RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy37
(279 letters)
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 220 bits (564), Expect = 2e-70
Identities = 67/104 (64%), Positives = 82/104 (78%), Gaps = 8/104 (7%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
G RLKEGA+INKSL TLG VIS+LAE+ + KK+ FIPYRDSVLTWLL+++LGG
Sbjct: 262 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 321
Query: 216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPN 259
NS+T M+AA+SPAD+NY ETLSTLRYA+RAK I N +VN +
Sbjct: 322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNHHHH 365
Score = 131 bits (331), Expect = 4e-36
Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 62 GSGKTFTMMGSKATTDNSPDAH---KDFTFDHSYWSFD-PSSPQFASQEQVFNDLGMDVV 117
S M GS T N K F+FD+SYWS P +ASQ+QV+ D+G +++
Sbjct: 23 DSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEML 82
Query: 118 DAAFEGYNACVFAYGQTGSGKTFTMMGS 145
AFEGYN C+FAYGQTG+GK++TMMG
Sbjct: 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGK 110
Score = 130 bits (330), Expect = 6e-36
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 4 DNSPDAHKDFTFDHSYWSFD-PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTG 62
+ K F+FD+SYWS P +ASQ+QV+ D+G +++ AFEGYN C+FAYGQTG
Sbjct: 41 KQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTG 100
Query: 63 SGKTFTMMGSKATTD 77
+GK++TMMG +
Sbjct: 101 AGKSYTMMGKQEKDQ 115
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 218 bits (559), Expect = 1e-69
Identities = 65/103 (63%), Positives = 77/103 (74%), Gaps = 3/103 (2%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G+RLKE IN SL LG+VIS+L + KST IPYRDS LT LL+DSLGGN+KT+M+A
Sbjct: 272 GERLKEATKINLSLSALGNVISALVD---GKSTHIPYRDSKLTRLLQDSLGGNAKTVMVA 328
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIREL 266
+ PA N ETL+TLRYANRAKNI NKP VNEDP ++RE
Sbjct: 329 NVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREF 371
Score = 114 bits (287), Expect = 1e-29
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 49 EGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQV 108
Y+ V + G ++ K T P K FTFD Y A Q ++
Sbjct: 39 ASYDKVVDVDVKLG---QVSVKNPKGTAHEMP---KTFTFDAVYDWN-------AKQFEL 85
Query: 109 FNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146
+++ +VD+ +G+N +FAYGQTG+GKT+TM G +
Sbjct: 86 YDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIR 123
Score = 112 bits (282), Expect = 6e-29
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 4 DNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS 63
+ + K FTFD Y A Q +++++ +VD+ +G+N +FAYGQTG+
Sbjct: 61 GTAHEMPKTFTFDAVYDWN-------AKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGT 113
Query: 64 GKTFTMMGSKATTDN 78
GKT+TM G + +
Sbjct: 114 GKTYTMEGIRGDPEK 128
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 218 bits (557), Expect = 3e-69
Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G RLKE IN SL LG V+ +L + +PYRDS LT LL+DSLGG++ +I+IA
Sbjct: 267 GLRLKESGAINTSLFVLGKVVDALNQ----GLPRVPYRDSKLTRLLQDSLGGSAHSILIA 322
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAML 277
I+P Y +T+S L +A R+K +IN+P NE + + +L
Sbjct: 323 NIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVKLSQKELLGPP 376
Score = 107 bits (269), Expect = 4e-27
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 60 QTGSGKTFTMMGSKATTDNSPDAH---KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDV 116
M S + + H + FD Y ++Q+ ++ +
Sbjct: 38 GASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGER-------STQQDIYAGSVQPI 90
Query: 117 VDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
+ EG NA V AYG TG+GKT TM+GS
Sbjct: 91 LRHLLEGQNASVLAYGPTGAGKTHTMLGS 119
Score = 106 bits (267), Expect = 1e-26
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 5 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
+ + FD Y ++Q+ ++ ++ EG NA V AYG TG+G
Sbjct: 59 RNHQETLKYQFDAFYGER-------STQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAG 111
Query: 65 KTFTMMGS 72
KT TM+GS
Sbjct: 112 KTHTMLGS 119
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 214 bits (548), Expect = 2e-68
Identities = 51/112 (45%), Positives = 72/112 (64%), Gaps = 6/112 (5%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G L+E INKSL LG VI++L + KS+ +PYRDS LT +L++SLGGNS+T +I
Sbjct: 249 GQTLEEAKKINKSLSALGMVINALTD---GKSSHVPYRDSKLTRILQESLGGNSRTTLII 305
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 275
SP+ N +ETLSTLR+ RAK+I NK VN + + +++ + K K
Sbjct: 306 NCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQ---MLAKAKT 354
Score = 118 bits (299), Expect = 2e-31
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 60 QTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDA 119
++G T G T +S +A FTFD + Q +F+ VD
Sbjct: 23 ESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMS-------CKQSDIFDFSIKPTVDD 75
Query: 120 AFEGYNACVFAYGQTGSGKTFTMMGS 145
GYN VFAYGQTG+GK++TMMG+
Sbjct: 76 ILNGYNGTVFAYGQTGAGKSYTMMGT 101
Score = 114 bits (289), Expect = 4e-30
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 5 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
+S +A FTFD + Q +F+ VD GYN VFAYGQTG+G
Sbjct: 41 DSKEAQGSFTFDRVFDMS-------CKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAG 93
Query: 65 KTFTMMGSKATTDNSP 80
K++TMMG+ +
Sbjct: 94 KSYTMMGTSIDDPDGR 109
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 209 bits (534), Expect = 4e-66
Identities = 51/114 (44%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G L E +INKSL LG+VIS+LA+ T IPYRDS LT +L++SLGGN++T ++
Sbjct: 252 GTVLDEAKNINKSLSALGNVISALAD---GNKTHIPYRDSKLTRILQESLGGNARTTIVI 308
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTR-IIRELHDEITKLKAM 276
SPA N SET STL + RAK + N VNE+ R E K +
Sbjct: 309 CCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNARL 362
Score = 105 bits (264), Expect = 2e-26
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 70 MGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVF 129
+ + A K + FD + ASQE+V+N+ +V GYN +F
Sbjct: 37 FPNNVEENCISIAGKVYLFDKVFKPN-------ASQEKVYNEAAKSIVTDVLAGYNGTIF 89
Query: 130 AYGQTGSGKTFTMMGS 145
AYGQT SGKT TM G
Sbjct: 90 AYGQTSSGKTHTMEGV 105
Score = 105 bits (263), Expect = 3e-26
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
K + FD + ASQE+V+N+ +V GYN +FAYGQT SGKT TM
Sbjct: 51 KVYLFDKVFKPN-------ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103
Query: 71 GSKATTDN 78
G +
Sbjct: 104 GVIGDSVK 111
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 209 bits (533), Expect = 4e-66
Identities = 64/100 (64%), Positives = 71/100 (71%), Gaps = 4/100 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G+ L EGA IN SL LG VIS L E +T IPYRDS LT LL+DSLGGNSKT+M A
Sbjct: 255 GETLVEGAKINLSLSALGLVISKLVE----GATHIPYRDSKLTRLLQDSLGGNSKTLMCA 310
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRII 263
ISPA NY ET+STLRYA+RAK I NKP +NEDP I
Sbjct: 311 NISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDAQI 350
Score = 112 bits (283), Expect = 2e-29
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 49 EGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQV 108
E + + + + + + FTFD Y + +
Sbjct: 22 ENALNIIRMDEASAQ-VIVDPPEQEKSATQAKKVPRTFTFDAVYDQT-------SCNYGI 73
Query: 109 FNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
F ++DA EG+N+ +FAYGQTG+GKT+TM G+
Sbjct: 74 FQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGN 110
Score = 111 bits (279), Expect = 9e-29
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 4 DNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS 63
+ + FTFD Y + +F ++DA EG+N+ +FAYGQTG+
Sbjct: 49 TQAKKVPRTFTFDAVYDQT-------SCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGA 101
Query: 64 GKTFTMMGS 72
GKT+TM G+
Sbjct: 102 GKTWTMGGN 110
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 211 bits (538), Expect = 6e-66
Identities = 62/129 (48%), Positives = 78/129 (60%), Gaps = 21/129 (16%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST------------------KKSTFIPYRDSVL 205
G RL+EG++INKSL TLG VI++LA+ + ++ +PYRDSVL
Sbjct: 313 GQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVL 372
Query: 206 TWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRE 265
TWLLKDSLGGNSKT MIA ISP D Y ETLSTLRYA++AK I + VN+ E
Sbjct: 373 TWLLKDSLGGNSKTAMIACISPTD--YDETLSTLRYADQAKRIRTRAVVNQVDGVSAA-E 429
Query: 266 LHDEITKLK 274
+I +
Sbjct: 430 RDAQIPSIV 438
Score = 135 bits (341), Expect = 6e-37
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 49 EGYNACVFAYGQTGS-----GKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFA 103
V T + ++ K FTFD S+WS + +A
Sbjct: 56 RNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYA 115
Query: 104 SQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
+QE V++ LG + +D FEGY+ C+FAYGQTGSGK++TMMG+
Sbjct: 116 TQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT 157
Score = 133 bits (336), Expect = 3e-36
Identities = 34/62 (54%), Positives = 47/62 (75%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
K FTFD S+WS + +A+QE V++ LG + +D FEGY+ C+FAYGQTGSGK++TMM
Sbjct: 96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Query: 71 GS 72
G+
Sbjct: 156 GT 157
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 204 bits (521), Expect = 3e-64
Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 4/105 (3%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
AG RLKEG +IN+SL LG VI L++ + FI YRDS LT +L++SLGGN+KT +I
Sbjct: 247 AGVRLKEGCNINRSLFILGQVIKKLSD--GQVGGFINYRDSKLTRILQNSLGGNAKTRII 304
Query: 223 AAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELH 267
I+P ++ ETL+ L++A+ AK + N P VNE + H
Sbjct: 305 CTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELEHHHH 347
Score = 116 bits (294), Expect = 8e-31
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 70 MGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVF 129
+ D K F FD + + + + V+ ++ ++D+A +GYN +F
Sbjct: 30 WKTDNNVIYQVDGSKSFNFDRVFHGNE-------TTKNVYEEIAAPIIDSAIQGYNGTIF 82
Query: 130 AYGQTGSGKTFTMMGS 145
AYGQT SGKT+TMMGS
Sbjct: 83 AYGQTASGKTYTMMGS 98
Score = 114 bits (289), Expect = 3e-30
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 2 TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 61
D K F FD + + + + V+ ++ ++D+A +GYN +FAYGQT
Sbjct: 35 NVIYQVDGSKSFNFDRVFHGNE-------TTKNVYEEIAAPIIDSAIQGYNGTIFAYGQT 87
Query: 62 GSGKTFTMMGS 72
SGKT+TMMGS
Sbjct: 88 ASGKTYTMMGS 98
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 200 bits (512), Expect = 5e-63
Identities = 63/89 (70%), Positives = 74/89 (83%), Gaps = 2/89 (2%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST--KKSTFIPYRDSVLTWLLKDSLGGNSKTIM 221
GDRLKEG++INKSL TLG VIS+LA+ S K+ F+PYRDSVLTWLLKDSLGGNSKT M
Sbjct: 264 GDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAM 323
Query: 222 IAAISPADVNYSETLSTLRYANRAKNIIN 250
+A +SPA NY ETLSTLRYA+RAK+ +
Sbjct: 324 VATVSPAADNYDETLSTLRYADRAKHHHH 352
Score = 135 bits (341), Expect = 1e-37
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 49 EGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSS-PQFASQEQ 107
V + + + ++ K F +DH +WS D S ++A Q+
Sbjct: 19 LHTKCVVDVDANKV---ILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDI 75
Query: 108 VFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
VF LG +++ AF+GYNAC+FAYGQTGSGK++TMMG+
Sbjct: 76 VFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGT 113
Score = 131 bits (331), Expect = 4e-36
Identities = 35/73 (47%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 1 ATTDNSPDAHKDFTFDHSYWSFDPSS-PQFASQEQVFNDLGMDVVDAAFEGYNACVFAYG 59
+ ++ K F +DH +WS D S ++A Q+ VF LG +++ AF+GYNAC+FAYG
Sbjct: 41 LSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYG 100
Query: 60 QTGSGKTFTMMGS 72
QTGSGK++TMMG+
Sbjct: 101 QTGSGKSYTMMGT 113
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 199 bits (508), Expect = 3e-62
Identities = 51/93 (54%), Positives = 70/93 (75%), Gaps = 4/93 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+DSLGG ++T +IA
Sbjct: 270 DKRAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIA 325
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNE 256
ISPA +N ETLSTL YA+RAKNI+NKP VN+
Sbjct: 326 TISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
Score = 110 bits (278), Expect = 2e-28
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 2 TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 61
+ K +TFD + + Q V+ + ++D GYN +FAYGQT
Sbjct: 46 GGLADKSSRKTYTFDMVFGAS-------TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQT 98
Query: 62 GSGKTFTMMGSKATTDNSPDAHKD 85
G+GKTFTM G ++ +
Sbjct: 99 GTGKTFTMEGERSPNEEYTWEEDP 122
Score = 110 bits (278), Expect = 2e-28
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 49 EGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQV 108
++ V T + ++ K +TFD + + Q V
Sbjct: 26 ASAHSIVECDPVRKEVSVRTGGLADKSSR------KTYTFDMVFGAS-------TKQIDV 72
Query: 109 FNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
+ + ++D GYN +FAYGQTG+GKTFTM G
Sbjct: 73 YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE 109
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 197 bits (503), Expect = 2e-61
Identities = 51/98 (52%), Positives = 70/98 (71%), Gaps = 4/98 (4%)
Query: 162 EAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 221
E G R++E +IN+SL+TLG VI++L + ++ +PYR+S LT LL++SLGG +KT +
Sbjct: 279 EKGIRVRETVNINQSLLTLGRVITALVD----RAPHVPYRESKLTRLLQESLGGRTKTSI 334
Query: 222 IAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPN 259
IA ISP + ETLSTL YA+RAKNI NKP VN+
Sbjct: 335 IATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372
Score = 105 bits (264), Expect = 2e-26
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
K FTFD S+ + Q V++ + +++ GYN VFAYGQTG+GKT TM+
Sbjct: 67 KKFTFDRSFGPE-------SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119
Query: 71 GSKATTDNSPDAHKD 85
G++ S
Sbjct: 120 GNETAELKSSWEDDS 134
Score = 105 bits (264), Expect = 2e-26
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
K FTFD S+ + Q V++ + +++ GYN VFAYGQTG+GKT TM+
Sbjct: 67 KKFTFDRSFGPE-------SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119
Query: 144 GSKARNFGEGKD 155
G++ +
Sbjct: 120 GNETAELKSSWE 131
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 196 bits (500), Expect = 3e-61
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G +EG +IN L+++ V+ S+A T IPYRDSVLT +L+ SL S +A
Sbjct: 255 GVARQEGVNINLGLLSINKVVMSMAA----GHTVIPYRDSVLTTVLQASLTAQSYLTFLA 310
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVN 255
ISP + SETLSTLR+ AK + +
Sbjct: 311 CISPHQCDLSETLSTLRFGTSAKAAALEHHHH 342
Score = 110 bits (276), Expect = 2e-28
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
+F FDH++ + SQ++++ L + +VD EG+ AYGQTG+GK+++M
Sbjct: 61 NEFHFDHAFPAT-------ISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMG 113
Query: 71 GSKATTDNSPDA 82
+
Sbjct: 114 MTPPGEILPEHL 125
Score = 109 bits (275), Expect = 4e-28
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
+F FDH++ + SQ++++ L + +VD EG+ AYGQTG+GK+++M
Sbjct: 61 NEFHFDHAFPAT-------ISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMG 113
Query: 144 GS 145
+
Sbjct: 114 MT 115
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 194 bits (495), Expect = 3e-60
Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 6/114 (5%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G++LKE INKSL LG VIS+L+ + IPYR+ LT L+ DSLGGN+KT+M
Sbjct: 247 GNQLKEAQSINKSLSALGDVISALSS----GNQHIPYRNHKLTMLMSDSLGGNAKTLMFV 302
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAML 277
ISPA+ N ET ++L YA+R ++I+N P+ N + + L ++ K
Sbjct: 303 NISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--KEVARLKKLVSYWKEQA 354
Score = 99 bits (250), Expect = 2e-24
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 5 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
D K +D FD ++ +Q+ VF D +V +A +GYN C+FAYGQTGSG
Sbjct: 41 WKDDKAKQHMYDRV---FDGNA----TQDDVFEDTK-YLVQSAVDGYNVCIFAYGQTGSG 92
Query: 65 KTFTMMGSK 73
KTFT+ G+
Sbjct: 93 KTFTIYGAD 101
Score = 99 bits (250), Expect = 2e-24
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 78 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 137
D K +D FD ++ +Q+ VF D +V +A +GYN C+FAYGQTGSG
Sbjct: 41 WKDDKAKQHMYDRV---FDGNA----TQDDVFEDTK-YLVQSAVDGYNVCIFAYGQTGSG 92
Query: 138 KTFTMMGSK 146
KTFT+ G+
Sbjct: 93 KTFTIYGAD 101
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 190 bits (486), Expect = 5e-59
Identities = 52/85 (61%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G R EG +IN+SL+ LG+VI++LA+ S +K+ IPYR+S LT LLKDSLGGN +TIMIA
Sbjct: 272 GTRFVEGTNINRSLLALGNVINALAD-SKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIA 330
Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
A+SP+ V Y +T +TL+YANRAK+I
Sbjct: 331 AVSPSSVFYDDTYNTLKYANRAKDI 355
Score = 110 bits (278), Expect = 2e-28
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 49 EGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQV 108
+ VF Q + + F FD + ++Q +V
Sbjct: 37 VDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDET-------STQSEV 89
Query: 109 FNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
F ++ + GYN V AYG TG+GKT TM+GS
Sbjct: 90 FEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS 126
Score = 108 bits (273), Expect = 7e-28
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
F FD + ++Q +VF ++ + GYN V AYG TG+GKT TM+
Sbjct: 72 LKFVFDAVFDET-------STQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124
Query: 71 GS 72
GS
Sbjct: 125 GS 126
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 181 bits (463), Expect = 9e-56
Identities = 46/83 (55%), Positives = 65/83 (78%), Gaps = 1/83 (1%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G+RLKE IN SL+ LG+VIS+L + ++ + IPYRDS +T +LKDSLGGN+KT+MIA
Sbjct: 263 GERLKESIQINSSLLALGNVISALGD-PQRRGSHIPYRDSKITRILKDSLGGNAKTVMIA 321
Query: 224 AISPADVNYSETLSTLRYANRAK 246
+SP+ ++ ETL+TL YA+RA+
Sbjct: 322 CVSPSSSDFDETLNTLNYASRAQ 344
Score = 107 bits (269), Expect = 2e-27
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
+ F F + QE V+ +++A FEG+NA VFAYGQTGSGKT+TM
Sbjct: 50 RHFGFHVV---LAEDA----GQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG 102
Query: 71 GSKATTDNSPDA 82
+ + +
Sbjct: 103 EASVASLLEDEQ 114
Score = 106 bits (266), Expect = 7e-27
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
+ F F + QE V+ +++A FEG+NA VFAYGQTGSGKT+TM
Sbjct: 50 RHFGFHVV---LAEDA----GQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG 102
Query: 144 GSKARNFGE 152
+ + E
Sbjct: 103 EASVASLLE 111
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 172 bits (438), Expect = 7e-55
Identities = 46/106 (43%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Query: 174 NKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYS 233
NKSL LG+VIS+LAE T +PYRDS +T +L+DSLGGN +T ++ SP+ N +
Sbjct: 1 NKSLSALGNVISALAE---GTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEA 57
Query: 234 ETLSTLRYANRAKNIINKPTVNEDPNTR-IIRELHDEITKLKAMLT 278
ET STL + RAK I N +VN + ++ E K KA+ +
Sbjct: 58 ETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKS 103
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 178 bits (453), Expect = 2e-54
Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G L E +INKSL LG+VIS+LAE ST++PYRDS +T +L+DSLGGN +T ++
Sbjct: 245 GAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVI 300
Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
SP+ N SET STL + RAK I
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTI 325
Score = 106 bits (268), Expect = 2e-27
Identities = 29/62 (46%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
K + FD + S SQEQV+ND +V EGYN +FAYGQT SGKT TM
Sbjct: 44 KPYAFDRVFQSS-------TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96
Query: 71 GS 72
G
Sbjct: 97 GK 98
Score = 106 bits (268), Expect = 2e-27
Identities = 29/62 (46%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
K + FD + S SQEQV+ND +V EGYN +FAYGQT SGKT TM
Sbjct: 44 KPYAFDRVFQSS-------TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96
Query: 144 GS 145
G
Sbjct: 97 GK 98
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 179 bits (456), Expect = 2e-54
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 163 AGDRLK-EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 221
+ + +GA+IN+SL+ L I ++ IP+RDS LT +L+D G SK+IM
Sbjct: 249 QNKQTQTDGANINRSLLALKECIRAMDS----DKNHIPFRDSELTKVLRDIFVGKSKSIM 304
Query: 222 IAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 275
IA ISP +TL+TLRY++R KN N + ++
Sbjct: 305 IANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPNPLLGLDSSRTGHHHH 358
Score = 95.4 bits (238), Expect = 7e-23
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 83 HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFT 141
+F D FD + V+ + ++ +E G FAYGQTGSGKT+T
Sbjct: 49 RHEFIVDKV---FDDTV----DNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYT 101
Query: 142 MMGSKARNFGEGK 154
M+GS+ +
Sbjct: 102 MLGSQPYGQSDTP 114
Score = 94.6 bits (236), Expect = 1e-22
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 10 HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFT 68
+F D FD + V+ + ++ +E G FAYGQTGSGKT+T
Sbjct: 49 RHEFIVDKV---FDDTV----DNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYT 101
Query: 69 MMGSKATTDNS 79
M+GS+ +
Sbjct: 102 MLGSQPYGQSD 112
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 177 bits (450), Expect = 1e-53
Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G LKE +INKSL L I +L + +K IP+R LT LKDSLGGN +++
Sbjct: 277 GQVLKEATYINKSLSFLEQAIIALGD---QKRDHIPFRQCKLTHALKDSLGGNCNMVLVT 333
Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
I ETLS+LR+A+R K +
Sbjct: 334 NIYGEAAQLEETLSSLRFASRMKLV 358
Score = 106 bits (267), Expect = 5e-27
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 72 SKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAY 131
+ N+ F D ASQ+ V+ + DVV A +GYN + Y
Sbjct: 59 IRRGVVNNQQTDWSFKLDGVL--------HDASQDLVYETVAKDVVSQALDGYNGTIMCY 110
Query: 132 GQTGSGKTFTMMGSKARNFGEG 153
GQTG+GKT+TMMG+ G
Sbjct: 111 GQTGAGKTYTMMGATENYKHRG 132
Score = 106 bits (267), Expect = 6e-27
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 5 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
N+ F D ASQ+ V+ + DVV A +GYN + YGQTG+G
Sbjct: 65 NNQQTDWSFKLDGVL--------HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAG 116
Query: 65 KTFTMMGS 72
KT+TMMG+
Sbjct: 117 KTYTMMGA 124
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 178 bits (453), Expect = 1e-53
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 163 AGDRLK-EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTI 220
A + + EGA INKSL+ L I +L + P+R+S LT +L+DS +G NS+T
Sbjct: 319 ADRQTRMEGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTC 374
Query: 221 MIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 255
MIA ISP + TL+TLRYA+R K + + +
Sbjct: 375 MIAMISPGISSCEYTLNTLRYADRVKELSHHHHHH 409
Score = 103 bits (260), Expect = 1e-25
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 10 HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
++ F FD + FD ++ S E V+ +V FEG A FAYGQTGSGKT TM
Sbjct: 120 NQAFCFDFA---FDETA----SNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 172
Query: 70 MGSKATTDNSPD 81
G + +
Sbjct: 173 GGDLSGKSQNAS 184
Score = 103 bits (258), Expect = 2e-25
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 83 HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142
++ F FD + FD ++ S E V+ +V FEG A FAYGQTGSGKT TM
Sbjct: 120 NQAFCFDFA---FDETA----SNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 172
Query: 143 MGS 145
G
Sbjct: 173 GGD 175
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 167 bits (426), Expect = 2e-53
Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 172 HINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVN 231
+INKSL LG+VIS+LAE T +PYRDS +T +L+DSL GN +T ++ SP+ N
Sbjct: 3 NINKSLSALGNVISALAE---GTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFN 59
Query: 232 YSETLSTLRYANRAKNIINKPTVNEDPNTR-IIRELHDEI 270
+ET STL + RAK I N +VN + ++ E
Sbjct: 60 EAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEK 99
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 175 bits (447), Expect = 3e-53
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G+RL+E +INKSL LG VI +L +IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 261 GERLRETQNINKSLSCLGDVIYALNTPD-AGKRYIPFRNSKLTYLLQYSLVGDSKTLMFV 319
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKP 252
I P + SETL++LR+A++ +
Sbjct: 320 NIPPDPNHISETLNSLRFASKVNSTKIAK 348
Score = 107 bits (269), Expect = 3e-27
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 13/97 (13%)
Query: 49 EGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQV 108
+ + + + + ++ T+ + +F FD F+PS + +++
Sbjct: 23 DMSHILIEKFNEAKGAQSLTI-----NRNEGRILSYNFQFDMI---FEPSH----TNKEI 70
Query: 109 FNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
F ++ +V ++ +GYN C+FAYGQTGSGKT+TM+ +
Sbjct: 71 FEEIR-QLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA 106
Score = 105 bits (265), Expect = 1e-26
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 2 TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 61
+ +F FD F+PS + +++F ++ +V ++ +GYN C+FAYGQT
Sbjct: 44 NRNEGRILSYNFQFDMI---FEPSH----TNKEIFEEIR-QLVQSSLDGYNVCIFAYGQT 95
Query: 62 GSGKTFTMMGS 72
GSGKT+TM+ +
Sbjct: 96 GSGKTYTMLNA 106
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 171 bits (436), Expect = 3e-51
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 163 AGDRLK-EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTI 220
A + + EGA INKSL+ L I +L + P+R+S LT +L+DS +G NS+T
Sbjct: 299 ADRQTRMEGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTC 354
Query: 221 MIAAISPADVNYSETLSTLRYANRAKNIINKP 252
MIA ISP + TL+TLRYA+R K +
Sbjct: 355 MIATISPGISSCEYTLNTLRYADRVKELSPHS 386
Score = 103 bits (259), Expect = 1e-25
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 10 HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
++ F FD + FD ++ S E V+ +V FEG A FAYGQTGSGKT TM
Sbjct: 100 NQAFCFDFA---FDETA----SNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 152
Query: 70 MGSKATTDNSPDA 82
G + +
Sbjct: 153 GGDLSGKAQNASK 165
Score = 102 bits (257), Expect = 2e-25
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 83 HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142
++ F FD + FD ++ S E V+ +V FEG A FAYGQTGSGKT TM
Sbjct: 100 NQAFCFDFA---FDETA----SNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 152
Query: 143 MGS 145
G
Sbjct: 153 GGD 155
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 172 bits (437), Expect = 4e-51
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
R+ E +IN+SL L +VI +L + K IPYR+S LT LL SLGGNSKT+M
Sbjct: 302 STRMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFI 357
Query: 224 AISPADVNYSETLSTLRYANRAKNI-INKPTVNEDPNTRIIRE 265
+SP + E++ +LR+A + + K N N +
Sbjct: 358 NVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVANS 400
Score = 97.3 bits (243), Expect = 3e-23
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 72 SKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAY 131
S S + F+FD F P S SQ +F + ++ +A +GYN C+FAY
Sbjct: 94 SIDAQAKSKMGQQIFSFDQV---FHPLS----SQSDIFEMVSP-LIQSALDGYNICIFAY 145
Query: 132 GQTGSGKTFTMMGS 145
GQTGSGKT+TM G
Sbjct: 146 GQTGSGKTYTMDGV 159
Score = 96.9 bits (242), Expect = 3e-23
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 2 TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 61
S + F+FD F P S SQ +F + ++ +A +GYN C+FAYGQT
Sbjct: 97 AQAKSKMGQQIFSFDQV---FHPLS----SQSDIFEMVSP-LIQSALDGYNICIFAYGQT 148
Query: 62 GSGKTFTMMGS 72
GSGKT+TM G
Sbjct: 149 GSGKTYTMDGV 159
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 170 bits (432), Expect = 5e-51
Identities = 39/89 (43%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
GDRL+E +INKSL LG VI +L + + IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 258 GDRLRETQNINKSLSCLGDVIHALGQPDST-KRHIPFRNSKLTYLLQYSLTGDSKTLMFV 316
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKP 252
ISP+ + +ETL++LR+A++ +
Sbjct: 317 NISPSSSHINETLNSLRFASKVNSTRLVS 345
Score = 101 bits (255), Expect = 3e-25
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 2 TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 61
T + +F FD FD + VF ++G +V ++ +GYN C+FAYGQT
Sbjct: 43 TKIQNTAQVHEFKFDKI---FDQQD----TNVDVFKEVG-QLVQSSLDGYNVCIFAYGQT 94
Query: 62 GSGKTFTMMGSK 73
GSGKTFTM+
Sbjct: 95 GSGKTFTMLNPG 106
Score = 101 bits (255), Expect = 3e-25
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 75 TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 134
T + +F FD FD + VF ++G +V ++ +GYN C+FAYGQT
Sbjct: 43 TKIQNTAQVHEFKFDKI---FDQQD----TNVDVFKEVG-QLVQSSLDGYNVCIFAYGQT 94
Query: 135 GSGKTFTMMGSK 146
GSGKTFTM+
Sbjct: 95 GSGKTFTMLNPG 106
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 167 bits (425), Expect = 1e-49
Identities = 39/89 (43%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
GDRL+E +INKSL LG VI +L + + IP+R+S LT+LL+ SL G+SKT+M
Sbjct: 314 GDRLRETQNINKSLSALGDVIHALGQPDST-KRHIPFRNSKLTYLLQYSLTGDSKTLMFV 372
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKP 252
ISP+ + +ETL++LR+A++ +
Sbjct: 373 NISPSSSHINETLNSLRFASKVNSTRLVS 401
Score = 100 bits (250), Expect = 2e-24
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 2 TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 61
T + +F FD FD + VF ++G +V ++ +GYN +FAYGQT
Sbjct: 99 TKIQNTAQVHEFKFDKI---FDQQD----TNVDVFKEVG-QLVQSSLDGYNVAIFAYGQT 150
Query: 62 GSGKTFTMMGS 72
GSGKTFTM+
Sbjct: 151 GSGKTFTMLNP 161
Score = 100 bits (250), Expect = 2e-24
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 75 TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 134
T + +F FD FD + VF ++G +V ++ +GYN +FAYGQT
Sbjct: 99 TKIQNTAQVHEFKFDKI---FDQQD----TNVDVFKEVG-QLVQSSLDGYNVAIFAYGQT 150
Query: 135 GSGKTFTMMGS 145
GSGKTFTM+
Sbjct: 151 GSGKTFTMLNP 161
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 159 bits (405), Expect = 3e-47
Identities = 40/85 (47%), Positives = 60/85 (70%), Gaps = 4/85 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
G RL+E HINKSL LG VI++L + +P+R+S LT+LL+DSL G+SKT+M+
Sbjct: 248 GSRLREAQHINKSLSALGDVIAALRS----RQGHVPFRNSKLTYLLQDSLSGDSKTLMVV 303
Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
+SP + N SETL +L++A R +++
Sbjct: 304 QVSPVEKNTSETLYSLKFAERVRSV 328
Score = 96.8 bits (242), Expect = 1e-23
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 5 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
F D F P + SQ+ VF ++ +V + +G+N C+FAYGQTG+G
Sbjct: 42 LHKGKPVSFELDKV---FSPQA----SQQDVFQEVQ-ALVTSCIDGFNVCIFAYGQTGAG 93
Query: 65 KTFTMMGS 72
KT+TM G+
Sbjct: 94 KTYTMEGT 101
Score = 96.8 bits (242), Expect = 1e-23
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 78 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 137
F D F P + SQ+ VF ++ +V + +G+N C+FAYGQTG+G
Sbjct: 42 LHKGKPVSFELDKV---FSPQA----SQQDVFQEVQ-ALVTSCIDGFNVCIFAYGQTGAG 93
Query: 138 KTFTMMGS 145
KT+TM G+
Sbjct: 94 KTYTMEGT 101
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 157 bits (400), Expect = 4e-46
Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Query: 162 EAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 221
+RL+E IN SL TLG VI +L+ K + +PYR+S LT+LL++SLGG++K +M
Sbjct: 294 GERERLRETQAINSSLSTLGLVIMALSN----KESHVPYRNSKLTYLLQNSLGGSAKMLM 349
Query: 222 IAAISPADVNYSETLSTLRYANRAK 246
ISP + N SE+L++LR+A++
Sbjct: 350 FVNISPLEENVSESLNSLRFASKVN 374
Score = 103 bits (260), Expect = 6e-26
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 2 TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 61
+ +P DF+FD F P S Q++VF ++ +V +A +GY C+FAYGQT
Sbjct: 74 SGAPAPPPRHDFSFDRV---FPPGS----GQDEVFEEIA-MLVQSALDGYPVCIFAYGQT 125
Query: 62 GSGKTFTMMGSKATTDNSP 80
GSGKTFTM G
Sbjct: 126 GSGKTFTMEGGPGGDPQLE 144
Score = 101 bits (255), Expect = 3e-25
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 72 SKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAY 131
+ +P DF+FD F P S Q++VF ++ +V +A +GY C+FAY
Sbjct: 71 GTLSGAPAPPPRHDFSFDRV---FPPGS----GQDEVFEEIA-MLVQSALDGYPVCIFAY 122
Query: 132 GQTGSGKTFTMMGSKARN 149
GQTGSGKTFTM G +
Sbjct: 123 GQTGSGKTFTMEGGPGGD 140
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 9e-05
Identities = 49/380 (12%), Positives = 86/380 (22%), Gaps = 146/380 (38%)
Query: 11 KDFTFDHSYWSFDPSSP-----QFASQ-EQVFNDLGMDVVDAAFEGYNAC---------- 54
++ F S + P + Q ++++ND + F YN
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND------NQVFAKYNVSRLQPYLKLRQ 142
Query: 55 ----------VFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYW----------- 93
V G GSGK T + DF +W
Sbjct: 143 ALLELRPAKNVLIDGVLGSGK--TWVALDVCLSYKVQCKMDF---KIFWLNLKNCNSPET 197
Query: 94 ----------SFDPSSPQFASQ----EQVFNDLGM-------------------DVVDA- 119
DP+ + + + + +V +A
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 120 ---AFEGYNACVFAYGQTGSGKTF--TMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHIN 174
AF +C K T S+ L
Sbjct: 258 AWNAFNL--SC----------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD---- 301
Query: 175 KSLVTLGSVIS-SLAELSTKKSTFIP---------YRDSVLTW-----LLKDSLGGNSKT 219
+ L + +L + T P RD + TW + D L +
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL---TTI 358
Query: 220 IMIA----------------AISPADVNYSE-TLSTLRYANR-------AKNIINKPTVN 255
I + ++ P + LS + + + V
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 256 EDPNTRIIRELHDEITKLKA 275
+ P I + +LK
Sbjct: 419 KQPKESTIS-IPSIYLELKV 437
Score = 30.6 bits (68), Expect = 0.63
Identities = 39/248 (15%), Positives = 72/248 (29%), Gaps = 69/248 (27%)
Query: 90 HSYWSFDPSSPQFASQE--QVF-----NDLGMDVVDAAFEGYNACVFA-------YGQ-- 133
H + F+ Q+ ++ VF ++ D D + + +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNF--DCKDV--QDMPKSILSKEEIDHIIMSKD 59
Query: 134 --TGSGKTFTMMGSKARNFGEGKDCVCSIVEAGDR-----LKEGAH---INKSLVTLGSV 183
+G+ + F + SK ++ V VE R L S++T
Sbjct: 60 AVSGTLRLFWTLLSK------QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR-MY 112
Query: 184 ISSLAELSTKKSTFIPY---R----DSVLTWLLKDS---------LGGNSKTIMIA-AIS 226
I L F Y R + LL+ + G+ KT +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 227 PADV--------------NYSETLSTLRYANRAKNIINKP-TVNEDPNTRIIRELHDEIT 271
V N + + L + I+ T D ++ I +H
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 272 KLKAMLTS 279
+L+ +L S
Sbjct: 233 ELRRLLKS 240
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 1e-04
Identities = 51/266 (19%), Positives = 74/266 (27%), Gaps = 87/266 (32%)
Query: 31 SQEQVFNDLGM--------DVVDAAFEGYNACVF---AYGQTGSG--------KT--FTM 69
SQEQ GM + A YG + T F
Sbjct: 1626 SQEQ-----GMGMDLYKTSKAAQDVWN--RADNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 70 MGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVF 129
K +N + F+ D E++F ++ F +
Sbjct: 1679 EKGKRIREN----YSAMIFETIV---DGK----LKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 130 A--YGQ----TGSGKTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHINKS------L 177
A + Q F + K++ AG H S L
Sbjct: 1728 ATQFTQPALTLMEKAAFEDL--KSKGLIPADATF-----AG-------H---SLGEYAAL 1770
Query: 178 VTLGSVIS--SLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSET 235
+L V+S SL E+ F YR + + G S MI AI+P V S +
Sbjct: 1771 ASLADVMSIESLVEV-----VF--YRGMTMQVAVPRDELGRSNYGMI-AINPGRVAASFS 1822
Query: 236 LSTLRYANRAKNIINKPT------VN 255
L+Y + K T VN
Sbjct: 1823 QEALQYVVER---VGKRTGWLVEIVN 1845
Score = 31.9 bits (72), Expect = 0.23
Identities = 43/228 (18%), Positives = 65/228 (28%), Gaps = 84/228 (36%)
Query: 103 ASQEQVFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFTMMGSKARNFGEG-------- 153
+ F + F G C AY T +++ N EG
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGV-RCYEAYPNTSL--PPSILEDSLEN-NEGVPSPMLSI 341
Query: 154 ----KDCVCSIVEA-GDRLKEGAHINKSLVTLGS---VIS----SLAEL----------- 190
++ V V L G + SLV G+ V+S SL L
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVN-GAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 191 ---------STKKSTF--------IPY--------RDSVLTWLLKDSLGGNSKTIMIAAI 225
S +K F P+ D + L+K+++ N+K I I
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI--- 457
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKL 273
P V + S LR + I + D I +L
Sbjct: 458 -P--VYDTFDGSDLR----------------VLSGSISERIVDCIIRL 486
Score = 31.6 bits (71), Expect = 0.31
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 40/145 (27%)
Query: 124 YNACV--------------FAYGQTGSGKTFTMMGSKARNFGEG--KDCVCSIVEAGDRL 167
A + F G+ + + G G+G D + L
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG------GQGNTDDYF-------EEL 173
Query: 168 KEGAHINKSLV-----TLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
++ LV +S L + ++L WL S + ++
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 223 AAIS-P-----ADVNYSETLSTLRY 241
IS P +Y T L +
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGF 258
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding;
HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 34.3 bits (79), Expect = 0.022
Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 8/62 (12%)
Query: 10 HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
+ + D ++ P + Q + V + G G GKT
Sbjct: 4 YWNANLD----TYHPKNVS---QNRALL-TIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55
Query: 70 MG 71
+
Sbjct: 56 VA 57
Score = 34.3 bits (79), Expect = 0.022
Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 8/62 (12%)
Query: 83 HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142
+ + D ++ P + Q + V + G G GKT
Sbjct: 4 YWNANLD----TYHPKNVS---QNRALL-TIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55
Query: 143 MG 144
+
Sbjct: 56 VA 57
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 34.4 bits (79), Expect = 0.029
Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 7 PDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT 66
P +++ D ++ S+ + F+ + +D V+ ++ YG G GK+
Sbjct: 115 PKSYRHIHLSD----IDVNNA---SRMEAFSAI-LDFVEQYPSAEQKGLYLYGDMGIGKS 166
Query: 67 FTMMG 71
+ +
Sbjct: 167 YLLAA 171
Score = 34.4 bits (79), Expect = 0.029
Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 80 PDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT 139
P +++ D ++ S+ + F+ + +D V+ ++ YG G GK+
Sbjct: 115 PKSYRHIHLSD----IDVNNA---SRMEAFSAI-LDFVEQYPSAEQKGLYLYGDMGIGKS 166
Query: 140 FTMMG 144
+ +
Sbjct: 167 YLLAA 171
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein
structure initiative, midwest center for structural
genomics, kinase; 2.30A {Pseudomonas syringae PV}
Length = 228
Score = 33.1 bits (76), Expect = 0.062
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 135 GSGKTFTMMGSKARNFGEGKDCVCSIVEAGDR 166
G GKT+ M+ + +G + +VE R
Sbjct: 16 GVGKTYAMLQAAHAQLRQGVRVMAGVVETHGR 47
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary
complex, hydrolase/DNA complex; HET: ADP; 2.10A
{Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B
1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 31.7 bits (73), Expect = 0.24
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 59 GQTGSGKTFTM 69
G TG+GKTFT+
Sbjct: 39 GATGTGKTFTV 49
Score = 31.7 bits (73), Expect = 0.24
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 132 GQTGSGKTFTM 142
G TG+GKTFT+
Sbjct: 39 GATGTGKTFTV 49
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 31.8 bits (71), Expect = 0.24
Identities = 7/46 (15%), Positives = 14/46 (30%)
Query: 24 PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
SQ + F + + + D+ N + S K +
Sbjct: 17 QKRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62
Score = 31.8 bits (71), Expect = 0.24
Identities = 7/46 (15%), Positives = 14/46 (30%)
Query: 97 PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142
SQ + F + + + D+ N + S K +
Sbjct: 17 QKRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 31.8 bits (73), Expect = 0.25
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 59 GQTGSGKTFTM 69
G TG+GKT TM
Sbjct: 35 GATGTGKTVTM 45
Score = 31.8 bits (73), Expect = 0.25
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 132 GQTGSGKTFTM 142
G TG+GKT TM
Sbjct: 35 GATGTGKTVTM 45
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 30.9 bits (70), Expect = 0.29
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 41 MDVVDAAFEGYNACVFAYGQTGSGKTFT 68
M+V A EG N + TGSGKT
Sbjct: 39 MEVAQPALEGKNIIICL--PTGSGKTRV 64
Score = 30.9 bits (70), Expect = 0.29
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 114 MDVVDAAFEGYNACVFAYGQTGSGKTFT 141
M+V A EG N + TGSGKT
Sbjct: 39 MEVAQPALEGKNIIICL--PTGSGKTRV 64
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 30.4 bits (69), Expect = 0.47
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 7/61 (11%)
Query: 7 PDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT 66
P + D + + + V + ++ +G G GKT
Sbjct: 16 PREILRASLS----DVDLNDDG---RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKT 68
Query: 67 F 67
+
Sbjct: 69 Y 69
Score = 30.4 bits (69), Expect = 0.47
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 7/61 (11%)
Query: 80 PDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT 139
P + D + + + V + ++ +G G GKT
Sbjct: 16 PREILRASLS----DVDLNDDG---RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKT 68
Query: 140 F 140
+
Sbjct: 69 Y 69
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 30.4 bits (68), Expect = 0.72
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 33 EQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
E + + E +F YG TG+GKT +
Sbjct: 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62
Score = 30.4 bits (68), Expect = 0.72
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 106 EQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142
E + + E +F YG TG+GKT +
Sbjct: 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 30.0 bits (67), Expect = 0.94
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 124 YNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVC 158
N + + G+GK+FT R + +G +
Sbjct: 36 SNWTIL--AKPGAGKSFTAKMLLLREYMQGSRVII 68
Score = 28.4 bits (63), Expect = 2.5
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 51 YNACVFAYGQTGSGKTFTMM 70
N + + G+GK+FT
Sbjct: 36 SNWTIL--AKPGAGKSFTAK 53
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 29.8 bits (67), Expect = 1.0
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 109 FNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCV 157
+ V+ F G N + T +GKT + R +G +
Sbjct: 26 LFPPQAEAVEKVFSGKN--LLLAMPTAAGKTLLAEMAMVREAIKGGKSL 72
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily
2 RNA helicase, ATP and dsRNA binding antiviral
signalling pathway; 3.00A {Anas platyrhynchos} PDB:
4a36_A*
Length = 556
Score = 29.5 bits (65), Expect = 1.2
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 41 MDVVDAAFEGYNACVFAYGQTGSGKTF 67
+++ A G NA + A TGSGKTF
Sbjct: 13 IELAQPAINGKNALICA--PTGSGKTF 37
Score = 29.5 bits (65), Expect = 1.2
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 114 MDVVDAAFEGYNACVFAYGQTGSGKTF 140
+++ A G NA + A TGSGKTF
Sbjct: 13 IELAQPAINGKNALICA--PTGSGKTF 37
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 29.3 bits (65), Expect = 1.5
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 33 EQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
E + D + + G TG+GKTF
Sbjct: 26 EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62
Score = 29.3 bits (65), Expect = 1.5
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 106 EQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142
E + D + + G TG+GKTF
Sbjct: 26 EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding
protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP:
c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A*
1hpb_P*
Length = 239
Score = 28.8 bits (65), Expect = 1.9
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARN---FGEG 153
+A+Q+ +++DL +DAA + A + + +GK + G ++ FG+G
Sbjct: 139 AYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDG 194
Score = 28.4 bits (64), Expect = 2.2
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 28 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDN 78
+A+Q+ +++DL +DAA + A + + +GK + G
Sbjct: 139 AYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKK 189
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 28.8 bits (63), Expect = 2.6
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 41 MDVVDAAFEGYNACVFAYGQTGSGKTF 67
+++ A +G N + A TG GKTF
Sbjct: 19 LELALPAMKGKNTIICA--PTGCGKTF 43
Score = 28.8 bits (63), Expect = 2.6
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 114 MDVVDAAFEGYNACVFAYGQTGSGKTF 140
+++ A +G N + A TG GKTF
Sbjct: 19 LELALPAMKGKNTIICA--PTGCGKTF 43
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 28.2 bits (62), Expect = 3.5
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 54 CVFAYGQTGSGKTFTMM 70
G+ G+GKT T+
Sbjct: 46 RATLLGRPGTGKTVTLR 62
Score = 28.2 bits (62), Expect = 3.5
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 127 CVFAYGQTGSGKTFTMM 143
G+ G+GKT T+
Sbjct: 46 RATLLGRPGTGKTVTLR 62
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
PF02562, ST genomics, PSI-2, protein structure
initiative; 2.35A {Corynebacterium glutamicum atcc
13032}
Length = 208
Score = 27.5 bits (62), Expect = 3.6
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 125 NACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCSI------VEAGDRL 167
N VF G GSGKT+ M + + V I VEAG++L
Sbjct: 22 NTIVFGLGPAGSGKTYLAMAKAVQALQSKQ--VSRIILTRPAVEAGEKL 68
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 28.0 bits (62), Expect = 3.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 61 TGSGKTFTMM 70
TGSGKT T
Sbjct: 309 TGSGKTLTSF 318
Score = 28.0 bits (62), Expect = 3.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 134 TGSGKTFTMM 143
TGSGKT T
Sbjct: 309 TGSGKTLTSF 318
>3bos_A Putative DNA replication factor; P-loop containing nucleoside
triphosphate hydrolases, struct genomics; HET: MSE CDP;
1.75A {Shewanella amazonensis} PDB: 3sc3_A
Length = 242
Score = 27.6 bits (62), Expect = 4.3
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 12 DFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT 66
D TF SY+ + + + A+ +G ++ +G SG+T
Sbjct: 24 DETFT-SYYPAAGNDELIGALKSA----------ASGDGVQ-AIYLWGPVKSGRT 66
Score = 27.6 bits (62), Expect = 4.3
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 85 DFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT 139
D TF SY+ + + + A+ +G ++ +G SG+T
Sbjct: 24 DETFT-SYYPAAGNDELIGALKSA----------ASGDGVQ-AIYLWGPVKSGRT 66
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase;
HET: ANP; 2.14A {Mus musculus}
Length = 555
Score = 27.9 bits (61), Expect = 4.4
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 41 MDVVDAAFEGYNACVFAYGQTGSGKTF 67
+++ A +G N + A TG GKTF
Sbjct: 10 LELALPAKKGKNTIICA--PTGCGKTF 34
Score = 27.9 bits (61), Expect = 4.4
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 114 MDVVDAAFEGYNACVFAYGQTGSGKTF 140
+++ A +G N + A TG GKTF
Sbjct: 10 LELALPAKKGKNTIICA--PTGCGKTF 34
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 26.8 bits (60), Expect = 5.4
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 20/70 (28%)
Query: 70 MGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVF 129
MG + D +FD F + V + ++
Sbjct: 1 MGHHHHHHSHMD---YPSFD----KFLGTENAEL-------------VYVLRHKHGQFIY 40
Query: 130 AYGQTGSGKT 139
+G+ G+GK+
Sbjct: 41 VWGEEGAGKS 50
>3tql_A Arginine-binding protein; transport and binding proteins, transport
protein; HET: MSE ARG; 1.59A {Coxiella burnetii}
Length = 227
Score = 26.8 bits (60), Expect = 7.7
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARN---FGEG 153
++ S+E DL VDA + + + + + ++G + FG+G
Sbjct: 136 RYPSEEDALMDLTSGRVDAVVGDTPL-IKQWLKQNGRREYVLIGKPVNDPNYFGKG 190
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.381
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,200,264
Number of extensions: 242354
Number of successful extensions: 973
Number of sequences better than 10.0: 1
Number of HSP's gapped: 873
Number of HSP's successfully gapped: 129
Length of query: 279
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 187
Effective length of database: 4,133,061
Effective search space: 772882407
Effective search space used: 772882407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.7 bits)