61
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=88.62 E-value=0.11 Score=45.45 Aligned_cols=45 Identities=42% Similarity=0.763 Sum_probs=41.6
Q ss_pred cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
..++.++|+....+++.+++++||.+|+.+++.++|++++|.|..
T Consensus 79 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~ 123 (372)
T 3b6u_A 79 NAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIR 123 (372)
T ss_dssp TCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCT
T ss_pred cCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCC
Confidence 467899999999999999999999999999999999999999854
No 62
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.42 E-value=0.15 Score=40.24 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=16.8
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+....++.+|++|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445999999999999986
No 63
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.37 E-value=0.13 Score=43.11 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=29.7
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHHH-Hhccc---cCeeEeeccCcCCCceeEe
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVVD-AAFEG---YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv~-~v~~G---~n~~v~~yG~tgSGKT~Tl 69 (279)
.|+.+.+.+.--+.+.+.+..|+.. ..+.| ....|+-||++|+|||+.+
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4566666554444454444444331 12222 3568999999999999876
No 64
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.30 E-value=0.14 Score=42.76 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.9
Q ss_pred eEeeccCcCCCceeEec
Q psy37 54 CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~ 70 (279)
.|+.||++|+|||+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCcChHHHHHH
Confidence 38999999999999863
No 65
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=88.29 E-value=0.11 Score=45.85 Aligned_cols=45 Identities=40% Similarity=0.646 Sum_probs=41.4
Q ss_pred cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
..++.++|+....+++.+++++||.+|+.+++.++|++++|.|..
T Consensus 76 ~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~ 120 (388)
T 3bfn_A 76 RSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSP 120 (388)
T ss_dssp TCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBCS
T ss_pred CCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecCc
Confidence 467899999999999999999999999999999999999998853
No 66
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.29 E-value=0.15 Score=43.79 Aligned_cols=49 Identities=14% Similarity=0.271 Sum_probs=30.1
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHHH-Hhcccc---CeeEeeccCcCCCceeEe
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVVD-AAFEGY---NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv~-~v~~G~---n~~v~~yG~tgSGKT~Tl 69 (279)
.||.+.+.+.--+.+-+.+..|+-. .++.|. ...|+.||++|+|||+..
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 4566665555445555444444332 233442 247999999999999876
No 67
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.27 E-value=0.1 Score=45.25 Aligned_cols=39 Identities=28% Similarity=0.413 Sum_probs=25.7
Q ss_pred CHHHHHHHhHHHHHHHhc-cccCeeEeeccCcCCCceeEec
Q psy37 31 SQEQVFNDLGMDVVDAAF-EGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~-~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.+++..+.+. ..+..++ .+...+++.||++|+|||+.+.
T Consensus 23 gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 23 HREAELRRLA-EVLAPALRGEKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp TCHHHHHHHH-HTTGGGTSSCCCCCEEECBCTTSSHHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 4555555444 3333443 3556689999999999999873
No 68
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.25 E-value=0.14 Score=45.62 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=23.4
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
++++.++..-...|+..|++|||||.+|.-
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~a 186 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLYA 186 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 456666655667899999999999998853
No 69
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=88.23 E-value=0.097 Score=46.47 Aligned_cols=45 Identities=51% Similarity=0.668 Sum_probs=41.7
Q ss_pred ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145 (279)
Q Consensus 101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~ 145 (279)
..+++.++|+..+.+++.+++++||.+|+.+++.++|++++|.|.
T Consensus 131 ~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~ 175 (410)
T 1v8k_A 131 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGD 175 (410)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCB
T ss_pred cCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecC
Confidence 446789999999999999999999999999999999999999985
No 70
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=88.19 E-value=0.11 Score=45.85 Aligned_cols=46 Identities=50% Similarity=0.639 Sum_probs=40.3
Q ss_pred ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
..+++.++|+....+++.+++++||.+|+.+++.++|++++|.|..
T Consensus 111 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~ 156 (387)
T 2heh_A 111 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDL 156 (387)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC---
T ss_pred cCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCC
Confidence 4467899999999999999999999999999999999999999853
No 71
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.10 E-value=0.22 Score=44.60 Aligned_cols=50 Identities=20% Similarity=0.332 Sum_probs=35.8
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHH-hcc--cc--CeeEeeccCcCCCceeEe
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDA-AFE--GY--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~--G~--n~~v~~yG~tgSGKT~Tl 69 (279)
-+||.|-+.+.--+++.+.+..|+... .+. |. .-.|+.||+.|+|||.+.
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 357777777777777777777776532 222 33 347999999999999765
No 72
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=88.05 E-value=0.19 Score=43.50 Aligned_cols=39 Identities=36% Similarity=0.376 Sum_probs=26.5
Q ss_pred CHHHHHHHhHHHHHHHhccccCe--eEeeccCcCCCceeEec
Q psy37 31 SQEQVFNDLGMDVVDAAFEGYNA--CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G~n~--~v~~yG~tgSGKT~Tl~ 70 (279)
.|+.+-+... .+++.+-.|... .++-||++|+|||+...
T Consensus 48 G~~~~~~~l~-~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 48 GQLAARRAAG-VVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp SCHHHHHHHH-HHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred ChHHHHHHHH-HHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 3445444332 455555566654 89999999999999764
No 73
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=88.04 E-value=0.11 Score=45.31 Aligned_cols=45 Identities=47% Similarity=0.775 Sum_probs=41.3
Q ss_pred cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
...+.++|+....+++.+++++||.+|+.+++.++|+++++.|..
T Consensus 58 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~ 102 (355)
T 1goj_A 58 SCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTS 102 (355)
T ss_dssp TCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSC
T ss_pred CCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecCC
Confidence 367899999999999999999999999999999999999999853
No 74
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=87.99 E-value=0.17 Score=43.26 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=31.4
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHH-hcccc---CeeEeeccCcCCCceeEec
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDA-AFEGY---NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~G~---n~~v~~yG~tgSGKT~Tl~ 70 (279)
..||.+.+.+.--+.+.+.+..|+... .+.+. ...|+.||++|+|||+...
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 456777665555555555554443322 22222 3469999999999998763
No 75
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=87.92 E-value=0.11 Score=45.70 Aligned_cols=46 Identities=41% Similarity=0.725 Sum_probs=42.1
Q ss_pred cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37 102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA 147 (279)
Q Consensus 102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~ 147 (279)
...+.++|+....+++.+++++||.+|+.+++.++|++++|.|...
T Consensus 78 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~ 123 (373)
T 2wbe_C 78 ESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNET 123 (373)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCS
T ss_pred ccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCcc
Confidence 3578899999999999999999999999999999999999998754
No 76
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=87.88 E-value=0.18 Score=41.25 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=16.7
Q ss_pred cCeeEeeccCcCCCceeEec
Q psy37 51 YNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl~ 70 (279)
....|+-||++|+|||+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45579999999999999763
No 77
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=87.76 E-value=0.12 Score=44.79 Aligned_cols=46 Identities=52% Similarity=0.762 Sum_probs=40.8
Q ss_pred ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
...++.++|+....+++.+++++||.+|+.+++.++|++++|.|..
T Consensus 60 ~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~ 105 (344)
T 4a14_A 60 EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEAS 105 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC--
T ss_pred cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeecccc
Confidence 3467899999999999999999999999999999999999998753
No 78
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=87.29 E-value=0.25 Score=39.39 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=19.3
Q ss_pred HHHHhccccCeeEeeccCcCCCceeE
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
++..+++|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4556677866 78889999999987
No 79
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.18 E-value=0.38 Score=41.68 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=25.7
Q ss_pred CHHHHHHHhHHHHHHHhccccC-e--eEeeccCcCCCceeEec
Q psy37 31 SQEQVFNDLGMDVVDAAFEGYN-A--CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G~n-~--~v~~yG~tgSGKT~Tl~ 70 (279)
.+++..+.+. ..+...+.|.. . +++.+|++|+|||.++.
T Consensus 21 gr~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 21 HREQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTLR 62 (389)
T ss_dssp TCHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHHH
T ss_pred ChHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHHH
Confidence 4445444444 34555554433 4 79999999999999873
No 80
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=87.04 E-value=0.26 Score=44.26 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=27.4
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
|.||.... ..++...+..+ ..+++. .|....++-||++|+|||+.+.
T Consensus 102 ~tfd~fv~-g~~n~~a~~~~-~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 102 YTFENFVV-GPGNSFAYHAA-LEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CSGGGCCC-CTTTHHHHHHH-HHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CChhhcCC-CCchHHHHHHH-HHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 46776442 23344343332 233332 2324578999999999999874
No 81
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=86.94 E-value=0.31 Score=38.22 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=18.5
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++..+++|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 4555567765 677889999999654
No 82
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=86.67 E-value=0.29 Score=38.43 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=18.4
Q ss_pred HHHHhccccCeeEeeccCcCCCceeE
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
++..+++|.+ ++..++||||||.+
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHH
Confidence 4455677766 67778999999986
No 83
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.35 E-value=0.18 Score=44.00 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=20.7
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEec
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.+.++..--...|+..|++|||||.+|.
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 3444444444588999999999999884
No 84
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=86.32 E-value=0.22 Score=40.39 Aligned_cols=26 Identities=38% Similarity=0.650 Sum_probs=19.9
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
..+..+++|.| ++..++||||||.+.
T Consensus 59 ~ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 59 RAIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 34556677866 778899999999763
No 85
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=86.20 E-value=0.32 Score=40.55 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=22.9
Q ss_pred HHHHHhcccc---CeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGY---NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~---n~~v~~yG~tgSGKT~Tl 69 (279)
..+..+++|. .-||+.||+.|+|||+..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 4577788887 448999999999999865
No 86
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=86.16 E-value=0.26 Score=42.98 Aligned_cols=45 Identities=51% Similarity=0.922 Sum_probs=41.4
Q ss_pred ccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37 103 ASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA 147 (279)
Q Consensus 103 ~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~ 147 (279)
+++.++|+....+++.+++++||.+|+.+++.++|+++++.|...
T Consensus 82 ~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~ 126 (358)
T 2nr8_A 82 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATE 126 (358)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSS
T ss_pred cCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEeccccc
Confidence 468899999999999999999999999999999999999998654
No 87
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=85.93 E-value=0.25 Score=40.83 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=19.5
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeE
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
.++..++.|.| ++..++||||||.+
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHH
Confidence 45556677866 78889999999976
No 88
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=85.81 E-value=0.33 Score=39.35 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=19.2
Q ss_pred HHHHhccccCeeEeeccCcCCCceeE
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
++..+++|.+ ++..++||||||.+
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 4556678877 68889999999986
No 89
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.20 E-value=0.34 Score=41.44 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=26.8
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
-.|+.+.+.+.--+ .+...+-.|....++-||++|+|||+++
T Consensus 34 ~~~~~i~g~~~~~~--------~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 34 KNLDEVTAQDHAVT--------VLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp SSTTTCCSCCTTHH--------HHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred CCHHHhhCCHHHHH--------HHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 34677665544332 2333344564445999999999999876
No 90
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.64 E-value=0.19 Score=41.19 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=15.6
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...|+-||++|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 446999999999999875
No 91
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.59 E-value=0.27 Score=39.38 Aligned_cols=28 Identities=21% Similarity=0.506 Sum_probs=20.4
Q ss_pred HHHHhccccC--eeEeeccCcCCCceeEec
Q psy37 43 VVDAAFEGYN--ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 43 lv~~v~~G~n--~~v~~yG~tgSGKT~Tl~ 70 (279)
.+..++.|.. -+++.||+.|+|||+...
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 3444555643 479999999999998753
No 92
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=84.58 E-value=0.31 Score=42.35 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=31.3
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHH-hccc---cCeeEeeccCcCCCceeEe
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDA-AFEG---YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~G---~n~~v~~yG~tgSGKT~Tl 69 (279)
..|+.+.+.+.--+.+.+.+..|+-.. ++.+ ....|+.||++|+|||+..
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 457777766665556655555443222 2222 1246899999999999865
No 93
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=84.50 E-value=0.46 Score=39.93 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=16.7
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34447999999999999987
No 94
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=84.49 E-value=0.25 Score=43.43 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=29.8
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHH-hcc---ccCeeEeeccCcCCCceeEec
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDA-AFE---GYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~---G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
..||.+.+.+.--+.+.+.+..|+... ++. .-...|+-||++|+|||+...
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHH
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHH
Confidence 356766655444444444443333311 112 224689999999999998763
No 95
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.48 E-value=0.31 Score=41.85 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=26.0
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.|+.++ .|+++.+.+ -..+-.|.-..++.||+.|+|||+++.
T Consensus 23 ~~~~~~----g~~~~~~~L----~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVY----GQNEVITTV----RKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCC----SCHHHHHHH----HHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhc----CcHHHHHHH----HHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 355555 345554432 233335644448899999999999873
No 96
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=84.37 E-value=0.17 Score=42.32 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=26.3
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHHHH-hccccC----eeEeeccCcCCCceeEe
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVVDA-AFEGYN----ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~G~n----~~v~~yG~tgSGKT~Tl 69 (279)
.||.|-+.+.-.+++.+.+..|+-.. ++++++ ..|+.||+.|+|||+.+
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 44555544444555555555444321 222222 22899999999999876
No 97
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=84.33 E-value=0.43 Score=38.43 Aligned_cols=26 Identities=35% Similarity=0.631 Sum_probs=19.2
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.++..+++|.+ ++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 54 QTIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 34556677876 667789999999863
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=84.28 E-value=0.26 Score=40.90 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=16.6
Q ss_pred cCeeEeeccCcCCCceeEec
Q psy37 51 YNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl~ 70 (279)
-...+...|++|||||.+|.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 44578889999999999873
No 99
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=83.99 E-value=0.35 Score=43.54 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=27.6
Q ss_pred CHHHHHHHhHHHHHHHhccccC--eeEeeccCcCCCceeEec
Q psy37 31 SQEQVFNDLGMDVVDAAFEGYN--ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G~n--~~v~~yG~tgSGKT~Tl~ 70 (279)
.|+++-+.+. .+++.+..|.. ..|+.||++|+|||+...
T Consensus 41 G~~~~~~~l~-~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 41 GQENAREACG-VIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp SCHHHHHHHH-HHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 5666655543 56666666654 378899999999998763
No 100
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=83.78 E-value=0.24 Score=43.38 Aligned_cols=44 Identities=57% Similarity=1.008 Sum_probs=39.4
Q ss_pred cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
.+++.++|+. ..+++.+++++||.+|+.+++.++|++++|.|..
T Consensus 58 ~~~Q~~Vy~~-~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~ 101 (369)
T 3cob_A 58 NATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGAD 101 (369)
T ss_dssp TCCHHHHHHT-TTHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCS
T ss_pred CCCcceehhh-hhhhhHhhhcCCceEEEEECCCCCCCeEeecCCC
Confidence 4678899998 5789999999999999999999999999998863
No 101
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.54 E-value=0.43 Score=35.38 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=16.2
Q ss_pred cCeeEeeccCcCCCceeEec
Q psy37 51 YNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.+..|+-+|++|+|||+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHG
T ss_pred CCCcEEEECCCCccHHHHHH
Confidence 34568889999999998763
No 102
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=83.50 E-value=0.49 Score=37.56 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=19.4
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
..+..+++|.| ++..++||||||.+.
T Consensus 43 ~~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 43 ECIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCchhhhh
Confidence 34556677876 667789999999764
No 103
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=83.42 E-value=0.49 Score=37.84 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=18.6
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+..+++|.| ++..++||||||.+.
T Consensus 50 ~i~~~~~~~~--~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGID--LIVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4455667876 467789999999763
No 104
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=83.39 E-value=0.5 Score=38.53 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=18.5
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++..+++|.| ++..++||||||.+.
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4555677876 566789999999763
No 105
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=83.32 E-value=0.27 Score=43.18 Aligned_cols=44 Identities=52% Similarity=0.964 Sum_probs=39.1
Q ss_pred cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
.+.+.++|+.. ..++.+++++||.+|+.+++.++|++++|.|..
T Consensus 94 ~~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~ 137 (376)
T 2rep_A 94 GSGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGP 137 (376)
T ss_dssp TCCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCS
T ss_pred cccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCC
Confidence 46788899885 478899999999999999999999999999864
No 106
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=83.01 E-value=0.26 Score=42.50 Aligned_cols=45 Identities=49% Similarity=0.953 Sum_probs=39.5
Q ss_pred ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
..+++.++|+.. .+++.+++++||.+++.+++.++|++++|.|..
T Consensus 58 ~~~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~ 102 (330)
T 2h58_A 58 PQASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTA 102 (330)
T ss_dssp TTCCHHHHHTTT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCS
T ss_pred CCCCcHhHHHHH-HHHHHHHhCCCEEEEEeECCCCCCCcEEEecCC
Confidence 346788999874 789999999999999999999999999999853
No 107
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=82.80 E-value=0.5 Score=43.03 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=30.1
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHH-----HHhccccCeeEeeccCcCCCceeEe
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVV-----DAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv-----~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|+.+.+.+..-+++.+.+..++- ..+--.....|+-||++|+|||+..
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 456666555555556555544321 1111234567999999999999876
No 108
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=82.71 E-value=0.55 Score=39.66 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=21.0
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeE
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
..+..++.|..-.+++.++||||||.+
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp HHHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCCccHH
Confidence 356667887555688899999999976
No 109
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=82.63 E-value=0.28 Score=42.61 Aligned_cols=42 Identities=50% Similarity=1.010 Sum_probs=37.4
Q ss_pred ccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37 103 ASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145 (279)
Q Consensus 103 ~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~ 145 (279)
..+.++|+.. .+++.+++++||.+|+.+++.++|++++|.|.
T Consensus 64 ~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~ 105 (347)
T 1f9v_A 64 DTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP 105 (347)
T ss_dssp CCHHHHHHHH-HHHHGGGGGTCCEEEEEECCTTSSHHHHHHST
T ss_pred CCHHHHHHHH-HHHHHHhcCCceeEEEEECCCCCCCcEeccCC
Confidence 5678899875 47999999999999999999999999999874
No 110
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=82.55 E-value=0.29 Score=36.46 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=16.7
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
..+..|+-+|++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45567899999999999875
No 111
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.52 E-value=0.34 Score=41.82 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=17.4
Q ss_pred ccCeeEeeccCcCCCceeEec
Q psy37 50 GYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
+....++.||++|+|||..+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 445689999999999999863
No 112
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=82.49 E-value=0.32 Score=43.65 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=28.7
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHH-Hhccc---cCeeEeeccCcCCCceeEe
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVD-AAFEG---YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~-~v~~G---~n~~v~~yG~tgSGKT~Tl 69 (279)
..||.+.+.+.--+.+.+.+..|+-. .++.| ....|+.||++|+|||+..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 45677665443333333333333221 22333 2357999999999999876
No 113
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=82.32 E-value=0.57 Score=38.26 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=18.5
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++..+++|.+ ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 4555677866 566679999999763
No 114
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.20 E-value=0.57 Score=41.44 Aligned_cols=49 Identities=24% Similarity=0.395 Sum_probs=34.6
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHHHH-hcc--cc--CeeEeeccCcCCCceeEe
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVVDA-AFE--GY--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~--G~--n~~v~~yG~tgSGKT~Tl 69 (279)
+||.|-+-+.--+++-+.+..|+... .+. |. .-.|+.||+.|+|||...
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 46777776666777777777776543 332 33 346999999999999865
No 115
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.86 E-value=0.3 Score=43.63 Aligned_cols=49 Identities=22% Similarity=0.461 Sum_probs=32.1
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHHHH-hcc--ccC--eeEeeccCcCCCceeEe
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVVDA-AFE--GYN--ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~--G~n--~~v~~yG~tgSGKT~Tl 69 (279)
+||.|-+-+.--+++.+.+..|+... .+. |.. -.|+.||+.|+|||...
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH
Confidence 46666666666666666666555432 222 332 35999999999999865
No 116
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=81.84 E-value=0.67 Score=40.41 Aligned_cols=26 Identities=38% Similarity=0.648 Sum_probs=20.8
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
..+..+++|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 45667778887 688999999999863
No 117
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=81.73 E-value=0.63 Score=37.34 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=18.0
Q ss_pred HHHHhccccCeeEeeccCcCCCceeE
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
.+..+++|.| ++..++||||||.+
T Consensus 54 ~i~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 54 AIPLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3445667876 56678999999976
No 118
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.45 E-value=0.39 Score=41.62 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=24.7
Q ss_pred HHHHHHHhHHHHHHHhcc-ccCeeEeeccCcCCCceeEe
Q psy37 32 QEQVFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 32 q~~vy~~~~~~lv~~v~~-G~n~~v~~yG~tgSGKT~Tl 69 (279)
+++..+.+. ..+..++. +...+|+.||++|+|||..+
T Consensus 25 r~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 25 REDILRDAA-IAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CHHHHHHHH-HHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred hHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 444444443 34445444 44558999999999999976
No 119
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=81.26 E-value=0.72 Score=41.46 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=22.5
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeE
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
..+..++.|.+..++..|+||||||..
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 456677888777899999999999976
No 120
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=81.22 E-value=0.4 Score=37.71 Aligned_cols=24 Identities=42% Similarity=0.494 Sum_probs=17.7
Q ss_pred HHHhccccCeeEeeccCcCCCceeEe
Q psy37 44 VDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 44 v~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+..+++|.+ ++..++||+|||.+.
T Consensus 42 i~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 42 AQPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCCHHHHH
Confidence 344456654 677899999999875
No 121
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.21 E-value=0.31 Score=43.21 Aligned_cols=45 Identities=49% Similarity=0.932 Sum_probs=38.7
Q ss_pred cccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37 100 PQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145 (279)
Q Consensus 100 ~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~ 145 (279)
....++.++|.... +++.+++++||.+|+.+++.++|++++|.|.
T Consensus 117 ~~~~~Q~~Vf~~v~-~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~ 161 (403)
T 4etp_A 117 DQQDTNVDVFKEVG-QLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP 161 (403)
T ss_dssp CTTCCHHHHHHHHH-HHHHHHHTTCCEEEEEESCTTSSHHHHHHCT
T ss_pred CCCCchHHHHHHHH-HHHHHHhCCcceEEEEECCCCCCCceEeCCC
Confidence 34467888998754 7899999999999999999999999999864
No 122
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=80.98 E-value=0.34 Score=42.10 Aligned_cols=43 Identities=44% Similarity=1.002 Sum_probs=37.8
Q ss_pred cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37 102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145 (279)
Q Consensus 102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~ 145 (279)
...+.++|+.. .+++.+++++||.+|+.+++.++|++++|.|.
T Consensus 64 ~~~Q~~vf~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~ 106 (349)
T 3t0q_A 64 SHTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA 106 (349)
T ss_dssp TCCHHHHHHHH-HHHHHGGGTTCEEEEEEECSTTSSHHHHHHST
T ss_pred CccHHHHHHHH-HHHHHHHHCCcceeEEEeCCCCCCCceEeCCC
Confidence 45678899875 57899999999999999999999999999874
No 123
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=80.77 E-value=1.5 Score=36.80 Aligned_cols=31 Identities=29% Similarity=0.283 Sum_probs=20.9
Q ss_pred hHHHHHHHhccc-----cCeeEeeccCcCCCceeEe
Q psy37 39 LGMDVVDAAFEG-----YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 39 ~~~~lv~~v~~G-----~n~~v~~yG~tgSGKT~Tl 69 (279)
+...++..++.| ....|+..|++|||||...
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 333455555543 2457899999999999864
No 124
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.76 E-value=0.76 Score=41.15 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=34.5
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHH-hcc--cc--CeeEeeccCcCCCceeEe
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDA-AFE--GY--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~--G~--n~~v~~yG~tgSGKT~Tl 69 (279)
.+||.|-+-+.--+++-+.+..|+... .+. |. .-.|+.||+.|+|||.+.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 456777776666667777776665533 332 33 347999999999999865
No 125
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=80.72 E-value=0.31 Score=43.28 Aligned_cols=44 Identities=50% Similarity=0.963 Sum_probs=38.5
Q ss_pred ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145 (279)
Q Consensus 101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~ 145 (279)
..+.+.++|... .+++.+++++||.+|+.+++.++|++++|.|.
T Consensus 116 ~~~~Q~~Vf~~v-~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~ 159 (412)
T 3u06_A 116 PLSSQSDIFEMV-SPLIQSALDGYNICIFAYGQTGSGKTYTMDGV 159 (412)
T ss_dssp TTCCHHHHHTTT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHTEE
T ss_pred CCCCHHHHHHHH-HHHHHHHHCCCceEEEEecCCCCCCeeEecCC
Confidence 346788899854 58999999999999999999999999999874
No 126
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=80.59 E-value=0.45 Score=37.84 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=17.7
Q ss_pred HHHHhccccCeeEeeccCcCCCceeE
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
++..+++|.| ++..++||||||.+
T Consensus 34 ~i~~~~~~~~--~lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 34 IIPGALRGES--MVGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHHTCC--EEEECCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 3455566765 56778999999986
No 127
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=80.46 E-value=0.59 Score=37.87 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=18.0
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++..+++|.| ++..++||||||.+.
T Consensus 59 ~i~~~~~g~~--~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLD--MVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCC--EEEEECTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCcCHHHHHH
Confidence 3455567866 556679999999873
No 128
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=80.37 E-value=0.91 Score=39.61 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=20.0
Q ss_pred HHhccc---cCeeEee--ccCcCCCceeEec
Q psy37 45 DAAFEG---YNACVFA--YGQTGSGKTFTMM 70 (279)
Q Consensus 45 ~~v~~G---~n~~v~~--yG~tgSGKT~Tl~ 70 (279)
..+..| ....++. ||+.|+|||..+.
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHH
Confidence 455555 5567888 9999999999863
No 129
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=80.35 E-value=0.53 Score=39.69 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=22.9
Q ss_pred CHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 31 SQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|+++.+.+. ..+ -.|....++-||+.|+|||++.
T Consensus 29 g~~~~~~~l~-~~l---~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 29 GQEHIVKRLK-HYV---KTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp SCHHHHHHHH-HHH---HHTCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHHHHHH-HHH---HcCCCCeEEEECcCCCCHHHHH
Confidence 4555544433 222 3455445999999999999876
No 130
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=80.29 E-value=0.63 Score=37.58 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=17.6
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++..+.+|. .++..|+||||||..+
T Consensus 69 ~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 69 ILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 344445554 5678899999999754
No 131
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=80.00 E-value=0.54 Score=37.27 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.6
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
..++.+|++|+|||+.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478999999999998763
No 132
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=79.85 E-value=0.48 Score=44.66 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=19.2
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.|..++...+ -.+-.|+.|||||+|+..
T Consensus 197 AV~~al~~~~-~~lI~GPPGTGKT~ti~~ 224 (646)
T 4b3f_X 197 AVLFALSQKE-LAIIHGPPGTGKTTTVVE 224 (646)
T ss_dssp HHHHHHHCSS-EEEEECCTTSCHHHHHHH
T ss_pred HHHHHhcCCC-ceEEECCCCCCHHHHHHH
Confidence 4555554333 346779999999999853
No 133
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=79.69 E-value=0.61 Score=37.88 Aligned_cols=25 Identities=28% Similarity=0.205 Sum_probs=18.2
Q ss_pred HHHhccccCeeEeeccCcCCCceeEec
Q psy37 44 VDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 44 v~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
+..++++.+ ++..|+||+|||+...
T Consensus 102 i~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 102 LERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 444566654 6778899999999863
No 134
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=79.08 E-value=0.42 Score=41.68 Aligned_cols=47 Identities=38% Similarity=0.617 Sum_probs=41.0
Q ss_pred cccccHHHHHhhhchhhHhhhhh-ccceeeeeccccCCCceEEEeccc
Q psy37 100 PQFASQEQVFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFTMMGSK 146 (279)
Q Consensus 100 ~~~~s~~ei~~~~~~~l~~s~~e-~~~~~v~dl~~~~~~~~~~~~g~~ 146 (279)
....++.++|+....+++.++++ +|+.+|+.+++.++|++++|.|..
T Consensus 59 ~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~~ 106 (360)
T 1ry6_A 59 DDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQ 106 (360)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSS
T ss_pred cCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecCC
Confidence 34467889999998999888886 899999999999999999999864
No 135
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=78.90 E-value=0.39 Score=42.06 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=20.5
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEec
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
++..+.---...|+..|++|||||.+|.
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHH
Confidence 4444443345678899999999999873
No 136
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.87 E-value=0.96 Score=40.33 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=32.3
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHHHH-hcc--cc--CeeEeeccCcCCCceeEe
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVVDA-AFE--GY--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~--G~--n~~v~~yG~tgSGKT~Tl 69 (279)
+||.|-+-+.--+++.+.+..|+... .+. |. .-.|+.||+.|+|||...
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 46666666666666666666665422 222 33 357999999999999754
No 137
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=78.86 E-value=0.89 Score=39.91 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=18.7
Q ss_pred HHHHhccccCeeEeeccCcCCCceeE
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
++..+++|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 4556677865 67889999999983
No 138
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=78.61 E-value=1.3 Score=36.31 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=23.5
Q ss_pred HHHHHHHhHHHHHHHhcccc-CeeEeeccCcCCCceeEe
Q psy37 32 QEQVFNDLGMDVVDAAFEGY-NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 32 q~~vy~~~~~~lv~~v~~G~-n~~v~~yG~tgSGKT~Tl 69 (279)
-+.+|+.+...++.....+. ...|+..|++|||||...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 34455555444444333322 356889999999999753
No 139
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=78.47 E-value=0.93 Score=38.59 Aligned_cols=45 Identities=27% Similarity=0.270 Sum_probs=28.4
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHHHHhc--cccCeeEeeccCcCCCceeEec
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVVDAAF--EGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv~~v~--~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.|+.+. .++++.+.+. ..+..+. .+....|+.+|++|+|||+...
T Consensus 27 ~~~~ii----G~~~~~~~l~-~~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 27 NFDGYI----GQESIKKNLN-VFIAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp SGGGCC----SCHHHHHHHH-HHHHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhC----ChHHHHHHHH-HHHHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 345544 4455555443 4444443 3445679999999999998763
No 140
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=78.33 E-value=0.82 Score=38.32 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.9
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...++-+|++|+|||++.
T Consensus 47 ~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SEEEEEESCSSSSHHHHH
T ss_pred ceEEEEECCCCcCHHHHH
Confidence 368999999999999876
No 141
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=78.17 E-value=0.66 Score=42.44 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=16.4
Q ss_pred cccCeeEeeccCcCCCceeEec
Q psy37 49 EGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.|.+ ++..|+||||||.+|.
T Consensus 259 ~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHHH
Confidence 5655 7788999999999874
No 142
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=78.06 E-value=0.92 Score=39.58 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=20.1
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
..+..+++|.| ++..++||||||.+.
T Consensus 66 ~ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 66 RAIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCCchHHH
Confidence 35666778877 677889999999753
No 143
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=78.04 E-value=0.74 Score=42.69 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=18.5
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEec
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
+++.+.+|.+.++++ ++||||||.+++
T Consensus 190 ~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 190 AVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 334444576655555 999999999864
No 144
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=77.94 E-value=0.9 Score=39.51 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=21.3
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeE
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
.++..++.|.+..++..++||||||..
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~ 80 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAA 80 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHH
Confidence 356666777666788889999999986
No 145
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=77.83 E-value=0.88 Score=37.99 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.9
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...|+.||++|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567899999999999876
No 146
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=77.12 E-value=0.76 Score=41.26 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=25.6
Q ss_pred CHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 31 SQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|+++.... ..+...+-.|.-..|+-||++|+|||+..
T Consensus 30 Gq~~~~~~~-~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 30 GQQHLLAAG-KPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp SCHHHHSTT-SHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CcHHHHhch-HHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 566665321 23344444566678999999999999876
No 147
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=76.78 E-value=0.58 Score=45.63 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=28.4
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.||.+.+.+ +. +..+++.+..+....++.+|++|+|||+.+.+
T Consensus 168 ~ld~viGr~----~~----i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 168 KLDPVIGRD----EE----IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CSCCCCSCH----HH----HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred CCcccCCcH----HH----HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 466666443 22 23344444556666789999999999998754
No 148
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=76.73 E-value=0.87 Score=38.13 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=17.1
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|....++-||+.|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 455555999999999999875
No 149
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=76.55 E-value=1 Score=38.75 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=20.9
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.++..+++|....++..++||||||.+.
T Consensus 34 ~~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 34 RALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 3456667775566788899999999753
No 150
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=76.42 E-value=0.72 Score=37.03 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=22.2
Q ss_pred HHHHHhccc-c--CeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEG-Y--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G-~--n~~v~~yG~tgSGKT~Tl 69 (279)
+-+|.++.| + ...+..+|++|+|||..+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 568888854 3 357888999999999876
No 151
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=76.30 E-value=0.99 Score=38.18 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=19.3
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+..+. ..+..|+-+|++|+|||+..
T Consensus 17 ~~~~~a-~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 17 EIAMVA-PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp HHHHHC-STTSCEEEESCTTSCHHHHH
T ss_pred HHHHHh-CCCCcEEEECCCCchHHHHH
Confidence 333443 45678999999999999865
No 152
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.29 E-value=1.4 Score=39.74 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=21.5
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
++..+-.+....++-||++|+|||+...+
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 33334456667789999999999998754
No 153
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=75.63 E-value=1.3 Score=34.96 Aligned_cols=29 Identities=24% Similarity=0.150 Sum_probs=19.6
Q ss_pred HHHHHHhcc--ccCeeEeeccCcCCCceeEe
Q psy37 41 MDVVDAAFE--GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 41 ~~lv~~v~~--G~n~~v~~yG~tgSGKT~Tl 69 (279)
..+++.+.. .-...|.-.|++|||||..+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 344455442 34456777899999999865
No 154
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.62 E-value=0.84 Score=41.10 Aligned_cols=49 Identities=18% Similarity=0.369 Sum_probs=33.1
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHHHH-hcc--cc--CeeEeeccCcCCCceeEe
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVVDA-AFE--GY--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~--G~--n~~v~~yG~tgSGKT~Tl 69 (279)
+||.|-+-+.--+++.+.+..|+... .+. |. .-.|+.||+.|+|||...
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 56777666666666666666665432 232 32 457999999999999754
No 155
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=75.60 E-value=1 Score=39.07 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=18.6
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++..+++|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 4555667766 677889999999753
No 156
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=75.39 E-value=1.2 Score=37.36 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=18.2
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++..+++|.+ ++..++||||||.+.
T Consensus 24 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 24 TIPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 3445567765 667789999999754
No 157
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=74.97 E-value=1.6 Score=36.74 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=16.8
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
+....|+-+|++|+|||+..
T Consensus 36 ~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 34568999999999999876
No 158
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=74.57 E-value=0.54 Score=36.01 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.2
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
..+...|++|||||..+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 467789999999999874
No 159
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=74.06 E-value=1.2 Score=40.08 Aligned_cols=37 Identities=27% Similarity=0.214 Sum_probs=25.0
Q ss_pred CCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 29 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 29 ~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
+..|.++...+.. .+-++ +..++..|+.|||||+++.
T Consensus 27 n~~Q~~av~~~~~----~i~~~-~~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 27 TEGQKNAFNIVMK----AIKEK-KHHVTINGPAGTGATTLTK 63 (459)
T ss_dssp CHHHHHHHHHHHH----HHHSS-SCEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHHH----HHhcC-CCEEEEEeCCCCCHHHHHH
Confidence 4567777665542 22223 3489999999999998763
No 160
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=73.89 E-value=0.89 Score=38.65 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.3
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
..|+.||++|+|||+.+.
T Consensus 47 ~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CCEEEESCCCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 478899999999998763
No 161
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=73.86 E-value=1.6 Score=40.72 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=19.1
Q ss_pred HHHHhccccCeeEeeccCcCCCceeE
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
+|..+++|.| +++.++||+|||.+
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHH
Confidence 4566677887 67788999999974
No 162
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=73.53 E-value=1.4 Score=39.06 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=18.6
Q ss_pred HHHHhccccCeeEeeccCcCCCceeE
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
.+..+++|.| +++.++||||||..
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a 109 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAA 109 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHH
Confidence 4555678876 67778999999985
No 163
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.45 E-value=0.84 Score=39.07 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=15.8
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
|.-..++-+|++|+|||+++
T Consensus 34 ~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 34 RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp TCCCCEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 43333889999999999976
No 164
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=73.18 E-value=1.5 Score=38.27 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=18.4
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++..+++|.| ++..++||||||.+.
T Consensus 45 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 45 AIPIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHccCCC--EEEEcCCCCHHHHHH
Confidence 3445667876 567889999999753
No 165
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=73.09 E-value=1 Score=35.75 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=21.0
Q ss_pred HHHHHhcc-cc--CeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFE-GY--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~-G~--n~~v~~yG~tgSGKT~Tl 69 (279)
+.++.++. |. ...+..+|++|+|||..+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 56777775 44 246777899999999875
No 166
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=72.63 E-value=2.7 Score=40.62 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=35.8
Q ss_pred ecCCCCCCCCCHHHHHHHhHHHHHHH-hccccC----eeEeeccCcCCCceeEe
Q psy37 21 SFDPSSPQFASQEQVFNDLGMDVVDA-AFEGYN----ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 21 ~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~G~n----~~v~~yG~tgSGKT~Tl 69 (279)
.||.|-+-+.--+++.+.+..|+... ++.++. ..|+.||+.|+|||...
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 46777788888888877777676543 444432 47999999999999744
No 167
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=72.55 E-value=1.8 Score=39.70 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=21.0
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeE
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
.+|..++.|-.-.++..++||||||.+
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHH
Confidence 355666766666788999999999985
No 168
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=72.02 E-value=1.2 Score=38.19 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=14.5
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..++-||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 45788999999999865
No 169
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=71.93 E-value=1.9 Score=36.43 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=15.5
Q ss_pred CeeEeeccCcCCCceeEec
Q psy37 52 NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~ 70 (279)
...++.+|++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 3567888889999999874
No 170
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=71.55 E-value=1.8 Score=37.22 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=19.5
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
..+..+++|.+ ++..++||+|||.+.
T Consensus 37 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 37 ECIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 35566777866 667789999999764
No 171
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=71.51 E-value=1 Score=42.10 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=15.9
Q ss_pred CeeEeeccCcCCCceeEec
Q psy37 52 NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~ 70 (279)
+..++..|++|||||+|+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 4578889999999998863
No 172
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=71.13 E-value=1.2 Score=35.21 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=21.7
Q ss_pred HHHHHhcc-ccC--eeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFE-GYN--ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~-G~n--~~v~~yG~tgSGKT~Tl 69 (279)
+-+|.++. |+. ..+.-.|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 56777884 443 47888999999999875
No 173
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=71.05 E-value=1.1 Score=42.09 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=15.0
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
..++..|+.|||||+|+.
T Consensus 196 ~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 356789999999999864
No 174
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=70.92 E-value=2.2 Score=36.60 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=15.5
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...|...|++|||||.++
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457888999999999876
No 175
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=70.80 E-value=1.1 Score=35.63 Aligned_cols=26 Identities=42% Similarity=0.542 Sum_probs=18.0
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+++++-.|-- +...|++|||||..|
T Consensus 14 ~~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHHhccCCCE--EEEECCCCCCHHHHH
Confidence 35555544543 445899999999866
No 176
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=70.78 E-value=1 Score=41.06 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=14.4
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+.||++|+|||+.+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999865
No 177
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=70.22 E-value=2.3 Score=36.40 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=22.9
Q ss_pred CHHHHHHHhHHHHHHHhccc-cCeeEeeccCcCCCceeEec
Q psy37 31 SQEQVFNDLGMDVVDAAFEG-YNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G-~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.++++.+.+. ..+ -.| ....++.||+.|+|||.++.
T Consensus 20 g~~~~~~~L~-~~l---~~~~~~~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 20 GQEHVLTALA-NGL---SLGRIHHAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp SCHHHHHHHH-HHH---HHTCCCSEEEEESCTTSSHHHHHH
T ss_pred CcHHHHHHHH-HHH---HhCCCCeEEEEECCCCCCHHHHHH
Confidence 4555554433 222 233 34578999999999998763
No 178
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.20 E-value=1.7 Score=36.39 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=16.6
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|.-..++.||+.|+|||+..
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 454344999999999999875
No 179
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=70.03 E-value=0.94 Score=40.30 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.0
Q ss_pred hccccCeeEeeccCcCCCceeEe
Q psy37 47 AFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 47 v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+++|++-.|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 68999999999999999999855
No 180
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=69.96 E-value=2.1 Score=33.55 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=22.3
Q ss_pred HHHHHhcc-ccC--eeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFE-GYN--ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~-G~n--~~v~~yG~tgSGKT~Tl 69 (279)
+-+|.++. |+. ..++.+|++|+|||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 56788886 554 47899999999999765
No 181
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=69.67 E-value=0.78 Score=35.53 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.3
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+...|++|||||.++
T Consensus 3 ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567899999999875
No 182
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=69.56 E-value=1.2 Score=33.45 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=13.6
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999854
No 183
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=69.19 E-value=2 Score=38.99 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=18.9
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++..+++|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 4555677876 667789999999764
No 184
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=69.17 E-value=1.8 Score=39.16 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.8
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+-||++|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999865
No 185
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=69.06 E-value=1.7 Score=37.72 Aligned_cols=18 Identities=39% Similarity=0.630 Sum_probs=15.8
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...|+.||++|+|||+..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999875
No 186
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=68.95 E-value=2.9 Score=40.10 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=21.2
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
++..+..+....++-||++|+|||....+
T Consensus 192 l~~~l~~~~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHhCCCCCCeEEECCCCCCHHHHHHH
Confidence 33344456666799999999999987644
No 187
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=68.95 E-value=0.87 Score=36.02 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.3
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 45777899999999876
No 188
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=68.87 E-value=0.88 Score=35.04 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=13.6
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+...|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999866
No 189
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=68.71 E-value=1.4 Score=38.04 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=18.3
Q ss_pred HHHHhccccCeeEeeccCcCCCceeE
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
.+..+++|.+ ++..++||||||.+
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~ 74 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGT 74 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 4555667766 56778999999986
No 190
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=68.60 E-value=1.9 Score=39.15 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=20.2
Q ss_pred HHHHhccccCeeEeeccCcCCCceeE
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
.+..+++|.+..++..++||||||.+
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHH
Confidence 34556777556788899999999986
No 191
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=68.05 E-value=0.97 Score=42.28 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=17.0
Q ss_pred cCeeEeeccCcCCCceeEec
Q psy37 51 YNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.+..++..|+.|||||+||.
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHH
Confidence 35678889999999999985
No 192
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=67.87 E-value=0.95 Score=35.32 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.3
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|...|++|||||..+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4667799999999865
No 193
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=67.85 E-value=2.9 Score=35.32 Aligned_cols=17 Identities=35% Similarity=0.632 Sum_probs=15.0
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..+...|++|||||.++
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 47788999999999987
No 194
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=67.83 E-value=1.2 Score=38.45 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=16.0
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
....|+.+|++|+|||+..
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467899999999999875
No 195
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=67.76 E-value=2.2 Score=40.17 Aligned_cols=25 Identities=40% Similarity=0.492 Sum_probs=19.3
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+|..+++|.+ ++..++||+|||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 4556667766 677899999999864
No 196
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=67.61 E-value=1.7 Score=35.92 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=16.7
Q ss_pred HHHhccccCeeEeeccCcCCCceeEec
Q psy37 44 VDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 44 v~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
+..++++.++ +..++||+|||.+..
T Consensus 122 i~~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 122 VFEGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHHHhcCCe--EEEcCCCCCcHHHHH
Confidence 4444555443 349999999998863
No 197
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=67.35 E-value=0.91 Score=35.64 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=13.8
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+...|++|||||..+
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678899999999876
No 198
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=67.27 E-value=0.93 Score=38.31 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=16.7
Q ss_pred hccccCeeEeeccCcCCCceeEe
Q psy37 47 AFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 47 v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+++|++..|+..|++|+|||..|
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHH
T ss_pred EEcCCCEEEEEECCCCCCHHHHH
Confidence 67899999999999999999765
No 199
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=67.16 E-value=3.3 Score=39.30 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=19.3
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++.|.||+.-|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 799999999999999999763
No 200
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=67.10 E-value=2.9 Score=40.07 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=24.3
Q ss_pred CHHHHHHHhHHHHHHHhccccC------eeEeeccCcCCCceeEe
Q psy37 31 SQEQVFNDLGMDVVDAAFEGYN------ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G~n------~~v~~yG~tgSGKT~Tl 69 (279)
.|+++-+.+. ..+.....|.. +.++-+|++|+|||+..
T Consensus 495 Gq~~a~~~l~-~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVAVA-KAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHHHH-HHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHHHH-HHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 3455544444 33444444433 37999999999999875
No 201
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=66.60 E-value=1.5 Score=33.24 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.1
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|..|||||...
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 35889999999999853
No 202
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=66.39 E-value=2.4 Score=39.88 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=18.0
Q ss_pred HHHHhccccCeeEeeccCcCCCceeE
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
+|..+++|.| ++..++||||||..
T Consensus 21 ~i~~~l~g~~--~iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 21 LALPAMKGKN--TIICAPTGCGKTFV 44 (696)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCchHHHH
Confidence 3455567776 66788999999984
No 203
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=66.37 E-value=1.8 Score=32.87 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|.+|||||...
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999764
No 204
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=66.33 E-value=2.9 Score=38.59 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=20.2
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeE
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
.+|..++.|-.--+++.++||||||.+
T Consensus 50 ~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 50 KTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 345566655556778889999999985
No 205
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=66.13 E-value=3 Score=39.92 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=21.7
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
+++.+.......++.+|++|+|||+.+.+
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHHH
Confidence 44444555667789999999999997643
No 206
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=66.06 E-value=1.7 Score=42.13 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=18.3
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEec
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.|..++. +..++..|+.|||||+|+.
T Consensus 368 Av~~~l~--~~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 368 AVSHVLQ--RPLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp HHHHHTT--CSEEEEECSTTSSHHHHHH
T ss_pred HHHHHhc--CCCEEEECCCCCCHHHHHH
Confidence 3444443 3356789999999999864
No 207
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=65.97 E-value=1 Score=39.44 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.8
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
.|..++..|++|||||+++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred ccCceEEEcCCCCCHHHHH
Confidence 4556778899999999976
No 208
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=65.97 E-value=1.5 Score=41.87 Aligned_cols=49 Identities=47% Similarity=0.782 Sum_probs=40.7
Q ss_pred CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37 96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145 (279)
Q Consensus 96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~ 145 (279)
+..+....++.++|+.. .+++.+++++||.+|+.+++.++|+++++.|.
T Consensus 435 d~vf~~~~~q~~v~~~~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~ 483 (715)
T 4h1g_A 435 DKIFEREQSNDLVFEEL-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP 483 (715)
T ss_dssp SEEECSSCCHHHHGGGT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT
T ss_pred ceEeCCCCCHHHHHHHH-HHHHHHHhCCceEEEEccCCCCCchhhccCCC
Confidence 33344557789999875 47899999999999999999999999998763
No 209
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=65.76 E-value=2.6 Score=38.14 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=18.5
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++..+++|.| ++..++||||||.+.
T Consensus 12 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 12 LALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCChHHHHH
Confidence 3455567766 567799999999763
No 210
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=65.57 E-value=3.7 Score=39.41 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.3
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++.|.||+.-|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999764
No 211
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=65.50 E-value=2.6 Score=41.91 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.3
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++.|.||+.-|.+|||||.+.
T Consensus 141 ~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEecCCCCCHHHHH
Confidence 799999999999999999754
No 212
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=65.35 E-value=2.6 Score=41.80 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.3
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++.|.||+.-|.+|||||.+.
T Consensus 143 ~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999763
No 213
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=65.32 E-value=1.5 Score=33.46 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|.+|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35888999999999865
No 214
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=65.20 E-value=2.7 Score=38.23 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=15.0
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+-||++|+|||+..
T Consensus 42 ~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp CEEEEECCSSSSHHHHH
T ss_pred CeeEeecCchHHHHHHH
Confidence 47889999999999875
No 215
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=65.06 E-value=2.6 Score=37.61 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=18.3
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.++.++++.+ ++..++||+|||.+.
T Consensus 101 ai~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 101 ALERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCC--EEEEeCCCCCHHHHH
Confidence 3445566644 677889999999975
No 216
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=65.04 E-value=2.1 Score=38.24 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=18.3
Q ss_pred HHHhccccCeeEeeccCcCCCceeE
Q psy37 44 VDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 44 v~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
|..+++|.+. ++..++||||||..
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 4556778664 56779999999986
No 217
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=64.90 E-value=1.5 Score=40.68 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=19.4
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.+..++. +..++..|+.|||||+++..
T Consensus 197 Av~~~~~--~~~~~I~G~pGTGKTt~i~~ 223 (574)
T 3e1s_A 197 VLDQLAG--HRLVVLTGGPGTGKSTTTKA 223 (574)
T ss_dssp HHHHHTT--CSEEEEECCTTSCHHHHHHH
T ss_pred HHHHHHh--CCEEEEEcCCCCCHHHHHHH
Confidence 4444444 35677899999999998743
No 218
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=64.68 E-value=1.4 Score=37.42 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=14.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|...|++|||||.++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46667799999999987
No 219
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=64.53 E-value=1.1 Score=34.63 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.8
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
+.-.|+.|||||..+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556899999999876
No 220
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=64.41 E-value=4 Score=39.34 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=18.6
Q ss_pred cccCeeEeeccCcCCCceeE
Q psy37 49 EGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~T 68 (279)
++.|.||+.-|.+|||||.+
T Consensus 137 ~~~nQsIiiSGESGAGKTe~ 156 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTEN 156 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEcCCCCCCceeh
Confidence 69999999999999999964
No 221
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=64.40 E-value=3.9 Score=39.78 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=15.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+-+|++|+|||+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999865
No 222
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=64.36 E-value=4 Score=39.27 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.3
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++.|.||+.-|.+|||||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 799999999999999999854
No 223
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=64.29 E-value=2.1 Score=32.76 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=13.6
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|.+|||||..-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999753
No 224
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=64.25 E-value=4.4 Score=31.59 Aligned_cols=20 Identities=25% Similarity=0.076 Sum_probs=16.0
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
.....|...|++|||||..+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 33457888999999999875
No 225
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=64.05 E-value=1.2 Score=36.93 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=15.6
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
++-++...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3557888999999999865
No 226
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.01 E-value=2.4 Score=38.63 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=15.8
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...++.||++|+|||++.
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 358999999999999876
No 227
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=63.58 E-value=3 Score=41.76 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.2
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++.|.||+.-|.+|||||.+.
T Consensus 153 ~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCccchH
Confidence 699999999999999999753
No 228
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=63.55 E-value=2.8 Score=35.54 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=17.6
Q ss_pred HHHhccccCeeEeeccCcCCCceeEe
Q psy37 44 VDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 44 v~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+..+++|. ..++..++||||||.+.
T Consensus 37 i~~~~~~~-~~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDE-YNIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTC-SEEEEECCSSSSHHHHH
T ss_pred HHHHhCCC-CCEEEECCCCChHHHHH
Confidence 44455553 34677899999999874
No 229
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=63.41 E-value=4.4 Score=35.13 Aligned_cols=17 Identities=35% Similarity=0.632 Sum_probs=15.0
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|...|++|||||.|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 47888999999999987
No 230
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=63.35 E-value=3.2 Score=37.75 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=14.8
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|...|++|||||.++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 36788899999999987
No 231
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=63.34 E-value=2.4 Score=35.69 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=15.0
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
..|+..|++|+|||.|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 467778999999999874
No 232
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=63.24 E-value=1.9 Score=41.69 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.5
Q ss_pred eeEeeccCcCCCceeEecC
Q psy37 53 ACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~G 71 (279)
..++..|+.|||||+|+..
T Consensus 372 ~~~lI~GppGTGKT~ti~~ 390 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSAT 390 (800)
T ss_dssp SEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHH
Confidence 3567899999999998743
No 233
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=62.99 E-value=1.1 Score=39.91 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=17.0
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
.+..++.+|+||||||.++
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 4678999999999999987
No 234
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=62.98 E-value=5.2 Score=35.67 Aligned_cols=19 Identities=37% Similarity=0.359 Sum_probs=15.5
Q ss_pred CeeEeeccCcCCCceeEec
Q psy37 52 NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~ 70 (279)
...|+..|++|+|||.|+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp SEEEEECCCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4567778999999999863
No 235
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=62.93 E-value=1.4 Score=34.76 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=13.3
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999876
No 236
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=62.76 E-value=1.3 Score=35.84 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=16.8
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
...++-+|+.|+|||..+++
T Consensus 12 G~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHH
Confidence 35678899999999998876
No 237
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=62.75 E-value=1.5 Score=41.40 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=17.5
Q ss_pred cCeeEeeccCcCCCceeEecC
Q psy37 51 YNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.+..++..|..|||||+||..
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~~ 34 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVITN 34 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHHH
Confidence 366788889999999999963
No 238
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=62.72 E-value=3.3 Score=40.10 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=35.0
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHH-hcc----ccCeeEeeccCcCCCceeEe
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDA-AFE----GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~----G~n~~v~~yG~tgSGKT~Tl 69 (279)
..||.+.+.+..-+++.+.+..|+... ++. .....|+-||++|+|||..+
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 567888887777778777776555432 222 22346999999999999865
No 239
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=62.65 E-value=3.4 Score=39.82 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 27 PQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 27 ~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+..-|.++...+. ...-.+....++..|+||||||...
T Consensus 368 ~lt~~Q~~ai~~I~----~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 368 KLTNAQKRAHQEIR----NDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp CCCHHHHHHHHHHH----HHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred CCCHHHHHHHHHHH----hhccccCCCcEEEEcCCCCCHHHHH
Confidence 34445655544443 3334555567889999999999764
No 240
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=62.65 E-value=4.5 Score=39.04 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.1
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++.|.||+.-|.+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 689999999999999999753
No 241
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=62.57 E-value=1.7 Score=34.75 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=9.5
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|...|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999875
No 242
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=62.54 E-value=1.4 Score=33.96 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.6
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+...|++|||||.++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5677899999999865
No 243
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=62.49 E-value=4.1 Score=39.54 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.3
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++.|.||+.-|.+|||||.+-
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 699999999999999999763
No 244
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=62.39 E-value=1.3 Score=35.87 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=16.9
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
...|+..|..|+||||++..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHH
Confidence 35689999999999999754
No 245
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=62.33 E-value=3 Score=33.31 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=20.4
Q ss_pred HHHHHhccc-c--CeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEG-Y--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G-~--n~~v~~yG~tgSGKT~Tl 69 (279)
+-+|.++.| + ...++.+|++|+|||..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 345677643 3 346788999999999874
No 246
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=62.32 E-value=1 Score=35.06 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.5
Q ss_pred eEeeccCcCCCceeEecC
Q psy37 54 CVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~G 71 (279)
.++-+|+.|+|||..+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 567899999999999855
No 247
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=62.04 E-value=4.3 Score=38.83 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=15.3
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
+.++.+|++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 58999999999999875
No 248
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=61.82 E-value=5 Score=40.61 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.3
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++.|.||+.-|.+|||||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 799999999999999999754
No 249
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=61.17 E-value=2.4 Score=38.78 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=18.0
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+|..+++|.++ +..++||||||.+.
T Consensus 33 ~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 45566788764 45579999999743
No 250
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=61.14 E-value=4.5 Score=40.18 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.3
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++.|.||+.-|.+|||||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 799999999999999999763
No 251
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=61.07 E-value=2.3 Score=34.77 Aligned_cols=15 Identities=47% Similarity=0.485 Sum_probs=12.9
Q ss_pred eEeeccCcCCCceeE
Q psy37 54 CVFAYGQTGSGKTFT 68 (279)
Q Consensus 54 ~v~~yG~tgSGKT~T 68 (279)
.|+..|++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478899999999974
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=60.86 E-value=1.4 Score=35.15 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.0
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+...|++|||||..+
T Consensus 25 ~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLI 40 (218)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999865
No 253
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=60.43 E-value=3.6 Score=40.82 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=17.7
Q ss_pred HHHHhccccCeeEeeccCcCCCcee
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTF 67 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~ 67 (279)
+|..+++|. .++..++||||||.
T Consensus 47 aI~~il~g~--~vlv~apTGsGKTl 69 (997)
T 4a4z_A 47 AVYHLEQGD--SVFVAAHTSAGKTV 69 (997)
T ss_dssp HHHHHHTTC--EEEEECCTTSCSHH
T ss_pred HHHHHHcCC--CEEEEECCCCcHHH
Confidence 455667775 47889999999995
No 254
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=60.09 E-value=3.9 Score=40.81 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=18.0
Q ss_pred HHHHHhccccCeeEeeccCcCCCcee
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTF 67 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~ 67 (279)
.++..+++|.| ++..++||||||.
T Consensus 63 ~ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 63 MWAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHHhCCC--EEEEcCCCCCHHH
Confidence 34556677865 6778999999994
No 255
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=60.02 E-value=1.4 Score=38.27 Aligned_cols=20 Identities=40% Similarity=0.414 Sum_probs=14.7
Q ss_pred cccCeeEeeccCcCCCceeEec
Q psy37 49 EGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
.|.. +...|++|||||.++-
T Consensus 174 ~G~~--i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 174 LERV--IVVAGETGSGKTTLMK 193 (361)
T ss_dssp TTCC--EEEEESSSSCHHHHHH
T ss_pred cCCE--EEEECCCCCCHHHHHH
Confidence 5554 4455999999999763
No 256
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=59.95 E-value=2.7 Score=32.73 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=13.9
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|.+|||||...
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6888999999999864
No 257
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=59.93 E-value=1.7 Score=34.98 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=18.5
Q ss_pred HHHhcc-cc--CeeEeeccCcCCCceeEec
Q psy37 44 VDAAFE-GY--NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 44 v~~v~~-G~--n~~v~~yG~tgSGKT~Tl~ 70 (279)
++.++. |+ ...+.-.|++|||||..+.
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHH
Confidence 444553 33 2357779999999999774
No 258
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=59.63 E-value=2.5 Score=33.04 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=13.4
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|++|||||..+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999854
No 259
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=59.47 E-value=6.8 Score=34.99 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=16.8
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
...|+..|.+|+|||.|+..
T Consensus 100 p~vIlivG~~G~GKTTt~~k 119 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAK 119 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHH
Confidence 46788899999999998743
No 260
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=58.93 E-value=3 Score=31.17 Aligned_cols=16 Identities=13% Similarity=-0.002 Sum_probs=13.4
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|..|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999764
No 261
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=58.93 E-value=1.5 Score=37.65 Aligned_cols=16 Identities=50% Similarity=0.621 Sum_probs=13.6
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+...|++|||||.++
T Consensus 173 ~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp CEEEEESTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999876
No 262
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=58.70 E-value=5.5 Score=37.55 Aligned_cols=40 Identities=35% Similarity=0.414 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 27 PQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 27 ~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
.+...|.+-++.. ++.+-.|... ....|.||||||+||..
T Consensus 8 ~~~~~q~~ai~~l----~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 8 SPKGDQPKAIAGL----VEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCTTHHHHHHHH----HHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCChHHHHHH----HHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 7888888876654 4444556433 34569999999999963
No 263
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=58.60 E-value=2.7 Score=32.23 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=14.5
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|...|++|||||..+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788999999999875
No 264
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=58.48 E-value=7.6 Score=32.60 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=13.9
Q ss_pred eEeeccCcCCCceeEec
Q psy37 54 CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~ 70 (279)
.|+..|..|+|||.++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999998863
No 265
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=58.16 E-value=1.4 Score=34.52 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.8
Q ss_pred eEeeccCcCCCceeEecC
Q psy37 54 CVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~G 71 (279)
.++-||+.|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 678899999999988866
No 266
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=58.14 E-value=2.8 Score=31.53 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=13.8
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|...|++|||||...
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999864
No 267
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=57.34 E-value=5.1 Score=19.63 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy37 260 TRIIRELHDEITKLKAMLTS 279 (279)
Q Consensus 260 ~~~~~~l~~~~~~Lk~~l~~ 279 (279)
...+..|.+++.+|+..|.|
T Consensus 7 ykeledlqerlrklrkklrs 26 (27)
T 3twe_A 7 YKELEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34566777888888887765
No 268
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=57.23 E-value=3.6 Score=32.63 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=16.0
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+-....|+-.|+||+|||...
T Consensus 31 ~~~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 31 DIYGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp EETTEEEEEECCCTTTTHHHH
T ss_pred EECCEEEEEECCCCCCHHHHH
Confidence 334556889999999998654
No 269
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=57.09 E-value=9.3 Score=33.08 Aligned_cols=21 Identities=38% Similarity=0.768 Sum_probs=18.3
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.|.-..|+..|+.|+|||...
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 677778999999999999865
No 270
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=57.05 E-value=5.5 Score=34.14 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=22.4
Q ss_pred HHHHHhcc-cc--CeeEeeccCcCCCceeEec
Q psy37 42 DVVDAAFE-GY--NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 42 ~lv~~v~~-G~--n~~v~~yG~tgSGKT~Tl~ 70 (279)
+-+|.++. |+ ...+..+|++|||||..+.
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 56888886 44 3568899999999998653
No 271
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=56.87 E-value=3 Score=31.79 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.2
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|..|||||...
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35888999999999854
No 272
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=56.77 E-value=3.3 Score=32.09 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.7
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|...|++|||||..+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999865
No 273
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=56.75 E-value=2.6 Score=32.34 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=13.9
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|..|||||+..
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999863
No 274
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=56.65 E-value=2.4 Score=32.46 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|..|||||...
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999854
No 275
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=56.63 E-value=4.6 Score=38.91 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=19.7
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+|..+++|.| ++..++||||||.+.
T Consensus 255 ~~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 255 ELAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 35566678866 667789999999764
No 276
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=56.62 E-value=4.6 Score=35.40 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=19.5
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEec
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
..+..+++| .++..++||+|||.+..
T Consensus 16 ~~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 16 VIYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 345666777 56667899999998764
No 277
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=56.28 E-value=1.9 Score=33.74 Aligned_cols=16 Identities=44% Similarity=0.613 Sum_probs=13.5
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+...|++|+|||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 4667899999999876
No 278
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=56.18 E-value=7 Score=32.68 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=22.3
Q ss_pred HHHHHHhHHHHHHHhc--cccCeeEeeccCcCCCceeEe
Q psy37 33 EQVFNDLGMDVVDAAF--EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 33 ~~vy~~~~~~lv~~v~--~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++++..++..+..... .+....|.-.|++|||||...
T Consensus 10 ~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 10 DYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHH
Confidence 3455555433333212 244456777899999999865
No 279
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=55.65 E-value=2.1 Score=34.26 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=13.5
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+...|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999865
No 280
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=55.25 E-value=4.8 Score=31.25 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=15.6
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
.....|...|++|||||..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34456778899999999764
No 281
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=55.17 E-value=3.4 Score=32.22 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=13.2
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|++|+|||..+
T Consensus 4 IVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999866
No 282
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=54.89 E-value=2.9 Score=32.94 Aligned_cols=17 Identities=41% Similarity=0.667 Sum_probs=14.1
Q ss_pred eEeeccCcCCCceeEec
Q psy37 54 CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~ 70 (279)
.++-.|..|||||+.+.
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 46788999999999753
No 283
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=54.84 E-value=3.2 Score=32.26 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=11.6
Q ss_pred EeeccCcCCCcee
Q psy37 55 VFAYGQTGSGKTF 67 (279)
Q Consensus 55 v~~yG~tgSGKT~ 67 (279)
++.+|.+|||||.
T Consensus 2 ilV~Gg~~SGKS~ 14 (180)
T 1c9k_A 2 ILVTGGARSGKSR 14 (180)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCCcHHH
Confidence 6889999999985
No 284
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=54.52 E-value=3.9 Score=36.26 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=13.8
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999999873
No 285
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=54.50 E-value=3.8 Score=30.89 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.2
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|+.|||||..+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 46788899999999864
No 286
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=54.49 E-value=3.8 Score=35.28 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=13.9
Q ss_pred eeEeeccCcCCCceeE
Q psy37 53 ACVFAYGQTGSGKTFT 68 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~T 68 (279)
-.|+..|+||||||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3689999999999974
No 287
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=54.34 E-value=3.5 Score=39.15 Aligned_cols=20 Identities=35% Similarity=0.383 Sum_probs=15.4
Q ss_pred ccccCeeEeeccCcCCCceeEe
Q psy37 48 FEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 48 ~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+| ..++..|+||||||...
T Consensus 37 ~~~--~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 37 LEG--KNALISIPTASGKTLIA 56 (720)
T ss_dssp GGT--CEEEEECCGGGCHHHHH
T ss_pred cCC--CcEEEEcCCccHHHHHH
Confidence 454 45888999999999654
No 288
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=54.21 E-value=5.8 Score=34.11 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=21.8
Q ss_pred HHHHHhccc---cCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEG---YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G---~n~~v~~yG~tgSGKT~Tl 69 (279)
+-+|.++.| ....+..+|++|||||..+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 667888864 3457889999999999754
No 289
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=54.06 E-value=4.1 Score=36.68 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=17.5
Q ss_pred HHHhccccCeeEeeccCcCCCceeEec
Q psy37 44 VDAAFEGYNACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 44 v~~v~~G~n~~v~~yG~tgSGKT~Tl~ 70 (279)
|+.++.|. .++..|+||||||.+..
T Consensus 122 i~~~~~~~--~~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 122 VFEGLVNR--RRILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHHHS--EEEEECCSTTTHHHHHH
T ss_pred HHHHHhcC--CcEEEeCCCCCHHHHHH
Confidence 44444553 35778999999999854
No 290
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=53.79 E-value=6.1 Score=33.19 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=15.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..++.+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 68889999999999876
No 291
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=53.69 E-value=3.8 Score=32.72 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=20.1
Q ss_pred HHHHHhcc-cc--CeeEeeccCcCCCceeE
Q psy37 42 DVVDAAFE-GY--NACVFAYGQTGSGKTFT 68 (279)
Q Consensus 42 ~lv~~v~~-G~--n~~v~~yG~tgSGKT~T 68 (279)
|-+|.++. |+ ...++.+|.+|+|||.-
T Consensus 17 ~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECCTTSSHHHH
T ss_pred HHHHHhhcCCCCCCeEEEEEeCCCCCHHHH
Confidence 44677776 43 45688899999999964
No 292
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=53.55 E-value=6.3 Score=29.53 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=20.8
Q ss_pred HHHHHhcc-ccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFE-GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~-G~n~~v~~yG~tgSGKT~Tl 69 (279)
.++..++. -...-|+..|.+|+|||..+
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 34444555 56678999999999999765
No 293
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=53.51 E-value=5 Score=40.31 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=18.0
Q ss_pred HHHHhccccCeeEeeccCcCCCceeE
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
+|..+.+|.+ ++..|+||||||..
T Consensus 192 AI~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 192 AISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHH
Confidence 4455577754 68899999999964
No 294
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=53.49 E-value=3.8 Score=33.76 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=17.4
Q ss_pred ccccCeeEeeccCcCCCceeEe
Q psy37 48 FEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 48 ~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
-.|+...|+..|.+|+|||..+
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHH
T ss_pred cCccEEEEEEECCCCCCHHHHH
Confidence 3688899999999999999755
No 295
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=53.35 E-value=3.8 Score=38.80 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 29 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 29 ~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
..-|.+++.. +.+|. .++..|+||||||...
T Consensus 27 ~~~Q~~~i~~--------i~~~~--~~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 27 FPPQAEAVEK--------VFSGK--NLLLAMPTAAGKTLLA 57 (702)
T ss_dssp CCCCHHHHHH--------HTTCS--CEEEECSSHHHHHHHH
T ss_pred CHHHHHHHHH--------HhCCC--cEEEEcCCccHHHHHH
Confidence 4556666554 34554 4678899999999764
No 296
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=53.34 E-value=6.4 Score=33.18 Aligned_cols=29 Identities=31% Similarity=0.360 Sum_probs=22.7
Q ss_pred HHHHHHhcc-cc--CeeEeeccCcCCCceeEe
Q psy37 41 MDVVDAAFE-GY--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 41 ~~lv~~v~~-G~--n~~v~~yG~tgSGKT~Tl 69 (279)
-+-+|.++. |+ ...++.||++|+|||...
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 367888885 33 357899999999999865
No 297
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=53.33 E-value=4.7 Score=29.92 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=13.3
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567999999999865
No 298
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=53.18 E-value=3.7 Score=34.91 Aligned_cols=17 Identities=41% Similarity=0.557 Sum_probs=13.9
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
-.|+..|+||||||...
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 45788999999999743
No 299
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=53.12 E-value=3.2 Score=39.32 Aligned_cols=20 Identities=40% Similarity=0.654 Sum_probs=15.5
Q ss_pred hccccCeeEeeccCcCCCceeE
Q psy37 47 AFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 47 v~~G~n~~v~~yG~tgSGKT~T 68 (279)
.++| -.|+..|+||||||+.
T Consensus 152 ~l~r--k~vlv~apTGSGKT~~ 171 (677)
T 3rc3_A 152 AMQR--KIIFHSGPTNSGKTYH 171 (677)
T ss_dssp TSCC--EEEEEECCTTSSHHHH
T ss_pred hcCC--CEEEEEcCCCCCHHHH
Confidence 3455 3678899999999983
No 300
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=53.01 E-value=3.3 Score=34.96 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=15.9
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
..++.+|+.|+|||..+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 589999999999999773
No 301
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=52.98 E-value=2.5 Score=35.78 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=15.0
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|++|+|||.|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46888999999999987
No 302
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=52.81 E-value=5.9 Score=33.59 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=21.8
Q ss_pred HHHHHhccc-c--CeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEG-Y--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G-~--n~~v~~yG~tgSGKT~Tl 69 (279)
+-+|.++.| + ...++.+|++|+|||..+
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 678888853 3 346889999999999765
No 303
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=52.66 E-value=6 Score=39.70 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=19.0
Q ss_pred HHHHHhccccCeeEeeccCcCCCcee
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTF 67 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~ 67 (279)
..+..+++|.| ++..++||||||.
T Consensus 85 ~ai~~il~g~d--vlv~ApTGSGKTl 108 (1104)
T 4ddu_A 85 LWAKRIVQGKS--FTMVAPTGVGKTT 108 (1104)
T ss_dssp HHHHHHTTTCC--EEECCSTTCCHHH
T ss_pred HHHHHHHcCCC--EEEEeCCCCcHHH
Confidence 35666778865 6788899999998
No 304
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=52.65 E-value=4.2 Score=30.91 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=13.6
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|..|||||...
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999753
No 305
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=52.51 E-value=2.4 Score=40.49 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=16.7
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
++.++..|..|||||++|..
T Consensus 24 ~g~~lV~AgAGSGKT~vL~~ 43 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVLTH 43 (724)
T ss_dssp SSCEEEEECTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHH
Confidence 56677889999999999854
No 306
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=52.19 E-value=4 Score=31.00 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=13.7
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
..+-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 6678999999999865
No 307
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=52.16 E-value=5.1 Score=34.21 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=13.8
Q ss_pred eeEeeccCcCCCceeE
Q psy37 53 ACVFAYGQTGSGKTFT 68 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~T 68 (279)
-.|+..|+||||||..
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4688999999999974
No 308
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=52.12 E-value=2.7 Score=31.80 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=14.1
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..+.-.|+.|||||..+
T Consensus 34 e~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46777899999999865
No 309
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=51.86 E-value=6 Score=38.92 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=19.7
Q ss_pred HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+|..+++|.| ++..++||||||.+.
T Consensus 255 ~ai~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 255 ELAQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCC--EEEEeCCCchHHHHH
Confidence 35566678876 566789999999874
No 310
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=51.80 E-value=4.1 Score=31.07 Aligned_cols=17 Identities=35% Similarity=0.555 Sum_probs=13.9
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|..|||||...
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999753
No 311
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=51.72 E-value=4 Score=34.77 Aligned_cols=16 Identities=44% Similarity=0.339 Sum_probs=13.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|+||||||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 5677899999999754
No 312
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=51.70 E-value=4.2 Score=32.20 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=11.5
Q ss_pred EeeccCcCCCcee
Q psy37 55 VFAYGQTGSGKTF 67 (279)
Q Consensus 55 v~~yG~tgSGKT~ 67 (279)
|+.+|+.||||+.
T Consensus 3 Iil~GpPGsGKgT 15 (206)
T 3sr0_A 3 LVFLGPPGAGKGT 15 (206)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6788999999975
No 313
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=51.62 E-value=4.7 Score=35.85 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=15.3
Q ss_pred ccccCeeEeeccCcCCCceeEe
Q psy37 48 FEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 48 ~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+|.| ++..|+||||||...
T Consensus 6 ~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 6 KKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp STTCE--EEECCCTTSSTTTTH
T ss_pred hCCCC--EEEEcCCCCCHHHHH
Confidence 44544 678899999999973
No 314
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=51.61 E-value=4.2 Score=30.46 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.3
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|..|||||...
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999753
No 315
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=51.54 E-value=4.2 Score=31.58 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=14.8
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...|+..|..|||||...
T Consensus 18 ~~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SSCEEEECSTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346888999999999854
No 316
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=51.20 E-value=2.8 Score=33.89 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=13.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4567899999999765
No 317
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=51.08 E-value=5.1 Score=39.82 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=16.9
Q ss_pred HHHhccccCeeEeeccCcCCCceeE
Q psy37 44 VDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 44 v~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
|..+.+|.+ ++..++||||||..
T Consensus 95 i~~l~~g~~--vLV~apTGSGKTlv 117 (1010)
T 2xgj_A 95 ISCIDRGES--VLVSAHTSAGKTVV 117 (1010)
T ss_dssp HHHHHHTCE--EEEECCTTSCHHHH
T ss_pred HHHHHcCCC--EEEECCCCCChHHH
Confidence 334455654 78889999999975
No 318
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=50.93 E-value=3.9 Score=31.12 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.5
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|..|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999754
No 319
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=50.81 E-value=5.3 Score=35.69 Aligned_cols=15 Identities=33% Similarity=0.226 Sum_probs=13.1
Q ss_pred eEeeccCcCCCceeE
Q psy37 54 CVFAYGQTGSGKTFT 68 (279)
Q Consensus 54 ~v~~yG~tgSGKT~T 68 (279)
.++..++||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 567789999999987
No 320
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=50.63 E-value=3.4 Score=31.74 Aligned_cols=16 Identities=38% Similarity=0.575 Sum_probs=13.6
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|..|||||+..
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999753
No 321
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=50.59 E-value=9.9 Score=33.78 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=15.2
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
..|+..|++|+|||++..
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368889999999999774
No 322
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=50.26 E-value=3.1 Score=38.26 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=15.7
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
-...++.+|++|+|||+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3447889999999999865
No 323
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=50.26 E-value=4.5 Score=30.74 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=12.9
Q ss_pred eEeeccCcCCCceeE
Q psy37 54 CVFAYGQTGSGKTFT 68 (279)
Q Consensus 54 ~v~~yG~tgSGKT~T 68 (279)
.|+..|..|||||..
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 477889999999875
No 324
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=50.24 E-value=4.8 Score=30.47 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=10.2
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|..|||||...
T Consensus 6 ~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CEEEEECCC----CHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36888999999999754
No 325
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=50.19 E-value=4.1 Score=33.28 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.5
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|..|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 46889999999999864
No 326
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=50.15 E-value=9.7 Score=33.19 Aligned_cols=17 Identities=29% Similarity=0.200 Sum_probs=14.3
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..+..+|++|||||..+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 47788999999999855
No 327
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=49.90 E-value=3 Score=32.01 Aligned_cols=17 Identities=35% Similarity=0.212 Sum_probs=13.7
Q ss_pred eEeeccCcCCCceeEec
Q psy37 54 CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~ 70 (279)
.|...|.+|||||..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~ 22 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLME 22 (169)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46677999999998763
No 328
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=49.88 E-value=4.5 Score=32.35 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=12.2
Q ss_pred eEeeccCcCCCcee
Q psy37 54 CVFAYGQTGSGKTF 67 (279)
Q Consensus 54 ~v~~yG~tgSGKT~ 67 (279)
.|+.+|+.||||+.
T Consensus 31 iI~llGpPGsGKgT 44 (217)
T 3umf_A 31 VIFVLGGPGSGKGT 44 (217)
T ss_dssp EEEEECCTTCCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57889999999976
No 329
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=49.79 E-value=4.6 Score=30.49 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=13.1
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|+.|||||..-
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4777899999999753
No 330
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=49.61 E-value=4 Score=32.22 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=13.1
Q ss_pred eEeeccCcCCCceeE
Q psy37 54 CVFAYGQTGSGKTFT 68 (279)
Q Consensus 54 ~v~~yG~tgSGKT~T 68 (279)
.|+..|..|||||..
T Consensus 6 ~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQ 20 (220)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588899999999975
No 331
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=49.42 E-value=4.7 Score=31.55 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.5
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999998753
No 332
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=49.42 E-value=5.1 Score=31.12 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=13.8
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|...|+.|||||..+
T Consensus 30 ~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45777899999999864
No 333
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=49.40 E-value=9.8 Score=38.38 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=19.0
Q ss_pred HHHhccccCeeEeeccCcCCCceeE
Q psy37 44 VDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 44 v~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
+...-.|...-++..|+||||||..
T Consensus 616 l~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 616 LSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHhcCCcCcEEEECCCCCCHHHH
Confidence 3334457766889999999999965
No 334
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=49.21 E-value=5.2 Score=31.48 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=13.5
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|++|+|||..+
T Consensus 21 ~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 21 TLVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5667899999999865
No 335
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=48.88 E-value=3 Score=38.57 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=16.0
Q ss_pred CeeEeeccCcCCCceeEec
Q psy37 52 NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~ 70 (279)
..-++..|.||||||..|.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~ 232 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVN 232 (574)
T ss_dssp SCCEEEECCTTSSHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHH
Confidence 3578999999999999764
No 336
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=48.43 E-value=9 Score=32.52 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=22.5
Q ss_pred HHHHHHHhHHHHHHHhcccc-CeeEeeccCcCCCceeEe
Q psy37 32 QEQVFNDLGMDVVDAAFEGY-NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 32 q~~vy~~~~~~lv~~v~~G~-n~~v~~yG~tgSGKT~Tl 69 (279)
|+++++.. ...+-+|. ...++.||+.|+|||.+.
T Consensus 7 ~~~~~~~l----~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 7 LRPDFEKL----VASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp GHHHHHHH----HHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred hHHHHHHH----HHHHHcCCcceeEEEECCCCchHHHHH
Confidence 44554433 33334554 446999999999999865
No 337
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=48.39 E-value=5.3 Score=34.17 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=14.5
Q ss_pred eeEeeccCcCCCceeEec
Q psy37 53 ACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~ 70 (279)
..++.+|++|+|||+...
T Consensus 124 sviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp EEEEEECSCSSSHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHH
Confidence 346889999999998653
No 338
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=48.22 E-value=5.1 Score=29.86 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.1
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|..|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999753
No 339
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=48.18 E-value=4.3 Score=32.44 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=14.3
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|..|||||+..
T Consensus 17 ~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999854
No 340
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=47.79 E-value=6.2 Score=30.36 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=15.7
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
+..-.|.-.|++|||||...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHH
T ss_pred cCceEEEEECCCCCCHHHHH
Confidence 44557888999999999753
No 341
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=47.71 E-value=7.5 Score=32.73 Aligned_cols=26 Identities=8% Similarity=-0.125 Sum_probs=19.7
Q ss_pred HHHhccccCeeEeeccCcCCCceeEe
Q psy37 44 VDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 44 v~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
-..+-+|..-.++-||+.|+|||.+.
T Consensus 10 ~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 10 KRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 33344566668999999999998765
No 342
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=47.69 E-value=6.6 Score=37.15 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=14.8
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
+..++..|+||||||...
T Consensus 46 ~~~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIA 63 (715)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCcEEEEcCCCCcHHHHH
Confidence 356788899999999874
No 343
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=47.65 E-value=7.8 Score=32.54 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=15.3
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
+....|--.|++|||||.++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 33356777899999999876
No 344
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=47.35 E-value=4.5 Score=36.19 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=14.8
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+.+|++|+|||+..
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46999999999999864
No 345
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=47.31 E-value=5.5 Score=34.44 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.2
Q ss_pred hccccCeeEeeccCcCCCceeEe
Q psy37 47 AFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 47 v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+..|++..|+..|.+|+|||..+
T Consensus 32 ~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 32 VKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHCCEECEEECCCTTSCHHHHH
T ss_pred ecCCCCEEEEEEcCCCCCHHHHH
Confidence 46799999999999999999754
No 346
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=47.28 E-value=5.4 Score=30.87 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=14.1
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
-.|+..|..|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46888999999999753
No 347
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=47.13 E-value=5.4 Score=31.25 Aligned_cols=15 Identities=27% Similarity=0.363 Sum_probs=12.5
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999998754
No 348
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=46.77 E-value=5 Score=31.83 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=13.7
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|..|||||...
T Consensus 9 ~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999854
No 349
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=46.56 E-value=8.5 Score=33.12 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=22.3
Q ss_pred HHHHHHhcc--cc--CeeEeeccCcCCCceeEe
Q psy37 41 MDVVDAAFE--GY--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 41 ~~lv~~v~~--G~--n~~v~~yG~tgSGKT~Tl 69 (279)
.+-+|.++. |+ ...++.||+.|||||..+
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 366788887 43 346888999999999864
No 350
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=46.28 E-value=6 Score=31.81 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.7
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|+.|||||..+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 56888999999999865
No 351
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=45.86 E-value=3.6 Score=37.56 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=14.7
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..++..|.||||||..|
T Consensus 168 pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGV 184 (512)
T ss_dssp CSEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56889999999999864
No 352
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=45.85 E-value=12 Score=35.10 Aligned_cols=47 Identities=28% Similarity=0.379 Sum_probs=32.5
Q ss_pred eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G 71 (279)
|..-.-|.|...|.+-++.+ ++.+-.|... ....|.||||||++|..
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~l----~~~~~~~~~~-~~l~g~~gs~k~~~~a~ 51 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEKL----VKGIQEGKKH-QTLLGATGTGKTFTVSN 51 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHHH----HHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred ceeecCCCCCCCCHHHHHHH----HHHHhcCCCc-EEEECcCCcHHHHHHHH
Confidence 44445568999999887654 4444555432 34569999999999964
No 353
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=45.74 E-value=5.4 Score=30.31 Aligned_cols=16 Identities=44% Similarity=0.638 Sum_probs=13.5
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|..|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999853
No 354
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=45.64 E-value=5.9 Score=28.85 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.5
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999765
No 355
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=45.27 E-value=7.1 Score=37.53 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=15.5
Q ss_pred HhccccCeeEeeccCcCCCceeE
Q psy37 46 AAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 46 ~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
.++.+. ..++..|+||||||..
T Consensus 104 ~~l~~~-~~vii~gpTGSGKTtl 125 (773)
T 2xau_A 104 KLYQNN-QIMVFVGETGSGKTTQ 125 (773)
T ss_dssp HHHHHC-SEEEEECCTTSSHHHH
T ss_pred HHHhCC-CeEEEECCCCCCHHHH
Confidence 344432 3577789999999983
No 356
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=45.19 E-value=4 Score=34.74 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=14.2
Q ss_pred eEeeccCcCCCceeEec
Q psy37 54 CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~ 70 (279)
.|...|++|+|||.|+.
T Consensus 107 vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57777999999999873
No 357
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=45.17 E-value=3.9 Score=31.44 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=13.7
Q ss_pred eEeeccCcCCCceeEec
Q psy37 54 CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~ 70 (279)
.+...|.+|||||..+.
T Consensus 8 ~i~i~G~sGsGKTTl~~ 24 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLK 24 (174)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 46678999999998763
No 358
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=45.15 E-value=6.5 Score=30.39 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=16.3
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
......|+..|..|||||...
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 344457889999999999853
No 359
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=44.95 E-value=6.5 Score=33.80 Aligned_cols=15 Identities=40% Similarity=0.412 Sum_probs=13.1
Q ss_pred eEeeccCcCCCceeE
Q psy37 54 CVFAYGQTGSGKTFT 68 (279)
Q Consensus 54 ~v~~yG~tgSGKT~T 68 (279)
.|+..|+||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 678899999999974
No 360
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=44.88 E-value=5.7 Score=28.92 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=13.9
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
-|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999865
No 361
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=44.81 E-value=6.1 Score=30.18 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=14.0
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
-.|+..|..|||||...
T Consensus 10 ~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36888899999999853
No 362
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=44.69 E-value=6.2 Score=30.54 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=14.3
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|..|||||...
T Consensus 5 ~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 35888999999999864
No 363
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=44.61 E-value=4.1 Score=34.55 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=14.5
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...|.-.|++|||||.++
T Consensus 90 g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCchHHHHH
Confidence 346667799999999876
No 364
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=44.59 E-value=5.7 Score=31.32 Aligned_cols=16 Identities=31% Similarity=0.299 Sum_probs=13.5
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|..|||||...
T Consensus 7 ~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 7 KVMISGAPASGKGTQC 22 (222)
T ss_dssp CEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998754
No 365
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=44.53 E-value=3.8 Score=35.54 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=13.3
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||.+|
T Consensus 32 ~~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLL 47 (359)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCchHHHHH
Confidence 4566899999999875
No 366
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=44.43 E-value=23 Score=20.44 Aligned_cols=17 Identities=24% Similarity=0.556 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy37 261 RIIRELHDEITKLKAML 277 (279)
Q Consensus 261 ~~~~~l~~~~~~Lk~~l 277 (279)
.++++.++|+.++|.++
T Consensus 15 EIL~E~RkElqK~K~EI 31 (45)
T 1use_A 15 ELLEEVKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788999999999875
No 367
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=44.34 E-value=6.3 Score=29.92 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=15.7
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
....|+..|.+|+|||..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3457999999999999765
No 368
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=44.16 E-value=7.8 Score=29.49 Aligned_cols=18 Identities=39% Similarity=0.486 Sum_probs=14.7
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...|+..|..|||||...
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 356788899999999864
No 369
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=44.14 E-value=4.3 Score=35.24 Aligned_cols=16 Identities=44% Similarity=0.607 Sum_probs=13.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||.+|
T Consensus 31 ~~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTL 46 (359)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEEcCCCchHHHHH
Confidence 4556799999999976
No 370
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=44.09 E-value=4.2 Score=33.00 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=13.3
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 26 ~~~liG~nGsGKSTLl 41 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFL 41 (240)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999865
No 371
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=44.07 E-value=3.8 Score=32.79 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=12.7
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 32 ~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLL 47 (224)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999765
No 372
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=44.03 E-value=4.3 Score=35.56 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=13.3
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||.+|
T Consensus 31 ~~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLL 46 (381)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCchHHHHH
Confidence 4567899999999976
No 373
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=44.03 E-value=3.9 Score=41.59 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=17.3
Q ss_pred CeeEeeccCcCCCceeEecC
Q psy37 52 NACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl~G 71 (279)
+..++..|..|||||++|..
T Consensus 23 ~~~~~v~a~AGSGKT~vl~~ 42 (1232)
T 3u4q_A 23 GQDILVAAAAGSGKTAVLVE 42 (1232)
T ss_dssp SSCEEEEECTTCCHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHH
Confidence 66888899999999999854
No 374
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=44.01 E-value=6.4 Score=30.24 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=13.1
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|..|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3677899999999754
No 375
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=43.86 E-value=4.3 Score=35.14 Aligned_cols=16 Identities=44% Similarity=0.524 Sum_probs=13.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 43 ~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 43 MVGLLGPSGSGKTTIL 58 (355)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4556799999999976
No 376
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=43.79 E-value=6.5 Score=29.90 Aligned_cols=15 Identities=40% Similarity=0.417 Sum_probs=12.5
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|..|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999753
No 377
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=43.77 E-value=6.6 Score=28.77 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=14.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 6 ~~i~v~G~~~~GKssl~ 22 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMI 22 (168)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 45888999999999865
No 378
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=43.66 E-value=11 Score=31.84 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=35.5
Q ss_pred ccceeecCCCCCCCC-CHHHHHHHhHHHHHHHhc-cccCeeEeeccCc
Q psy37 16 DHSYWSFDPSSPQFA-SQEQVFNDLGMDVVDAAF-EGYNACVFAYGQT 61 (279)
Q Consensus 16 d~~~f~fd~vf~~~~-~q~~vy~~~~~~lv~~v~-~G~n~~v~~yG~t 61 (279)
....|.|++|++.+. +-.+++..-+...++-++ .+.|+.|+..|..
T Consensus 90 ~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~ 137 (333)
T 4etp_B 90 SEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTT 137 (333)
T ss_dssp CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESS
T ss_pred CcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCC
Confidence 345689999997765 455555555568999999 8999999999964
No 379
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=43.41 E-value=4.4 Score=32.76 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=13.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..+
T Consensus 33 ~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLL 48 (237)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999865
No 380
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=43.08 E-value=4.5 Score=33.64 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.0
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..+
T Consensus 36 ~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLF 51 (275)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999876
No 381
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=43.08 E-value=20 Score=24.32 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy37 260 TRIIRELHDEITKLKAMLTS 279 (279)
Q Consensus 260 ~~~~~~l~~~~~~Lk~~l~~ 279 (279)
..+-+.|++||.+||.+|++
T Consensus 67 ~kmKq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 67 RKMKDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34557899999999999975
No 382
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=43.01 E-value=7.5 Score=29.00 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.3
Q ss_pred eeEeeccCcCCCceeE
Q psy37 53 ACVFAYGQTGSGKTFT 68 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~T 68 (279)
..|+..|..|||||..
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3577889999999874
No 383
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=43.01 E-value=4.5 Score=35.23 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=13.3
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 31 ~~~llGpnGsGKSTLL 46 (372)
T 1g29_1 31 FMILLGPSGCGKTTTL 46 (372)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCcHHHHHH
Confidence 4567899999999976
No 384
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=42.97 E-value=4.5 Score=32.74 Aligned_cols=16 Identities=44% Similarity=0.588 Sum_probs=13.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 34 ~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTL 49 (240)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999999876
No 385
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=42.96 E-value=4.5 Score=35.12 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 31 ~~~llGpnGsGKSTLL 46 (362)
T 2it1_A 31 FMALLGPSGSGKSTLL 46 (362)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCchHHHHH
Confidence 4556799999999976
No 386
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=42.89 E-value=6.8 Score=31.61 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=21.6
Q ss_pred CHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeE
Q psy37 31 SQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 31 ~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
+..+...+........ ....-.|+..|+.|||||..
T Consensus 10 ~~~~~~~~~~~~~~~~--~~~~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 10 STIDLLNELKRRYACL--SKPDGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CHHHHHHHHHHHHHHH--TSCCEEEEEECCTTSSHHHH
T ss_pred chHHHHHHHHHHHHhc--cCCCcEEEEECCCCCCHHHH
Confidence 3344444444433221 22345789999999999875
No 387
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=42.81 E-value=4.6 Score=33.09 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=13.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 35 ~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLI 50 (257)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999876
No 388
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=42.60 E-value=7 Score=30.42 Aligned_cols=16 Identities=38% Similarity=0.289 Sum_probs=13.3
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|.-.|++|||||..+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999865
No 389
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=42.43 E-value=4.6 Score=33.20 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=12.8
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 34 ~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFL 49 (262)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999865
No 390
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=42.36 E-value=4.3 Score=32.35 Aligned_cols=15 Identities=40% Similarity=0.426 Sum_probs=12.4
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
+.-.|+.|||||..|
T Consensus 38 ~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLL 52 (214)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999876
No 391
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=42.31 E-value=7.1 Score=29.80 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=12.7
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|...|..|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999765
No 392
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=41.98 E-value=4.8 Score=33.17 Aligned_cols=16 Identities=44% Similarity=0.883 Sum_probs=13.1
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 35 ~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLL 50 (266)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566799999999865
No 393
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=41.93 E-value=8.5 Score=36.29 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=13.9
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
-.++..++||||||+.+
T Consensus 233 ~~vlv~ApTGSGKT~a~ 249 (666)
T 3o8b_A 233 QVAHLHAPTGSGKSTKV 249 (666)
T ss_dssp EEEEEECCTTSCTTTHH
T ss_pred CeEEEEeCCchhHHHHH
Confidence 35788899999999755
No 394
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=41.91 E-value=4.8 Score=35.09 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=13.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 39 ~~~llGpnGsGKSTLL 54 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTL 54 (372)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 4566799999999976
No 395
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=41.86 E-value=4.8 Score=32.77 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 37 ~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLT 52 (247)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999865
No 396
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=41.82 E-value=7.9 Score=30.00 Aligned_cols=16 Identities=44% Similarity=0.347 Sum_probs=13.1
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|.-.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999864
No 397
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=41.80 E-value=15 Score=27.60 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=19.3
Q ss_pred hccccCeeEeeccCcCCCceeEe
Q psy37 47 AFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 47 v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++.-....|+..|..|+|||..+
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~ 33 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTIL 33 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHH
T ss_pred hcCCCccEEEEECCCCCCHHHHH
Confidence 45666788999999999999765
No 398
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=41.74 E-value=7.9 Score=30.42 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.5
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|.-.|++|||||...
T Consensus 7 ~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 7 VITIDGPSGAGKGTLC 22 (227)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999754
No 399
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=41.74 E-value=8 Score=33.44 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=13.6
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
+..+-+|++|+|||-.+
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45678999999999643
No 400
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=41.58 E-value=4.9 Score=33.00 Aligned_cols=16 Identities=38% Similarity=0.455 Sum_probs=13.5
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 48 ~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIA 63 (260)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999865
No 401
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=41.56 E-value=6.7 Score=30.81 Aligned_cols=16 Identities=25% Similarity=0.194 Sum_probs=13.6
Q ss_pred cCeeEeeccCcCCCce
Q psy37 51 YNACVFAYGQTGSGKT 66 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT 66 (279)
---..|-||+.|||||
T Consensus 19 ~g~l~fiyG~MgsGKT 34 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKS 34 (195)
T ss_dssp CCEEEEEEECTTSCHH
T ss_pred ceEEEEEECCCCCcHH
Confidence 3447889999999999
No 402
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=41.50 E-value=4.9 Score=33.19 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.0
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..+
T Consensus 39 ~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLL 54 (266)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3456899999999875
No 403
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=41.46 E-value=6.8 Score=30.29 Aligned_cols=16 Identities=25% Similarity=0.301 Sum_probs=13.1
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|...|..|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3677899999999754
No 404
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=41.45 E-value=10 Score=32.32 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.6
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|---|++|||||.++
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777799999999875
No 405
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=41.44 E-value=7.6 Score=28.33 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.1
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 5 ~~i~v~G~~~~GKssl~ 21 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALT 21 (168)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35788999999999765
No 406
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=41.41 E-value=8.8 Score=35.65 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=15.0
Q ss_pred eEeeccCcCCCceeEec
Q psy37 54 CVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl~ 70 (279)
.|+.+|++|+|||...-
T Consensus 329 ~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp CEEEEESSCCTHHHHHH
T ss_pred ceEEECCCchHHHHHHH
Confidence 69999999999998763
No 407
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=41.34 E-value=4.9 Score=32.56 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=13.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 30 ~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIF 45 (243)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999999865
No 408
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=41.22 E-value=12 Score=34.92 Aligned_cols=38 Identities=24% Similarity=0.101 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37 26 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 26 f~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
|.+-..|.++-+.+.. .+.+| ..+++-.+||+|||...
T Consensus 2 ~~~R~~Q~~~~~~v~~----~l~~~--~~~~~~apTGtGKT~a~ 39 (620)
T 4a15_A 2 YENRQYQVEAIDFLRS----SLQKS--YGVALESPTGSGKTIMA 39 (620)
T ss_dssp ---CHHHHHHHHHHHH----HHHHS--SEEEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHHH----HHHcC--CCEEEECCCCCCHHHHH
Confidence 3444556666555442 23345 45778889999999763
No 409
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=41.19 E-value=7.7 Score=28.41 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=13.9
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
-|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssli 20 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIV 20 (170)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999875
No 410
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=41.19 E-value=7 Score=30.64 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=12.6
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|..|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 3 IILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999998753
No 411
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=41.00 E-value=6.9 Score=33.67 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=20.4
Q ss_pred HHHHHhcc-ccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFE-GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~-G~n~~v~~yG~tgSGKT~Tl 69 (279)
.+|+.++. +....+.-+|+.|+|||.+|
T Consensus 60 ~ald~ll~i~~Gq~~gIiG~nGaGKTTLl 88 (347)
T 2obl_A 60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLL 88 (347)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHH
T ss_pred EEEEeeeeecCCCEEEEECCCCCCHHHHH
Confidence 45666653 44456667899999999876
No 412
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=40.91 E-value=7.7 Score=28.84 Aligned_cols=18 Identities=39% Similarity=0.444 Sum_probs=15.1
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...|+..|.+|+|||..+
T Consensus 8 ~~~i~v~G~~~~GKSsli 25 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLM 25 (182)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred eEEEEEECCCCCCHHHHH
Confidence 356889999999999865
No 413
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=40.90 E-value=9.4 Score=29.85 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=13.8
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
...+-+|++|||||..|
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 35567899999999865
No 414
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=40.85 E-value=5.1 Score=33.04 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=13.1
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 52 i~~liG~NGsGKSTLl 67 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFL 67 (263)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCcHHHHH
Confidence 4566799999999865
No 415
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=40.52 E-value=8.6 Score=32.48 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=13.8
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.++.-.|++|||||..+
T Consensus 127 e~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred CEEEEECCCCCcHHHHH
Confidence 46677899999999754
No 416
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=40.49 E-value=13 Score=28.58 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=20.0
Q ss_pred HHHHHh-ccccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAA-FEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v-~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
++++.+ +.-...-|+..|..|+|||..+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi 42 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLL 42 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHH
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHH
Confidence 345554 3444567899999999999866
No 417
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=40.38 E-value=5.2 Score=32.81 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=13.1
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 43 i~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTL 58 (256)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999865
No 418
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=40.37 E-value=7.6 Score=32.19 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=20.3
Q ss_pred HHHHHhccccC--eeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYN--ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n--~~v~~yG~tgSGKT~Tl 69 (279)
+.++.+.-|+. ..+...|++|+|||..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHH
Confidence 34566665543 36788999999999876
No 419
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=40.21 E-value=13 Score=34.41 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=16.9
Q ss_pred hccccCeeEeeccCcCCCceeEe
Q psy37 47 AFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 47 v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+-.| ..++.+|++|+|||..+
T Consensus 57 i~~g--~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 57 ANQK--RHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHTT--CCEEEECCTTSSHHHHH
T ss_pred ccCC--CEEEEEeCCCCCHHHHH
Confidence 3455 47888999999999876
No 420
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=40.10 E-value=8.1 Score=28.33 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=14.2
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 7 ~~i~v~G~~~~GKSsli 23 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIM 23 (170)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35788999999999765
No 421
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=40.09 E-value=12 Score=32.38 Aligned_cols=29 Identities=38% Similarity=0.422 Sum_probs=22.7
Q ss_pred HHHHHHhcc--ccC--eeEeeccCcCCCceeEe
Q psy37 41 MDVVDAAFE--GYN--ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 41 ~~lv~~v~~--G~n--~~v~~yG~tgSGKT~Tl 69 (279)
.+-+|.++. |+. ..+..+|++|+|||..+
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLa 78 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLA 78 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHH
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHH
Confidence 367888887 443 47889999999999865
No 422
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=40.05 E-value=2.8 Score=32.18 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=13.1
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|...|++|||||..+
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999876
No 423
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=39.98 E-value=9.6 Score=32.94 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=12.5
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
..+-.|++|||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3446999999999654
No 424
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=39.93 E-value=8.8 Score=28.96 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=13.1
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|...|..|||||...
T Consensus 7 ~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVS 22 (179)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999998764
No 425
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=39.84 E-value=5.4 Score=32.03 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=12.8
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 36 ~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLL 51 (229)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999865
No 426
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=39.80 E-value=8.1 Score=30.60 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=12.7
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|..|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999998753
No 427
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=39.74 E-value=12 Score=32.82 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=23.2
Q ss_pred HHHHHHhcc-cc--CeeEeeccCcCCCceeEec
Q psy37 41 MDVVDAAFE-GY--NACVFAYGQTGSGKTFTMM 70 (279)
Q Consensus 41 ~~lv~~v~~-G~--n~~v~~yG~tgSGKT~Tl~ 70 (279)
-+-+|.++. |+ ...+..+|++|||||..+.
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHH
Confidence 367888884 44 3478899999999998764
No 428
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=39.73 E-value=8.2 Score=29.68 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=13.6
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|+..|..|||||...
T Consensus 6 ~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQC 21 (204)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788899999999764
No 429
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=39.70 E-value=3.7 Score=32.35 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=18.8
Q ss_pred cCeeEeeccCcCCCceeEecC
Q psy37 51 YNACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl~G 71 (279)
-.+.|+.|+..|.|||+.-+|
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~G 47 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFG 47 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHH
Confidence 357899999999999999988
No 430
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=39.68 E-value=5.5 Score=32.55 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=12.9
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 33 ~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLL 48 (253)
T ss_dssp EEEEECCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999865
No 431
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=39.44 E-value=11 Score=28.36 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=16.4
Q ss_pred HHhcc-ccCeeEeeccCcCCCceeEe
Q psy37 45 DAAFE-GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 45 ~~v~~-G~n~~v~~yG~tgSGKT~Tl 69 (279)
..++. .....|+..|.+|+|||..+
T Consensus 10 ~~~~~~~~~~~i~v~G~~~~GKssl~ 35 (186)
T 1ksh_A 10 KKMKQKERELRLLMLGLDNAGKTTIL 35 (186)
T ss_dssp -------CCEEEEEECSTTSSHHHHH
T ss_pred HhhcccCCeeEEEEECCCCCCHHHHH
Confidence 33343 45567999999999999866
No 432
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=39.38 E-value=8.4 Score=29.94 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=16.6
Q ss_pred ccCeeEeeccCcCCCceeEe
Q psy37 50 GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 50 G~n~~v~~yG~tgSGKT~Tl 69 (279)
+....|+..|.+|+|||..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~ 29 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLL 29 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 44567999999999999766
No 433
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=39.29 E-value=6.1 Score=39.38 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=13.4
Q ss_pred EeeccCcCCCceeEecC
Q psy37 55 VFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl~G 71 (279)
.+...+||||||.|++.
T Consensus 303 gli~~~TGSGKT~t~~~ 319 (1038)
T 2w00_A 303 GYIWHTTGSGKTLTSFK 319 (1038)
T ss_dssp EEEEECTTSSHHHHHHH
T ss_pred EEEEecCCCCHHHHHHH
Confidence 45567899999999853
No 434
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=39.25 E-value=8.5 Score=28.00 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.3
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|.+|+|||..+
T Consensus 4 ~~i~v~G~~~~GKSsli 20 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45889999999999764
No 435
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=39.18 E-value=5.6 Score=32.87 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=26.5
Q ss_pred ceeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCe------eEeeccCcCCCceeEe
Q psy37 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNA------CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 11 ~~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~------~v~~yG~tgSGKT~Tl 69 (279)
....++.+.|.|+.- .. ..++++.|. .+.-.|++|||||..|
T Consensus 15 ~~l~~~~l~~~y~~~----~~-------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNH----PN-------------VQVLQGLTFTLYPGKVTALVGPNGSGKSTVA 62 (271)
T ss_dssp CCEEEEEEEECCTTC----TT-------------SCCEEEEEEEECTTCEEEEECSTTSSHHHHH
T ss_pred ceEEEEEEEEEeCCC----CC-------------ceeeEeeEEEECCCCEEEEECCCCCCHHHHH
Confidence 457888888776420 00 013555444 4567899999999865
No 436
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=39.15 E-value=5.6 Score=32.78 Aligned_cols=16 Identities=44% Similarity=0.586 Sum_probs=13.4
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 32 ~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLL 47 (263)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999999866
No 437
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=39.11 E-value=5.6 Score=32.46 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.3
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 28 ~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLL 43 (249)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4567899999999865
No 438
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=39.03 E-value=7.9 Score=28.38 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=13.6
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
-|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssli 20 (170)
T 1g16_A 5 KILLIGDSGVGKSCLL 20 (170)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5788999999999754
No 439
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=39.01 E-value=14 Score=31.82 Aligned_cols=28 Identities=36% Similarity=0.396 Sum_probs=21.2
Q ss_pred HHHHHhcc--cc--CeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFE--GY--NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~--G~--n~~v~~yG~tgSGKT~Tl 69 (279)
+-+|.++. |+ ...++.+|+.|+|||...
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLa 80 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 80 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 56777775 33 346888999999999865
No 440
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=39.00 E-value=8.6 Score=28.19 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.3
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 4 ~~i~v~G~~~~GKssli 20 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLV 20 (172)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999765
No 441
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=39.00 E-value=6.5 Score=38.00 Aligned_cols=17 Identities=41% Similarity=0.667 Sum_probs=14.2
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+.||+.|+|||+.-
T Consensus 512 ~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp SCCEEESSTTSSHHHHH
T ss_pred ceEEEecCCCCCchHHH
Confidence 35899999999999744
No 442
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=39.00 E-value=7.9 Score=29.99 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=14.3
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|..|||||...
T Consensus 11 ~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36889999999999864
No 443
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=38.97 E-value=7.9 Score=30.05 Aligned_cols=16 Identities=38% Similarity=0.260 Sum_probs=13.1
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|...|++|||||...
T Consensus 23 ~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLA 38 (207)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999754
No 444
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=38.95 E-value=8.6 Score=28.49 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=14.5
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 8 ~~i~v~G~~~~GKSsli 24 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLM 24 (177)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999765
No 445
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=38.93 E-value=5.7 Score=32.76 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.3
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 48 ~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLS 63 (267)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999865
No 446
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=38.88 E-value=9.1 Score=31.65 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.1
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|.+|||||...
T Consensus 3 ~~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999853
No 447
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=38.87 E-value=6.6 Score=30.06 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=20.6
Q ss_pred HHHHhccccCeeEeeccCcCCCceeEe
Q psy37 43 VVDAAFEGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl 69 (279)
+...++.-...-|+..|.+|+|||..+
T Consensus 20 ~~~~~~~~~~~ki~v~G~~~vGKSsLi 46 (192)
T 2b6h_A 20 LFSRIFGKKQMRILMVGLDAAGKTTIL 46 (192)
T ss_dssp GGGGTTTTSCEEEEEEESTTSSHHHHH
T ss_pred HHHHhccCCccEEEEECCCCCCHHHHH
Confidence 444455556678999999999999765
No 448
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=38.77 E-value=4.1 Score=35.20 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=13.4
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||.+|
T Consensus 28 ~~~llGpnGsGKSTLL 43 (348)
T 3d31_A 28 YFVILGPTGAGKTLFL 43 (348)
T ss_dssp EEEEECCCTHHHHHHH
T ss_pred EEEEECCCCccHHHHH
Confidence 4567799999999976
No 449
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=38.77 E-value=5.8 Score=32.32 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..+
T Consensus 31 ~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLG 46 (250)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999865
No 450
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=38.72 E-value=8.9 Score=28.01 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=13.8
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 4 ~ki~v~G~~~~GKssli 20 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788899999999754
No 451
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=38.60 E-value=15 Score=31.52 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=21.8
Q ss_pred HHHHHHHhc--cccCeeEeeccCcCCCceeEe
Q psy37 40 GMDVVDAAF--EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 40 ~~~lv~~v~--~G~n~~v~~yG~tgSGKT~Tl 69 (279)
...++..+. .+....|...|..|+|||.++
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAI 96 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHH
Confidence 334555554 455667888999999999876
No 452
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=38.60 E-value=5.8 Score=32.99 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=13.0
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 49 ~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLL 64 (279)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3556799999999865
No 453
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=38.27 E-value=10 Score=28.33 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=9.6
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 9 ~ki~v~G~~~~GKssl~ 25 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVL 25 (183)
T ss_dssp EEEEEECCCCC------
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999876
No 454
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=38.26 E-value=8.9 Score=28.13 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=14.6
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 7 ~~i~v~G~~~~GKssli 23 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLV 23 (170)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 46889999999999866
No 455
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=38.24 E-value=9.7 Score=29.72 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=13.9
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|..|||||...
T Consensus 26 ~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLA 42 (211)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46777899999998764
No 456
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=38.14 E-value=8.3 Score=34.03 Aligned_cols=15 Identities=33% Similarity=0.497 Sum_probs=12.6
Q ss_pred eEeeccCcCCCceeE
Q psy37 54 CVFAYGQTGSGKTFT 68 (279)
Q Consensus 54 ~v~~yG~tgSGKT~T 68 (279)
.|+..|+||||||..
T Consensus 4 ~i~i~GptgsGKttl 18 (409)
T 3eph_A 4 VIVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEEECSSSSHHHH
T ss_pred EEEEECcchhhHHHH
Confidence 467789999999964
No 457
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=37.81 E-value=9.3 Score=27.92 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=14.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 7 ~~i~v~G~~~~GKssli 23 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLV 23 (170)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45889999999999765
No 458
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=37.81 E-value=9.1 Score=31.44 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=18.4
Q ss_pred HHHhccccC--eeEeeccCcCCCceeEe
Q psy37 44 VDAAFEGYN--ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 44 v~~v~~G~n--~~v~~yG~tgSGKT~Tl 69 (279)
++.++.|+. ..+..+|++|||||..+
T Consensus 20 ld~~lggl~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 20 LDYVLPNMVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp CCEEETTEETTSEEEEEESTTSSHHHHH
T ss_pred hheeECCccCCCEEEEEcCCCCCHHHHH
Confidence 344454443 46888999999999865
No 459
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=37.70 E-value=9.8 Score=29.87 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=13.7
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|..|||||...
T Consensus 6 ~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788899999999753
No 460
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=37.41 E-value=6.2 Score=31.77 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=13.0
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|--.|+.|||||..+
T Consensus 27 iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556699999999876
No 461
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=37.19 E-value=10 Score=29.68 Aligned_cols=17 Identities=35% Similarity=0.333 Sum_probs=13.9
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
-.|...|..|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999999753
No 462
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=37.06 E-value=9.6 Score=28.26 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=14.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
--|+..|.+|+|||..+
T Consensus 10 ~~i~v~G~~~~GKssl~ 26 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLL 26 (181)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999765
No 463
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=36.96 E-value=11 Score=35.23 Aligned_cols=23 Identities=22% Similarity=0.041 Sum_probs=17.7
Q ss_pred HHHhccccCeeEeeccCcCCCceeE
Q psy37 44 VDAAFEGYNACVFAYGQTGSGKTFT 68 (279)
Q Consensus 44 v~~v~~G~n~~v~~yG~tgSGKT~T 68 (279)
+..+.+|.+ ++..++||||||..
T Consensus 180 i~~l~~g~d--vlv~a~TGSGKT~~ 202 (618)
T 2whx_A 180 EDIFRKKRL--TIMDLHPGAGKTKR 202 (618)
T ss_dssp GGGGSTTCE--EEECCCTTSSTTTT
T ss_pred HHHHhcCCe--EEEEcCCCCCHHHH
Confidence 445567765 56778999999997
No 464
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=36.90 E-value=9.9 Score=27.74 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=13.2
Q ss_pred EeeccCcCCCceeEe
Q psy37 55 VFAYGQTGSGKTFTM 69 (279)
Q Consensus 55 v~~yG~tgSGKT~Tl 69 (279)
|+..|.+|+|||..+
T Consensus 3 i~~~G~~~~GKssl~ 17 (164)
T 1r8s_A 3 ILMVGLDAAGKTTIL 17 (164)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999865
No 465
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=36.75 E-value=8.8 Score=29.08 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=15.1
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...|+..|.+|+|||..+
T Consensus 23 ~~~i~v~G~~~~GKSsli 40 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFI 40 (195)
T ss_dssp CCEEEEEEBTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456889999999999765
No 466
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=36.58 E-value=10 Score=28.66 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|.+|+|||..+
T Consensus 22 ~ki~vvG~~~~GKSsli 38 (190)
T 3con_A 22 YKLVVVGAGGVGKSALT 38 (190)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 46888999999999765
No 467
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=36.52 E-value=9 Score=33.76 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=16.5
Q ss_pred cccCeeEeeccCcCCCceeEe
Q psy37 49 EGYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 49 ~G~n~~v~~yG~tgSGKT~Tl 69 (279)
......|+..|.+|||||+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla 275 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFI 275 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHH
Confidence 344567889999999999754
No 468
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=36.45 E-value=9.6 Score=33.94 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=19.3
Q ss_pred HHHHHhcc-ccCeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFE-GYNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~-G~n~~v~~yG~tgSGKT~Tl 69 (279)
++|+.++. +....+.-+|++|+|||..|
T Consensus 146 ~vld~vl~i~~Gq~~~IvG~sGsGKSTLl 174 (438)
T 2dpy_A 146 RAINALLTVGRGQRMGLFAGSGVGKSVLL 174 (438)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTSSHHHHH
T ss_pred eEEeeeEEecCCCEEEEECCCCCCHHHHH
Confidence 35666553 44455666799999999865
No 469
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=36.33 E-value=9 Score=28.88 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.5
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 24 ~~i~v~G~~~~GKSsli 40 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLL 40 (195)
T ss_dssp CEEEEEEBTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999765
No 470
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=36.30 E-value=6.2 Score=34.63 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=27.0
Q ss_pred cceeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCe------eEeeccCcCCCceeEe
Q psy37 10 HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNA------CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 10 ~~~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~------~v~~yG~tgSGKT~Tl 69 (279)
.....++...+.|.. .. ..++++.|- .+.-.|++|||||.+|
T Consensus 17 ~~~i~~~~l~~~y~~----~~--------------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTE----GG--------------NAILENISFSISPGQRVGLLGRTGSGKSTLL 64 (390)
T ss_dssp SCCEEEEEEEEESSS----SS--------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHH
T ss_pred CCeEEEEEEEEEecC----CC--------------eEEeeceeEEEcCCCEEEEECCCCChHHHHH
Confidence 346788888877731 00 013555443 4567899999999876
No 471
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=36.27 E-value=10 Score=27.83 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=14.5
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 8 ~~i~v~G~~~~GKssl~ 24 (171)
T 1upt_A 8 MRILILGLDGAGKTTIL 24 (171)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46889999999999755
No 472
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=36.14 E-value=9.3 Score=29.60 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.2
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|+..|..|||||...
T Consensus 10 ~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36888999999999864
No 473
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=36.08 E-value=5.9 Score=30.81 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.0
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.|...|.+|||||..+
T Consensus 2 ~I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3667899999999764
No 474
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=36.02 E-value=9.4 Score=28.23 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=14.3
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 15 ~~i~v~G~~~~GKssli 31 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLI 31 (179)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788899999999865
No 475
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=35.89 E-value=10 Score=28.13 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=14.9
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...|+..|.+|+|||..+
T Consensus 8 ~~~i~v~G~~~~GKssl~ 25 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLL 25 (178)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346888999999999866
No 476
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=35.85 E-value=9.6 Score=27.88 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=13.4
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
-|+..|.+|+|||..+
T Consensus 4 ki~~vG~~~~GKSsli 19 (166)
T 3q72_A 4 KVLLLGAPGVGKSALA 19 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999765
No 477
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=35.70 E-value=9.7 Score=29.09 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=5.8
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
...-|+..|.+|+|||..+
T Consensus 19 ~~~~i~v~G~~~~GKssli 37 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALI 37 (208)
T ss_dssp EEEEEEEC-----------
T ss_pred cceEEEEECCCCCCHHHHH
Confidence 3457899999999999866
No 478
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=35.61 E-value=4.2 Score=35.17 Aligned_cols=16 Identities=38% Similarity=0.411 Sum_probs=13.3
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.+.-.|++|||||..|
T Consensus 33 ~~~llGpnGsGKSTLL 48 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFM 48 (353)
T ss_dssp EEEEECSCHHHHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4556799999999976
No 479
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=35.55 E-value=11 Score=27.93 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=15.0
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
..-|+..|.+|+|||..+
T Consensus 15 ~~~i~v~G~~~~GKSsli 32 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLL 32 (179)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 356889999999999765
No 480
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=35.53 E-value=11 Score=27.70 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=13.5
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
-|+..|.+|+|||..+
T Consensus 4 ki~ivG~~~~GKSsli 19 (169)
T 3q85_A 4 KVMLVGESGVGKSTLA 19 (169)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999755
No 481
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=35.43 E-value=5.9 Score=35.39 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=15.9
Q ss_pred eeEeeccCcCCCceeEecC
Q psy37 53 ACVFAYGQTGSGKTFTMMG 71 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl~G 71 (279)
...+..|..|||||+.|..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~ 180 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILS 180 (446)
T ss_dssp EEEEEEECTTSCHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHH
Confidence 3567899999999999854
No 482
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=35.25 E-value=9.8 Score=28.20 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 10 ~~i~v~G~~~~GKssli 26 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALT 26 (181)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999755
No 483
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=35.23 E-value=11 Score=28.92 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=14.5
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
..|...|+.|+|||..+
T Consensus 6 ~kv~lvG~~g~GKSTLl 22 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLL 22 (199)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 46788999999999765
No 484
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=34.88 E-value=7.7 Score=32.79 Aligned_cols=16 Identities=31% Similarity=0.437 Sum_probs=13.2
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
.++.-|..|||||..|
T Consensus 6 v~~i~G~~GaGKTTll 21 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEEESSSSSCHHHH
T ss_pred EEEEEecCCCCHHHHH
Confidence 4566799999999876
No 485
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=34.87 E-value=11 Score=28.15 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=15.0
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
..-|+..|.+|+|||..+
T Consensus 18 ~~ki~v~G~~~~GKSsl~ 35 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALT 35 (183)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999765
No 486
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=34.86 E-value=16 Score=30.65 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=20.9
Q ss_pred HHHHHhccccCe--eEeeccCcCCCceeEe
Q psy37 42 DVVDAAFEGYNA--CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~G~n~--~v~~yG~tgSGKT~Tl 69 (279)
+-++.++.|+.. .++..|.+|+|||.-+
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~ 85 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFA 85 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHH
Confidence 557777766544 6888899999999543
No 487
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=34.77 E-value=11 Score=28.19 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.1
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 5 ~ki~v~G~~~~GKSsli 21 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALT 21 (189)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35889999999999654
No 488
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=34.74 E-value=11 Score=28.06 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.3
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 19 ~ki~v~G~~~~GKSsli 35 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALT 35 (187)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999754
No 489
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=34.66 E-value=11 Score=28.73 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.4
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 15 ~ki~v~G~~~~GKSsli 31 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALT 31 (206)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46889999999999865
No 490
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=34.48 E-value=11 Score=27.72 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=14.3
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 5 ~ki~i~G~~~vGKSsl~ 21 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLA 21 (175)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCccHHHHH
Confidence 45889999999999754
No 491
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=34.37 E-value=11 Score=27.96 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=15.0
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
..-|+..|.+|+|||..+
T Consensus 12 ~~ki~v~G~~~~GKSsli 29 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLV 29 (181)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred ceEEEEECcCCCCHHHHH
Confidence 456899999999999754
No 492
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=34.30 E-value=10 Score=28.33 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=14.5
Q ss_pred eeEeeccCcCCCceeEe
Q psy37 53 ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~Tl 69 (279)
.-|+..|.+|+|||..+
T Consensus 11 ~ki~v~G~~~~GKSsli 27 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLL 27 (186)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999755
No 493
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=34.24 E-value=17 Score=31.04 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=19.0
Q ss_pred HHHHHhcc-----cc-CeeEeeccCcCCCceeEe
Q psy37 42 DVVDAAFE-----GY-NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 42 ~lv~~v~~-----G~-n~~v~~yG~tgSGKT~Tl 69 (279)
+-+|.++. |+ .+.+..||+.|+|||...
T Consensus 12 ~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~ 45 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSGLLILAGPSKSFKSNFG 45 (333)
T ss_dssp HHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHH
T ss_pred HHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHH
Confidence 45566665 22 125789999999999753
No 494
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=34.21 E-value=12 Score=28.98 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=13.0
Q ss_pred eeEeeccCcCCCceeE
Q psy37 53 ACVFAYGQTGSGKTFT 68 (279)
Q Consensus 53 ~~v~~yG~tgSGKT~T 68 (279)
..|...|..|||||..
T Consensus 13 ~iIgltG~~GSGKSTv 28 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTV 28 (192)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4567789999999865
No 495
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=34.15 E-value=17 Score=31.41 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=21.3
Q ss_pred HHHHHHhcc--ccC--eeEeeccCcCCCceeEe
Q psy37 41 MDVVDAAFE--GYN--ACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 41 ~~lv~~v~~--G~n--~~v~~yG~tgSGKT~Tl 69 (279)
.+-+|.++. |+. ..++.||+.|+|||...
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtla 91 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLA 91 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHH
Confidence 366788886 443 35677999999999765
No 496
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=34.08 E-value=6.4 Score=31.88 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=16.0
Q ss_pred cCeeEeeccCcCCCceeEe
Q psy37 51 YNACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 51 ~n~~v~~yG~tgSGKT~Tl 69 (279)
....|+..|.+|+|||.++
T Consensus 21 ~~~~I~lvG~~g~GKStl~ 39 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAG 39 (260)
T ss_dssp CCEEEEEEECTTSCHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3467899999999999875
No 497
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=34.00 E-value=14 Score=31.13 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.6
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
..+-+|++|||||-.|
T Consensus 26 ~~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 26 VTAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEEECCTTTCSTHHH
T ss_pred cEEEECCCCCcHHHHH
Confidence 5668899999999766
No 498
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=34.00 E-value=42 Score=18.97 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy37 260 TRIIRELHDEITKLKAMLTS 279 (279)
Q Consensus 260 ~~~~~~l~~~~~~Lk~~l~~ 279 (279)
..++..|+.|+++|..+..|
T Consensus 30 ekiianlrdeiarlenevas 49 (52)
T 3he5_B 30 EKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34667888888888877654
No 499
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=33.69 E-value=8.7 Score=33.23 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=14.3
Q ss_pred eEeeccCcCCCceeEe
Q psy37 54 CVFAYGQTGSGKTFTM 69 (279)
Q Consensus 54 ~v~~yG~tgSGKT~Tl 69 (279)
..+-+|+.|||||..|
T Consensus 28 ~~~i~G~nG~GKttll 43 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLL 43 (359)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCChhHHH
Confidence 6788999999999876
No 500
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=33.66 E-value=7.9 Score=37.43 Aligned_cols=18 Identities=39% Similarity=0.647 Sum_probs=15.3
Q ss_pred CeeEeeccCcCCCceeEe
Q psy37 52 NACVFAYGQTGSGKTFTM 69 (279)
Q Consensus 52 n~~v~~yG~tgSGKT~Tl 69 (279)
...++.||++|+|||+..
T Consensus 511 ~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCCBCCTTSSHHHHH
T ss_pred CceeEEECCCCCCHHHHH
Confidence 346899999999999965
Done!