BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3701
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 309 bits (791), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 149/280 (53%), Positives = 196/280 (70%), Gaps = 28/280 (10%)
Query: 62 DLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGH 120
+LF L+H+LVDLYP + ++W+AVGCYY +G +++ ARR+L KAT+L+K + PAW+ YGH
Sbjct: 74 ELFYLSHKLVDLYPSNPVSWFAVGCYYLXVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 133
Query: 121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
SFAVE+EHDQA AAYF A L KGCHLP LY+GLE GLTNN++LA +FF ALSIA EDP
Sbjct: 134 SFAVESEHDQAXAAYFTAAQLXKGCHLPXLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193
Query: 181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240
FV HE+GV+A+QN + AE F++AL K+K +G E+ DKWEPLLN
Sbjct: 194 FVXHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN------------- 240
Query: 241 GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDL 300
NLGHV RKLKKY EAL++H+QALV+ P AST+ IGYI +L G+
Sbjct: 241 --------------NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNF 286
Query: 301 DSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPG 340
++AV+YFH + L+RDD+F+ T L + IE I +S + G
Sbjct: 287 ENAVDYFHTALGLRRDDTFSVTXLGHCIEXYIGDSEAYIG 326
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 140/268 (52%), Gaps = 29/268 (10%)
Query: 63 LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF 122
L+ ++++LVD +P+ A+ W AVG YY + + ARR+ K++++D F PAW+ + HSF
Sbjct: 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSF 417
Query: 123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV 182
A+E EHDQA++AY A LF+G HLP L++G++ N LA+++ + ++ DP +
Sbjct: 418 AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477
Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG 242
++E+GV+A+ + A N F AL VK K + K
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVK--------------------KTQSNEK---- 513
Query: 243 EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS 302
W NLGH RKLK Y+ A++ Q L+++ A+ I +
Sbjct: 514 -----PWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568
Query: 303 AVNYFHKTMALKRDDSFATTMLSYVIEQ 330
A+ + H+++A+ ++ A+ +L +E+
Sbjct: 569 AITHLHESLAISPNEIMASDLLKRALEE 596
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 29 EMKSALLLLKGRVYEALENRALAADCYKGALLAD 62
++++++ L+G+VY L N A +CYK AL+ D
Sbjct: 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
NLG+ K Y+EA+E++++AL + P A + +G GD D A+ Y+ K + L
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107
Query: 315 RDDSFATTMLS 325
+++ A L
Sbjct: 108 PNNAEAKQNLG 118
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
NLG+ K Y+EA+E++++AL + P A + +G GD D A+ Y+ K + L
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 315 RDDSFATTMLS 325
+++ A L
Sbjct: 74 PNNAEAWYNLG 84
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 55 YKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA 114
YK + + + ++L P++A AWY +G YY G D A + KA LD A
Sbjct: 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Query: 115 WLMYGHSFAVENEHDQAMAAYFNAFNL 141
W G+++ + ++D+A+ Y A L
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
+SA AWY +G YY G D A + KA LD AW G+++ + ++D+A+ Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 136 FNAFNL 141
A L
Sbjct: 67 QKALEL 72
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 55 YKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLD 108
YK + + + ++L P++A AWY +G YY G D A + KA LD
Sbjct: 54 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
NLG+ K Y+EA+E++++AL + P A + +G GD D A+ Y+ K + L
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 315 RDDSFATTMLS 325
+++ A L
Sbjct: 74 PNNAEAKQNLG 84
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
+SA AWY +G YY G D A + KA LD AW G+++ + ++D+A+ Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 136 FNAFNL 141
A L
Sbjct: 67 QKALEL 72
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 55 YKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLD 108
YK + + + ++L P++A AWY +G YY G D A + KA LD
Sbjct: 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
NLG+ K Y+EA+E++++AL + P A + +G GD D A+ Y+ K + L
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELY 107
Query: 315 RDDSFATTMLS 325
+++ A L
Sbjct: 108 PNNAEAKQNLG 118
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%)
Query: 55 YKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA 114
YK + + + ++LYP++A AWY +G YY G D A + KA L A
Sbjct: 20 YKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 79
Query: 115 WLMYGHSFAVENEHDQAMAAYFNAFNLF 142
W G+++ + ++D+A+ Y A L+
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALELY 107
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
NLG+ K Y+EA+E++++AL + P A + +G GD D A+ Y+ K + L
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELY 73
Query: 315 RDDSFATTMLS 325
+++ A L
Sbjct: 74 PNNAEAWYNLG 84
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
+SA AWY +G YY G D A + KA L AW G+++ + ++D+A+ Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 136 FNAFNLF 142
A L+
Sbjct: 67 QKALELY 73
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
NLG+ K Y+EA+E++++AL + P A + +G GD D A+ Y+ K + L
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
NLG+ K Y+EA+E++++AL + P A + +G GD D A+ Y+ K + L
Sbjct: 40 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
NLG+ K Y+EA+E++++AL + P A + +G GD D A+ Y+ K + L
Sbjct: 74 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Query: 29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYY 88
E L L R EA N L YK + + + ++L P SA AWY +G Y
Sbjct: 22 EYYQKALELDPRSAEAWYN--LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79
Query: 89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141
Y G D A + KA LD AW G+++ + ++D+A+ Y A L
Sbjct: 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 55 YKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA 114
YK + + + ++L P SA AWY +G YY G D A + KA LD A
Sbjct: 12 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
Query: 115 WLMYGHSFAVENEHDQAMAAYFNAFNL 141
W G+++ + ++D+A+ Y A L
Sbjct: 72 WYNLGNAYYKQGDYDEAIEYYQKALEL 98
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%)
Query: 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFN 137
A AWY +G YY G D A + KA LD AW G+++ + ++D+A+ Y
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 138 AFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT 197
A L +G + A +++ AL + + +G Y+ +Y
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 198 VAENCFMEALS 208
A + +AL
Sbjct: 121 EAIEYYQKALE 131
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYY 88
E L L R EA N L YK + + + ++L P SA AWY +G Y
Sbjct: 56 EYYQKALELDPRSAEAWYN--LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 89 YLIGRSDPARRFLGKATSLD 108
Y G D A + KA LD
Sbjct: 114 YKQGDYDEAIEYYQKALELD 133
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 32/236 (13%)
Query: 71 VDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQ 130
++ P+ A+AW +GC + G A KA +LD FL A++ G+ D+
Sbjct: 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR 221
Query: 131 AMAAYFNAFNLFKG---CHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG 187
A+AAY A +L H V E GL + LA + A+ + P +
Sbjct: 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLID---LAIDTYRRAIELQPHFPDAYCNLA 278
Query: 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI--- 244
+ + AE+C+ AL + LNNL + +K+ G I
Sbjct: 279 NALKEKGSVAEAEDCYNTALR---------LCPTHADSLNNLAN-----IKREQGNIEEA 324
Query: 245 ---------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIG 291
+ ++ +NL V ++ K +EAL +K+A+ ++P A + +G
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 245 IADKWEPLL----NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDL 300
+A K PLL +NLG+V ++ + +EA+E ++ AL + P + + GD+
Sbjct: 58 LAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117
Query: 301 DSAVNYF 307
+ AV +
Sbjct: 118 EGAVQAY 124
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
NLG+ K Y+EA+E++++AL + P A + +G GD D A+ Y+ K + L
Sbjct: 8 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 66
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYF 136
SA AWY +G YY G D A + KA LD AW G+++ + ++D+A+ Y
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 137 NAFNL 141
A L
Sbjct: 62 KALEL 66
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 55 YKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLD 108
YK + + + ++L P SA AWY +G YY G D A + KA LD
Sbjct: 14 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
NLG+ K Y++A+E++++AL + P AS + +G GD A+ Y+ K + L
Sbjct: 14 NLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELD 73
Query: 315 RDDSFA 320
+++ A
Sbjct: 74 PNNAKA 79
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
G EA +N L YK + + ++L P++A AWY +G YY G A
Sbjct: 6 GNSAEAWKN--LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAI 63
Query: 99 RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141
+ KA LD AW G+++ + ++ +A+ Y A L
Sbjct: 64 EYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALEL 106
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
NLG+ K Y++A+E++++AL + P A + G GD A+ + K + L
Sbjct: 48 NLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELD 107
Query: 315 RDDSFATTMLS 325
+++ A L
Sbjct: 108 PNNAKAKQNLG 118
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%)
Query: 60 LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYG 119
LAD H VD PD+ IA+Y + +G+S A L K L F A L G
Sbjct: 42 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101
Query: 120 HSFAVENEHDQA 131
H + + D+A
Sbjct: 102 HLLLKQGKLDEA 113
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%)
Query: 60 LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYG 119
LAD H VD PD+ IA+Y + G+S A L K +L F A L G
Sbjct: 19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXDFTAARLQRG 78
Query: 120 HSFAVENEHDQA 131
H + + D+A
Sbjct: 79 HLLLKQGKLDEA 90
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 31/72 (43%)
Query: 60 LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYG 119
LAD H VD PD+ IA+Y + G+S A L K L F A L G
Sbjct: 42 LADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQRG 101
Query: 120 HSFAVENEHDQA 131
H + + D+A
Sbjct: 102 HLLLKQGKLDEA 113
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 62 DLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHS 121
D + + V L SA A+Y +G ++I A L +A +L+ ++ A+ G
Sbjct: 57 DAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLV 116
Query: 122 FAVENEHDQAMAAYFNAFNLFKG 144
+ EHD+A+ AY ++ G
Sbjct: 117 YDSMGEHDKAIEAYEKTISIKPG 139
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b
Length = 751
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 48 RALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYY 89
+ LA DC DLF L+ + DL + ++ Y+ GC YY
Sbjct: 332 KKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYY 373
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
LNNL ++ R+ EEA+ +++AL V P A+ + + G L A+ H A
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL--MHYKEA 69
Query: 313 LKRDDSFA 320
++ +FA
Sbjct: 70 IRISPTFA 77
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
+NL V ++ K +EAL +K+A+ ++P A + +G D+ A+ + T A+
Sbjct: 47 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY--TRAI 104
Query: 314 KRDDSFA 320
+ + +FA
Sbjct: 105 QINPAFA 111
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
L N G+ K + EA+++++ A+ + P + + I TGDL+ + + K +
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87
Query: 313 LKRDDSFA 320
+K D S A
Sbjct: 88 IKPDHSKA 95
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
L N G+ K + EA+++++ A+ + P + + I TGDL+ + + K +
Sbjct: 24 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 83
Query: 313 LKRDDSFA 320
+K D S A
Sbjct: 84 IKPDHSKA 91
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 748
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 48 RALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYY 89
+ LA DC + DLF L+ + DL I+ Y+ G YY
Sbjct: 329 KKLALDCSGQQVAVDLFLLSGQYSDLASLGCISRYSAGSVYY 370
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 753
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 48 RALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYY 89
+ LA DC + DLF L+ + DL I+ Y+ G YY
Sbjct: 334 KKLALDCSGQQVAVDLFLLSGQYSDLASLGCISRYSAGSVYY 375
>pdb|4B4T|R Chain R, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 429
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 78 AIAWYAVGCYYYLIGRSDPARRFLGKATS 106
A AW +G YY IG D A + LGK+ S
Sbjct: 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLS 159
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 252 LLNNLGHVNRKLKKYEEA----LEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYF 307
+LNN G + K+YEEA LE + L P ++ F +G + A YF
Sbjct: 107 VLNNYGGFLYEQKRYEEAYQRLLEASQDTLY--PERSRVFENLGLVSLQXKKPAQAKEYF 164
Query: 308 HKTMALKRD 316
K++ L R+
Sbjct: 165 EKSLRLNRN 173
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 233 AEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 285
AED+ KQL E+++ L L +L KY EAL+ ++ L +A KA+
Sbjct: 32 AEDRSKQLEDELVS-----LQKKLKATEDELDKYSEALKDAQEKLELAEKKAT 79
>pdb|3U4T|A Chain A, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b.
pdb|3U4T|B Chain B, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b
Length = 272
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEAL 207
N LA ++ + + DP V +E+G Y N Y A++ F++ L
Sbjct: 123 NFPLAIQYXEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 252 LLNNLGHVNRKLKKYEEA----LEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYF 307
+LNN G + K+YEEA LE + L P ++ F +G + A YF
Sbjct: 120 VLNNYGGFLYEQKRYEEAYQRLLEASQDTLY--PERSRVFENLGLVSLQMKKPAQAKEYF 177
Query: 308 HKTMALKRD 316
K++ L R+
Sbjct: 178 EKSLRLNRN 186
>pdb|2W49|A Chain A, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|T Chain T, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|U Chain U, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|V Chain V, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|W Chain W, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|X Chain X, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|A Chain A, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|T Chain T, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|U Chain U, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|V Chain V, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|W Chain W, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|X Chain X, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 277
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 233 AEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS-----TF 287
AED+ KQL E+++ L L +L KY EAL+ ++ L +A KA+
Sbjct: 25 AEDRSKQLEDELVS-----LQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVA 79
Query: 288 CCIGYIQALTGDLDSAVNYF 307
IQ + +LD A
Sbjct: 80 SLNRRIQLVEEELDRAQERL 99
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAP------MKASTFCCIGYIQALTGDLDSAVNYFH 308
NLG+ + L + +A+ H+Q L++A + + +G G+ ++A Y+
Sbjct: 192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251
Query: 309 KTMALKR 315
KT+ L R
Sbjct: 252 KTLLLAR 258
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAP------MKASTFCCIGYIQALTGDLDSAVNYFH 308
NLG+ + L + +A+ H+Q L++A + + +G G+ ++A Y+
Sbjct: 190 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 249
Query: 309 KTMALKR 315
KT+ L R
Sbjct: 250 KTLLLAR 256
>pdb|2TMA|A Chain A, Tropomyosin Crystal Structure And Muscle Regulation.
Appendix. Construction Of An Atomic Model For
Tropomyosin And Implications For Interactions With Actin
pdb|2TMA|B Chain B, Tropomyosin Crystal Structure And Muscle Regulation.
Appendix. Construction Of An Atomic Model For
Tropomyosin And Implications For Interactions With Actin
Length = 284
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 233 AEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS-----TF 287
AED+ KQL E+++ L L +L KY EAL+ ++ L +A KA+
Sbjct: 32 AEDRSKQLEDELVS-----LQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVA 86
Query: 288 CCIGYIQALTGDLDSAVNYF 307
IQ + +LD A
Sbjct: 87 SLNRRIQLVEEELDRAQERL 106
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAP------MKASTFCCIGYIQALTGDLDSAVNYFH 308
NLG+ + L + +A+ H+Q L++A + + +G G+ ++A Y+
Sbjct: 188 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247
Query: 309 KTMALKR 315
KT+ L R
Sbjct: 248 KTLLLAR 254
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 7/141 (4%)
Query: 57 GALLAD-LFKLAHEL----VDLYPDS--AIAWYAVGCYYYLIGRSDPARRFLGKATSLDK 109
G+LL+D LF EL V L P S +G + L G D A A S+
Sbjct: 140 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 199
Query: 110 LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFF 169
W G + A N+ ++A+AAY A L G +G+ C R A + F
Sbjct: 200 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 259
Query: 170 DLALSIAHEDPFVIHEMGVIA 190
AL++ + E G ++
Sbjct: 260 LEALNMQRKSRGPRGEGGAMS 280
>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX
Length = 164
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPM---KAS---TFCCIGYIQALTGDLDSAVNYFH 308
NLG+ + L + +A+ H+Q L++A KA+ + +G G+ ++A Y+
Sbjct: 14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYK 73
Query: 309 KTMALKR 315
KT+ L R
Sbjct: 74 KTLLLAR 80
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 27/69 (39%)
Query: 262 KLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFAT 321
KLK+Y+EA+ L G +A G +DSA + F K DD
Sbjct: 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301
Query: 322 TMLSYVIEQ 330
L + EQ
Sbjct: 302 RELRALAEQ 310
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 7/141 (4%)
Query: 57 GALLAD-LFKLAHEL----VDLYPDS--AIAWYAVGCYYYLIGRSDPARRFLGKATSLDK 109
G+LL+D LF EL V L P S +G + L G D A A S+
Sbjct: 149 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 208
Query: 110 LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFF 169
W G + A N+ ++A+AAY A L G +G+ C R A + F
Sbjct: 209 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 268
Query: 170 DLALSIAHEDPFVIHEMGVIA 190
AL++ + E G ++
Sbjct: 269 LEALNMQRKSRGPRGEGGAMS 289
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 7/141 (4%)
Query: 57 GALLAD-LFKLAHEL----VDLYPDS--AIAWYAVGCYYYLIGRSDPARRFLGKATSLDK 109
G+LL+D LF EL V L P S +G + L G D A A S+
Sbjct: 149 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 208
Query: 110 LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFF 169
W G + A N+ ++A+AAY A L G +G+ C R A + F
Sbjct: 209 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 268
Query: 170 DLALSIAHEDPFVIHEMGVIA 190
AL++ + E G ++
Sbjct: 269 LEALNMQRKSRGPRGEGGAMS 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,016,633
Number of Sequences: 62578
Number of extensions: 387520
Number of successful extensions: 1017
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 938
Number of HSP's gapped (non-prelim): 87
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)