RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy37
(279 letters)
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 184 bits (469), Expect = 3e-56
Identities = 71/96 (73%), Positives = 82/96 (85%), Gaps = 4/96 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST----KKSTFIPYRDSVLTWLLKDSLGGNSKT 219
GDRLKEG++INKSL TLG VIS+LA+ S+ KKS+FIPYRDSVLTWLLK++LGGNSKT
Sbjct: 261 GDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKT 320
Query: 220 IMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 255
MIA ISPAD+NY ETLSTLRYA+RAK I+N VN
Sbjct: 321 AMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356
Score = 125 bits (316), Expect = 7e-34
Identities = 48/85 (56%), Positives = 56/85 (65%), Gaps = 6/85 (7%)
Query: 69 MMGSKATTDNSPDAH------KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFE 122
M G T N A K F+FDHSYWS D P +ASQE VF DLG +++D AFE
Sbjct: 27 MPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFE 86
Query: 123 GYNACVFAYGQTGSGKTFTMMGSKA 147
GYN C+FAYGQTGSGK++TMMG K
Sbjct: 87 GYNVCLFAYGQTGSGKSYTMMGYKE 111
Score = 123 bits (310), Expect = 6e-33
Identities = 43/64 (67%), Positives = 51/64 (79%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
K F+FDHSYWS D P +ASQE VF DLG +++D AFEGYN C+FAYGQTGSGK++TMM
Sbjct: 48 KSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMM 107
Query: 71 GSKA 74
G K
Sbjct: 108 GYKE 111
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 169 bits (431), Expect = 6e-49
Identities = 101/324 (31%), Positives = 153/324 (47%), Gaps = 64/324 (19%)
Query: 10 HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
+ FD F PS A+QE V+ + ++D+ GYN VFAYGQTGSGKT+TM
Sbjct: 55 EGTYAFDKV---FGPS----ATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTM 107
Query: 70 MGSKA--------------TTDNSPDAHKDFTFDHSYW---------SFDPSSPQFASQE 106
G++ ++ KDF SY P+ +E
Sbjct: 108 SGTEEEPGIIPLSLKELFSKLEDLSM-TKDFAVSISYLEIYNEKIYDLLSPNEESLNIRE 166
Query: 107 QVFNDL---GMDVVDAAFEGYNACVFAYGQTG--------------SGKTFTM-MGSKAR 148
+ G+ + + + G+ S F + + SK +
Sbjct: 167 DSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNK 226
Query: 149 NFGEGKDCVCSIVE------------AGDRLKEGAHINKSLVTLGSVISSLAELSTKKST 196
G + S+V+ G RLKEGA INKSL+TLG+VI++L KKS
Sbjct: 227 VSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINAL--GDKKKSG 284
Query: 197 FIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNE 256
IPYR+S LT LL+DSLGGN T +I ISP+ ++ ET++TL++A+RAK+I NK VN
Sbjct: 285 HIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344
Query: 257 DP-NTRIIRELHDEITKLKAMLTS 279
++R I E+ ++++ ++ +
Sbjct: 345 SSDSSREIEEIKFDLSEDRSEIEI 368
Score = 72.8 bits (179), Expect = 1e-14
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 70 MGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVF 129
K+ + FD F PS A+QE V+ + ++D+ GYN VF
Sbjct: 42 TSKKSHVSLEKSKEGTYAFDKV---FGPS----ATQEDVYEETIKPLIDSLLLGYNCTVF 94
Query: 130 AYGQTGSGKTFTMMGSK 146
AYGQTGSGKT+TM G++
Sbjct: 95 AYGQTGSGKTYTMSGTE 111
Score = 30.1 bits (68), Expect = 1.3
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 16/117 (13%)
Query: 129 FAYGQTGSGKTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEG-----AHINKSLVTLGSV 183
FAY Q+ +T T+ K+R K + E LKE + + + + +
Sbjct: 386 FAYMQSLKKETETL---KSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRL 442
Query: 184 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLR 240
+ E +KK T ++ + L L L + D SE S LR
Sbjct: 443 LLLREEELSKKKT-KIHKLNKLRHDLSSLLSSIPEETS-------DRVESEKASKLR 491
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 162 bits (413), Expect = 4e-48
Identities = 62/93 (66%), Positives = 73/93 (78%), Gaps = 2/93 (2%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
GDRLKE +INKSL LG+VI++LA+ S KS IPYRDS LT LL+DSLGGNSKT+MI
Sbjct: 245 EGDRLKEAGNINKSLSALGNVINALAQHS--KSRHIPYRDSKLTRLLQDSLGGNSKTLMI 302
Query: 223 AAISPADVNYSETLSTLRYANRAKNIINKPTVN 255
A +SP+ N ETLSTLR+A+RAK I NKP VN
Sbjct: 303 ANVSPSSSNLEETLSTLRFASRAKEIKNKPIVN 335
Score = 104 bits (262), Expect = 4e-26
Identities = 39/92 (42%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 62 GSGKTFTMMG--SKATTDNSPDA---HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDV 116
S K T SP K FTFD FD + ASQE VF + +
Sbjct: 19 KSPSVVPFPDKVGKTLTVRSPKNRQGEKKFTFDKV---FDAT----ASQEDVFEETAAPL 71
Query: 117 VDAAFEGYNACVFAYGQTGSGKTFTMMGSKAR 148
VD+ EGYNA +FAYGQTGSGKT+TM+G+
Sbjct: 72 VDSVLEGYNATIFAYGQTGSGKTYTMIGTPDS 103
Score = 103 bits (260), Expect = 6e-26
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 7/71 (9%)
Query: 3 TDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTG 62
+ + K FTFD FD + ASQE VF + +VD+ EGYNA +FAYGQTG
Sbjct: 38 SPKNRQGEKKFTFDKV---FDAT----ASQEDVFEETAAPLVDSVLEGYNATIFAYGQTG 90
Query: 63 SGKTFTMMGSK 73
SGKT+TM+G+
Sbjct: 91 SGKTYTMIGTP 101
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 159 bits (405), Expect = 4e-47
Identities = 60/85 (70%), Positives = 71/85 (83%), Gaps = 3/85 (3%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G RLKE A+INKSL LG+VI++LAE +S+ IPYRDS LT LL+DSLGGNSKT+MIA
Sbjct: 245 GRRLKEAANINKSLSALGNVINALAE---NQSSHIPYRDSKLTRLLQDSLGGNSKTLMIA 301
Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
ISP+D NY ETLSTLR+A+RAKNI
Sbjct: 302 NISPSDSNYEETLSTLRFASRAKNI 326
Score = 99 bits (250), Expect = 1e-24
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 4 DNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS 63
+ K FTFD FDP A+QE V+ + +V++ EGYN +FAYGQTGS
Sbjct: 33 ITNKGREKTFTFDRV---FDPE----ATQEFVYEETAKPLVESVLEGYNVTIFAYGQTGS 85
Query: 64 GKTFTMMGS 72
GKT+TM G
Sbjct: 86 GKTYTMEGD 94
Score = 99 bits (250), Expect = 1e-24
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 77 DNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS 136
+ K FTFD FDP A+QE V+ + +V++ EGYN +FAYGQTGS
Sbjct: 33 ITNKGREKTFTFDRV---FDPE----ATQEFVYEETAKPLVESVLEGYNVTIFAYGQTGS 85
Query: 137 GKTFTMMGS 145
GKT+TM G
Sbjct: 86 GKTYTMEGD 94
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 148 bits (375), Expect = 1e-42
Identities = 61/85 (71%), Positives = 66/85 (77%), Gaps = 3/85 (3%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
GDRLKE IN SL LG+VIS+L + KST IPYRDS LT LL+DSLGGNSKT+M A
Sbjct: 252 GDRLKEATKINLSLSALGNVISALVD---GKSTHIPYRDSKLTRLLQDSLGGNSKTVMCA 308
Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
I PAD NY ETLSTLRYANRAKNI
Sbjct: 309 NIGPADYNYDETLSTLRYANRAKNI 333
Score = 82.8 bits (205), Expect = 3e-18
Identities = 41/99 (41%), Positives = 50/99 (50%), Gaps = 13/99 (13%)
Query: 49 EGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQV 108
EG V G T+ KA P K FTFD Y DP+S Q E V
Sbjct: 19 EGAPEIVGVDENRG---QVTVHNPKADAKEPP---KVFTFDAVY---DPNSTQ----EDV 65
Query: 109 FNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA 147
+N+ +VD+ EGYN +FAYGQTG+GKTFTM G +
Sbjct: 66 YNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVRE 104
Score = 80.9 bits (200), Expect = 1e-17
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 7/71 (9%)
Query: 4 DNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS 63
++ + K FTFD Y DP+S Q E V+N+ +VD+ EGYN +FAYGQTG+
Sbjct: 41 ADAKEPPKVFTFDAVY---DPNSTQ----EDVYNETARPLVDSVLEGYNGTIFAYGQTGT 93
Query: 64 GKTFTMMGSKA 74
GKTFTM G +
Sbjct: 94 GKTFTMEGVRE 104
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 146 bits (371), Expect = 5e-42
Identities = 55/85 (64%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G RLKEGA+IN+SL+ LG+ I++L + KK+ IPYRDS LT LLKDSLGGN KT+MIA
Sbjct: 255 GQRLKEGANINRSLLALGNCINALVDGK-KKNKHIPYRDSKLTRLLKDSLGGNCKTVMIA 313
Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
ISP+ +Y ET +TL+YANRAKNI
Sbjct: 314 NISPSSSHYEETHNTLKYANRAKNI 338
Score = 75.8 bits (187), Expect = 8e-16
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 11/70 (15%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
++FD FD +S +QE+V+ + +VD GYNA VFAYG TG+GKT TM+
Sbjct: 54 LKYSFDRV---FDETS----TQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTML 106
Query: 71 GSKATTDNSP 80
G TD+ P
Sbjct: 107 G----TDSDP 112
Score = 75.8 bits (187), Expect = 8e-16
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
++FD FD +S +QE+V+ + +VD GYNA VFAYG TG+GKT TM+
Sbjct: 54 LKYSFDRV---FDETS----TQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTML 106
Query: 144 GSKA 147
G+ +
Sbjct: 107 GTDS 110
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 145 bits (367), Expect = 3e-41
Identities = 55/86 (63%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
GDRLKEG IN L+ LG+VIS+L + +KK + +PYRDS LT LL+DSLGGNS T+MI
Sbjct: 256 TGDRLKEGISINSGLLALGNVISALGD-ESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMI 314
Query: 223 AAISPADVNYSETLSTLRYANRAKNI 248
A +SPAD N+ ETL+TL+YANRA+NI
Sbjct: 315 ACVSPADSNFEETLNTLKYANRARNI 340
Score = 83.1 bits (206), Expect = 2e-18
Identities = 37/73 (50%), Positives = 45/73 (61%), Gaps = 9/73 (12%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
K FTFD+ FDPS+ SQE+V+N +VD FEGYNA V AYGQTGSGKT+TM
Sbjct: 40 KSFTFDYV---FDPST----SQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMG 92
Query: 71 GSKATTDNSPDAH 83
A T + +
Sbjct: 93 T--AFTASEDEEE 103
Score = 82.0 bits (203), Expect = 6e-18
Identities = 35/59 (59%), Positives = 41/59 (69%), Gaps = 7/59 (11%)
Query: 84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142
K FTFD+ FDPS+ SQE+V+N +VD FEGYNA V AYGQTGSGKT+TM
Sbjct: 40 KSFTFDYV---FDPST----SQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTM 91
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 142 bits (360), Expect = 2e-40
Identities = 56/83 (67%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
GDRLKE +INKSL LG+VIS+L+ +K IPYRDS LT LL+DSLGGNSKT+MIA
Sbjct: 248 GDRLKEAKNINKSLSALGNVISALSSG--QKKKHIPYRDSKLTRLLQDSLGGNSKTLMIA 305
Query: 224 AISPADVNYSETLSTLRYANRAK 246
ISP+ NY ETLSTLR+A+RAK
Sbjct: 306 NISPSSENYDETLSTLRFASRAK 328
Score = 96.2 bits (240), Expect = 4e-23
Identities = 37/93 (39%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 61 TGSGKTFTMMGSKATTDNSPD-----AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMD 115
T+ +K T P K FTFDH FDP+S +QE V+
Sbjct: 17 KSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHV---FDPNS----TQEDVYETTAKP 69
Query: 116 VVDAAFEGYNACVFAYGQTGSGKTFTMMGSKAR 148
+V++ EGYN +FAYGQTGSGKT+TM GS
Sbjct: 70 LVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKD 102
Score = 94.6 bits (236), Expect = 1e-22
Identities = 33/65 (50%), Positives = 41/65 (63%), Gaps = 7/65 (10%)
Query: 9 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 68
K FTFDH FDP+S +QE V+ +V++ EGYN +FAYGQTGSGKT+T
Sbjct: 43 GPKSFTFDHV---FDPNS----TQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYT 95
Query: 69 MMGSK 73
M GS
Sbjct: 96 MFGSP 100
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 136 bits (344), Expect = 7e-38
Identities = 56/94 (59%), Positives = 69/94 (73%), Gaps = 4/94 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
R +E +IN+SL+TLG VI++L E KS IPYR+S LT LL+DSLGG +KT +IA
Sbjct: 263 NKRAREAGNINQSLLTLGRVINALVE----KSPHIPYRESKLTRLLQDSLGGRTKTSIIA 318
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNED 257
ISPA +N ETLSTL YA+RAKNI NKP VN+
Sbjct: 319 TISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352
Score = 69.2 bits (170), Expect = 1e-13
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 12/77 (15%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
K +TFD F P A Q +V++ + ++D GYN +FAYGQTG+GKT+TM
Sbjct: 48 KTYTFDKV---FGPE----ADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTME 100
Query: 71 G-----SKATTDNSPDA 82
G +T + SP A
Sbjct: 101 GDRTDNKGSTWELSPHA 117
Score = 69.2 bits (170), Expect = 2e-13
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
K +TFD F P A Q +V++ + ++D GYN +FAYGQTG+GKT+TM
Sbjct: 48 KTYTFDKV---FGPE----ADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTME 100
Query: 144 G 144
G
Sbjct: 101 G 101
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 128 bits (324), Expect = 4e-35
Identities = 48/85 (56%), Positives = 62/85 (72%), Gaps = 4/85 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
GDRLKE INKSL LG VIS+L K + +PYR+S LT+LL+DSLGGNSKT+M
Sbjct: 246 GDRLKEAQAINKSLSALGDVISALR----SKDSHVPYRNSKLTYLLQDSLGGNSKTLMFV 301
Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
ISP + N SETL +LR+A+R +++
Sbjct: 302 NISPLESNLSETLCSLRFASRVRSV 326
Score = 86.1 bits (214), Expect = 2e-19
Identities = 34/74 (45%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 71 GSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFA 130
G K F+FD FDP ASQE VF ++ +V +A +GYN C+FA
Sbjct: 32 GGTIELSKGTGKKKSFSFDRV---FDPD----ASQEDVFEEVSP-LVQSALDGYNVCIFA 83
Query: 131 YGQTGSGKTFTMMG 144
YGQTGSGKT+TM G
Sbjct: 84 YGQTGSGKTYTMEG 97
Score = 85.7 bits (213), Expect = 2e-19
Identities = 33/61 (54%), Positives = 41/61 (67%), Gaps = 8/61 (13%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
K F+FD FDP ASQE VF ++ +V +A +GYN C+FAYGQTGSGKT+TM
Sbjct: 45 KSFSFDRV---FDPD----ASQEDVFEEVSP-LVQSALDGYNVCIFAYGQTGSGKTYTME 96
Query: 71 G 71
G
Sbjct: 97 G 97
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 132 bits (333), Expect = 9e-35
Identities = 67/120 (55%), Positives = 85/120 (70%), Gaps = 7/120 (5%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELS-TKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 221
AGDRLKE +IN+SL LG++I+ LAE+S T K IPYRDS LT+LL++SLGGN+K M
Sbjct: 348 AGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAM 407
Query: 222 IAAISPADVNYSETLSTLRYANRAKNIINKPTVNE----DPN--TRIIRELHDEITKLKA 275
+ AISP+ SET STLR+A RAK I NK VNE D N +IR+L DE+ ++KA
Sbjct: 408 VCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKA 467
Score = 59.6 bits (144), Expect = 5e-10
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 69 MMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACV 128
M+ K + D+ + FTFD DP S +QE +F +G +V+ G+N+ V
Sbjct: 117 MIVQKMSNDSLTINGQTFTFDSIA---DPES----TQEDIFQLVGAPLVENCLAGFNSSV 169
Query: 129 FAYGQTGSGKTFTMMG 144
FAYGQTGSGKT+TM G
Sbjct: 170 FAYGQTGSGKTYTMWG 185
Score = 59.2 bits (143), Expect = 7e-10
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71
++FD + ++QE +F +G +V+ G+N+ VFAYGQTGSGKT+TM G
Sbjct: 134 FTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWG 185
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 121 bits (306), Expect = 1e-32
Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
AG+R KEG+ INKSL+TLG+VIS L+E K S IPYRDS LT +L+ SL GN++T +I
Sbjct: 238 AGERRKEGSFINKSLLTLGTVISKLSE--GKNSGHIPYRDSKLTRILQPSLSGNARTAII 295
Query: 223 AAISPADVNYSETLSTLRYANRAKNI 248
ISPA + ETL+TL++A+RAK +
Sbjct: 296 CTISPASSHVEETLNTLKFASRAKKV 321
Score = 78.1 bits (193), Expect = 1e-16
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 13 FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 72
FTFD F S + +V+ + VV +A EGYN +FAYGQT SGKTFTM G
Sbjct: 42 FTFDRV---FGGES----TNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGD 94
Score = 78.1 bits (193), Expect = 1e-16
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 86 FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
FTFD F S + +V+ + VV +A EGYN +FAYGQT SGKTFTM G
Sbjct: 42 FTFDRV---FGGES----TNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGD 94
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 115 bits (290), Expect = 8e-32
Identities = 73/209 (34%), Positives = 100/209 (47%), Gaps = 46/209 (22%)
Query: 35 VFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWS 94
VF D+G ++ +A +GYN C+FAYGQTGSGKT+TM G +
Sbjct: 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREG------------------- 47
Query: 95 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK----TFTMMGSKARNF 150
P+ + D G A A + S F + A
Sbjct: 48 -AGIIPRTVTDVIDLMDKG-----NANRTTAATAMNEHSSRSHSVFRIHFGGKNALASAT 101
Query: 151 GEGKDCVCSIVE------------AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFI 198
+ K ++V+ G RL E A+INKSL TLG+VIS+LAE + + +
Sbjct: 102 EQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAE----RDSHV 157
Query: 199 PYRDSVLTWLLKDSLGGNSKTIMIAAISP 227
PYR+S LT LL+DSLGGNS+T+M+A ISP
Sbjct: 158 PYRESKLTRLLQDSLGGNSRTLMVACISP 186
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 116 bits (293), Expect = 1e-30
Identities = 49/85 (57%), Positives = 60/85 (70%), Gaps = 3/85 (3%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G L+E INKSL LG+VI++L + KST IPYRDS LT +L+DSLGGNS+T +I
Sbjct: 244 GQTLEEAKKINKSLSALGNVINALTD---GKSTHIPYRDSKLTRILQDSLGGNSRTTLII 300
Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
SP+ N SETLSTLR+ RAK I
Sbjct: 301 CCSPSSYNESETLSTLRFGARAKTI 325
Score = 78.5 bits (194), Expect = 7e-17
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 78 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 137
D K F+FD F P++ +QE V+N + +VD GYN +FAYGQTGSG
Sbjct: 37 AGSDDGKTFSFDRV---FPPNT----TQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSG 89
Query: 138 KTFTMMGSKARNFGEG 153
KT+TM G +G
Sbjct: 90 KTYTMEGPPGDPELKG 105
Score = 77.7 bits (192), Expect = 1e-16
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 5 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
D K F+FD F P++ +QE V+N + +VD GYN +FAYGQTGSG
Sbjct: 37 AGSDDGKTFSFDRV---FPPNT----TQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSG 89
Query: 65 KTFTMMG 71
KT+TM G
Sbjct: 90 KTYTMEG 96
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 115 bits (290), Expect = 3e-30
Identities = 49/85 (57%), Positives = 64/85 (75%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G RLKE +INKSL TLG VI +L +++ K +PYRDS LT+LL+DSLGGN+KT +IA
Sbjct: 253 GVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIA 312
Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
+SP+ + ETLSTL++A RAK I
Sbjct: 313 NVSPSSKCFGETLSTLKFAQRAKLI 337
Score = 78.3 bits (193), Expect = 1e-16
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 9/74 (12%)
Query: 7 PDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT 66
P FTFDH D ++ +QE VF +G +V+ GYN +FAYGQTGSGKT
Sbjct: 39 PPRM--FTFDHV---ADSNT----NQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKT 89
Query: 67 FTMMGSKATTDNSP 80
+TMMG ++ D SP
Sbjct: 90 YTMMGPSSSDDESP 103
Score = 74.4 bits (183), Expect = 3e-15
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 9/65 (13%)
Query: 80 PDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT 139
P FTFDH D ++ +QE VF +G +V+ GYN +FAYGQTGSGKT
Sbjct: 39 PPRM--FTFDHV---ADSNT----NQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKT 89
Query: 140 FTMMG 144
+TMMG
Sbjct: 90 YTMMG 94
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 98.9 bits (247), Expect = 3e-24
Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 165 DRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAA 224
KEGA INKSL+ L I +LA +P+R S LT +L+DS GNSKT+MIA
Sbjct: 245 QTRKEGAEINKSLLALKECIRALA----SNKAHVPFRGSKLTQVLRDSFIGNSKTVMIAT 300
Query: 225 ISPADVNYSETLSTLRYANRAK 246
ISP+ + TL+TLRYA+R K
Sbjct: 301 ISPSASSCEHTLNTLRYADRVK 322
Score = 63.0 bits (154), Expect = 2e-11
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 13 FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 72
F FD+ FD + + E+V+ ++ FEG A FAYGQTGSGKT+TM+G
Sbjct: 53 FRFDYV---FDEAV----TNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGD 105
Score = 63.0 bits (154), Expect = 2e-11
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 86 FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
F FD+ FD + + E+V+ ++ FEG A FAYGQTGSGKT+TM+G
Sbjct: 53 FRFDYV---FDEAV----TNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGD 105
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 87.5 bits (217), Expect = 5e-20
Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G RLKE A IN SL L V+ +L K IPYR+S LT LL+DSLGG S+ IM+A
Sbjct: 241 GIRLKESAAINSSLFVLSKVVDAL----NKGLPRIPYRESKLTRLLQDSLGGGSRCIMVA 296
Query: 224 AISPADVNYSETLSTLRYANRAK 246
I+P Y +TLSTL +A+R+K
Sbjct: 297 NIAPERSFYQDTLSTLNFASRSK 319
Score = 56.3 bits (136), Expect = 3e-09
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 22 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 72
FD +QE +F+ +V G NA VFAYG TG+GKT TM+G
Sbjct: 51 FDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGD 101
Score = 56.3 bits (136), Expect = 3e-09
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 95 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
FD +QE +F+ +V G NA VFAYG TG+GKT TM+G
Sbjct: 51 FDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGD 101
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 87.5 bits (217), Expect = 5e-20
Identities = 44/83 (53%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G LKE +INKSL L VI++L+E K T +PYR+S LT +L+DSLGGN KT+M+A
Sbjct: 255 GQVLKEAKYINKSLSFLEQVINALSE---KARTHVPYRNSKLTHVLRDSLGGNCKTVMLA 311
Query: 224 AISPADVNYSETLSTLRYANRAK 246
I N ETLSTLR+A R
Sbjct: 312 TIWVEPSNLDETLSTLRFAQRVA 334
Score = 72.5 bits (178), Expect = 1e-14
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 61 TGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAA 120
+ +N + F FD F ASQE+V+ + VVD+A
Sbjct: 26 KSVSSNLPKDLVRGVVNNQQEDFS-FKFDGV---FHN-----ASQEEVYETVAKPVVDSA 76
Query: 121 FEGYNACVFAYGQTGSGKTFTMMG 144
+GYN +FAYGQTG+GKTFTM G
Sbjct: 77 LDGYNGTIFAYGQTGAGKTFTMTG 100
Score = 71.0 bits (174), Expect = 3e-14
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 8/59 (13%)
Query: 13 FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71
F FD F ASQE+V+ + VVD+A +GYN +FAYGQTG+GKTFTM G
Sbjct: 50 FKFDGV---FHN-----ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTG 100
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 77.0 bits (190), Expect = 3e-16
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAE--LSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 221
G+RLKE +IN SL+TLG I L E LS + +PYRDS LT L ++ G K M
Sbjct: 261 GERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARM 320
Query: 222 IAAISPADVNYSETLSTLRYANRAK 246
I ++P +Y ETL ++++ A+
Sbjct: 321 IVNVNPCASDYDETLHVMKFSAIAQ 345
Score = 53.1 bits (128), Expect = 4e-08
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 5 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
N F+F + P +Q++ F + +V +G N+ +F YG T SG
Sbjct: 49 NGGQKETKFSFSKVF------GPN-TTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSG 101
Query: 65 KTFTMMGSK 73
KT+TM GS
Sbjct: 102 KTYTMQGSP 110
Score = 53.1 bits (128), Expect = 4e-08
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 78 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 137
N F+F + P +Q++ F + +V +G N+ +F YG T SG
Sbjct: 49 NGGQKETKFSFSKVF------GPN-TTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSG 101
Query: 138 KTFTMMGSK 146
KT+TM GS
Sbjct: 102 KTYTMQGSP 110
>gnl|CDD|172540 PRK14048, PRK14048, ferrichrome/ferrioxamine B periplasmic
transporter; Provisional.
Length = 374
Score = 33.7 bits (77), Expect = 0.080
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 111 DLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNFGEGK 154
+ G V+ AF + C +AYG+ G G+ + GS RN EG
Sbjct: 204 EPGPTVLMEAFPAADRCCWAYGRGGLGEFIALTGS--RNIAEGA 245
Score = 29.9 bits (67), Expect = 1.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 38 DLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 73
+ G V+ AF + C +AYG+ G G+ + GS+
Sbjct: 204 EPGPTVLMEAFPAADRCCWAYGRGGLGEFIALTGSR 239
>gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation
protein. Members of this protein family are found
exclusively in the archaea. This set of DNA binding
proteins shows homology to the origin recognition
complex subunit 1/cell division control protein 6 family
in eukaryotes. Several members may be found in genome
and interact with each other [DNA metabolism, DNA
replication, recombination, and repair].
Length = 365
Score = 33.8 bits (78), Expect = 0.094
Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 28/108 (25%)
Query: 128 VFAYGQTGSGKTFTMM--GSKARNFGEGKDCVCSIVEAGDRLKEGAHIN-KSLVTLGSVI 184
VF YG+TG+GKT + E +D V ++N + L TL V+
Sbjct: 43 VFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTV----------YVNCQILDTLYQVL 92
Query: 185 SSLAELSTKKSTFIPYRDSVLT--W-------LLKDSLGGNSKTIMIA 223
LA + V T L L +++I
Sbjct: 93 VELAN------QLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIV 134
Score = 28.8 bits (65), Expect = 3.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 55 VFAYGQTGSGKT 66
VF YG+TG+GKT
Sbjct: 43 VFIYGKTGTGKT 54
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 31.4 bits (71), Expect = 0.23
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCSI 160
+ +E+ L +D + A G V G +G+GKT + + C
Sbjct: 1 RLVGREEELERL-LDALRRARSGGPPSVLLTGPSGTGKTSLL--RELLEGLLVAAGKCDQ 57
Query: 161 VEA 163
E
Sbjct: 58 AER 60
Score = 30.2 bits (68), Expect = 0.60
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 28 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT 66
+ +E+ L +D + A G V G +G+GKT
Sbjct: 1 RLVGREEELERL-LDALRRARSGGPPSVLLTGPSGTGKT 38
>gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional.
Length = 652
Score = 32.3 bits (75), Expect = 0.28
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 59 GQTGSGKTFTM 69
G TGSGKTFTM
Sbjct: 39 GVTGSGKTFTM 49
Score = 32.3 bits (75), Expect = 0.28
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 132 GQTGSGKTFTM 142
G TGSGKTFTM
Sbjct: 39 GVTGSGKTFTM 49
>gnl|CDD|145711 pfam02702, KdpD, Osmosensitive K+ channel His kinase sensor domain.
This is a family of KdpD sensor kinase proteins that
regulate the kdpFABC operon responsible for potassium
transport. The aligned region corresponds to the
N-terminal cytoplasmic part of the protein which may be
the sensor domain responsible for sensing turgor
pressure.
Length = 211
Score = 31.5 bits (72), Expect = 0.39
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 135 GSGKTFTMMGSKARNFGEGKDCVCSIVEAGDR 166
G GKT+ M+ G D V VE R
Sbjct: 15 GVGKTYAMLSEAHELLERGVDVVIGYVETHGR 46
>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair
complex [DNA replication, recombination, and repair].
Length = 663
Score = 30.6 bits (70), Expect = 0.90
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 59 GQTGSGKTFTM 69
G TGSGKTFTM
Sbjct: 39 GVTGSGKTFTM 49
Score = 30.6 bits (70), Expect = 0.90
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 132 GQTGSGKTFTM 142
G TGSGKTFTM
Sbjct: 39 GVTGSGKTFTM 49
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 30.3 bits (68), Expect = 1.1
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 183 VISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADV 230
+I + LS K+ +RD+V+T L+ +S + I +AA AD+
Sbjct: 373 IIDPMQPLSFKQEEDTEFRDTVVTLLIDNSGSMRGRPITVAATC-ADI 419
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily. Many of the proteins in this family
are conjugative transfer proteins.
Length = 316
Score = 30.1 bits (68), Expect = 1.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 52 NACVFAYGQTGSGKTFTMM 70
N + G +GSGK+ +
Sbjct: 1 NPNMLIVGPSGSGKSTLLK 19
Score = 30.1 bits (68), Expect = 1.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 125 NACVFAYGQTGSGKTFTMM 143
N + G +GSGK+ +
Sbjct: 1 NPNMLIVGPSGSGKSTLLK 19
>gnl|CDD|220450 pfam09869, DUF2096, Uncharacterized protein conserved in archaea
(DUF2096). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 169
Score = 28.9 bits (65), Expect = 2.0
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 234 ETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAML 277
E + LR A I+N ++ N +R+ E+ +++ +L
Sbjct: 25 EVIEKLRLAR---AILNFYLLDPHANFEELRDAEKELNRVQEIL 65
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide
variety of AAA domains including some that have lost
essential nucleotide binding residues in the P-loop.
Length = 509
Score = 29.4 bits (67), Expect = 2.2
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 49 EGYNACVFAYGQTGSGKTFTMM 70
GYN +F G+ G+G+T +
Sbjct: 29 PGYN--IFVLGEPGTGRTTLVR 48
Score = 29.4 bits (67), Expect = 2.2
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 122 EGYNACVFAYGQTGSGKTFTMM 143
GYN +F G+ G+G+T +
Sbjct: 29 PGYN--IFVLGEPGTGRTTLVR 48
>gnl|CDD|233063 TIGR00631, uvrb, excinuclease ABC, B subunit. All proteins in
this family for wich functions are known are DNA
helicases that function in the nucleotide excision
repair and are endonucleases that make the 3' incision
next to DNA damage. They are part of a pathway
requiring UvrA, UvrB, UvrC, and UvrD homologs. This
family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and
repair].
Length = 655
Score = 29.6 bits (67), Expect = 2.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 59 GQTGSGKTFTM 69
G TGSGKTFTM
Sbjct: 36 GVTGSGKTFTM 46
Score = 29.6 bits (67), Expect = 2.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 132 GQTGSGKTFTM 142
G TGSGKTFTM
Sbjct: 36 GVTGSGKTFTM 46
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 29.0 bits (65), Expect = 2.3
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 43 VVDAAFEGYNACVFAYGQTGSGKTFTMM 70
++A G + A TGSGKT +
Sbjct: 16 AIEALLSGLRDVILA-APTGSGKTLAAL 42
Score = 29.0 bits (65), Expect = 2.3
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 116 VVDAAFEGYNACVFAYGQTGSGKTFTMM 143
++A G + A TGSGKT +
Sbjct: 16 AIEALLSGLRDVILA-APTGSGKTLAAL 42
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal
transduction mechanisms].
Length = 890
Score = 29.6 bits (67), Expect = 2.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 135 GSGKTFTMMGSKARNFGEGKDCVCSIVEAGDR 166
G GKT+ M+ R EG D V +VE R
Sbjct: 32 GVGKTYAMLSEAQRLLAEGVDVVIGVVETHGR 63
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase. Members of this family
include the DEAD and DEAH box helicases. Helicases are
involved in unwinding nucleic acids. The DEAD box
helicases are involved in various aspects of RNA
metabolism, including nuclear transcription, pre mRNA
splicing, ribosome biogenesis, nucleocytoplasmic
transport, translation, RNA decay and organellar gene
expression.
Length = 169
Score = 28.4 bits (64), Expect = 2.6
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 43 VVDAAFEGYNACVFAYGQTGSGKT 66
+ A G + V TGSGKT
Sbjct: 7 AIPAILSGKD--VLVQAPTGSGKT 28
Score = 28.4 bits (64), Expect = 2.6
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 116 VVDAAFEGYNACVFAYGQTGSGKT 139
+ A G + V TGSGKT
Sbjct: 7 AIPAILSGKD--VLVQAPTGSGKT 28
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 27.9 bits (62), Expect = 3.4
Identities = 29/153 (18%), Positives = 47/153 (30%), Gaps = 21/153 (13%)
Query: 116 VVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHINK 175
+ +A + YG G+GKT AR + G +N
Sbjct: 10 LREALELPPPKNLLLYGPPGTGKTTL-----ARAIAN------ELFRPGAPFLY---LNA 55
Query: 176 SLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSET 235
S + G V++ L + F + L D + + A + ET
Sbjct: 56 SDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDS-----LSRGAQNALLRVLET 110
Query: 236 LSTLRYANRAKNIINKPTVNEDPNTRIIRELHD 268
L+ LR +I N + R L+D
Sbjct: 111 LNDLRIDRENVRVI--GATNRPLLGDLDRALYD 141
Score = 27.9 bits (62), Expect = 4.2
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 43 VVDAAFEGYNACVFAYGQTGSGKTFTMM 70
+ +A + YG G+GKT
Sbjct: 10 LREALELPPPKNLLLYGPPGTGKTTLAR 37
>gnl|CDD|205289 pfam13108, DUF3969, Protein of unknown function (DUF3969). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 110 amino acids in length.
Length = 108
Score = 27.3 bits (61), Expect = 4.1
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 233 SETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLK 274
E L + +II+ ED + I L+D I LK
Sbjct: 42 IELLDKNGLSEELIDIIHLGMELEDIESLIPEHLNDTIDDLK 83
>gnl|CDD|235871 PRK06835, PRK06835, DNA replication protein DnaC; Validated.
Length = 329
Score = 28.3 bits (64), Expect = 4.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 48 FEGYNACVFAYGQTGSGKTF 67
F+ N + YG TG+GKTF
Sbjct: 179 FDKNNENLLFYGNTGTGKTF 198
Score = 28.3 bits (64), Expect = 4.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 121 FEGYNACVFAYGQTGSGKTF 140
F+ N + YG TG+GKTF
Sbjct: 179 FDKNNENLLFYGNTGTGKTF 198
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion.
Length = 165
Score = 27.5 bits (61), Expect = 5.3
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 131 YGQTGSGKTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHI 173
+G TGSGKT + A N K V+ + ++E
Sbjct: 5 FGPTGSGKTTLAL-QLALNIA-TKGGKVVYVDIEEEIEELTER 45
>gnl|CDD|181361 PRK08295, PRK08295, RNA polymerase factor sigma-70; Validated.
Length = 208
Score = 28.0 bits (63), Expect = 5.4
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 233 SETLSTLRYANRAKNI-------INKPTVNEDPNTRIIRELHDEITKLKAM 276
+ ++ ++ ANR K+I ++KP +E+ + R L D I++ K
Sbjct: 87 RQIITAIKTANRQKHIPLNSYVSLDKPIYDEESD----RTLLDVISEAKVT 133
>gnl|CDD|173155 PRK14692, PRK14692, lagellar hook-associated protein FlgL;
Provisional.
Length = 749
Score = 28.0 bits (62), Expect = 6.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 61 TGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSS 99
TG K ++G D S D KDF +D S F P++
Sbjct: 213 TGDSKWQQLIGQNYVKDGSLDPDKDFEYDDSKLDFPPTT 251
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region.
Length = 144
Score = 26.9 bits (60), Expect = 6.6
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 59 GQTGSGKTFTMM 70
TGSGKT +
Sbjct: 7 APTGSGKTLAAL 18
Score = 26.9 bits (60), Expect = 6.6
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 132 GQTGSGKTFTMM 143
TGSGKT +
Sbjct: 7 APTGSGKTLAAL 18
>gnl|CDD|218292 pfam04851, ResIII, Type III restriction enzyme, res subunit.
Length = 100
Score = 26.4 bits (59), Expect = 7.3
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 61 TGSGKTFTMM 70
TGSGKT T
Sbjct: 27 TGSGKTLTAA 36
Score = 26.4 bits (59), Expect = 7.3
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 134 TGSGKTFTMM 143
TGSGKT T
Sbjct: 27 TGSGKTLTAA 36
>gnl|CDD|213711 TIGR02453, TIGR02453, TIGR02453 family protein. Members of this
family are widely (though sparsely) distributed
bacterial proteins about 230 residues in length. All
members have a motif RxxRDxRFxxx[DN]KxxY. The function
of this protein family is unknown. In several fungi,
this model identifies a conserved region of a longer
protein. Therefore, it may be incorrect to speculate
that all members share a common function.
Length = 217
Score = 27.3 bits (61), Expect = 7.7
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 178 VTLGSVISSLAELSTKKSTFIPYRDS 203
L + L + K S F YRD
Sbjct: 45 ARLAKISPELRGDAKKGSLFRIYRDV 70
>gnl|CDD|216796 pfam01935, DUF87, Domain of unknown function DUF87. The function
of this prokaryotic domain is unknown. It contains
several conserved aspartates and histidines that could
be metal ligands.
Length = 218
Score = 27.3 bits (61), Expect = 8.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 58 YGQTGSGKTFTM 69
G TGSGK+ T+
Sbjct: 29 LGSTGSGKSNTV 40
Score = 27.3 bits (61), Expect = 8.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 131 YGQTGSGKTFTM 142
G TGSGK+ T+
Sbjct: 29 LGSTGSGKSNTV 40
>gnl|CDD|236694 PRK10436, PRK10436, hypothetical protein; Provisional.
Length = 462
Score = 27.6 bits (62), Expect = 8.8
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 59 GQTGSGKTFTM 69
G TGSGKT T+
Sbjct: 225 GPTGSGKTVTL 235
Score = 27.6 bits (62), Expect = 8.8
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 132 GQTGSGKTFTM 142
G TGSGKT T+
Sbjct: 225 GPTGSGKTVTL 235
>gnl|CDD|234308 TIGR03682, arCOG04112, diphthamide biosynthesis enzyme Dph2.
Members of this family are the archaeal protein Dph2,
members of the universal archaeal protein family
designated arCOG04112. The chemical function of this
protein is analogous to the radical SAM family
(pfam04055), although the sequence is not homologous.
The chemistry involves [4Fe-4S]-aided formation of a
3-amino-3-carboxypropyl radical rather than the
canonical 5'-deoxyadenosyl radical of the radical SAM
family.
Length = 308
Score = 27.3 bits (61), Expect = 8.8
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 250 NKPTVNEDPNTRIIRELHDEITKL 273
NKP DP + + ++ EI K
Sbjct: 175 NKPVYAADPFSGEVEDIEAEIDKF 198
>gnl|CDD|144046 pfam00308, Bac_DnaA, Bacterial dnaA protein.
Length = 219
Score = 27.3 bits (61), Expect = 9.2
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 11 KDFTFDHSYWSFDP-SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT 66
K +TF+ +F SS +FA + V +A + YN F YG G GKT
Sbjct: 3 KRYTFE----NFVIGSSNRFAHA------AALAVAEAPGKAYNPL-FIYGGVGLGKT 48
Score = 27.3 bits (61), Expect = 9.2
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 84 KDFTFDHSYWSFDP-SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT 139
K +TF+ +F SS +FA + V +A + YN F YG G GKT
Sbjct: 3 KRYTFE----NFVIGSSNRFAHA------AALAVAEAPGKAYNPL-FIYGGVGLGKT 48
>gnl|CDD|184972 PRK15010, PRK15010, ABC transporter lysine/arginine/ornithine
binding periplasmic protein; Provisional.
Length = 260
Score = 27.3 bits (60), Expect = 9.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARN---FGEG 153
+A+Q+ V++DL +DAA + A + + +GK F G ++ FG+G
Sbjct: 162 YANQDLVYSDLAAGRLDAALQDEVAASEGFLKQPAGKDFAFAGPSVKDKKYFGDG 216
>gnl|CDD|220905 pfam10923, DUF2791, P-loop Domain of unknown function (DUF2791).
This is a family of proteins found in archaea and
bacteria. This domain contains a P-loop motif suggesting
it binds to a nucleotide such as ATP.
Length = 417
Score = 27.2 bits (61), Expect = 10.0
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 122 EGYNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCS 159
+G + F G+ GSGKTF R + V +
Sbjct: 46 DGGASFRFVRGEYGSGKTF--FLRLLREIAMERGFVVA 81
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.130 0.381
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,908,137
Number of extensions: 1272698
Number of successful extensions: 1617
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1588
Number of HSP's successfully gapped: 107
Length of query: 279
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 183
Effective length of database: 6,679,618
Effective search space: 1222370094
Effective search space used: 1222370094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.3 bits)