RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy37
(279 letters)
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 176 bits (447), Expect = 6e-54
Identities = 91/327 (27%), Positives = 136/327 (41%), Gaps = 69/327 (21%)
Query: 5 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
+S +A FTFD + Q +F+ VD GYN VFAYGQTG+G
Sbjct: 40 DSKEAQGSFTFDRVFD-------MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAG 92
Query: 65 KTFTMMGSKATTDNS-----------------PDAHKDFTF---------DHSYWSFDPS 98
K++TMMG+ + A+ ++T + P
Sbjct: 93 KSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQ 152
Query: 99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK---TFTMMGSKARNF----- 150
+ E+ + + + + V+ + G T M ++
Sbjct: 153 NDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFV 212
Query: 151 ----------GEGKDCVCSIVE------------AGDRLKEGAHINKSLVTLGSVISSLA 188
G K +V+ +G L+E INKSL LG VI++L
Sbjct: 213 ITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINAL- 271
Query: 189 ELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248
+ KS+ +PYRDS LT +L++SLGGNS+T +I SP+ N +ETLSTLR+ RAK+I
Sbjct: 272 --TDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSI 329
Query: 249 INKPTVNEDPNTRIIRELHDEITKLKA 275
NK VN + + EL + K K
Sbjct: 330 KNKAKVNAELS---PAELKQMLAKAKT 353
Score = 69.6 bits (169), Expect = 3e-14
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 60 QTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDA 119
++G T G T +S +A FTFD + Q +F+ VD
Sbjct: 22 ESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFD-------MSCKQSDIFDFSIKPTVDD 74
Query: 120 AFEGYNACVFAYGQTGSGKTFTMM 143
GYN VFAYGQTG+GK++TMM
Sbjct: 75 ILNGYNGTVFAYGQTGAGKSYTMM 98
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 166 bits (421), Expect = 2e-50
Identities = 85/293 (29%), Positives = 114/293 (38%), Gaps = 66/293 (22%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
K + FD + S SQEQV+ND +V EGYN +FAYGQT SGKT TM
Sbjct: 42 KPYAFDRVFQSS-------TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 94
Query: 71 GSKATTDNSP----------------DAHKDFTFDHSY--------------WSFDPSSP 100
G + D + +F SY + S
Sbjct: 95 GKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVH 154
Query: 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS-----------KARN 149
+ ++ V + E + T S K N
Sbjct: 155 EDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQEN 214
Query: 150 FGEGKDCVCSIV--------------EAGDRLKEGAHINKSLVTLGSVISSLAELSTKKS 195
+ + G L E +INKSL LG+VIS+LAE S
Sbjct: 215 TQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE----GS 270
Query: 196 TFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248
T++PYRDS +T +L+DSLGGN +T ++ SP+ N SET STL + RAK I
Sbjct: 271 TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 162 bits (411), Expect = 8e-49
Identities = 66/293 (22%), Positives = 106/293 (36%), Gaps = 66/293 (22%)
Query: 10 HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMD-VVDAAFEGYNACVFAYGQTGSGKTFT 68
+F D FD + V+ + ++D G FAYGQTGSGKT+T
Sbjct: 49 RHEFIVDKV---FDDT----VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYT 101
Query: 69 MMGSKATTDNS-----PDAHKDFTFDHSYWSFDPSSPQFASQEQVFND------------ 111
M+GS+ + A D + + D + F S +++
Sbjct: 102 MLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMV 161
Query: 112 -------------------------------LGMDVVDAAFEGYNA------CVFAYGQT 134
G+ + N +
Sbjct: 162 AALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLK 221
Query: 135 GSGKTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKK 194
K ++ + + ++ + +GA+IN+SL+ L I ++
Sbjct: 222 DINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDS----D 277
Query: 195 STFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN 247
IP+RDS LT +L+D G SK+IMIA ISP +TL+TLRY++R KN
Sbjct: 278 KNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330
Score = 61.2 bits (147), Expect = 2e-11
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 63 SGKTFTMMGSKATTDNSPDA-HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMD-VVDAA 120
+ T + + D + +F D FD + V+ + ++D
Sbjct: 28 NNCTLYIDEPRYKVDMTKYIERHEFIVDKV---FDDT----VDNFTVYENTIKPLIIDLY 80
Query: 121 FEGYNACVFAYGQTGSGKTFTMMGSKARNFGE 152
G FAYGQTGSGKT+TM+GS+ +
Sbjct: 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSD 112
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 160 bits (406), Expect = 1e-47
Identities = 71/294 (24%), Positives = 116/294 (39%), Gaps = 63/294 (21%)
Query: 5 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
S + F+FD + +SQ +F + ++ +A +GYN C+FAYGQTGSG
Sbjct: 86 KSKMGQQIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSG 137
Query: 65 KTFTMMGSKATTDNSPDAHKD-FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEG 123
KT+TM G + P F Y + A+ +++N++ D++ +
Sbjct: 138 KTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKD 197
Query: 124 YNACVFAYGQTGSGKTFTMMGS-------------------------------------- 145
+ + + +
Sbjct: 198 MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL 257
Query: 146 --KARNFGEGKDCVCSIVEAG----------DRLKEGAHINKSLVTLGSVISSLAELSTK 193
R+ + + V SI R+ E +IN+SL L +VI +L +
Sbjct: 258 ELIGRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILALLQ---- 313
Query: 194 KSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN 247
K IPYR+S LT LL SLGGNSKT+M +SP + E++ +LR+A +
Sbjct: 314 KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 367
Score = 53.0 bits (126), Expect = 1e-08
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 66 TFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYN 125
T+T S DA +SFD +SQ +F + ++ +A +GYN
Sbjct: 67 TWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYN 125
Query: 126 ACVFAYGQTGSGKTFTMMGS 145
C+FAYGQTGSGKT+TM G
Sbjct: 126 ICIFAYGQTGSGKTYTMDGV 145
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 155 bits (391), Expect = 2e-45
Identities = 83/296 (28%), Positives = 111/296 (37%), Gaps = 70/296 (23%)
Query: 10 HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
++ F FD + FD + AS E V+ +V FEG A FAYGQTGSGKT TM
Sbjct: 79 NQAFCFDFA---FDET----ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 131
Query: 70 MGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFA--------------SQEQVFNDLGMD 115
+ S +A K S F + +VF+ L
Sbjct: 132 G--GDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKK 189
Query: 116 VVDAAFEGYNACVFAYGQT-------GSGKTFTMMGSKARNFGE---------------- 152
E V G MGS R G+
Sbjct: 190 AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQI 249
Query: 153 ------------------GKDCVCSIVEAGDRLK-EGAHINKSLVTLGSVISSLAELSTK 193
G + A + + EGA INKSL+ L I +L +
Sbjct: 250 LLRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ---- 305
Query: 194 KSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248
P+R+S LT +L+DS +G NS+T MIA ISP + TL+TLRYA+R K +
Sbjct: 306 NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 361
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 148 bits (375), Expect = 3e-43
Identities = 73/328 (22%), Positives = 115/328 (35%), Gaps = 69/328 (21%)
Query: 5 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACV--------- 55
D K +D FD + A+Q+ VF D +V +A +GYN C+
Sbjct: 36 WKDDKAKQHMYDRV---FDGN----ATQDDVFEDTK-YLVQSAVDGYNVCIFAYGQTGSG 87
Query: 56 FAYGQTGSGKT------------------------------FTMMGSKATTDNSPDAHKD 85
+ G+ + P K
Sbjct: 88 KTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKR 147
Query: 86 FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
D S S + + + + + S ++ ++
Sbjct: 148 LKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSV 207
Query: 146 KARNFGEGKDC----------------VCSIVEAGDRLKEGAHINKSLVTLGSVISSLAE 189
+ V AG++LKE INKSL LG VIS+L+
Sbjct: 208 IIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS 267
Query: 190 LSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNII 249
+ IPYR+ LT L+ DSLGGN+KT+M ISPA+ N ET ++L YA+R ++I+
Sbjct: 268 ----GNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIV 323
Query: 250 NKPTVNEDPNTRIIRELHDEITKLKAML 277
N P+ N + + L ++ K
Sbjct: 324 NDPSKNVSS--KEVARLKKLVSYWKEQA 349
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 129 bits (325), Expect = 4e-36
Identities = 38/83 (45%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
RL+E +INKSL LG VI +L + + K IP+R+S LT+LL+ SL G+SKT+M I
Sbjct: 258 RLRETQNINKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMFVNI 316
Query: 226 SPADVNYSETLSTLRYANRAKNI 248
SP+ + +ETL++LR+A++ +
Sbjct: 317 SPSSSHINETLNSLRFASKVNST 339
Score = 45.0 bits (105), Expect = 4e-06
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 73 KATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYG 132
+ T + +F FD FD + VF ++G +V ++ +GYN C+FAYG
Sbjct: 39 EVTKIQNTAQVHEFKFDK---IFDQQD----TNVDVFKEVG-QLVQSSLDGYNVCIFAYG 90
Query: 133 QTGSGKTFTMM 143
QTGSGKTFTM+
Sbjct: 91 QTGSGKTFTML 101
Score = 44.6 bits (104), Expect = 5e-06
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
+F FD FD + VF ++G +V ++ +GYN C+FAYGQTGSGKTFTM+
Sbjct: 50 HEFKFDKI---FDQQD----TNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTML 101
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 125 bits (314), Expect = 2e-34
Identities = 65/103 (63%), Positives = 79/103 (76%), Gaps = 8/103 (7%)
Query: 152 EGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDS 203
G + S G RLKEGA+INKSL TLG VIS+LAE+ + KK+ FIPYRDS
Sbjct: 247 AGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDS 306
Query: 204 VLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 246
VLTWLL+++LGGNS+T M+AA+SPAD+NY ETLSTLRYA+RAK
Sbjct: 307 VLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 349
Score = 69.2 bits (168), Expect = 4e-14
Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 4 DNSPDAHKDFTFDHSYWSFD-PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTG 62
+ K F+FD+SYWS P +ASQ+QV+ D+G +++ AFEGYN C+FAYGQTG
Sbjct: 38 KQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTG 97
Query: 63 SGKTFTMMGS 72
+GK++TMMG
Sbjct: 98 AGKSYTMMGK 107
Score = 69.2 bits (168), Expect = 4e-14
Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 77 DNSPDAHKDFTFDHSYWSFD-PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTG 135
+ K F+FD+SYWS P +ASQ+QV+ D+G +++ AFEGYN C+FAYGQTG
Sbjct: 38 KQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTG 97
Query: 136 SGKTFTMMGS 145
+GK++TMMG
Sbjct: 98 AGKSYTMMGK 107
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 125 bits (313), Expect = 3e-34
Identities = 49/100 (49%), Positives = 69/100 (69%), Gaps = 4/100 (4%)
Query: 152 EGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKD 211
G + + R +E +IN+SL+TLG VI++L E ++ +PYR+S LT +L+D
Sbjct: 250 AGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQD 305
Query: 212 SLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINK 251
SLGG ++T +IA ISPA +N ETLSTL YA+RAKNI+NK
Sbjct: 306 SLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 345
Score = 60.4 bits (145), Expect = 3e-11
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 5 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
+ K +TFD + + Q V+ + ++D GYN +FAYGQTG+G
Sbjct: 41 ADKSSRKTYTFDMVFGAS-------TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTG 93
Query: 65 KTFTMMGSKATTDNSPDAH 83
KTFTM G ++ +
Sbjct: 94 KTFTMEGERSPNEEYTWEE 112
Score = 60.0 bits (144), Expect = 5e-11
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 78 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 137
+ K +TFD + + Q V+ + ++D GYN +FAYGQTG+G
Sbjct: 41 ADKSSRKTYTFDMVFGAS-------TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTG 93
Query: 138 KTFTMMGSKARNFGEGKDC 156
KTFTM G ++ N +
Sbjct: 94 KTFTMEGERSPNEEYTWEE 112
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 34.3 bits (79), Expect = 0.011
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 92 YWSFDPSSPQFASQEQV--FNDLGMDVVDAAF---EGYNACVFAYGQTGSGKTFTMMGSK 146
+ + +P+F G+ VVD +G +F G G GKT ++
Sbjct: 32 FAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLF--GGAGVGKT-VLIMEL 88
Query: 147 ARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLG 181
N + G+R +EG + ++ G
Sbjct: 89 INNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG 123
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein,
SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 28.9 bits (65), Expect = 0.22
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 221 MIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTR--IIRELHDEITKLKA 275
+ A+ ADVN + K+ I+ + N R I + E+ K+K
Sbjct: 39 VCTALLEADVNIK---LVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKVKV 92
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 29.2 bits (65), Expect = 0.55
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 109 FNDLGMDVVDAAF---EGYNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCSIVEAGD 165
DL V+D A G + +GKT + DCV ++ +
Sbjct: 26 TEDLTARVLDLASPIGRGQRGLIV--APPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 83
Query: 166 RLKE 169
R +E
Sbjct: 84 RPEE 87
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 26.6 bits (59), Expect = 1.0
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 249 INKPTVNEDPNTRIIRELHDEITKL 273
I + E IR+L+DEI KL
Sbjct: 38 IQNAGLGEFR----IRDLNDEINKL 58
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 28.2 bits (62), Expect = 1.3
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 14/98 (14%)
Query: 116 VVDAAF-----EGYNACVFAYGQTGSGKT---------FTMMGSKARNFGEGKDCVCSIV 161
+ D A+ + + + G++G+GKT ++ S + +
Sbjct: 77 IADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSF 136
Query: 162 EAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIP 199
G+ K+ N L G+ + + S++ FI
Sbjct: 137 SYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIR 174
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 26.9 bits (58), Expect = 2.5
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 2/98 (2%)
Query: 127 CVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISS 186
VF G G GKT + + G + + G I +VTL
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGV--PVDGFYTEEVRQGGRRIGFDVVTLSGTRGP 60
Query: 187 LAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAA 224
L+ + + + S + ++ A
Sbjct: 61 LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNA 98
>d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Cellulomonas sp. [TaxId: 40001]}
Length = 266
Score = 26.9 bits (59), Expect = 2.8
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 160 IVEAGDRLKE--GAHINKSLVTLGSVISSLAELSTKKSTFIPYRD 202
A D + + G + + LGS AEL + +P +
Sbjct: 14 ARAAADHIAQATGVEGHDMALVLGSGWGGAAELLGEVVAEVPTHE 58
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 26.7 bits (57), Expect = 2.9
Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 115 DVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCSIV 161
+ E N + TG GKT M + V +
Sbjct: 16 VIYAKCKET-NCLIVL--PTGLGKTLIAMMIAEYRLTKYGGKVLMLA 59
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 25.8 bits (55), Expect = 3.6
Identities = 15/117 (12%), Positives = 31/117 (26%)
Query: 132 GQTGSGKTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELS 191
G+GKT + + + L E L + A S
Sbjct: 14 FHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFSAHGS 73
Query: 192 TKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248
++ ++ +L+ + N + I++ D + RA
Sbjct: 74 GREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANES 130
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 26.6 bits (58), Expect = 4.5
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 43 VVDAAF-----EGYNACVFAYGQTGSGKTFTM 69
V + A+ + N + G++G+GKT +
Sbjct: 80 VAEEAYKQMARDERNQSIIVSGESGAGKTVSA 111
Score = 26.6 bits (58), Expect = 4.5
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 116 VVDAAF-----EGYNACVFAYGQTGSGKTFTM 142
V + A+ + N + G++G+GKT +
Sbjct: 80 VAEEAYKQMARDERNQSIIVSGESGAGKTVSA 111
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 25.8 bits (56), Expect = 6.7
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 43 VVDAAF-----EGYNACVFAYGQTGSGKTFT 68
+ D A+ + N + G++G+GKT
Sbjct: 109 ISDNAYQFMLTDRENQSILITGESGAGKTVN 139
Score = 25.8 bits (56), Expect = 6.7
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 116 VVDAAF-----EGYNACVFAYGQTGSGKTFT 141
+ D A+ + N + G++G+GKT
Sbjct: 109 ISDNAYQFMLTDRENQSILITGESGAGKTVN 139
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 25.8 bits (56), Expect = 7.0
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 21/104 (20%)
Query: 43 VVDAAF-----EGYNACVFAYGQTGSGKT---------FTMMGSKATTDNSPDAHKDF-- 86
+ + A+ N CV G++G+GKT T + S + + +
Sbjct: 72 LANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDS 131
Query: 87 -----TFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYN 125
F ++ + +S +F ++ + + Y
Sbjct: 132 NPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYL 175
Score = 25.8 bits (56), Expect = 8.0
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 116 VVDAAF-----EGYNACVFAYGQTGSGKTFTM 142
+ + A+ N CV G++G+GKT
Sbjct: 72 LANDAYRSMRQSQENQCVIISGESGAGKTEAS 103
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor
large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Length = 203
Score = 25.1 bits (55), Expect = 8.7
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 38 DLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
DLG DA+ + A G+G TM+
Sbjct: 10 DLGAGSTDASIINPKGDIIATHLAGAGDMVTMI 42
Score = 25.1 bits (55), Expect = 8.7
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 111 DLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
DLG DA+ + A G+G TM+
Sbjct: 10 DLGAGSTDASIINPKGDIIATHLAGAGDMVTMI 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.381
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,005,189
Number of extensions: 44020
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 48
Length of query: 279
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,254,276
Effective search space: 244583820
Effective search space used: 244583820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)