RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy370
(111 letters)
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 33.2 bits (76), Expect = 4e-04
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSHLSM 76
+ C CD F+ + H H+ +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 31.9 bits (73), Expect = 0.001
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 44 THDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
TH E Y C C +F M+ H+
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQK 31
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 32.3 bits (73), Expect = 0.002
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 28 CKKIYTDQQLFQNHLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
C K +T + H+ H Y C C +F K + H+ H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 23.9 bits (51), Expect = 2.0
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 48 EMDYSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICG 87
+ Y C+ C F KS +H+ H + R + C +CG
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMH--LGLRPYGCGVCG 37
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 31.6 bits (72), Expect = 0.002
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 44 THDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
TH E Y+C HCD F K + H +
Sbjct: 2 THTGEKPYACSHCDKTFRQKQLLDMHFKRY 31
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 30.9 bits (70), Expect = 0.003
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 41 HLETHDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
Y C+ C F+ SD+ KH +H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 29.9 bits (68), Expect = 0.008
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 45 HDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
H E Y C C F+ S + +H H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 28.8 bits (65), Expect = 0.022
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 51 YSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEI 85
Y C+ C F+ + H+ + ER C++
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHT-SERPHKCQV 39
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 27.6 bits (62), Expect = 0.053
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 51 YSCEHCDMQFNCKSDMRKHVHSH 73
+ CE C F + +++H SH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 27.3 bits (61), Expect = 0.056
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 51 YSCEHCDMQFNCKSDMRKHVHSH 73
++C C +F + KH+ +H
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTH 25
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 26.8 bits (60), Expect = 0.089
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 51 YSCEHCDMQFNCKSDMRKHVHSH 73
+ C C F+ + H+ +H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH 26
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 26.6 bits (59), Expect = 0.13
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 45 HDNEMDYSCEHCDMQFNCKSDMRKHVHSH 73
+ + C C F K++ +H+ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 27.3 bits (60), Expect = 0.14
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 51 YSCEHCDMQFNCKSDMRKHVHSH 73
Y C+HCD + +++ H++ H
Sbjct: 19 YQCKHCDSKLQSTAELTSHLNIH 41
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 394
Score = 27.3 bits (60), Expect = 0.37
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 24 QCPVCKKIYTDQQLFQNHLETHDNEMDYS--CEHCDMQFNCKSDMRKHVHSHLSMEERGF 81
+ KK Y L + E + + E ++ ++ M+ + +M G
Sbjct: 89 DNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGV 148
Query: 82 VCEICGHVVD 91
+ G D
Sbjct: 149 LDPASGEPGD 158
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.1 bits (55), Expect = 0.44
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 51 YSCEH--CDMQFNCKSDMRKHVHSHLSMEERGFVCE 84
+SC C FN K +++H+ H + R ++CE
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLH--SDTRDYICE 35
Score = 22.8 bits (49), Expect = 3.6
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 25 CPVCKKIYTDQQLFQNHLETHDNEMDYSCE 54
P C K + ++ + H++ H + DY CE
Sbjct: 6 EPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 24.9 bits (54), Expect = 0.57
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 51 YSCEHCDMQFNCKSDMRKHVHS 72
Y C +C+ F K ++ KH+ S
Sbjct: 2 YHCTYCNFSFKTKGNLTKHMKS 23
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 26.1 bits (56), Expect = 1.1
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 71 HSHLSMEERGFVCEICGHV-------VDEMPVATQSSKYPGQQNQLF 110
H LS E+ ++C V+ +PV + S+ PG ++
Sbjct: 8 HQPLSREKNSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDSAEMM 54
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 23.8 bits (51), Expect = 1.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 48 EMDYSCEHCDMQFNCKSDMRKHVHSH 73
E YSC C ++F K M HV SH
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSH 26
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.8 bits (51), Expect = 1.5
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 52 SCEH--CDMQFNCKSDMRKHVHSH 73
+C H C F S MRKH+H+H
Sbjct: 3 ACPHKGCTKMFRDNSAMRKHLHTH 26
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 23.3 bits (51), Expect = 2.0
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 51 YSCEHCDMQFNCKSDMRKHVHSH 73
Y C C F+ S + H H
Sbjct: 3 YKCLECGKAFSQNSGLINHQRIH 25
>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3,
Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}
Length = 151
Score = 24.7 bits (53), Expect = 2.3
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 66 MRKHVHSHLSMEERGFVCEICGHVVDEMPVATQSSK 101
+ + VH+ + + G G++ D PV
Sbjct: 108 IERGVHTFIGTMDFGLPSGFSGNITDICPVGALLDL 143
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 23.5 bits (51), Expect = 3.2
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 25 CPVCKKIYTDQQLFQNHLET 44
C C + + D + H +
Sbjct: 18 CLACARYFIDSTNLKTHFRS 37
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.7 bits (48), Expect = 3.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 51 YSCEHCDMQFNCKSDMRKHV 70
+ C HCD KSD+ H+
Sbjct: 3 FHCPHCDTVIARKSDLGVHL 22
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 23.0 bits (49), Expect = 3.9
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 25 CPVCKKIYTDQQLFQNHLETH 45
C +C K++TD + H H
Sbjct: 9 CGLCGKVFTDANRLRQHEAQH 29
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 22.5 bits (48), Expect = 4.2
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 48 EMDYSCEHCDMQFNCKSDMRKHVHSHL 74
E ++C+ C +F + ++H HL
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIHL 27
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 22.5 bits (48), Expect = 4.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 51 YSCEHCDMQFNCKSDMRKHVHSH 73
Y CE C ++ S ++KH+ +H
Sbjct: 2 YICEECGIRAKKPSMLKKHIRTH 24
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 36
Score = 22.3 bits (48), Expect = 4.7
Identities = 5/19 (26%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 77 EERGFVCEICGHVV-DEMP 94
+++ +C ICG++ E
Sbjct: 2 DDKFHLCPICGYIHKGEDF 20
>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 22.3 bits (47), Expect = 4.7
Identities = 8/22 (36%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Query: 50 DYSCEH--CDMQFNCKSDMRKH 69
+++C+ CD++F K++M+KH
Sbjct: 2 NFTCDSDGCDLRFTTKANMKKH 23
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 22.8 bits (49), Expect = 5.5
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 51 YSCEHCDMQFNCKSDMRKHVHSHLSMEERGFVCEICGHVVDE 92
+ C C F +D+ + F C C V+E
Sbjct: 15 FKCPVCSSTF---TDL--EANQLFDPMTGTFRCTFCHTEVEE 51
Score = 22.4 bits (48), Expect = 6.8
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 9/37 (24%)
Query: 24 QCPVCKKIYTD---QQLFQNHLETHDNEMDYSCEHCD 57
+CPVC +TD QLF + C C
Sbjct: 16 KCPVCSSTFTDLEANQLFD------PMTGTFRCTFCH 46
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 23.6 bits (51), Expect = 6.4
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 43 ETHDNEMDYSCEHCDMQFNCKSDMRKHVH 71
+ + CE+C + R H+
Sbjct: 24 DYGKQPKLWLCEYCLKYMKYEKSYRFHLG 52
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 21.9 bits (47), Expect = 7.2
Identities = 5/25 (20%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 51 YSCEH--CDMQFNCKSDMRKHVHSH 73
+ C C +F ++++H +H
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTH 27
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId:
55529]}
Length = 70
Score = 22.4 bits (48), Expect = 8.3
Identities = 4/12 (33%), Positives = 8/12 (66%)
Query: 81 FVCEICGHVVDE 92
+ CE CG++ +
Sbjct: 8 YECEACGYIYEP 19
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 21.5 bits (46), Expect = 9.5
Identities = 6/25 (24%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 51 YSCEH--CDMQFNCKSDMRKHVHSH 73
Y C C+ +F ++++ H+ +H
Sbjct: 3 YVCPFDGCNKKFAQSTNLKSHILTH 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.133 0.421
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 413,480
Number of extensions: 17991
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 102
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (21.9 bits)