RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy370
(111 letters)
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 44.5 bits (106), Expect = 9e-08
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 44 THDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICG 87
T + E Y C+ C + S+ +H + + + C C
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCF 47
Score = 38.3 bits (90), Expect = 2e-05
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 24 QCPVCKKIYTDQQLFQNHLET--HDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+C VC ++YT F H T N Y C C +F K +M HV
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 42.5 bits (101), Expect = 6e-07
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 39 QNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICG 87
+ TH E Y C C +F M+ H+ + F C C
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCD 52
Score = 41.7 bits (99), Expect = 1e-06
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMD--YSCEHCDMQFNCKSDMRKHV 70
+C +C +T + H+ E + C HCD KSD+ H+
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 42.0 bits (99), Expect = 1e-06
Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 4/67 (5%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDN---EMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERG 80
QC +C + H H + + CE C +F + H
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS-HPALLL 67
Query: 81 FVCEICG 87
E G
Sbjct: 68 APQESSG 74
Score = 35.5 bits (82), Expect = 3e-04
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 51 YSCEHCDMQFNCKSDMRKHVHSH-LSMEERGFVCEICG 87
CE C K+ + H H ++ F CE CG
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCG 45
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 40.6 bits (96), Expect = 5e-06
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVC 83
QC +C + ++ H+ TH E ++C+ C +F + ++H +
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ---HILPILE 61
Query: 84 EICG 87
+
Sbjct: 62 DKVE 65
Score = 32.1 bits (74), Expect = 0.008
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 51 YSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICG 87
+ C C F+ + H+ +H E+ F C+ICG
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG--EKPFACDICG 38
Score = 30.2 bits (69), Expect = 0.035
Identities = 4/47 (8%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHV 70
C +C + + + H + + + + + + + V
Sbjct: 33 ACDICGRKFARSDERKRHRDIQ-HILPILEDKVEELLSKNYHLENEV 78
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 39.1 bits (92), Expect = 2e-05
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSC--EHCDMQFNCKSDMRKHVHSHLSMEERGF 81
P C K+YT + HL TH E Y C E CD +F ++ +H H + F
Sbjct: 19 DYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG--AKPF 76
Query: 82 VCEICG 87
C +C
Sbjct: 77 QCGVCN 82
Score = 31.4 bits (72), Expect = 0.014
Identities = 8/48 (16%), Positives = 14/48 (29%)
Query: 26 PVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
C + H H + C C+ F+ + H+ H
Sbjct: 51 EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 37.8 bits (87), Expect = 4e-05
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 25 CPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
C C + + H+ TH + Y C +C+ F K ++ KH+ S
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 27.0 bits (59), Expect = 0.35
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 51 YSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICGH 88
Y CE C ++ S ++KH+ +H R + C C
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTD--VRPYHCTYCNF 37
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 36.8 bits (86), Expect = 1e-04
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 25 CPVCKKIYTDQQLFQNHL-ETHDNEMDYSCEH--CDMQFNCKSDMRKHVHSHLSMEERGF 81
P C +I++++Q +H H ++ +SC C FN K +++H+ H R +
Sbjct: 12 FPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD--TRDY 69
Query: 82 VCEICG 87
+CE G
Sbjct: 70 ICEFSG 75
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 36.7 bits (86), Expect = 2e-04
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVC 83
C +C KI+ D H +H E YSC C ++F K M HV SH + ++C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 84 EICG 87
+ CG
Sbjct: 69 QSCG 72
Score = 29.0 bits (66), Expect = 0.11
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMD--YSCEHCDMQFNCKSDMRKHVH 71
CPVC + + H+ +HD + Y C+ C F+ + H+
Sbjct: 37 SCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 27.1 bits (61), Expect = 0.65
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 51 YSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICG 87
+CE C F + +H SH E+ + C +CG
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSG--EKPYSCPVCG 42
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 36.4 bits (85), Expect = 2e-04
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 25 CPVCKKIYTDQQLFQNHLETHDNEMDYSCEH--CDMQFNCKSDMRKHVHSHL-SMEERGF 81
C K + + H +H ++ Y C H CD +F+ S +++H H ++
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 65
Query: 82 VCEICG 87
C G
Sbjct: 66 SCSFVG 71
Score = 28.0 bits (63), Expect = 0.25
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 28 CKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHV-HSH 73
C K ++ + H + H + C + KHV H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 36.4 bits (85), Expect = 2e-04
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSC--EHCDMQFNCKSDMRKHVHSHLSMEERGF 81
C K YT + HL TH E Y C + C +F ++ +H H R F
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG--HRPF 66
Query: 82 VCEICG 87
C+ C
Sbjct: 67 QCQKCD 72
Score = 31.0 bits (71), Expect = 0.023
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 39 QNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHL 74
H H + C+ CD F+ + H+ H
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.5 bits (80), Expect = 5e-04
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ E + C+ C M F+ + KH+ SH
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 34.4 bits (80), Expect = 7e-04
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 25 CPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
C C + + + H H + + C +C S++ KH+
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 26.7 bits (60), Expect = 0.65
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 44 THDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICG 87
+ + C C + K+ +R H H + +R F C C
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCT--DRPFKCNYCS 44
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 34.7 bits (81), Expect = 9e-04
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
QC +C + ++ H+ TH E ++C+ C +F + ++H H
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 33.6 bits (78), Expect = 0.003
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 28 CKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICG 87
C + ++ H+ H + + C C F+ + H+ +H E+ F C+ICG
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--EKPFACDICG 69
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 35.8 bits (82), Expect = 0.001
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 61 NCKSDMRKHVHSHLSMEERG-FVCEICGHVVDE 92
CK K V G VC +CG V+ +
Sbjct: 26 ECKVYPPKIVERF----SEGDVVCALCGLVLSD 54
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 34.5 bits (78), Expect = 0.002
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVC 83
QC +C + +H N C +C ++F ++H E + C
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHESKC---EYKKLTC 72
Query: 84 EICG 87
C
Sbjct: 73 LECM 76
Score = 31.8 bits (71), Expect = 0.017
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 22 ASQCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH---VHSHLSM 76
A+ CP C + +L Q H E+ +C C F + +H VH+ +M
Sbjct: 42 AAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNM 98
Score = 28.3 bits (62), Expect = 0.25
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 46 DNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICG 87
+N+ Y C C+ + + + H VC C
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLC----RNAAVCPYCS 49
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 33.6 bits (78), Expect = 0.002
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH--VHSHLSMEERGF 81
+C VC K ++ + + H+ H Y C+ CD S + KH +HS +ER F
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS----DERPF 65
Query: 82 VCEICG 87
C+IC
Sbjct: 66 KCQICP 71
Score = 33.2 bits (77), Expect = 0.004
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 25 CPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
C C D HL H +E + C+ C S + H+ SH
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 28.9 bits (66), Expect = 0.15
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 44 THDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICG 87
+ + + CE C F+ K ++ H+ H + + C+ C
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTG--VKPYKCKTCD 43
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 34.1 bits (77), Expect = 0.003
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 26 PVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEI 85
+ D+ + L + C C M F+ +++H+ E VC +
Sbjct: 50 LIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT----EHTKVCPV 105
Query: 86 CGH 88
C
Sbjct: 106 CKK 108
Score = 32.6 bits (73), Expect = 0.009
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 25 CPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHV 70
CP+C ++ + H+ ++ C C +F HV
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEHT--KVCPVCKKEFTSTDSALDHV 120
Score = 25.3 bits (54), Expect = 4.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDN 47
CPVCKK +T +H+ N
Sbjct: 102 VCPVCKKEFTSTDSALDHVCKKHN 125
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.004
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 31/92 (33%)
Query: 39 QNHLETHDNEMDYSCEHCDM----------QFNCK--SDMRKHVHSHLSMEERGFVCEIC 86
+H++ E Y + D+ F+CK DM K + LS EE
Sbjct: 4 HHHMDFETGEHQYQYK--DILSVFEDAFVDNFDCKDVQDMPKSI---LSKEE-------I 51
Query: 87 GHVVDEMPVATQS-------SKYPGQQNQLFM 111
H++ + + + Q F+
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 32.9 bits (76), Expect = 0.004
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMD----YSCEHCDMQFNCKSDMRKHVHSHLSMEER 79
C C K + +QL H + + + + C C F ++ M +H +
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAG--PD 74
Query: 80 GFVCEICG 87
G E G
Sbjct: 75 GVEGENSG 82
Score = 30.2 bits (69), Expect = 0.039
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 38 FQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH--VHSHLSMEERGFVCEICG 87
+ TH E Y+C HCD F K + H + + FVC CG
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCG 54
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 33.3 bits (77), Expect = 0.005
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 48 EMDYSCEHCDMQFNCKSDMRKHV-HSHLSMEERGFVCEICG 87
E D + C +F+ + + H+ H+ E + FVC G
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG 41
Score = 33.3 bits (77), Expect = 0.007
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 24 QCPVCKKIYTDQQLFQNHLET---HDNEMDYSCEHCDM-----QFNCKSDMRKHVHSH 73
+ C + + Q+ +H+ + H ++ C F + + H+ H
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62
Score = 29.1 bits (66), Expect = 0.19
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 26 PVCKKIYTDQQLFQNHLE-THDNEMDYSCEH--CDMQFNCKSDMRKHVHSH 73
C K +++ H TH NE Y C+ C ++ S +RKHV +
Sbjct: 103 EGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 28.7 bits (65), Expect = 0.25
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 25 CPVCKKIYTDQQLFQNHLETHDNEMDYSC--EHCDMQFNCKSDMRKHVHSH 73
C + + Q + H+ H E + C E C ++ +++ H+ SH
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 32.9 bits (76), Expect = 0.007
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 25 CPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
C VC++ + + + H+ +H EM Y C C QF K D++ H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 29.8 bits (68), Expect = 0.086
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+CP C K + + + H H E + C C + K ++ +H
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 28.2 bits (64), Expect = 0.32
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 24 QCPVCKKIYTDQQLFQNH---LETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERG 80
+CP C K Y ++ H + +E ++C C F + ++R H+ SH E
Sbjct: 37 ECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG--EMP 94
Query: 81 FVCEICG 87
+ C C
Sbjct: 95 YKCSSCS 101
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 33.0 bits (76), Expect = 0.007
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ + ++ + CD F+ ++ HV
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTME 48
Score = 32.6 bits (75), Expect = 0.010
Identities = 7/59 (11%), Positives = 13/59 (22%), Gaps = 9/59 (15%)
Query: 24 QCPVCKKIYTDQQLFQNHLETH---------DNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
C + ++ H+ C F K + H+ H
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Score = 31.5 bits (72), Expect = 0.023
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 24 QCPV--CKKIYTDQQLFQNHLETHDNEMDYSCEH--CDMQFNCKSDMRKHVHSH 73
CP C KI+ + + H TH E + CE CD +F SD +KH+H H
Sbjct: 92 PCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 30.9 bits (71), Expect = 0.008
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ E Y CE C +F ++ H+ H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 30.6 bits (70), Expect = 0.012
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ E Y CE C +F + +R HV H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 32.1 bits (72), Expect = 0.012
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 38 FQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHS-HLSMEER-GFVCEICG 87
++ + E Y C++C Q + HV S H ++ +VC C
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECN 57
Score = 24.3 bits (52), Expect = 6.6
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMD----YSCEHCDMQFNCKSDMRKHVHSH 73
+C C D +F H+++ + Y C C+ + +H +
Sbjct: 20 ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKY 73
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 32.9 bits (74), Expect = 0.014
Identities = 10/52 (19%), Positives = 13/52 (25%)
Query: 22 ASQCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
I + T + Y C C D+ HV SH
Sbjct: 152 TRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 31.7 bits (73), Expect = 0.015
Identities = 8/46 (17%), Positives = 20/46 (43%)
Query: 28 CKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
C++ ++ + H H + C+ C +F+ ++ H +H
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 29.8 bits (68), Expect = 0.082
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 26 PVCKKIYTDQQLFQNHLETHDNEMDYSCE--HCDMQFNCKSDMRKHVHSHLSMEERGFVC 83
P C K Y Q H H E Y C+ C+ +F+ +++H H + F C
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG--VKPFQC 69
Query: 84 EICG 87
+ C
Sbjct: 70 KTCQ 73
Score = 29.4 bits (67), Expect = 0.099
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCE--HCDMQFNCKSDMRKHVHSH 73
QC C++ ++ + H TH E +SC C +F ++ +H + H
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 30.6 bits (70), Expect = 0.016
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH---VHSHLSMEERGFVCEICG 87
+ + Y C+ C F+ + H VH+ ER C++
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT----SERPHKCQVWV 48
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 30.9 bits (71), Expect = 0.019
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH--VHSHLSMEERGF 81
C +C K + HL H + Y C++C +F+ KSDM+KH +H+ E+
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT----GEKPH 58
Query: 82 VCEICG 87
C++CG
Sbjct: 59 KCQVCG 64
Score = 23.9 bits (53), Expect = 6.6
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 51 YSCEHCDMQFNCKSDMRKH--VHSHLSMEERGFVCEICG 87
+ C+ C F S + H +HS + R + C+ CG
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHS----DTRPYPCQYCG 36
Score = 23.5 bits (52), Expect = 9.8
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 25 CPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
C C K + + + H H E + C+ C F+ S++ H
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 30.5 bits (70), Expect = 0.022
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 39 QNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICG 87
+H ++ Y C+ C F K ++ H H E+ + C ICG
Sbjct: 6 HHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTG--EKPYRCNICG 52
Score = 30.5 bits (70), Expect = 0.023
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 25 CPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
C C+ + + +H H E Y C C QFN ++++ H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 31.3 bits (70), Expect = 0.028
Identities = 6/62 (9%), Positives = 15/62 (24%)
Query: 17 YTIFVASQCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSM 76
+ ++ D + C +C F D+ H+
Sbjct: 47 DDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY 106
Query: 77 EE 78
++
Sbjct: 107 QK 108
Score = 27.0 bits (59), Expect = 0.95
Identities = 4/54 (7%), Positives = 15/54 (27%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICGHVVDEMP 94
+ + C+ C ++ ++ H++ + + P
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKP 63
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 31.3 bits (70), Expect = 0.036
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 39 QNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLS 75
H E E + + D+R +H +
Sbjct: 197 TIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVL 233
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 30.6 bits (68), Expect = 0.036
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 25 CPVCKKI-YTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHV 70
CP C+ + + + H+E EM ++C HC Q + M+ HV
Sbjct: 37 CPTCQAVGRKTIEGLKKHMENCKQEM-FTCHHCGKQLRSLAGMKYHV 82
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 30.3 bits (68), Expect = 0.038
Identities = 8/69 (11%), Positives = 18/69 (26%), Gaps = 11/69 (15%)
Query: 24 QCPVCKKIYTDQQLFQNHLET----HDNEMDYSCE-----HCDMQFNCKSDMRKHVHSHL 74
C + ++ H+ + ++ C F K + H+ H
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 75 SMEERGFVC 83
E+
Sbjct: 87 G--EKSGPS 93
Score = 29.6 bits (66), Expect = 0.083
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 44 THDNEMDYSCEHCDMQFNCKSDMRKHVHS-HL-SMEERGFVCE 84
+ ++ + CD F+ ++ HV H+ E+ VC
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 29.0 bits (66), Expect = 0.046
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E + C CDM F+ S +R H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 30.1 bits (69), Expect = 0.050
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVC 83
C VC K + + H++ H Y C C +F + +HV S + +
Sbjct: 39 GCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSC----TKSYEA 94
Query: 84 EICG 87
Sbjct: 95 AKAE 98
Score = 27.4 bits (62), Expect = 0.48
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 28 CKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH--VHSHLSMEERGFVCEI 85
C K +T + H+ H Y C C +F K + H +H+ + + C I
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT----GIKPYECNI 70
Query: 86 CG 87
C
Sbjct: 71 CA 72
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.0 bits (66), Expect = 0.056
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + E Y CE C F C+ D+ H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTH 31
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 29.2 bits (66), Expect = 0.076
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 39 QNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
H+ H + + C C F+ + H+ +H
Sbjct: 38 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 28.0 bits (63), Expect = 0.23
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 39 QNHLETHDNEMDYSC--EHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICG 87
N++ Y+C E CD +F+ ++ +H+ H ++ F C IC
Sbjct: 10 LNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTG--QKPFQCRICM 56
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.078
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ + E Y C C F KS +R H H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 30.1 bits (69), Expect = 0.098
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH--VHSHLSMEERGF 81
+CP C K ++D++ H TH E Y C C F+ ++++R H H+ E+ +
Sbjct: 51 KCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHT----GEKPY 106
Query: 82 VCEICG 87
C CG
Sbjct: 107 ACPECG 112
Score = 29.3 bits (67), Expect = 0.19
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH--VHSHLSMEERGF 81
+CP C K ++ + + H TH E Y+C C F+ + +R H H+ E+ +
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT----GEKPY 134
Query: 82 VCEICG 87
C CG
Sbjct: 135 KCPECG 140
Score = 28.9 bits (66), Expect = 0.20
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVC 83
CP C K ++ H TH E Y C C F+ K D+ +H +H E+ + C
Sbjct: 23 ACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG--EKPYKC 80
Query: 84 EICG 87
CG
Sbjct: 81 PECG 84
Score = 28.9 bits (66), Expect = 0.22
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH--VHSHLSMEERGF 81
CP C K ++ + H TH E Y C C F+ + ++ H H+ E+ +
Sbjct: 107 ACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT----GEKPY 162
Query: 82 VCEICG 87
C CG
Sbjct: 163 KCPECG 168
Score = 27.8 bits (63), Expect = 0.58
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+CP C K ++ + H TH E Y C C F+ + + H
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1
Length = 88
Score = 29.1 bits (64), Expect = 0.12
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 44 THDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
Y C+HCD + +++ H++ H
Sbjct: 19 PRLQNSTYQCKHCDSKLQSTAELTSHLNIH 48
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 28.0 bits (62), Expect = 0.16
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 51 YSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEIC 86
+CE C F + +H SH E+ +
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSH--SGEKPYSSGPS 46
Score = 26.1 bits (57), Expect = 0.70
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHC 56
C +C KI+ D H +H E YS
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 27.7 bits (62), Expect = 0.16
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSM 76
+ C CD F+ + H H+ +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 29.0 bits (66), Expect = 0.18
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 28 CKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
C K++ D + HL TH + C C F S +++H H
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH 57
Score = 25.2 bits (56), Expect = 4.0
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSC--EHCDMQFNCKSDMRKHVHSH 73
C C K + + + H H E + C E C +F+ ++R HV H
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 27.8 bits (63), Expect = 0.19
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
C VC + + Q+ + H +H NE Y C C+ F + + +H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 25.1 bits (56), Expect = 1.8
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 51 YSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICG 87
+ CE C F + +++H SH + E+ + C +C
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN--EKPYPCGLCN 37
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 27.5 bits (60), Expect = 0.21
Identities = 9/25 (36%), Positives = 20/25 (80%)
Query: 25 CPVCKKIYTDQQLFQNHLETHDNEM 49
CPVC+K +++ +L ++H++T+ E+
Sbjct: 12 CPVCEKSFSEDRLIKSHIKTNHPEV 36
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 28.6 bits (65), Expect = 0.22
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH--VHSHLSMEERGF 81
C C + +T H TH +E Y+C+ C F + +R H +HS +E+ F
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS----KEKPF 74
Query: 82 VCEICG 87
C+ CG
Sbjct: 75 KCQECG 80
Score = 26.6 bits (60), Expect = 0.96
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 39 QNHLETHDNEMDYSCEHCDMQFNCKSDMRKH--VHSHLSMEERGFVCEICG 87
+ ++ C+ C F ++ H H+ +ER + C+IC
Sbjct: 6 SGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHT----DERPYTCDICH 52
Score = 26.2 bits (59), Expect = 1.4
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
C +C K + Q ++H H E + C+ C F + H
Sbjct: 47 TCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.4 bits (62), Expect = 0.25
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 25 CPVCKKIY--TDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHV 70
CP C + T L ++ + C+HC QF K+ + H
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHT 74
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.33
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ + E Y C C F KS + H SH
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.47
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E Y CE C +N K ++ H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.52
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + E Y CE C +N + ++ H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 26.3 bits (59), Expect = 0.56
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ Y C C+ F+ K + H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.3 bits (59), Expect = 0.58
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ E Y C C FN KS++ H +H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.0 bits (58), Expect = 0.65
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ + E + CE C F S H SH
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 26.0 bits (57), Expect = 0.67
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ + E + C CD F ++ + +H +H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 26.0 bits (58), Expect = 0.77
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + + + C HC F K ++ H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.0 bits (56), Expect = 0.79
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 45 HDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
E YSC C ++F K M HV SH
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.96
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E Y C C F KS + H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVH 31
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 25.4 bits (56), Expect = 1.1
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 44 THDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
E YSC C F+ + + +H H
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 25.6 bits (57), Expect = 1.1
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ E Y+C+ C F S + KH H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 25.6 bits (57), Expect = 1.1
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ + E Y C C F KS + H +H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.2
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E Y C C F +S++ H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.1 bits (56), Expect = 1.3
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ + E + C C FN KS++ H +H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.3
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E Y C C F KS + H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.3
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ + E Y C C F+ KS + H+ +H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 26.8 bits (60), Expect = 1.3
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 28 CKKIYTDQQLFQNHLETHDNEMDYSCEH--CDMQFNCKSDMRKHVHSHL-SMEERGFVCE 84
C K + + H +H ++ Y C H CD +F+ S +++H H ++ C
Sbjct: 112 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 171
Query: 85 ICG 87
G
Sbjct: 172 FVG 174
Score = 25.6 bits (57), Expect = 3.7
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 28 CKKIYTDQQLFQNHLETHDNEMDYSCEH--CDMQFNCKSDMRKHVHSH 73
C Y Q HL H E + C+ C+ F + +H +H
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67
Score = 25.6 bits (57), Expect = 3.9
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 28 CKKIYTDQQLFQNHLETHDNEMDYSCEH--CDMQFNCKSDMRKHVHSH 73
C+K +T H TH E +++C+ CD++F K++M+KH +
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.4
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + E Y C C F S +H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.4
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + Y C C F+ S + H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.4
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ E Y C C F +S + H +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.5
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + E Y C C + + D+ H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 24.8 bits (55), Expect = 1.6
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ E Y C+ C F+ K + H+ H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 25.0 bits (55), Expect = 1.6
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 40 NHLETHDNEMDYSCEH--CDMQFNCKSDMRKHVHSHLSMEERGFVCE 84
+ + E ++C C +F+ ++ +H SH +
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSG--VKPSGPS 46
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.1 bits (56), Expect = 1.6
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + E + C C F K+++ H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIH 31
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding,
transcription, transcription regulator, transcription
regulation; 3.20A {Klebsiella pneumoniae}
Length = 315
Score = 26.7 bits (59), Expect = 1.7
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 75 SMEERGFVCEICGHVVDE 92
+ R +IC D
Sbjct: 234 DLNARHVAGDICSRFYDI 251
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.7
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E Y C C F S++ H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 26.9 bits (59), Expect = 1.7
Identities = 9/84 (10%), Positives = 22/84 (26%), Gaps = 13/84 (15%)
Query: 17 YTIFVAS-----------QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSD 65
+ S + + + L + HL+ ++ S E + +
Sbjct: 132 EPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQ 191
Query: 66 MRKHVHSHLS--MEERGFVCEICG 87
+ + L+ I G
Sbjct: 192 LDNYGQQELADLFVNYNVKSPITG 215
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.7
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ E C C F KS + H +H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.7
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ + E Y+C+ C F+ + KH H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 24.8 bits (55), Expect = 1.8
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ + Y C C F+ KS + H SH
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 24.8 bits (55), Expect = 1.8
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + E + C C F+ +S + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.8
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E Y+CE C F S +++H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 25.5 bits (57), Expect = 1.8
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
C C K ++ + H H E Y C C F+ S + H
Sbjct: 16 GCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 25.1 bits (56), Expect = 2.6
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICG 87
H E Y C C F+ S + +H H E+ + C CG
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVH--TGEKPYKCLECG 49
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.8
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + E Y C C F +S++ KH
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKH 31
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.9 bits (55), Expect = 1.9
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH--VHS 72
+ E ++C+ C F S +R H VH
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.2
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ E Y C+ C F K+ + +H +H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 26.1 bits (56), Expect = 2.3
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 19 IFVASQCPVCKKIYTDQQLFQNHLET--HDNEMD-YSCEHCDMQFNCKSDMRKHVHSHLS 75
IF +QC VC + + H ++ H N++ Y + +
Sbjct: 29 IFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISD 88
Query: 76 MEERGFVCEICGHVVDEMPVATQ 98
E+R C +C VA
Sbjct: 89 GEDRSKCCPVCNMTFSSPVVAES 111
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 25.1 bits (56), Expect = 2.3
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+C C K ++ H TH E Y C+ C F +S + H
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 25.1 bits (56), Expect = 2.3
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICG 87
Y C+ C F+ SD+ KH +H E+ + C+ CG
Sbjct: 9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG--EKPYKCDECG 53
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.3
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + E + C+ C F +S + +H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.4 bits (54), Expect = 2.3
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ + Y C C F KS + H SH
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.4
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + E Y C C F S + +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 26.4 bits (57), Expect = 2.5
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 25 CPVCKKIYTDQQLFQNHLET 44
CP C + + +F++HL
Sbjct: 295 CPFCSRWFKTSSVFESHLVG 314
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.7
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E Y C+ C F S + H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 24.4 bits (54), Expect = 2.7
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + + Y C C F + + +H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRH 31
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.4 bits (54), Expect = 2.9
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + + + C C F KS + +H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 26.2 bits (57), Expect = 3.0
Identities = 11/65 (16%), Positives = 14/65 (21%), Gaps = 11/65 (16%)
Query: 27 VCKKIYTDQQLFQNH-LETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEI 85
IY + H + E SC+ C M H C
Sbjct: 505 AISNIYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCH----------RCRA 554
Query: 86 CGHVV 90
H
Sbjct: 555 SAHKE 559
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.4 bits (54), Expect = 3.0
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ + Y C C F KS + H +H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.1
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + Y C+ C F + +H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.2
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E Y C C F +S++ KH
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.2
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + E Y C C F+ S + +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.3
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVC 83
+ E Y C C F S + +H+ H E+
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH--FREKSSGP 43
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 23.9 bits (51), Expect = 3.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 51 YSCEHCDMQFNCKSDMRKHVHSH 73
Y C HC QF +++HV H
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIH 26
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 24.0 bits (53), Expect = 3.6
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E + C C F+ S + H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.6
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E Y C C F KS + H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 23.9 bits (51), Expect = 3.6
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 45 HDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ + C C F K++ +H+ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.8
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ E Y C+ C F+ + + +H H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.8
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E Y C++C F +++ +H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich,
rossmann-like fold, structural genomics, PSI-2, protein
structure initiative; HET: MSE G3H; 1.65A {Bacillus
subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A*
3bxh_A*
Length = 255
Score = 25.5 bits (56), Expect = 4.2
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 75 SMEERGFVCEICGHVVDE 92
+++ V E G+ +
Sbjct: 175 KIDDNDAVTEAFGYYFNA 192
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress,
oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A
3pza_A 3qvd_A 1nnq_A 2hr5_A
Length = 170
Score = 25.4 bits (55), Expect = 4.3
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 49 MDYSCEHCDMQFNCKSDMRKHVHSHLSMEERG-FVCEICGHVVDEMP 94
Y+ E + ++ +E + ++C ICG+ +
Sbjct: 106 THYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEA 152
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.3
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E Y C C F KS + +H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH 31
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3*
3m9s_3*
Length = 783
Score = 25.6 bits (56), Expect = 4.3
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 78 ERGFVCEICGHVVDEMPV 95
+ G G++ D PV
Sbjct: 215 DFGLPSGFSGNITDICPV 232
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.7 bits (50), Expect = 4.4
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 25 CPVCKKIYTDQQLFQNHLETHDNE 48
C C K++ + Q HL H NE
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNE 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.5
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + E + CE C +F S + H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
>3m1c_A GH, envelope glycoprotein H; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 762
Score = 25.7 bits (55), Expect = 4.7
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 61 NCKSDMRKHVHSHLSMEERGFVCEICGHVV 90
C+ R+ L E + G V
Sbjct: 658 TCEGHAREIEPKRLVRTENRRDLGLVGAVF 687
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 5.1
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ E Y C C F+ KS + H +H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 5.1
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + E Y C C F K+++ +H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 25.3 bits (55), Expect = 5.6
Identities = 8/61 (13%), Positives = 17/61 (27%)
Query: 44 THDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICGHVVDEMPVATQSSKYP 103
+ + SC+H + L + R E ++ + S +P
Sbjct: 125 KEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRTGVITSPDFP 184
Query: 104 G 104
Sbjct: 185 N 185
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 5.7
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + + C C F KS + H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 5.8
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E Y C C F+ + + H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 24.1 bits (52), Expect = 5.9
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 47 NEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICGHVVDE 92
N + C C F +D+ + F C C V+E
Sbjct: 11 NRASFKCPVCSSTF---TDL--EANQLFDPMTGTFRCTFCHTEVEE 51
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 6.4
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + + C C F S + H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 6.5
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E Y C C F S + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 6.7
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E Y C+ C +F+ S ++ H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 23.9 bits (51), Expect = 6.7
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 7/57 (12%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERG 80
+C C I+ T CE C ++ + K + + G
Sbjct: 20 KCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG 69
>2o0m_A Transcriptional regulator, SORC family; structural genomics,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.60A {Enterococcus faecalis}
SCOP: c.124.1.8
Length = 345
Score = 24.8 bits (54), Expect = 6.7
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 76 MEERGFVCEICGHVVDE 92
++++ V E G+ DE
Sbjct: 263 LKQKNAVAESFGYFFDE 279
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 6.9
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E Y C C F+ +S + H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 23.6 bits (50), Expect = 7.0
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 46 DNEMDYSCEHCDMQFNCKSDMRKHV-HSHLSMEER 79
D + Y+C+ C ++ + + H HSHL+ EE
Sbjct: 3 DRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG 37
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 7.0
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E + C C F+ + +H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 7.2
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E + CE C +F S + H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 24.3 bits (53), Expect = 7.4
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 23 SQCPVCKKIYTDQQLFQNHL 42
+QCP C T+ L N +
Sbjct: 58 TQCPTCCVTVTEPDLKNNRI 77
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 24.7 bits (54), Expect = 8.0
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 27/77 (35%)
Query: 27 VCKKIYTDQQLFQN-HLETHDNEMDYSCEHCDMQF-----------NCKSDMRKHVHSHL 74
+ ++ + + ++N HL + Y CEH M F C ++
Sbjct: 103 LSQEFFL--KAYENGHLVKKVTKQAY-CEHDKM-FLPDRFVIGTCPYCGAE--------- 149
Query: 75 SMEERGFVCEICGHVVD 91
+++G CE+CG +
Sbjct: 150 --DQKGDQCEVCGRPLT 164
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 8.3
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E + C C F+ S + H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH 31
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix,
anti-parrallel beta sheet, double straded anti-parallel
beta helix, metal binding protein; 2.00A {Mus musculus}
Length = 404
Score = 24.6 bits (53), Expect = 8.4
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 11/47 (23%)
Query: 21 VASQCPVCKK------IYTDQQLFQNHLETHDNEMDYSCEHCDMQFN 61
+ S C C + + T F+ + +SCEHC
Sbjct: 11 IESLCMNCYRNGTTRLLLTKIPFFREIIV-----SSFSCEHCGWNNT 52
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 8.9
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + E Y C C F+ + +H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.8 bits (50), Expect = 8.9
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E + C+ C F + H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.8 bits (50), Expect = 9.1
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ E Y C C F KS + H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.8 bits (50), Expect = 9.1
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 40 NHLETHDNEMDYSCEHCDMQFNCKSDMRKH 69
+ + E Y C C F S + H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 24.1 bits (52), Expect = 9.5
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 23 SQCPVCKKIYTDQQLFQNHL 42
+ CPVC Q L N
Sbjct: 56 TGCPVCYTPAWIQDLKINRQ 75
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 22.9 bits (49), Expect = 9.6
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 46 DNEMDYSCEH--CDMQFNCKSDMRKHVHSHLS 75
+ + C C F + ++R H+ +HL
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 9.6
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ Y C C F+ S + +H H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.133 0.421
Gapped
Lambda K H
0.267 0.0776 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,628,474
Number of extensions: 81391
Number of successful extensions: 678
Number of sequences better than 10.0: 1
Number of HSP's gapped: 642
Number of HSP's successfully gapped: 284
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)