Query psy3701
Match_columns 342
No_of_seqs 805 out of 1720
Neff 11.7
Searched_HMMs 46136
Date Fri Aug 16 23:22:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626|consensus 100.0 8.6E-37 1.9E-41 253.0 26.8 290 35-333 187-505 (966)
2 KOG4626|consensus 100.0 2.9E-37 6.3E-42 255.8 22.8 262 61-331 201-469 (966)
3 KOG1126|consensus 100.0 2.2E-32 4.7E-37 228.9 23.5 251 33-319 354-626 (638)
4 KOG1173|consensus 100.0 4.7E-30 1E-34 211.0 29.1 270 33-331 245-536 (611)
5 TIGR00990 3a0801s09 mitochondr 100.0 2.6E-29 5.5E-34 226.3 32.3 283 32-330 127-479 (615)
6 TIGR00990 3a0801s09 mitochondr 100.0 4.4E-29 9.6E-34 224.8 31.7 247 31-319 330-577 (615)
7 KOG1126|consensus 100.0 6E-30 1.3E-34 214.4 24.0 255 32-334 317-607 (638)
8 PRK15174 Vi polysaccharide exp 100.0 7.8E-28 1.7E-32 216.3 31.7 308 7-329 11-329 (656)
9 PRK15174 Vi polysaccharide exp 100.0 9.4E-28 2E-32 215.7 32.0 285 31-330 75-364 (656)
10 KOG1155|consensus 100.0 8.7E-27 1.9E-31 187.6 27.5 260 37-332 267-555 (559)
11 PRK11447 cellulose synthase su 100.0 1.8E-26 3.8E-31 220.7 33.1 267 61-330 320-683 (1157)
12 TIGR02917 PEP_TPR_lipo putativ 100.0 4.2E-26 9.1E-31 216.1 35.4 295 33-331 534-884 (899)
13 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-26 6.8E-31 217.0 33.9 276 32-312 601-899 (899)
14 PRK11447 cellulose synthase su 100.0 5.8E-26 1.3E-30 217.2 31.2 280 37-331 274-650 (1157)
15 PRK11788 tetratricopeptide rep 100.0 3E-25 6.4E-30 190.5 32.3 281 32-328 35-326 (389)
16 PRK09782 bacteriophage N4 rece 100.0 1.3E-25 2.8E-30 206.6 31.2 248 31-330 476-723 (987)
17 PRK09782 bacteriophage N4 rece 99.9 3.4E-25 7.4E-30 203.9 29.2 256 34-340 511-766 (987)
18 KOG0547|consensus 99.9 2.6E-25 5.6E-30 180.3 23.6 246 32-319 326-572 (606)
19 PRK11788 tetratricopeptide rep 99.9 1.9E-24 4.2E-29 185.5 29.9 249 77-330 34-294 (389)
20 KOG1155|consensus 99.9 3.7E-24 8.1E-29 172.5 29.2 268 29-332 161-480 (559)
21 KOG0547|consensus 99.9 6.7E-25 1.5E-29 177.9 24.7 269 31-316 114-494 (606)
22 PRK12370 invasion protein regu 99.9 1.4E-24 3E-29 192.3 27.9 213 62-312 279-501 (553)
23 PF13429 TPR_15: Tetratricopep 99.9 6.9E-26 1.5E-30 184.8 14.1 251 36-335 12-265 (280)
24 PRK11189 lipoprotein NlpI; Pro 99.9 7.8E-24 1.7E-28 172.9 26.0 233 45-329 39-282 (296)
25 KOG1129|consensus 99.9 2.1E-24 4.5E-29 166.9 19.2 246 35-326 226-471 (478)
26 KOG0624|consensus 99.9 4.2E-23 9.2E-28 160.7 25.8 311 3-328 2-385 (504)
27 KOG1125|consensus 99.9 3E-24 6.6E-29 177.7 20.3 246 38-331 291-555 (579)
28 PRK10049 pgaA outer membrane p 99.9 1.6E-22 3.4E-27 185.8 33.3 300 29-330 46-439 (765)
29 KOG2002|consensus 99.9 1.3E-22 2.7E-27 177.2 30.2 311 25-335 300-767 (1018)
30 PRK12370 invasion protein regu 99.9 2.9E-23 6.3E-28 184.0 26.4 222 74-331 252-488 (553)
31 TIGR02521 type_IV_pilW type IV 99.9 1.2E-22 2.5E-27 162.0 25.5 204 76-315 29-234 (234)
32 COG3063 PilF Tfp pilus assembl 99.9 4.8E-22 1.1E-26 146.7 23.9 209 78-322 35-245 (250)
33 PF13429 TPR_15: Tetratricopep 99.9 6.5E-24 1.4E-28 173.2 14.3 235 29-313 41-277 (280)
34 KOG2076|consensus 99.9 2.3E-21 5.1E-26 168.2 30.0 289 33-333 140-498 (895)
35 KOG2002|consensus 99.9 5.4E-22 1.2E-26 173.3 26.1 238 61-331 147-389 (1018)
36 PRK11189 lipoprotein NlpI; Pro 99.9 1E-21 2.3E-26 160.4 26.3 226 28-299 60-286 (296)
37 KOG1173|consensus 99.9 7.1E-22 1.5E-26 163.2 24.3 249 49-333 249-504 (611)
38 TIGR02521 type_IV_pilW type IV 99.9 2.5E-21 5.3E-26 154.3 26.0 204 30-281 29-234 (234)
39 KOG2003|consensus 99.9 1.4E-21 3E-26 158.0 24.0 276 34-330 421-706 (840)
40 PLN02789 farnesyltranstransfer 99.9 8.4E-21 1.8E-25 154.5 26.7 233 42-322 47-311 (320)
41 KOG0548|consensus 99.9 1E-20 2.2E-25 155.8 26.7 145 186-331 304-473 (539)
42 COG3063 PilF Tfp pilus assembl 99.9 1.5E-20 3.2E-25 139.0 24.7 210 29-286 32-243 (250)
43 PRK10049 pgaA outer membrane p 99.9 1.4E-20 2.9E-25 173.1 30.1 199 89-323 248-466 (765)
44 PLN02789 farnesyltranstransfer 99.9 5.7E-21 1.2E-25 155.5 23.3 217 79-331 38-268 (320)
45 TIGR00540 hemY_coli hemY prote 99.9 1.2E-19 2.7E-24 155.4 29.6 265 34-312 86-398 (409)
46 PRK14574 hmsH outer membrane p 99.9 4.4E-19 9.5E-24 160.8 34.0 300 31-332 33-498 (822)
47 KOG1174|consensus 99.9 4.3E-19 9.3E-24 141.7 28.2 249 72-330 226-517 (564)
48 PRK10747 putative protoheme IX 99.9 2.8E-19 6.1E-24 152.4 29.1 262 32-313 84-390 (398)
49 KOG1129|consensus 99.9 3.7E-21 8E-26 149.1 15.8 212 82-330 227-441 (478)
50 KOG0550|consensus 99.9 1.4E-20 3E-25 150.1 18.6 255 31-330 48-366 (486)
51 KOG1840|consensus 99.9 1.4E-19 2.9E-24 153.8 24.0 248 32-312 199-478 (508)
52 KOG0495|consensus 99.9 9.8E-19 2.1E-23 147.2 28.5 285 38-329 590-896 (913)
53 KOG1125|consensus 99.9 1.8E-20 3.8E-25 155.6 16.4 216 82-331 289-511 (579)
54 KOG2076|consensus 99.9 5.2E-19 1.1E-23 153.8 26.0 276 27-314 168-513 (895)
55 COG2956 Predicted N-acetylgluc 99.9 2.9E-18 6.4E-23 132.8 26.7 234 36-318 39-283 (389)
56 KOG0548|consensus 99.9 1.3E-18 2.7E-23 143.6 25.4 282 37-331 7-439 (539)
57 TIGR00540 hemY_coli hemY prote 99.9 1.2E-18 2.7E-23 149.2 26.5 209 34-279 120-399 (409)
58 KOG0495|consensus 99.9 1.2E-17 2.6E-22 140.7 31.4 295 31-332 515-865 (913)
59 PRK10747 putative protoheme IX 99.8 3E-18 6.6E-23 146.1 27.0 204 37-280 123-391 (398)
60 KOG0624|consensus 99.8 8.2E-19 1.8E-23 137.1 21.2 215 72-322 32-261 (504)
61 COG2956 Predicted N-acetylgluc 99.8 1.6E-17 3.5E-22 128.8 26.2 249 30-327 67-325 (389)
62 KOG4162|consensus 99.8 1.4E-17 2.9E-22 142.9 28.3 257 77-333 432-769 (799)
63 KOG1840|consensus 99.8 2.3E-18 5E-23 146.4 22.1 233 73-333 194-465 (508)
64 TIGR03302 OM_YfiO outer membra 99.8 5.6E-18 1.2E-22 134.9 22.7 190 74-316 29-235 (235)
65 KOG2003|consensus 99.8 2.7E-18 5.9E-23 139.1 20.7 246 78-332 419-674 (840)
66 KOG1156|consensus 99.8 5.3E-18 1.2E-22 142.7 22.8 255 46-328 9-263 (700)
67 KOG1174|consensus 99.8 6.4E-17 1.4E-21 129.5 25.3 254 71-328 188-481 (564)
68 PRK15359 type III secretion sy 99.8 4.3E-18 9.3E-23 123.4 15.4 127 166-331 13-139 (144)
69 PRK14574 hmsH outer membrane p 99.8 5E-16 1.1E-20 141.2 30.8 272 43-315 33-358 (822)
70 PRK15359 type III secretion sy 99.8 9.8E-18 2.1E-22 121.5 15.6 125 66-193 15-139 (144)
71 TIGR03302 OM_YfiO outer membra 99.8 2.2E-17 4.8E-22 131.4 19.2 173 27-211 28-234 (235)
72 KOG4162|consensus 99.8 1.8E-16 4E-21 136.1 24.2 223 49-319 461-789 (799)
73 cd05804 StaR_like StaR_like; a 99.8 8.4E-17 1.8E-21 136.5 21.7 205 74-315 2-217 (355)
74 PLN03081 pentatricopeptide (PP 99.8 1.4E-15 3.1E-20 139.6 30.3 275 33-313 260-557 (697)
75 cd05804 StaR_like StaR_like; a 99.8 1.1E-15 2.3E-20 129.8 27.3 270 32-314 43-337 (355)
76 PLN03218 maturation of RBCL 1; 99.8 6.9E-15 1.5E-19 137.4 34.1 297 16-317 456-789 (1060)
77 PRK10370 formate-dependent nit 99.8 2.1E-16 4.6E-21 120.7 19.4 130 159-324 52-184 (198)
78 PLN03218 maturation of RBCL 1; 99.8 1.1E-14 2.4E-19 136.0 34.0 285 30-318 435-755 (1060)
79 KOG0550|consensus 99.7 4.8E-17 1E-21 130.1 14.4 231 78-332 49-335 (486)
80 KOG1127|consensus 99.7 1.6E-16 3.5E-21 139.7 18.8 301 32-333 492-899 (1238)
81 KOG1156|consensus 99.7 9.6E-15 2.1E-19 123.4 27.6 272 33-321 42-442 (700)
82 KOG1130|consensus 99.7 1.8E-16 4E-21 127.0 16.5 282 15-332 35-369 (639)
83 KOG3060|consensus 99.7 1.1E-14 2.5E-19 109.5 23.2 190 74-299 48-240 (289)
84 KOG1127|consensus 99.7 3E-15 6.6E-20 131.9 23.2 236 61-332 475-727 (1238)
85 PRK10370 formate-dependent nit 99.7 2E-15 4.2E-20 115.4 19.5 123 91-213 52-177 (198)
86 PLN03081 pentatricopeptide (PP 99.7 1.8E-14 3.9E-19 132.4 29.3 291 31-332 188-542 (697)
87 KOG1128|consensus 99.7 2E-15 4.2E-20 129.2 20.8 220 33-315 399-618 (777)
88 KOG3060|consensus 99.7 2.5E-14 5.4E-19 107.7 24.2 190 107-332 47-239 (289)
89 COG5010 TadD Flp pilus assembl 99.7 3.3E-15 7.1E-20 113.3 19.4 142 71-213 60-201 (257)
90 PRK14720 transcript cleavage f 99.7 4E-15 8.7E-20 134.0 23.3 220 32-296 31-269 (906)
91 COG5010 TadD Flp pilus assembl 99.7 7.9E-15 1.7E-19 111.3 20.6 151 55-205 77-227 (257)
92 PRK14720 transcript cleavage f 99.7 2.5E-15 5.4E-20 135.3 21.0 212 71-335 24-274 (906)
93 PF12569 NARP1: NMDA receptor- 99.7 4.4E-14 9.5E-19 122.0 27.5 236 31-314 3-335 (517)
94 TIGR02552 LcrH_SycD type III s 99.7 2.1E-15 4.5E-20 109.2 16.0 125 167-327 4-128 (135)
95 PRK15179 Vi polysaccharide bio 99.7 2.4E-15 5.2E-20 134.4 19.0 147 67-213 75-221 (694)
96 PLN03077 Protein ECB2; Provisi 99.7 5.7E-14 1.2E-18 132.1 28.9 294 15-332 372-705 (857)
97 PRK15179 Vi polysaccharide bio 99.7 6.6E-15 1.4E-19 131.6 19.7 148 103-286 77-224 (694)
98 COG4783 Putative Zn-dependent 99.7 5E-14 1.1E-18 115.8 22.6 154 74-280 302-455 (484)
99 PF04733 Coatomer_E: Coatomer 99.7 1.2E-14 2.7E-19 117.2 18.6 241 27-323 30-275 (290)
100 KOG0553|consensus 99.7 2.4E-15 5.1E-20 116.3 13.7 117 183-335 84-200 (304)
101 TIGR02552 LcrH_SycD type III s 99.7 6.1E-15 1.3E-19 106.7 14.9 118 66-183 5-122 (135)
102 COG3071 HemY Uncharacterized e 99.7 3.7E-12 8E-17 102.2 30.6 257 34-313 86-390 (400)
103 PRK15363 pathogenicity island 99.6 2.6E-14 5.6E-19 101.4 14.8 122 173-330 27-152 (157)
104 KOG2376|consensus 99.6 2.7E-13 5.9E-18 113.7 22.6 250 81-340 15-280 (652)
105 KOG1130|consensus 99.6 6.5E-15 1.4E-19 118.3 12.1 254 37-332 22-329 (639)
106 PRK15363 pathogenicity island 99.6 3.4E-14 7.4E-19 100.8 13.2 109 71-179 27-136 (157)
107 KOG0553|consensus 99.6 1.9E-14 4.1E-19 111.4 12.6 120 78-197 81-200 (304)
108 PLN03077 Protein ECB2; Provisi 99.6 6.4E-13 1.4E-17 125.1 25.4 278 30-332 321-639 (857)
109 KOG3785|consensus 99.6 1.8E-12 3.9E-17 102.6 22.6 157 25-193 50-232 (557)
110 KOG1128|consensus 99.6 2.9E-13 6.4E-18 116.2 17.2 203 75-328 395-597 (777)
111 PF12569 NARP1: NMDA receptor- 99.6 8.9E-12 1.9E-16 107.9 26.5 247 77-328 3-272 (517)
112 COG4783 Putative Zn-dependent 99.6 1.2E-12 2.6E-17 107.8 19.8 153 143-331 303-455 (484)
113 PLN03088 SGT1, suppressor of 99.5 4.4E-13 9.5E-18 112.2 15.2 115 183-333 5-119 (356)
114 PF04733 Coatomer_E: Coatomer 99.5 7.1E-13 1.5E-17 107.1 15.1 239 40-334 9-251 (290)
115 COG3071 HemY Uncharacterized e 99.5 1.1E-10 2.4E-15 94.0 26.4 252 82-334 88-377 (400)
116 PLN03088 SGT1, suppressor of 99.5 1.1E-12 2.4E-17 109.9 14.5 113 81-193 5-117 (356)
117 KOG2376|consensus 99.5 2E-10 4.3E-15 96.9 26.9 208 39-283 19-257 (652)
118 KOG3785|consensus 99.5 2.2E-11 4.9E-16 96.5 20.2 161 42-214 32-219 (557)
119 PRK10866 outer membrane biogen 99.5 7.9E-11 1.7E-15 93.0 23.3 184 77-310 31-238 (243)
120 PF13525 YfiO: Outer membrane 99.4 7.5E-11 1.6E-15 91.0 21.1 186 77-304 4-198 (203)
121 KOG4340|consensus 99.4 2E-11 4.4E-16 94.5 16.9 217 43-309 21-266 (459)
122 KOG1915|consensus 99.4 4.7E-09 1E-13 86.7 30.7 282 29-322 70-404 (677)
123 COG4785 NlpI Lipoprotein NlpI, 99.4 8E-11 1.7E-15 87.0 18.2 103 78-180 65-167 (297)
124 PRK04841 transcriptional regul 99.4 6.8E-10 1.5E-14 105.9 30.0 275 32-319 452-766 (903)
125 PF14938 SNAP: Soluble NSF att 99.4 1.2E-10 2.5E-15 94.9 21.1 194 81-333 38-247 (282)
126 TIGR02795 tol_pal_ybgF tol-pal 99.4 1.2E-11 2.6E-16 87.3 13.6 111 180-323 2-115 (119)
127 COG4235 Cytochrome c biogenesi 99.4 9.4E-12 2E-16 97.2 13.7 121 94-214 138-261 (287)
128 PF13414 TPR_11: TPR repeat; P 99.4 2.9E-12 6.2E-17 80.6 8.6 66 250-315 3-69 (69)
129 PF13525 YfiO: Outer membrane 99.4 1.3E-10 2.8E-15 89.7 19.5 159 30-200 3-198 (203)
130 COG4235 Cytochrome c biogenesi 99.4 6.4E-11 1.4E-15 92.7 17.3 134 161-330 137-273 (287)
131 TIGR02795 tol_pal_ybgF tol-pal 99.4 1.7E-11 3.7E-16 86.5 12.8 106 78-183 2-113 (119)
132 PRK10866 outer membrane biogen 99.4 2.1E-10 4.6E-15 90.6 20.1 184 30-275 30-237 (243)
133 PF13414 TPR_11: TPR repeat; P 99.4 2.6E-12 5.6E-17 80.8 7.3 67 77-143 2-69 (69)
134 COG4785 NlpI Lipoprotein NlpI, 99.4 1.5E-10 3.3E-15 85.6 16.9 202 45-281 59-268 (297)
135 KOG1915|consensus 99.4 7.5E-10 1.6E-14 91.2 22.4 211 70-318 65-278 (677)
136 PRK11906 transcriptional regul 99.4 1.2E-10 2.5E-15 96.9 18.0 133 82-214 259-406 (458)
137 KOG4340|consensus 99.3 4.4E-11 9.5E-16 92.7 13.8 187 89-313 21-207 (459)
138 PF13432 TPR_16: Tetratricopep 99.3 8.5E-12 1.8E-16 77.4 8.0 65 254-318 1-65 (65)
139 cd00189 TPR Tetratricopeptide 99.3 4.4E-11 9.5E-16 80.7 12.3 99 182-316 2-100 (100)
140 cd00189 TPR Tetratricopeptide 99.3 3.5E-11 7.6E-16 81.2 11.7 98 80-177 2-99 (100)
141 PRK10153 DNA-binding transcrip 99.3 1.7E-10 3.7E-15 100.6 18.7 142 72-214 331-487 (517)
142 PRK02603 photosystem I assembl 99.3 6.2E-11 1.3E-15 89.2 13.7 67 252-318 74-154 (172)
143 PRK02603 photosystem I assembl 99.3 4.1E-11 8.9E-16 90.2 12.7 98 74-171 31-131 (172)
144 PRK15331 chaperone protein Sic 99.3 1.1E-10 2.4E-15 83.5 13.8 110 70-180 29-138 (165)
145 PF09976 TPR_21: Tetratricopep 99.3 1.6E-10 3.5E-15 84.2 15.1 115 91-206 24-144 (145)
146 COG0457 NrfG FOG: TPR repeat [ 99.3 8.5E-09 1.8E-13 82.4 26.9 211 70-316 49-268 (291)
147 CHL00033 ycf3 photosystem I as 99.3 7.6E-11 1.6E-15 88.4 13.7 124 162-318 15-154 (168)
148 PRK15331 chaperone protein Sic 99.3 1E-10 2.2E-15 83.6 13.4 121 175-332 32-152 (165)
149 PF14938 SNAP: Soluble NSF att 99.3 5E-10 1.1E-14 91.2 19.3 224 31-318 34-271 (282)
150 KOG4648|consensus 99.3 2E-12 4.3E-17 101.9 5.0 241 36-333 101-350 (536)
151 KOG1070|consensus 99.3 1.4E-09 3.1E-14 100.1 23.3 216 64-314 1444-1664(1710)
152 KOG2047|consensus 99.3 2.6E-08 5.7E-13 85.3 28.9 247 31-315 247-581 (835)
153 PF09976 TPR_21: Tetratricopep 99.3 1.9E-10 4.2E-15 83.8 14.5 129 44-173 11-145 (145)
154 PRK11906 transcriptional regul 99.3 2.3E-10 4.9E-15 95.2 16.3 146 61-206 275-433 (458)
155 KOG3081|consensus 99.3 4.6E-09 1E-13 80.3 21.8 262 40-323 16-281 (299)
156 CHL00033 ycf3 photosystem I as 99.3 1.2E-10 2.5E-15 87.4 13.5 102 77-178 34-152 (168)
157 PF12895 Apc3: Anaphase-promot 99.3 2.6E-11 5.5E-16 79.4 8.3 84 192-310 1-84 (84)
158 PRK10153 DNA-binding transcrip 99.3 2.8E-10 6E-15 99.4 16.5 142 27-181 334-488 (517)
159 KOG0543|consensus 99.3 2.1E-10 4.6E-15 93.0 14.4 130 183-333 211-340 (397)
160 PF13432 TPR_16: Tetratricopep 99.2 3.6E-11 7.8E-16 74.5 6.7 63 83-145 2-64 (65)
161 PF12895 Apc3: Anaphase-promot 99.2 7.6E-11 1.6E-15 77.2 8.3 81 159-276 2-84 (84)
162 PRK04841 transcriptional regul 99.2 1.7E-08 3.7E-13 96.4 27.5 210 78-315 409-643 (903)
163 KOG1941|consensus 99.2 4.7E-09 1E-13 83.8 19.2 240 37-314 11-276 (518)
164 COG0457 NrfG FOG: TPR repeat [ 99.2 5.8E-08 1.3E-12 77.5 26.2 202 33-282 60-268 (291)
165 KOG1941|consensus 99.2 3.8E-09 8.2E-14 84.3 18.2 241 29-311 80-358 (518)
166 KOG0543|consensus 99.2 8.1E-10 1.7E-14 89.7 14.6 135 79-213 209-359 (397)
167 PRK10803 tol-pal system protei 99.2 1.2E-09 2.7E-14 86.8 15.1 111 180-323 142-256 (263)
168 PRK10803 tol-pal system protei 99.2 1.8E-09 3.9E-14 85.9 15.1 108 146-286 142-253 (263)
169 KOG2053|consensus 99.2 1.6E-07 3.6E-12 83.4 28.2 229 54-317 19-259 (932)
170 PF14559 TPR_19: Tetratricopep 99.2 2.3E-10 5E-15 71.7 7.9 68 260-327 1-68 (68)
171 PF12688 TPR_5: Tetratrico pep 99.2 9.7E-10 2.1E-14 75.8 11.3 96 79-174 2-103 (120)
172 PF09295 ChAPs: ChAPs (Chs5p-A 99.1 3E-09 6.4E-14 89.0 15.0 123 152-313 175-297 (395)
173 KOG4234|consensus 99.1 1.2E-09 2.6E-14 79.8 10.4 114 183-327 98-211 (271)
174 PF09295 ChAPs: ChAPs (Chs5p-A 99.1 4E-09 8.6E-14 88.2 14.9 121 117-276 174-294 (395)
175 KOG3081|consensus 99.1 1.2E-07 2.6E-12 72.8 21.0 164 79-285 109-277 (299)
176 COG3898 Uncharacterized membra 99.1 8.9E-07 1.9E-11 71.8 26.1 266 29-313 117-392 (531)
177 PF13371 TPR_9: Tetratricopept 99.1 9.5E-10 2.1E-14 69.9 7.9 71 256-326 1-71 (73)
178 PF12688 TPR_5: Tetratrico pep 99.1 5.3E-09 1.2E-13 72.2 11.6 99 181-312 2-103 (120)
179 COG4105 ComL DNA uptake lipopr 99.1 5.1E-07 1.1E-11 69.6 23.3 192 77-318 33-238 (254)
180 COG4700 Uncharacterized protei 99.0 1.7E-07 3.6E-12 68.1 17.3 63 150-212 93-156 (251)
181 COG4700 Uncharacterized protei 99.0 2.3E-07 5.1E-12 67.3 17.5 153 87-277 65-220 (251)
182 PF14559 TPR_19: Tetratricopep 99.0 1.9E-09 4.1E-14 67.5 6.2 62 125-186 4-65 (68)
183 COG1729 Uncharacterized protei 99.0 2E-08 4.4E-13 77.9 12.8 108 183-323 144-254 (262)
184 PF13512 TPR_18: Tetratricopep 99.0 4.8E-08 1E-12 68.6 13.3 70 252-321 49-136 (142)
185 KOG2047|consensus 99.0 5.4E-07 1.2E-11 77.5 21.9 161 42-213 357-544 (835)
186 KOG3617|consensus 98.9 1.7E-06 3.7E-11 76.7 24.8 259 38-310 806-1171(1416)
187 KOG4648|consensus 98.9 7E-09 1.5E-13 82.3 9.1 109 183-327 100-208 (536)
188 PF13371 TPR_9: Tetratricopept 98.9 8.7E-09 1.9E-13 65.4 8.1 62 86-147 3-64 (73)
189 COG1729 Uncharacterized protei 98.9 6.8E-08 1.5E-12 75.0 14.3 107 149-288 144-253 (262)
190 PF13512 TPR_18: Tetratricopep 98.9 8E-08 1.7E-12 67.4 13.0 104 77-180 9-133 (142)
191 KOG1070|consensus 98.9 5E-07 1.1E-11 84.1 20.2 196 93-325 1439-1641(1710)
192 KOG2471|consensus 98.9 5.4E-07 1.2E-11 75.1 18.4 117 31-158 239-381 (696)
193 COG4105 ComL DNA uptake lipopr 98.9 6.5E-07 1.4E-11 69.0 17.7 194 29-284 31-238 (254)
194 KOG4234|consensus 98.9 8.5E-08 1.8E-12 70.4 12.2 112 78-189 95-211 (271)
195 KOG2796|consensus 98.9 2.3E-06 5.1E-11 65.8 20.0 155 128-318 165-320 (366)
196 KOG1586|consensus 98.8 1.5E-06 3.3E-11 65.5 18.2 136 157-322 84-233 (288)
197 PF13424 TPR_12: Tetratricopep 98.8 9E-09 1.9E-13 66.3 5.1 72 179-279 4-75 (78)
198 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 2.9E-08 6.2E-13 82.8 9.3 69 245-313 70-141 (453)
199 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 2.3E-08 4.9E-13 83.4 8.6 71 72-142 69-142 (453)
200 PF13424 TPR_12: Tetratricopep 98.8 1.1E-08 2.5E-13 65.8 5.2 67 75-141 2-75 (78)
201 PF06552 TOM20_plant: Plant sp 98.8 2.2E-07 4.8E-12 67.4 11.5 96 196-327 7-123 (186)
202 KOG4555|consensus 98.7 8.5E-07 1.8E-11 60.4 12.4 97 183-315 46-146 (175)
203 PF06552 TOM20_plant: Plant sp 98.7 7.8E-07 1.7E-11 64.6 12.5 96 162-293 7-123 (186)
204 KOG4555|consensus 98.7 5.8E-07 1.3E-11 61.2 11.0 99 152-282 49-147 (175)
205 PF04184 ST7: ST7 protein; In 98.7 9.3E-06 2E-10 68.4 19.8 208 83-329 173-430 (539)
206 KOG2610|consensus 98.7 8E-06 1.7E-10 65.2 18.0 165 81-277 106-274 (491)
207 KOG1585|consensus 98.6 4.3E-05 9.4E-10 58.3 20.9 200 78-308 31-251 (308)
208 KOG4507|consensus 98.6 2.2E-06 4.7E-11 73.2 15.4 77 251-327 643-719 (886)
209 KOG2471|consensus 98.6 1.4E-06 3E-11 72.8 13.7 150 151-330 211-381 (696)
210 PF05843 Suf: Suppressor of fo 98.6 3.8E-06 8.2E-11 68.3 16.1 138 114-284 3-141 (280)
211 KOG2610|consensus 98.6 6.5E-06 1.4E-10 65.7 16.4 165 118-318 109-283 (491)
212 KOG2796|consensus 98.6 1.1E-05 2.4E-10 62.2 16.7 135 79-213 178-319 (366)
213 COG3898 Uncharacterized membra 98.6 0.00023 5E-09 58.3 25.5 203 78-318 120-363 (531)
214 PF05843 Suf: Suppressor of fo 98.6 7.2E-06 1.6E-10 66.7 16.4 135 79-213 2-140 (280)
215 PF13428 TPR_14: Tetratricopep 98.6 1.7E-07 3.6E-12 52.5 4.8 42 285-326 2-43 (44)
216 KOG3617|consensus 98.6 1.6E-05 3.4E-10 70.9 18.9 171 26-209 751-941 (1416)
217 PF13428 TPR_14: Tetratricopep 98.5 2.1E-07 4.5E-12 52.1 4.5 42 79-120 2-43 (44)
218 KOG1914|consensus 98.5 0.00021 4.6E-09 60.9 23.3 46 60-105 35-80 (656)
219 KOG2053|consensus 98.5 4.3E-05 9.4E-10 68.7 20.3 125 89-214 20-144 (932)
220 KOG4642|consensus 98.5 2.9E-07 6.2E-12 69.6 6.0 95 81-175 13-107 (284)
221 PF13281 DUF4071: Domain of un 98.5 0.00018 3.8E-09 59.9 22.6 118 77-195 140-274 (374)
222 KOG4642|consensus 98.5 2.6E-06 5.7E-11 64.5 10.9 98 117-214 15-112 (284)
223 KOG1586|consensus 98.5 0.00011 2.4E-09 55.8 19.3 176 31-214 33-229 (288)
224 PF13281 DUF4071: Domain of un 98.4 8.2E-05 1.8E-09 61.8 19.2 176 112-324 141-345 (374)
225 KOG0545|consensus 98.4 1.6E-05 3.4E-10 60.7 13.4 122 180-321 178-301 (329)
226 KOG0530|consensus 98.4 0.00016 3.5E-09 55.9 18.8 241 46-322 40-307 (318)
227 KOG1585|consensus 98.4 4.2E-05 9E-10 58.4 15.4 170 114-313 33-219 (308)
228 KOG0985|consensus 98.4 0.00071 1.5E-08 62.2 25.2 200 77-332 1103-1327(1666)
229 PF04184 ST7: ST7 protein; In 98.4 4.5E-05 9.9E-10 64.4 16.7 168 117-320 173-382 (539)
230 PF13431 TPR_17: Tetratricopep 98.3 5.3E-07 1.2E-11 47.0 3.0 34 272-305 1-34 (34)
231 KOG3616|consensus 98.3 0.0002 4.4E-09 63.5 19.6 157 31-207 660-818 (1636)
232 PF13431 TPR_17: Tetratricopep 98.3 4.6E-07 1E-11 47.2 2.3 32 101-132 2-33 (34)
233 KOG2300|consensus 98.3 0.00073 1.6E-08 57.0 21.6 258 9-307 254-550 (629)
234 PF10300 DUF3808: Protein of u 98.3 0.0019 4.2E-08 56.6 25.4 162 120-314 196-377 (468)
235 PF00515 TPR_1: Tetratricopept 98.3 1.8E-06 3.9E-11 45.3 4.2 31 286-316 3-33 (34)
236 PF07719 TPR_2: Tetratricopept 98.3 2.8E-06 6E-11 44.5 4.6 33 285-317 2-34 (34)
237 PF02259 FAT: FAT domain; Int 98.2 0.0014 3.1E-08 55.7 23.3 128 177-336 143-310 (352)
238 KOG0551|consensus 98.2 0.00016 3.4E-09 57.9 15.7 106 30-144 79-185 (390)
239 PF02259 FAT: FAT domain; Int 98.2 0.0013 2.8E-08 55.9 22.9 173 142-316 142-341 (352)
240 KOG0376|consensus 98.2 3E-06 6.5E-11 70.9 6.5 97 53-149 13-109 (476)
241 KOG0376|consensus 98.2 2.2E-06 4.7E-11 71.7 5.6 109 185-329 9-117 (476)
242 PF00515 TPR_1: Tetratricopept 98.2 4.2E-06 9.1E-11 43.8 4.6 33 251-283 2-34 (34)
243 KOG0551|consensus 98.2 2.7E-05 5.9E-10 62.1 10.6 108 181-320 82-189 (390)
244 PF07719 TPR_2: Tetratricopept 98.2 4.2E-06 9E-11 43.9 4.3 34 78-111 1-34 (34)
245 PF10300 DUF3808: Protein of u 98.2 0.00013 2.8E-09 63.9 15.5 154 91-279 201-376 (468)
246 COG3118 Thioredoxin domain-con 98.1 0.00062 1.4E-08 53.9 17.0 135 77-213 133-269 (304)
247 KOG0545|consensus 98.1 3.4E-05 7.5E-10 58.9 9.7 103 78-180 178-298 (329)
248 PF07079 DUF1347: Protein of u 98.0 0.0057 1.2E-07 51.5 27.8 140 187-335 386-547 (549)
249 KOG4507|consensus 98.0 0.00024 5.1E-09 61.3 13.9 103 190-294 617-720 (886)
250 PF03704 BTAD: Bacterial trans 98.0 0.00073 1.6E-08 49.3 15.2 111 187-312 13-124 (146)
251 KOG1914|consensus 98.0 0.0078 1.7E-07 51.8 21.4 215 65-315 266-503 (656)
252 COG3118 Thioredoxin domain-con 97.9 0.0027 5.8E-08 50.5 17.1 155 37-205 139-297 (304)
253 PF13181 TPR_8: Tetratricopept 97.9 2.6E-05 5.5E-10 40.8 4.1 32 285-316 2-33 (34)
254 COG2976 Uncharacterized protei 97.9 0.0026 5.6E-08 47.3 15.4 94 82-176 93-189 (207)
255 PF04910 Tcf25: Transcriptiona 97.9 0.0029 6.3E-08 53.3 17.9 144 70-213 32-226 (360)
256 COG0790 FOG: TPR repeat, SEL1 97.9 0.01 2.3E-07 48.9 20.8 185 89-318 52-271 (292)
257 KOG1550|consensus 97.9 0.02 4.4E-07 51.6 25.4 270 30-318 242-543 (552)
258 COG2976 Uncharacterized protei 97.8 0.0016 3.5E-08 48.3 13.7 61 252-314 128-189 (207)
259 PF08424 NRDE-2: NRDE-2, neces 97.8 0.0039 8.5E-08 52.0 18.0 135 128-280 47-184 (321)
260 KOG0530|consensus 97.8 0.0082 1.8E-07 46.8 20.2 206 87-328 52-269 (318)
261 PF03704 BTAD: Bacterial trans 97.8 0.00065 1.4E-08 49.5 12.0 117 82-211 10-127 (146)
262 KOG1308|consensus 97.8 4.8E-05 1.1E-09 61.0 5.2 92 86-177 122-213 (377)
263 KOG0985|consensus 97.7 0.013 2.9E-07 54.3 20.5 222 32-296 1104-1325(1666)
264 PF13181 TPR_8: Tetratricopept 97.7 6.5E-05 1.4E-09 39.2 4.0 32 251-282 2-33 (34)
265 PF08631 SPO22: Meiosis protei 97.7 0.016 3.6E-07 47.3 25.9 160 42-210 3-187 (278)
266 PF08424 NRDE-2: NRDE-2, neces 97.7 0.0046 1E-07 51.5 16.5 147 67-213 8-187 (321)
267 PF14853 Fis1_TPR_C: Fis1 C-te 97.7 0.00034 7.4E-09 40.3 6.7 46 286-331 3-48 (53)
268 KOG1308|consensus 97.7 6E-05 1.3E-09 60.5 4.3 95 119-213 121-215 (377)
269 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.03 6.4E-07 47.4 19.8 216 65-319 289-537 (660)
270 KOG1258|consensus 97.6 0.039 8.5E-07 48.3 23.0 120 180-304 297-420 (577)
271 PF13176 TPR_7: Tetratricopept 97.6 8.7E-05 1.9E-09 39.2 3.0 25 287-311 2-26 (36)
272 KOG1258|consensus 97.6 0.046 9.9E-07 48.0 22.1 191 77-298 296-489 (577)
273 PF04910 Tcf25: Transcriptiona 97.6 0.0076 1.6E-07 50.9 15.9 98 183-315 106-224 (360)
274 PF13174 TPR_6: Tetratricopept 97.6 0.00016 3.6E-09 37.3 3.9 30 287-316 3-32 (33)
275 KOG1464|consensus 97.6 0.012 2.6E-07 46.2 15.3 200 91-314 40-261 (440)
276 KOG3616|consensus 97.5 0.0082 1.8E-07 53.8 15.4 159 38-207 712-909 (1636)
277 PF13174 TPR_6: Tetratricopept 97.5 0.00038 8.2E-09 35.9 4.7 32 252-283 2-33 (33)
278 PF13176 TPR_7: Tetratricopept 97.5 0.00029 6.2E-09 37.2 4.1 32 182-213 1-32 (36)
279 COG0790 FOG: TPR repeat, SEL1 97.5 0.043 9.4E-07 45.3 22.4 154 40-211 49-222 (292)
280 PF14561 TPR_20: Tetratricopep 97.5 0.0013 2.8E-08 43.1 7.9 67 269-335 7-75 (90)
281 KOG1550|consensus 97.5 0.039 8.5E-07 49.8 19.7 133 74-210 240-394 (552)
282 PRK10941 hypothetical protein; 97.4 0.0023 5E-08 51.3 10.6 77 250-326 181-257 (269)
283 KOG0890|consensus 97.4 0.22 4.9E-06 50.9 24.7 274 37-314 1388-1732(2382)
284 KOG3364|consensus 97.4 0.0073 1.6E-07 42.0 10.7 84 250-333 32-120 (149)
285 PF09613 HrpB1_HrpK: Bacterial 97.3 0.004 8.6E-08 45.1 9.7 81 251-331 11-91 (160)
286 COG2909 MalT ATP-dependent tra 97.3 0.13 2.8E-06 47.5 24.3 117 78-194 415-551 (894)
287 PF04781 DUF627: Protein of un 97.3 0.0031 6.7E-08 42.3 8.4 44 131-174 63-106 (111)
288 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.083 1.8E-06 44.9 19.6 46 71-116 35-80 (660)
289 PF09613 HrpB1_HrpK: Bacterial 97.3 0.0048 1E-07 44.6 9.7 77 119-195 17-93 (160)
290 KOG2300|consensus 97.3 0.097 2.1E-06 44.8 21.7 168 38-214 329-519 (629)
291 KOG2041|consensus 97.3 0.033 7.3E-07 49.7 16.2 206 71-308 686-902 (1189)
292 KOG3824|consensus 97.2 0.0018 3.8E-08 51.6 7.3 73 254-326 120-192 (472)
293 PF08631 SPO22: Meiosis protei 97.2 0.079 1.7E-06 43.3 17.3 135 158-315 5-152 (278)
294 COG2909 MalT ATP-dependent tra 97.2 0.19 4.2E-06 46.4 23.6 237 34-310 417-685 (894)
295 PF04781 DUF627: Protein of un 97.1 0.018 3.8E-07 38.8 10.5 30 250-279 78-107 (111)
296 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.0048 1E-07 35.6 6.9 43 251-293 2-44 (53)
297 PF14561 TPR_20: Tetratricopep 97.1 0.011 2.4E-07 38.7 9.3 60 70-129 14-75 (90)
298 KOG3824|consensus 97.1 0.0025 5.4E-08 50.8 7.1 60 61-120 133-192 (472)
299 smart00028 TPR Tetratricopepti 97.1 0.0013 2.8E-08 33.3 4.0 30 286-315 3-32 (34)
300 PRK15180 Vi polysaccharide bio 97.0 0.017 3.8E-07 49.1 11.8 126 89-214 300-425 (831)
301 PF10345 Cohesin_load: Cohesin 97.0 0.28 6.1E-06 45.1 25.3 256 19-312 290-605 (608)
302 KOG2396|consensus 97.0 0.018 3.9E-07 49.3 11.4 93 60-152 87-180 (568)
303 KOG3783|consensus 96.9 0.24 5.2E-06 43.2 22.6 238 66-318 255-525 (546)
304 PF12968 DUF3856: Domain of Un 96.9 0.061 1.3E-06 36.6 11.4 96 159-279 22-129 (144)
305 KOG2041|consensus 96.9 0.14 3.1E-06 45.9 16.8 162 28-205 688-877 (1189)
306 smart00028 TPR Tetratricopepti 96.9 0.0026 5.6E-08 32.1 4.3 32 251-282 2-33 (34)
307 PRK10941 hypothetical protein; 96.9 0.011 2.4E-07 47.5 9.4 75 115-189 184-258 (269)
308 COG4976 Predicted methyltransf 96.9 0.0018 3.8E-08 49.3 4.6 62 259-320 4-65 (287)
309 KOG2396|consensus 96.9 0.021 4.6E-07 48.8 11.2 61 60-120 121-182 (568)
310 PF09986 DUF2225: Uncharacteri 96.8 0.027 6E-07 43.7 10.9 69 250-318 118-199 (214)
311 KOG0890|consensus 96.8 0.72 1.6E-05 47.6 22.4 117 180-334 1670-1805(2382)
312 TIGR02561 HrpB1_HrpK type III 96.8 0.021 4.5E-07 40.7 9.1 73 124-196 22-94 (153)
313 KOG4814|consensus 96.8 0.024 5.1E-07 50.0 11.2 102 183-314 357-458 (872)
314 PF12968 DUF3856: Domain of Un 96.8 0.086 1.9E-06 35.9 12.2 101 189-313 18-129 (144)
315 COG3914 Spy Predicted O-linked 96.8 0.15 3.3E-06 44.8 15.6 83 131-213 50-135 (620)
316 TIGR02561 HrpB1_HrpK type III 96.7 0.022 4.8E-07 40.5 8.7 80 253-332 13-92 (153)
317 PF10345 Cohesin_load: Cohesin 96.7 0.48 1E-05 43.6 30.8 273 25-308 52-428 (608)
318 PF10602 RPN7: 26S proteasome 96.6 0.097 2.1E-06 39.4 11.9 65 78-142 36-103 (177)
319 KOG1839|consensus 96.5 0.077 1.7E-06 51.0 13.4 173 79-279 933-1128(1236)
320 KOG3364|consensus 96.5 0.12 2.6E-06 36.2 10.8 77 179-290 31-111 (149)
321 PRK15180 Vi polysaccharide bio 96.5 0.036 7.7E-07 47.4 9.9 123 157-315 300-422 (831)
322 KOG2422|consensus 96.5 0.26 5.5E-06 43.3 15.0 116 91-206 251-404 (665)
323 COG4649 Uncharacterized protei 96.5 0.22 4.8E-06 36.6 16.1 144 157-333 69-215 (221)
324 PF04053 Coatomer_WDAD: Coatom 96.4 0.46 9.9E-06 41.6 16.3 101 89-206 272-373 (443)
325 COG4976 Predicted methyltransf 96.3 0.008 1.7E-07 45.9 4.8 60 87-146 4-63 (287)
326 PF09986 DUF2225: Uncharacteri 96.3 0.21 4.6E-06 38.8 12.9 79 27-110 113-197 (214)
327 PF13374 TPR_10: Tetratricopep 96.3 0.011 2.5E-07 32.1 4.3 29 251-279 3-31 (42)
328 COG3914 Spy Predicted O-linked 96.3 0.38 8.3E-06 42.4 15.0 118 72-189 59-185 (620)
329 KOG3783|consensus 96.3 0.46 1E-05 41.5 15.3 206 35-282 270-523 (546)
330 KOG1839|consensus 96.2 0.099 2.1E-06 50.3 12.3 176 31-212 931-1131(1236)
331 COG5191 Uncharacterized conser 96.2 0.019 4.2E-07 46.0 6.7 86 101-186 96-182 (435)
332 PF10602 RPN7: 26S proteasome 96.2 0.089 1.9E-06 39.6 10.0 102 148-279 38-142 (177)
333 KOG1538|consensus 96.2 0.9 1.9E-05 40.8 18.4 69 35-104 588-658 (1081)
334 COG4649 Uncharacterized protei 96.1 0.38 8.3E-06 35.4 14.8 136 124-295 70-211 (221)
335 KOG2422|consensus 96.0 0.41 8.9E-06 42.1 13.9 141 72-213 278-452 (665)
336 KOG1310|consensus 96.0 0.032 6.9E-07 48.2 7.3 90 193-318 387-479 (758)
337 KOG1310|consensus 95.9 0.032 6.9E-07 48.2 7.0 92 53-144 383-477 (758)
338 KOG4814|consensus 95.9 0.11 2.5E-06 46.0 10.3 95 81-175 357-457 (872)
339 KOG1464|consensus 95.9 0.42 9.2E-06 37.9 12.4 168 125-316 40-223 (440)
340 COG5191 Uncharacterized conser 95.8 0.023 4.9E-07 45.6 5.4 83 70-152 99-182 (435)
341 PF13374 TPR_10: Tetratricopep 95.8 0.022 4.7E-07 30.9 4.1 29 285-313 3-31 (42)
342 COG2912 Uncharacterized conser 95.7 0.1 2.3E-06 41.4 8.5 77 250-326 181-257 (269)
343 PF12862 Apc5: Anaphase-promot 95.6 0.065 1.4E-06 35.5 6.3 65 190-281 8-72 (94)
344 KOG3807|consensus 95.5 1.1 2.4E-05 36.8 17.7 118 82-212 188-307 (556)
345 PF12862 Apc5: Anaphase-promot 95.4 0.32 7E-06 32.2 9.0 58 157-214 9-75 (94)
346 KOG0529|consensus 95.3 1.4 3.1E-05 37.3 14.1 178 95-330 46-241 (421)
347 PF10373 EST1_DNA_bind: Est1 D 95.3 0.12 2.6E-06 42.3 8.3 62 269-330 1-62 (278)
348 PF15015 NYD-SP12_N: Spermatog 95.2 0.17 3.7E-06 42.7 8.6 108 186-311 182-289 (569)
349 KOG0529|consensus 95.0 1.9 4.1E-05 36.6 16.1 157 61-217 46-232 (421)
350 PF07720 TPR_3: Tetratricopept 94.9 0.1 2.3E-06 27.3 4.4 30 286-315 3-34 (36)
351 PF07720 TPR_3: Tetratricopept 94.9 0.099 2.1E-06 27.4 4.3 32 79-110 2-35 (36)
352 PF04053 Coatomer_WDAD: Coatom 94.7 2.8 6E-05 36.8 16.6 82 111-205 346-427 (443)
353 PF07721 TPR_4: Tetratricopept 94.6 0.062 1.3E-06 25.7 3.0 21 287-307 4-24 (26)
354 PF07079 DUF1347: Protein of u 94.6 2.7 5.9E-05 36.2 21.7 131 80-210 8-158 (549)
355 COG3629 DnrI DNA-binding trans 94.5 0.3 6.5E-06 39.4 8.1 64 250-313 153-216 (280)
356 PF15015 NYD-SP12_N: Spermatog 94.5 0.68 1.5E-05 39.3 10.3 58 81-138 231-288 (569)
357 COG2912 Uncharacterized conser 94.5 0.29 6.2E-06 39.0 7.9 70 117-186 186-255 (269)
358 KOG2581|consensus 94.5 2.7 5.7E-05 35.7 14.4 66 252-317 211-280 (493)
359 PF10579 Rapsyn_N: Rapsyn N-te 94.5 0.57 1.2E-05 29.4 7.5 60 152-211 12-74 (80)
360 PF07721 TPR_4: Tetratricopept 94.3 0.071 1.5E-06 25.5 2.7 22 80-101 3-24 (26)
361 COG3629 DnrI DNA-binding trans 94.2 0.31 6.7E-06 39.3 7.7 65 111-175 152-216 (280)
362 PRK13184 pknD serine/threonine 94.0 0.73 1.6E-05 44.1 10.9 106 185-324 480-592 (932)
363 PF10516 SHNi-TPR: SHNi-TPR; 94.0 0.093 2E-06 27.8 3.0 28 80-107 3-30 (38)
364 KOG2114|consensus 93.9 3 6.6E-05 38.8 13.8 52 55-107 345-397 (933)
365 PF10516 SHNi-TPR: SHNi-TPR; 93.9 0.14 3.1E-06 27.1 3.6 29 285-313 2-30 (38)
366 PRK13184 pknD serine/threonine 93.6 7.4 0.00016 37.7 19.9 129 84-213 481-624 (932)
367 COG4455 ImpE Protein of avirul 93.6 0.56 1.2E-05 36.0 7.5 65 257-321 8-72 (273)
368 KOG3807|consensus 93.4 3.8 8.2E-05 33.8 16.6 144 151-309 189-336 (556)
369 COG5159 RPN6 26S proteasome re 93.4 3.5 7.5E-05 33.3 16.2 202 83-314 8-236 (421)
370 PF10579 Rapsyn_N: Rapsyn N-te 93.4 1 2.3E-05 28.3 7.2 53 84-136 12-67 (80)
371 PRK11619 lytic murein transgly 93.0 7.7 0.00017 36.1 25.9 57 256-312 318-374 (644)
372 PF11207 DUF2989: Protein of u 92.9 3.3 7.1E-05 31.6 13.6 54 250-304 141-198 (203)
373 PF10373 EST1_DNA_bind: Est1 D 92.9 0.42 9.1E-06 39.0 6.8 62 97-158 1-62 (278)
374 COG4941 Predicted RNA polymera 92.9 4.8 0.0001 33.4 16.5 162 129-327 213-408 (415)
375 COG1747 Uncharacterized N-term 92.7 6.6 0.00014 34.6 23.3 60 258-317 213-292 (711)
376 PF11207 DUF2989: Protein of u 92.7 2.4 5.1E-05 32.4 9.7 73 127-200 121-198 (203)
377 KOG0546|consensus 92.5 0.29 6.2E-06 40.4 5.0 127 186-329 228-354 (372)
378 KOG1538|consensus 92.0 9.4 0.0002 34.8 14.6 22 37-58 637-658 (1081)
379 COG3947 Response regulator con 92.0 0.78 1.7E-05 36.9 6.7 59 115-173 282-340 (361)
380 COG3947 Response regulator con 92.0 0.75 1.6E-05 37.0 6.6 60 252-311 281-340 (361)
381 KOG1463|consensus 91.7 6.9 0.00015 32.5 20.3 256 33-332 49-332 (411)
382 TIGR03504 FimV_Cterm FimV C-te 91.4 1.2 2.6E-05 24.5 5.2 23 289-311 4-26 (44)
383 PF10255 Paf67: RNA polymerase 91.2 5.9 0.00013 34.2 11.6 58 152-209 128-193 (404)
384 PF10255 Paf67: RNA polymerase 91.2 2.1 4.6E-05 36.8 9.0 68 183-278 125-192 (404)
385 smart00386 HAT HAT (Half-A-TPR 91.2 0.74 1.6E-05 22.9 4.2 29 160-188 1-29 (33)
386 PF00244 14-3-3: 14-3-3 protei 91.0 6.7 0.00015 31.2 13.4 60 81-140 4-65 (236)
387 smart00386 HAT HAT (Half-A-TPR 90.9 0.73 1.6E-05 22.9 4.0 27 265-291 2-28 (33)
388 PF11817 Foie-gras_1: Foie gra 90.7 2.5 5.3E-05 34.0 8.7 61 78-138 178-244 (247)
389 TIGR03504 FimV_Cterm FimV C-te 90.4 0.69 1.5E-05 25.5 3.6 26 254-279 3-28 (44)
390 PF09670 Cas_Cas02710: CRISPR- 90.3 5.4 0.00012 34.4 10.8 23 85-107 176-198 (379)
391 PF09670 Cas_Cas02710: CRISPR- 90.2 11 0.00024 32.5 12.6 58 152-209 137-198 (379)
392 COG1747 Uncharacterized N-term 90.0 13 0.00029 32.9 16.6 78 190-283 215-292 (711)
393 smart00299 CLH Clathrin heavy 89.9 5.7 0.00012 28.4 13.8 47 157-204 18-64 (140)
394 PF12854 PPR_1: PPR repeat 89.8 1.1 2.5E-05 22.9 4.1 24 285-308 8-31 (34)
395 PF13041 PPR_2: PPR repeat fam 89.7 2.4 5.2E-05 23.9 5.8 29 251-279 4-32 (50)
396 PF12854 PPR_1: PPR repeat 89.6 1.1 2.4E-05 23.0 3.9 27 77-103 6-32 (34)
397 cd02682 MIT_AAA_Arch MIT: doma 89.6 3.6 7.8E-05 25.8 7.3 46 32-82 6-51 (75)
398 PF14863 Alkyl_sulf_dimr: Alky 89.3 2.4 5.1E-05 30.5 6.7 50 286-335 72-121 (141)
399 COG5159 RPN6 26S proteasome re 89.2 11 0.00023 30.7 17.5 57 37-97 8-64 (421)
400 PF13041 PPR_2: PPR repeat fam 88.8 2.7 5.7E-05 23.7 5.6 30 180-209 3-32 (50)
401 PF04190 DUF410: Protein of un 88.7 11 0.00025 30.4 17.7 61 76-136 47-114 (260)
402 PF11817 Foie-gras_1: Foie gra 88.5 11 0.00025 30.2 18.7 61 251-311 179-245 (247)
403 PF12739 TRAPPC-Trs85: ER-Golg 88.4 17 0.00036 31.9 15.4 29 80-108 210-238 (414)
404 KOG2063|consensus 88.2 25 0.00055 33.8 18.0 173 81-278 507-712 (877)
405 KOG0546|consensus 87.4 1.4 3.1E-05 36.5 5.0 108 84-191 228-354 (372)
406 COG4941 Predicted RNA polymera 86.8 17 0.00037 30.3 15.3 152 61-213 213-398 (415)
407 PF01535 PPR: PPR repeat; Int 86.8 1.3 2.9E-05 21.6 3.2 26 253-278 3-28 (31)
408 KOG2581|consensus 86.4 20 0.00044 30.7 20.3 147 31-180 125-281 (493)
409 KOG1463|consensus 86.2 19 0.00041 30.1 16.5 101 184-314 132-239 (411)
410 KOG4014|consensus 86.0 13 0.00028 28.1 15.7 161 32-211 34-235 (248)
411 PF11846 DUF3366: Domain of un 85.3 6.3 0.00014 30.2 7.6 53 265-318 126-178 (193)
412 COG5187 RPN7 26S proteasome re 85.1 19 0.00042 29.4 15.2 164 50-213 43-225 (412)
413 PF04190 DUF410: Protein of un 85.1 19 0.00041 29.2 18.6 68 246-313 86-170 (260)
414 PF12739 TRAPPC-Trs85: ER-Golg 84.2 28 0.00061 30.5 13.7 163 34-213 210-403 (414)
415 KOG4279|consensus 83.9 38 0.00083 31.8 12.4 124 77-202 200-343 (1226)
416 KOG4151|consensus 83.9 5.7 0.00012 36.8 7.5 110 185-326 58-169 (748)
417 COG5536 BET4 Protein prenyltra 82.8 24 0.00052 28.6 10.2 139 162-330 90-239 (328)
418 PF14863 Alkyl_sulf_dimr: Alky 82.6 5.8 0.00013 28.5 5.8 51 78-128 70-120 (141)
419 TIGR00756 PPR pentatricopeptid 82.4 3.4 7.3E-05 20.6 3.6 26 253-278 3-28 (35)
420 KOG0276|consensus 81.4 23 0.00051 32.1 10.0 31 76-106 664-694 (794)
421 PF09205 DUF1955: Domain of un 81.3 16 0.00034 26.0 7.2 54 260-313 96-149 (161)
422 KOG4279|consensus 80.8 51 0.0011 31.1 12.3 102 111-213 200-320 (1226)
423 PF09797 NatB_MDM20: N-acetylt 80.2 8.7 0.00019 33.0 7.3 43 94-136 199-241 (365)
424 KOG4014|consensus 79.9 24 0.00051 26.7 14.9 112 76-192 32-156 (248)
425 COG4259 Uncharacterized protei 79.8 15 0.00033 24.4 6.7 54 270-323 57-111 (121)
426 COG3014 Uncharacterized protei 79.8 35 0.00077 28.6 15.7 194 97-317 40-246 (449)
427 KOG2114|consensus 79.4 59 0.0013 31.0 13.9 76 28-103 364-456 (933)
428 cd02680 MIT_calpain7_2 MIT: do 79.2 3.8 8.1E-05 25.7 3.5 16 125-140 19-34 (75)
429 KOG2561|consensus 79.2 23 0.00049 30.8 8.9 106 34-141 165-296 (568)
430 PF13812 PPR_3: Pentatricopept 78.8 6.2 0.00013 19.6 3.9 27 252-278 3-29 (34)
431 PF09797 NatB_MDM20: N-acetylt 78.4 21 0.00045 30.7 9.0 48 125-172 196-243 (365)
432 PF09205 DUF1955: Domain of un 78.1 18 0.0004 25.7 6.8 54 156-209 96-149 (161)
433 PF11846 DUF3366: Domain of un 76.2 12 0.00025 28.7 6.3 48 164-212 129-176 (193)
434 COG4455 ImpE Protein of avirul 75.9 36 0.00078 26.7 13.1 102 188-325 9-128 (273)
435 KOG0687|consensus 75.8 46 0.00099 27.8 12.5 104 180-313 104-210 (393)
436 cd02683 MIT_1 MIT: domain cont 75.1 18 0.00039 22.8 8.6 42 32-78 6-47 (77)
437 KOG1920|consensus 74.8 82 0.0018 31.4 12.1 25 184-208 1003-1027(1265)
438 cd02680 MIT_calpain7_2 MIT: do 74.5 6.4 0.00014 24.7 3.6 17 159-175 19-35 (75)
439 PF00244 14-3-3: 14-3-3 protei 74.5 42 0.00091 26.8 16.9 59 115-173 4-64 (236)
440 cd02682 MIT_AAA_Arch MIT: doma 74.4 19 0.0004 22.6 6.0 26 81-106 9-34 (75)
441 PRK11619 lytic murein transgly 74.3 78 0.0017 29.8 23.7 215 84-310 247-465 (644)
442 smart00299 CLH Clathrin heavy 74.0 29 0.00063 24.7 14.4 33 91-123 20-52 (140)
443 cd02679 MIT_spastin MIT: domai 72.9 9.9 0.00021 24.2 4.2 13 128-140 5-17 (79)
444 KOG2063|consensus 72.8 97 0.0021 30.2 14.6 27 115-141 507-533 (877)
445 PRK12798 chemotaxis protein; R 71.9 67 0.0015 27.9 21.2 210 113-322 113-335 (421)
446 TIGR02710 CRISPR-associated pr 71.6 66 0.0014 27.8 12.0 54 84-137 136-196 (380)
447 PF05053 Menin: Menin; InterP 71.5 80 0.0017 28.7 10.5 90 235-324 262-364 (618)
448 PHA02537 M terminase endonucle 71.4 14 0.0003 29.2 5.5 33 182-214 171-212 (230)
449 PHA02537 M terminase endonucle 70.6 8.7 0.00019 30.2 4.3 21 89-109 94-114 (230)
450 KOG0276|consensus 69.4 93 0.002 28.6 14.1 80 114-209 616-695 (794)
451 PF15469 Sec5: Exocyst complex 69.3 40 0.00086 25.5 7.7 22 191-212 97-118 (182)
452 PRK12798 chemotaxis protein; R 68.8 79 0.0017 27.5 20.4 165 37-213 117-290 (421)
453 PF10952 DUF2753: Protein of u 68.2 38 0.00082 23.7 6.3 66 253-318 4-88 (140)
454 PF07163 Pex26: Pex26 protein; 67.9 66 0.0014 26.3 14.1 88 188-311 91-185 (309)
455 PF07219 HemY_N: HemY protein 67.8 32 0.0007 23.4 6.2 50 78-127 59-108 (108)
456 PF04212 MIT: MIT (microtubule 67.6 17 0.00036 22.2 4.4 27 252-278 7-33 (69)
457 PF13226 DUF4034: Domain of un 67.4 68 0.0015 26.3 10.9 65 268-332 61-147 (277)
458 PF02064 MAS20: MAS20 protein 67.0 18 0.00039 25.2 4.8 29 290-318 69-97 (121)
459 smart00671 SEL1 Sel1-like repe 66.8 14 0.00029 18.6 3.4 27 80-106 3-33 (36)
460 PF08238 Sel1: Sel1 repeat; I 65.5 17 0.00037 18.7 3.8 13 94-106 24-36 (39)
461 PF13226 DUF4034: Domain of un 64.1 80 0.0017 25.9 9.3 36 162-197 115-150 (277)
462 PF01239 PPTA: Protein prenylt 63.9 17 0.00036 17.9 4.0 27 304-330 3-29 (31)
463 KOG0686|consensus 63.7 1E+02 0.0022 26.8 13.8 98 181-311 151-256 (466)
464 COG5187 RPN7 26S proteasome re 62.8 86 0.0019 25.8 14.8 34 180-213 115-148 (412)
465 KOG0687|consensus 62.7 93 0.002 26.1 14.4 101 112-212 104-213 (393)
466 PF12753 Nro1: Nuclear pore co 62.7 9.4 0.0002 32.5 3.3 30 62-93 336-365 (404)
467 cd02681 MIT_calpain7_1 MIT: do 61.8 23 0.00049 22.4 4.2 29 251-279 7-35 (76)
468 KOG4563|consensus 61.5 47 0.001 28.2 6.9 67 30-101 39-106 (400)
469 PF12753 Nro1: Nuclear pore co 60.6 19 0.00042 30.8 4.7 31 95-127 335-365 (404)
470 PF02064 MAS20: MAS20 protein 60.5 33 0.00071 24.0 5.1 35 252-286 65-99 (121)
471 PF07219 HemY_N: HemY protein 59.7 53 0.0011 22.3 6.5 46 253-298 62-107 (108)
472 cd02683 MIT_1 MIT: domain cont 59.3 26 0.00057 22.1 4.2 27 252-278 8-34 (77)
473 KOG1497|consensus 59.1 1.1E+02 0.0023 25.7 10.9 97 31-140 102-212 (399)
474 PRK15490 Vi polysaccharide bio 58.9 1.2E+02 0.0025 28.0 9.5 74 61-136 25-98 (578)
475 PF04212 MIT: MIT (microtubule 56.5 43 0.00094 20.4 8.2 38 34-76 7-44 (69)
476 PF02184 HAT: HAT (Half-A-TPR) 55.9 27 0.00058 17.7 3.5 24 265-289 2-25 (32)
477 PF14929 TAF1_subA: TAF RNA Po 55.8 1.7E+02 0.0036 26.9 14.1 46 250-295 411-466 (547)
478 PF12583 TPPII_N: Tripeptidyl 55.7 47 0.001 23.5 5.1 34 296-329 88-121 (139)
479 PRK15490 Vi polysaccharide bio 55.7 1.3E+02 0.0029 27.7 9.3 41 60-102 58-98 (578)
480 KOG2062|consensus 55.2 1.9E+02 0.0042 27.5 10.7 32 74-105 55-86 (929)
481 cd02681 MIT_calpain7_1 MIT: do 55.1 28 0.0006 22.0 3.7 18 89-106 17-34 (76)
482 KOG1920|consensus 54.9 2.4E+02 0.0052 28.5 15.3 16 123-138 891-906 (1265)
483 KOG2758|consensus 54.9 1.3E+02 0.0028 25.3 17.0 69 73-141 124-196 (432)
484 PF05053 Menin: Menin; InterP 54.8 1.2E+02 0.0025 27.7 8.5 30 250-279 318-347 (618)
485 cd00280 TRFH Telomeric Repeat 53.7 74 0.0016 24.2 6.2 47 255-302 116-162 (200)
486 TIGR03362 VI_chp_7 type VI sec 53.5 1.3E+02 0.0029 25.1 15.2 135 72-208 94-278 (301)
487 PF04348 LppC: LppC putative l 53.3 4.4 9.6E-05 36.7 0.0 112 97-208 8-126 (536)
488 KOG0686|consensus 51.3 1.7E+02 0.0036 25.6 15.1 103 147-277 151-256 (466)
489 KOG0128|consensus 51.3 2.3E+02 0.0051 27.3 22.6 252 68-322 103-385 (881)
490 PF14689 SPOB_a: Sensor_kinase 51.3 51 0.0011 19.7 4.5 29 284-312 23-51 (62)
491 PF10952 DUF2753: Protein of u 51.0 85 0.0018 22.1 8.1 81 183-284 4-88 (140)
492 COG5536 BET4 Protein prenyltra 49.7 1.5E+02 0.0032 24.4 17.8 153 61-213 49-226 (328)
493 PF08311 Mad3_BUB1_I: Mad3/BUB 48.9 92 0.002 21.9 13.2 112 94-207 1-126 (126)
494 KOG4151|consensus 47.2 66 0.0014 30.3 6.2 101 50-150 59-165 (748)
495 KOG0292|consensus 46.3 1.5E+02 0.0032 28.9 8.2 32 76-107 670-701 (1202)
496 cd02679 MIT_spastin MIT: domai 44.9 49 0.0011 21.0 3.7 27 252-278 10-36 (79)
497 smart00745 MIT Microtubule Int 44.6 77 0.0017 19.7 8.2 37 35-76 11-47 (77)
498 PF12583 TPPII_N: Tripeptidyl 43.3 85 0.0018 22.3 4.9 32 89-120 87-118 (139)
499 cd00280 TRFH Telomeric Repeat 43.3 1.5E+02 0.0032 22.7 8.5 36 85-121 118-153 (200)
500 KOG4521|consensus 42.5 3.9E+02 0.0084 27.2 14.3 74 120-197 991-1071(1480)
No 1
>KOG4626|consensus
Probab=100.00 E-value=8.6e-37 Score=253.00 Aligned_cols=290 Identities=18% Similarity=0.158 Sum_probs=259.7
Q ss_pred HHHHhHHHHhhccHHHHHHHHHHHHH----------------------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC
Q psy3701 35 LLLKGRVYEALENRALAADCYKGALL----------------------ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG 92 (342)
Q Consensus 35 ~~~~g~~~~~~~~~~~A~~~~~~~~~----------------------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 92 (342)
...+|...-..|+.++|..+|.+++. ..++..|+++++.+|+.+++|+++|.+|...+
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 33578888888888888888888772 56778888889999999999999999999999
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHH
Q psy3701 93 RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLA 172 (342)
Q Consensus 93 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 172 (342)
.+++|+.+|.+|+.+.|++..++.++|.+|..+|..+-|+..|++++++.|..+.++.++|..+...|+..+|..+|.++
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhh------hHHHHHHHhch-hcc
Q psy3701 173 LSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH------KAEDKVKQLGG-EII 245 (342)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~ 245 (342)
+.+.|..+++.+++|.++.++|.+++|...|.++++..|... ...++++. .+.+++..+.. ..+
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a---------aa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA---------AAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh---------hhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999874 33344443 23355555554 678
Q ss_pred CCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701 246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS 325 (342)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 325 (342)
.|..++++.++|+.|..+|+.+.|+..|.+++..+|...+++.++|.+|...|+..+|+..|+.++.+.||.++++.++.
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhh
Q psy3701 326 YVIEQLIE 333 (342)
Q Consensus 326 ~~~~~~~~ 333 (342)
.+++-..+
T Consensus 498 h~lq~vcd 505 (966)
T KOG4626|consen 498 HCLQIVCD 505 (966)
T ss_pred HHHHHHhc
Confidence 88765543
No 2
>KOG4626|consensus
Probab=100.00 E-value=2.9e-37 Score=255.79 Aligned_cols=262 Identities=19% Similarity=0.256 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhc
Q psy3701 61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFN 140 (342)
Q Consensus 61 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 140 (342)
.+|...|.+++..+|..+.+|.++|.++...|+...|+..|++|+.++|...++|++||.+|...+.+++|+.+|.+++.
T Consensus 201 ~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 201 EEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred chhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 67788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701 141 LFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD 220 (342)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 220 (342)
+.|.+..++-++|.+|..+|..+-|+..|+++++..|..++++.++|..+-..|+..+|+.+|.+++.+.|...
T Consensus 281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha------ 354 (966)
T KOG4626|consen 281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA------ 354 (966)
T ss_pred cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred chhhHHHHhhhhHH------HHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q psy3701 221 KWEPLLNNLGHKAE------DKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI 293 (342)
Q Consensus 221 ~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 293 (342)
.++++++.... .+...+.. ....|..+.++.++|.+|.++|++++|+.+|++++++.|...+++.++|..
T Consensus 355 ---dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 355 ---DAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNT 431 (966)
T ss_pred ---HHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence 67777776544 33333333 567788889999999999999999999999999999999999999999999
Q ss_pred HHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701 294 QALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331 (342)
Q Consensus 294 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 331 (342)
|..+|+...|+.+|.+++.++|...+++.+|+.+++..
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs 469 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS 469 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc
Confidence 99999999999999999999999999999998776543
No 3
>KOG1126|consensus
Probab=100.00 E-value=2.2e-32 Score=228.95 Aligned_cols=251 Identities=22% Similarity=0.240 Sum_probs=240.5
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHH----------------------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q psy3701 33 ALLLLKGRVYEALENRALAADCYKGALL----------------------ADLFKLAHELVDLYPDSAIAWYAVGCYYYL 90 (342)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~----------------------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 90 (342)
.++..+|+.|+.+++|++|..+|+.... -+.-.+++.++..+|+.|++|..+|.||..
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 5666799999999999999999998762 355678889999999999999999999999
Q ss_pred hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHH
Q psy3701 91 IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFD 170 (342)
Q Consensus 91 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 170 (342)
+++++.|+++|++|++++|.+..+|..+|.-+....++|.|..+|++++..+|.+..+|+.+|.+|.++++++.|+-.|+
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCCh
Q psy3701 171 LALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWE 250 (342)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (342)
+|++++|.+..+...+|.++.+.|+.++|+.++++|+.++|.++
T Consensus 514 kA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~------------------------------------ 557 (638)
T KOG1126|consen 514 KAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP------------------------------------ 557 (638)
T ss_pred hhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc------------------------------------
Confidence 99999999999999999999999999999999999999999994
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF 319 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 319 (342)
...+..|.++..++++++|+..+++.-++.|+...+++.+|.+|.++|+.+.|+..|.-|.+++|.-..
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 788999999999999999999999999999999999999999999999999999999999999997665
No 4
>KOG1173|consensus
Probab=100.00 E-value=4.7e-30 Score=210.99 Aligned_cols=270 Identities=50% Similarity=0.806 Sum_probs=249.2
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q psy3701 33 ALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYYYL 90 (342)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 90 (342)
.+...+++.++..++|.+..++....+ ..+.+.+.+++++..|+.+..|+..|..|..
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHH
Confidence 444557788888888888888777655 2677888899999999999999999999999
Q ss_pred hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHH
Q psy3701 91 IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFD 170 (342)
Q Consensus 91 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 170 (342)
.|++++|+++|.|+..++|....+|...|.++...|+.++|+.+|..|-++.|+.....+.+|.-|.+++++.-|.+.|.
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCCh
Q psy3701 171 LALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWE 250 (342)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (342)
+++.+.|.+|.+...+|.+.+..+.|.+|..+|+.++..-+... ...+.|.
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~-----------------------------~e~~~w~ 455 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL-----------------------------NEKIFWE 455 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc-----------------------------ccccchh
Confidence 99999999999999999999999999999999999996655542 1122457
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
..+.++|.++.+++++++|+..+++++.+.|.++.++..+|.+|..+|+++.|+++|.+++.+.|++..+...|+.+++.
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred h
Q psy3701 331 L 331 (342)
Q Consensus 331 ~ 331 (342)
.
T Consensus 536 ~ 536 (611)
T KOG1173|consen 536 S 536 (611)
T ss_pred h
Confidence 3
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.98 E-value=2.6e-29 Score=226.34 Aligned_cols=283 Identities=12% Similarity=0.084 Sum_probs=165.0
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF 111 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 111 (342)
+..+..+|..++..|+|++|+..|+++ +...|+ +..+.++|.+|..+|++++|+..++++++++|++
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~a------------l~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~ 193 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKA------------IECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY 193 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------------HhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC
Confidence 455677999999999999999999996 466774 6677888888888888888888888888888888
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHHhccCC------------------------------CCchHHHHHHH-------
Q psy3701 112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK------------------------------GCHLPALYVGL------- 154 (342)
Q Consensus 112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------------------~~~~~~~~l~~------- 154 (342)
..++..+|.++..+|++++|+..+..+...++ .+...+..++.
T Consensus 194 ~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 273 (615)
T TIGR00990 194 SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRP 273 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccC
Confidence 88888888888888888777765544332211 11101111111
Q ss_pred --------------------------HH---hhhCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHHHhcChhHHHHH
Q psy3701 155 --------------------------EC---GLTNNARLASKFFDLALSI---AHEDPFVIHEMGVIAYQNHNYTVAENC 202 (342)
Q Consensus 155 --------------------------~~---~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~ 202 (342)
.. ...+++++|++.|++++.. .|....++..+|.++..+|++++|+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 274 KPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred CcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00 0113455555555555543 244445555555555555555555555
Q ss_pred HHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Q psy3701 203 FMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281 (342)
Q Consensus 203 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 281 (342)
++++++++|....... ....++...++ ..++...+.. ....|..+.+++.+|.++...|++++|+..|+++++++|
T Consensus 354 ~~kal~l~P~~~~~~~--~la~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P 430 (615)
T TIGR00990 354 LSKSIELDPRVTQSYI--KRASMNLELGD-PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430 (615)
T ss_pred HHHHHHcCCCcHHHHH--HHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 5555555554420000 00011111111 1222222222 223444455666666666666666666666666666666
Q ss_pred CchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 282 MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 282 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
++...+..+|.++..+|++++|+..|++++...|+++.++..++.++..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD 479 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666555555543
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=4.4e-29 Score=224.81 Aligned_cols=247 Identities=17% Similarity=0.155 Sum_probs=213.5
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
....+..+|.++...|++++|+..|+++ +..+|....+|..+|.++...|++++|+..|+++++.+|+
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~ka------------l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 397 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKS------------IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE 397 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4456777888888889999999888886 5889999999999999999999999999999999999999
Q ss_pred cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701 111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA 190 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 190 (342)
++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..+++++...|+++.++..+|.++
T Consensus 398 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~ 477 (615)
T TIGR00990 398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELL 477 (615)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH-HHHHHhhhHHHH
Q psy3701 191 YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG-HVNRKLKKYEEA 269 (342)
Q Consensus 191 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A 269 (342)
...|++++|+..|++++.+.|.... .... ...+...+ ..+...|++++|
T Consensus 478 ~~~g~~~~A~~~~~~Al~l~p~~~~-----------------------------~~~~-~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 478 LDQNKFDEAIEKFDTAIELEKETKP-----------------------------MYMN-VLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHccCHHHHHHHHHHHHhcCCcccc-----------------------------cccc-HHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999999998886520 0000 11222333 334457999999
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701 270 LEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF 319 (342)
Q Consensus 270 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 319 (342)
+..++++++++|++..++..+|.++...|++++|+.+|++++++.+....
T Consensus 528 ~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 528 ENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999999999999999999886554
No 7
>KOG1126|consensus
Probab=99.97 E-value=6e-30 Score=214.41 Aligned_cols=255 Identities=20% Similarity=0.229 Sum_probs=231.3
Q ss_pred HHHHHHHhHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc--
Q psy3701 32 SALLLLKGRVYEAL--ENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL-- 107 (342)
Q Consensus 32 ~~~~~~~g~~~~~~--~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 107 (342)
..++..+|..+... -+..+|+..|.+ +-...++...++..+|..|+++++|++|..+|+.+-+.
T Consensus 317 ~~llr~~~~~~~~~s~y~~~~A~~~~~k------------lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p 384 (638)
T KOG1126|consen 317 MELLRGLGEGYRSLSQYNCREALNLFEK------------LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEP 384 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444555555543 334566666666 35677888899999999999999999999999987433
Q ss_pred --------------------------------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701 108 --------------------------------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE 155 (342)
Q Consensus 108 --------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 155 (342)
+|+.|+.|..+|++|..+++++.|+++|+++++++|....++..+|.-
T Consensus 385 ~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE 464 (638)
T KOG1126|consen 385 YRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHE 464 (638)
T ss_pred ccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCCh
Confidence 567788899999999999999999999999999999999999999999
Q ss_pred HhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701 156 CGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED 235 (342)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (342)
+.....++.|..+|+.++..+|++..+|+.+|.+|.++++++.|.-.|++|++++|.+
T Consensus 465 ~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n---------------------- 522 (638)
T KOG1126|consen 465 SIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN---------------------- 522 (638)
T ss_pred hhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc----------------------
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701 236 KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR 315 (342)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 315 (342)
......+|.++.+.|+.++|+.+|++|+.++|.++-..+..|.++..++++++|...+++.-++.|
T Consensus 523 --------------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 523 --------------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred --------------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence 478889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHhHHHHHHHHhhhc
Q psy3701 316 DDSFATTMLSYVIEQLIEE 334 (342)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~ 334 (342)
++..++..+++++.+++..
T Consensus 589 ~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 589 QESSVFALLGKIYKRLGNT 607 (638)
T ss_pred chHHHHHHHHHHHHHHccc
Confidence 9999999999999988653
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=7.8e-28 Score=216.27 Aligned_cols=308 Identities=12% Similarity=0.005 Sum_probs=176.0
Q ss_pred hhhhhhcccchhhhhhhhh-hhhHHH-----HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Q psy3701 7 SLQELLGGEGVSFFCWFSQ-LQSEMK-----SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIA 80 (342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 80 (342)
+..+++..+.....|.|.+ .++... ..-...........|++.+|...++.. +...|+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~------------l~~~p~~~~~ 78 (656)
T PRK15174 11 SPTTLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDR------------VLTAKNGRDL 78 (656)
T ss_pred CchhhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHH------------HHhCCCchhH
Confidence 4466777777777887652 222111 112223445566667777777777764 5667777777
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC
Q psy3701 81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN 160 (342)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 160 (342)
++.+|.+....|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|++..++..++.++...|
T Consensus 79 l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g 158 (656)
T PRK15174 79 LRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD 158 (656)
T ss_pred HHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 77777777777777777777777777777777777777777777777777777777777777776666667777777777
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHh
Q psy3701 161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240 (342)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (342)
++++|+..+++++...|+++..+..++ .+...|++++|+..++++++..|...... .......+...++..+ +...+
T Consensus 159 ~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~-~~~l~~~l~~~g~~~e-A~~~~ 235 (656)
T PRK15174 159 KELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQES-AGLAVDTLCAVGKYQE-AIQTG 235 (656)
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhH-HHHHHHHHHHCCCHHH-HHHHH
Confidence 777777777766666666666555443 35566666666666666665544221000 0000011112222221 22222
Q ss_pred ch-hccCCCChHHHHHHHHHHHHhhhHHH----HHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701 241 GG-EIIADKWEPLLNNLGHVNRKLKKYEE----ALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR 315 (342)
Q Consensus 241 ~~-~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 315 (342)
.. ....|....++..+|.++...|++++ |+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|
T Consensus 236 ~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P 315 (656)
T PRK15174 236 ESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP 315 (656)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 22 22334444555555555555555553 45555555555555555555555555555555555555555555555
Q ss_pred CchhHHhHHHHHHH
Q psy3701 316 DDSFATTMLSYVIE 329 (342)
Q Consensus 316 ~~~~~~~~l~~~~~ 329 (342)
+++.++..++.++.
T Consensus 316 ~~~~a~~~La~~l~ 329 (656)
T PRK15174 316 DLPYVRAMYARALR 329 (656)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554443
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=9.4e-28 Score=215.74 Aligned_cols=285 Identities=9% Similarity=-0.118 Sum_probs=202.0
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
....++.+|.+....|++++|+..|++. +..+|+++.++..+|.++...|++++|+..+++++.++|+
T Consensus 75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~------------l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~ 142 (656)
T PRK15174 75 GRDLLRRWVISPLASSQPDAVLQVVNKL------------LAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG 142 (656)
T ss_pred chhHHHHHhhhHhhcCCHHHHHHHHHHH------------HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3556778888888999999999999995 5888888888888888888888888888888888888888
Q ss_pred cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHH
Q psy3701 111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHE-DPFVIHEMGVI 189 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 189 (342)
++.++..++.++...|++++|+..+++++...|+++..+..++ .+...|++++|+..+++++...|. +......++.+
T Consensus 143 ~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 143 NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 8888888888888888888888888888888887776665543 366677777777777777766542 33334455666
Q ss_pred HHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH---HHHHHhch-hccCCCChHHHHHHHHHHHHhhh
Q psy3701 190 AYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE---DKVKQLGG-EIIADKWEPLLNNLGHVNRKLKK 265 (342)
Q Consensus 190 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~ 265 (342)
+...|++++|+..+++++...|+++.. ......++...|+..+ .+...+.. ....|....++..+|.++...|+
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~~~~~--~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLDGAAL--RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence 777777777777777777776665300 0011122222333322 23333333 33455666777777777777777
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 266 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
+++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|++......++.++..
T Consensus 300 ~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 300 NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ 364 (656)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777766555545544433
No 10
>KOG1155|consensus
Probab=99.96 E-value=8.7e-27 Score=187.57 Aligned_cols=260 Identities=15% Similarity=0.166 Sum_probs=234.8
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHH----------------------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCh
Q psy3701 37 LKGRVYEALENRALAADCYKGALL----------------------ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94 (342)
Q Consensus 37 ~~g~~~~~~~~~~~A~~~~~~~~~----------------------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 94 (342)
..|.+.....++++|+..|+.... .+...+++.+...+.-.+++...+|..|...++.
T Consensus 267 ~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 267 QIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhH
Confidence 466777888889999888887651 3445566666677777778888889999999999
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701 95 DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALS 174 (342)
Q Consensus 95 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 174 (342)
++|+.+|++|++++|....+|..+|+-|..+.+...|+..|++|++++|.+..+|+.+|..|..++...-|+-+|++++.
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~ 426 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE 426 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHH
Q psy3701 175 IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN 254 (342)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (342)
..|.++..|..+|.||.+.++.++|+++|.+++...... ..++.
T Consensus 427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte------------------------------------~~~l~ 470 (559)
T KOG1155|consen 427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE------------------------------------GSALV 470 (559)
T ss_pred cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc------------------------------------hHHHH
Confidence 999999999999999999999999999999999988776 47999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHh-------hCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701 255 NLGHVNRKLKKYEEALEFHKQALV-------VAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327 (342)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~al~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 327 (342)
.+|.+|.++++.++|..+|++.++ ..|....+...|+.-+.+.+++++|..+..+++.-++.-.++...+..+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlRei 550 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREI 550 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 999999999999999999999998 3455667777899999999999999999999999988888888888888
Q ss_pred HHHhh
Q psy3701 328 IEQLI 332 (342)
Q Consensus 328 ~~~~~ 332 (342)
.....
T Consensus 551 r~~~~ 555 (559)
T KOG1155|consen 551 RKIQA 555 (559)
T ss_pred HHhcC
Confidence 76654
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.8e-26 Score=220.69 Aligned_cols=267 Identities=14% Similarity=0.037 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHhcCCCcHH--------------HHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc
Q psy3701 61 ADLFKLAHELVDLYPDSAI--------------AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN 126 (342)
Q Consensus 61 ~~a~~~~~~~~~~~p~~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 126 (342)
++|+..++++++.+|++.. ....+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 320 ~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g 399 (1157)
T PRK11447 320 ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK 399 (1157)
T ss_pred HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 4444455555677776532 12345778888899999999999999999988888888999999999
Q ss_pred cHHHHHHHHHHHhccCCCCchHHHHHH------------------------------------------HHHhhhCCHHH
Q psy3701 127 EHDQAMAAYFNAFNLFKGCHLPALYVG------------------------------------------LECGLTNNARL 164 (342)
Q Consensus 127 ~~~~A~~~~~~al~~~~~~~~~~~~l~------------------------------------------~~~~~~~~~~~ 164 (342)
++++|++.|+++++.+|.+..++..++ ..+...|++++
T Consensus 400 ~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~e 479 (1157)
T PRK11447 400 DYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQ 479 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHH
Confidence 999999999999988888776654443 33446789999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchh--------hHHHHhhh-----
Q psy3701 165 ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE--------PLLNNLGH----- 231 (342)
Q Consensus 165 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------~~~~~~~~----- 231 (342)
|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..|.++......... .+...+..
T Consensus 480 A~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~ 559 (1157)
T PRK11447 480 AAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ 559 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh
Confidence 99999999999999999999999999999999999999999999888775222111000 00000000
Q ss_pred ----------------------------hHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Q psy3701 232 ----------------------------KAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 283 (342)
Q Consensus 232 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 283 (342)
..+++...+. ..|..+..+..+|.++...|++++|+..|+++++.+|++
T Consensus 560 ~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~ 636 (1157)
T PRK11447 560 WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR---QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN 636 (1157)
T ss_pred cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 0011112221 355666788999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 284 ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
+.++..++.++...|++++|+..++++++..|+++.++..++.++..
T Consensus 637 ~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 637 ADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988888877654
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=4.2e-26 Score=216.09 Aligned_cols=295 Identities=20% Similarity=0.205 Sum_probs=190.1
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q psy3701 33 ALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYYYL 90 (342)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 90 (342)
.++..++.++...|++++|+..+.++. +++|...+++++...|.++.+|..+|.++..
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344556666666777777776666552 3566677777777777777788888888888
Q ss_pred hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHH
Q psy3701 91 IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFD 170 (342)
Q Consensus 91 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 170 (342)
.|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++..|++..++..++.++...|++++|+..++
T Consensus 614 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888888887787777788888888888888888888888888877777777777777777777777777777
Q ss_pred HHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH----------------
Q psy3701 171 LALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE---------------- 234 (342)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 234 (342)
.+....|.++..+..+|.++...|++++|+..|++++...|++. ........+...|+..+
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 770 (899)
T TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ---NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDA 770 (899)
T ss_pred HHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 77777777777777788888888888888888888877776552 00011111111221111
Q ss_pred -----------------HHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH
Q psy3701 235 -----------------DKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL 296 (342)
Q Consensus 235 -----------------~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 296 (342)
++...+.. ....|..+.++..+|.++...|+ .+|+..+++++...|+++..+..+|.++..
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 12222222 12233344444555555555555 445555555555555555555555666666
Q ss_pred hCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701 297 TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331 (342)
Q Consensus 297 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 331 (342)
.|++++|+.+|+++++.+|.++.++..++.++...
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLAT 884 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Confidence 66666666666666666666666666666655544
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=3.1e-26 Score=216.96 Aligned_cols=276 Identities=16% Similarity=0.143 Sum_probs=216.0
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYYY 89 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 89 (342)
...+..+|.++...|++++|+..|++++ +++|...+++++..+|++..++..++.++.
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3456667777777777777777776653 255666666666666666666666666666
Q ss_pred HhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHH
Q psy3701 90 LIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFF 169 (342)
Q Consensus 90 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 169 (342)
..|++++|+..++++....|.++..+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|++.+
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666666666666677777788888888888888888888888888876 66777888888899999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCC
Q psy3701 170 DLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADK 248 (342)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 248 (342)
+++++..|+++.++..+|.++...|++++|+..|+++++..|+++...... ...+...++ .+++..+.. ....|.
T Consensus 760 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l--~~~~~~~~~--~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 760 EAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL--AWLYLELKD--PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHhcCc--HHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999999999988774211111 122233333 334555444 345666
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701 249 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312 (342)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 312 (342)
.+..+..+|.++...|++++|+.+++++++.+|.++.++..++.++...|++++|+..++++++
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 7788999999999999999999999999999999999999999999999999999999999863
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=5.8e-26 Score=217.16 Aligned_cols=280 Identities=15% Similarity=0.050 Sum_probs=218.2
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH--
Q psy3701 37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA-- 114 (342)
Q Consensus 37 ~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-- 114 (342)
.+|..+...|++++|+..|+++ +..+|+++.++..+|.++...|++++|+.+|+++++.+|++...
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~a------------L~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQA------------VRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence 3477788888888888888885 58899999999999999999999999999999999999986431
Q ss_pred ------------HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHH
Q psy3701 115 ------------WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV 182 (342)
Q Consensus 115 ------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 182 (342)
...+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|++.|+++++.+|++..+
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a 421 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA 421 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 23458889999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHHHH------------------------------------------HHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701 183 IHEMGVI------------------------------------------AYQNHNYTVAENCFMEALSKVKQLGGEIIAD 220 (342)
Q Consensus 183 ~~~l~~~------------------------------------------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 220 (342)
+..++.+ +...|++++|+..|+++++.+|+++. ...
T Consensus 422 ~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~--~~~ 499 (1157)
T PRK11447 422 VRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW--LTY 499 (1157)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHH
Confidence 6655544 44568888888888888888887741 011
Q ss_pred chhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHH-----------------------
Q psy3701 221 KWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA----------------------- 276 (342)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------------------- 276 (342)
....++...++ .+++...++. ....|..+..++.++..+...|++++|+..++++
T Consensus 500 ~LA~~~~~~G~-~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQ-RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 11122222332 2233333333 3345556666666666666666666665554432
Q ss_pred -----------------HhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701 277 -----------------LVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331 (342)
Q Consensus 277 -----------------l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 331 (342)
++..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 2246777778889999999999999999999999999999999999999887554
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=3e-25 Score=190.47 Aligned_cols=281 Identities=15% Similarity=0.072 Sum_probs=209.8
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF 111 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 111 (342)
....+.+|..+...|++++|+..|+++ +..+|+++.++..+|.++...|++++|+..+++++...+..
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~a------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 102 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEM------------LKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT 102 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHH------------HhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC
Confidence 344556788888888888888888885 47788888888888888888888888888888887753322
Q ss_pred ----HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChH-----H
Q psy3701 112 ----LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPF-----V 182 (342)
Q Consensus 112 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~ 182 (342)
..++..+|.++...|++++|+..|+++++..|.+..++..++.++...|++++|++.++++++..|.+.. .
T Consensus 103 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 103 REQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHF 182 (389)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 2457788888888888888888888888888877778888888888888888888888888887766532 4
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhc-cCCC-ChHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI-IADK-WEPLLNNLGHVN 260 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~l~~~~ 260 (342)
+..+|.++...|++++|+..++++++..|..... .......+...++ ..++...+.... ..+. ...++..++.++
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRA--SILLGDLALAQGD-YAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH--HHHHHHHHHHCCC-HHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 5677888888888888888888888877765210 0011112222222 223333333322 1222 245678899999
Q ss_pred HHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701 261 RKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI 328 (342)
Q Consensus 261 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 328 (342)
...|++++|+..++++++..|+... ...++.++.+.|++++|+..++++++..|++......+...+
T Consensus 260 ~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 9999999999999999999997754 488999999999999999999999999999887665554433
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.3e-25 Score=206.61 Aligned_cols=248 Identities=15% Similarity=0.049 Sum_probs=214.0
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
...+++.+|.++.. ++..+|+..|.++ +...|++. ....+|..+...|++++|+..|++++...|.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~A------------l~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~ 541 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQA------------EQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS 541 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHH------------HHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 56788889999987 8888999988886 46677654 3666677778999999999999998777665
Q ss_pred cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701 111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA 190 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 190 (342)
+ ..+..+|.++...|++++|+.+++++++..|........++......|++++|+..++++++.+|+ +..+..+|.++
T Consensus 542 ~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l 619 (987)
T PRK09782 542 N-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIY 619 (987)
T ss_pred c-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 4 557888999999999999999999999999887766666666666779999999999999999996 88999999999
Q ss_pred HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHH
Q psy3701 191 YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEAL 270 (342)
Q Consensus 191 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 270 (342)
.+.|++++|+..|++++..+|++ +.++.++|.++...|++++|+
T Consensus 620 ~~lG~~deA~~~l~~AL~l~Pd~------------------------------------~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALELEPNN------------------------------------SNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999998 588999999999999999999
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 271 EFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 271 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
..|+++++.+|+++.++.++|.++...|++++|+.+|+++++++|++..+....+.+...
T Consensus 664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ 723 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence 999999999999999999999999999999999999999999999988777766665543
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=3.4e-25 Score=203.88 Aligned_cols=256 Identities=10% Similarity=-0.004 Sum_probs=231.0
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHH
Q psy3701 34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLP 113 (342)
Q Consensus 34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 113 (342)
....+|..+...|++++|+..|+++ ....|. ...++.+|.++...|++++|+.+++++++.+|.+..
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka------------~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~ 577 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKI------------SLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNA 577 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH------------hccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHH
Confidence 3555777778999999999999985 344444 456889999999999999999999999999999988
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q psy3701 114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN 193 (342)
Q Consensus 114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (342)
.+..++......|++++|+..++++++.+|+ ..++..+|.++.+.|++++|+..+++++..+|+++.++..+|.++...
T Consensus 578 l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 578 LYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 8877777777889999999999999999997 889999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q psy3701 194 HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFH 273 (342)
Q Consensus 194 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 273 (342)
|++++|+..|+++++..|++ +.++.++|.++...|++++|+..|
T Consensus 657 G~~eeAi~~l~~AL~l~P~~------------------------------------~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 657 GDIAQSREMLERAHKGLPDD------------------------------------PALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999998 589999999999999999999999
Q ss_pred HHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcCCCCCC
Q psy3701 274 KQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPG 340 (342)
Q Consensus 274 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 340 (342)
+++++..|++..+....|.+.....+++.|.+.+++...++|+.. +....+.++-...+-.++.+|
T Consensus 701 ~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~~~~~~~ 766 (987)
T PRK09782 701 RLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNVGGAAPG 766 (987)
T ss_pred HHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhcccccCCCCC
Confidence 999999999999999999999999999999999999999999888 777777766655554444443
No 18
>KOG0547|consensus
Probab=99.95 E-value=2.6e-25 Score=180.26 Aligned_cols=246 Identities=16% Similarity=0.132 Sum_probs=219.7
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF 111 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 111 (342)
+..+...|-.++-.|+.-.|...|+++ +..+|.+...|..+|.+|...++.++....|.+|..++|.+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~------------I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n 393 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAA------------IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN 393 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHH------------HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC
Confidence 566777888889999999999999985 69999999889999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701 112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY 191 (342)
Q Consensus 112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (342)
+++|+..|.+++-.+++++|+.-|++++.++|++..++..++...+++++++++...|+.+.+..|+.++++...|.++.
T Consensus 394 ~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 394 PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT 473 (606)
T ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH-HHHhhhHHHHH
Q psy3701 192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV-NRKLKKYEEAL 270 (342)
Q Consensus 192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~ 270 (342)
.++++++|++.|.+++++.|..... .. .+..+..-|.+ +...+++..|+
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~~~~~----------------------------~v--~~~plV~Ka~l~~qwk~d~~~a~ 523 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPREHLI----------------------------IV--NAAPLVHKALLVLQWKEDINQAE 523 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccccccc----------------------------cc--cchhhhhhhHhhhchhhhHHHHH
Confidence 9999999999999999999984200 00 01222223322 22459999999
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701 271 EFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF 319 (342)
Q Consensus 271 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 319 (342)
..++++++++|....++..||.+..++|+.++|+++|+++..+.....+
T Consensus 524 ~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E 572 (606)
T KOG0547|consen 524 NLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESE 572 (606)
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999999999999999887655443
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=1.9e-24 Score=185.45 Aligned_cols=249 Identities=13% Similarity=0.043 Sum_probs=204.8
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC----chHHHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC----HLPALYV 152 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l 152 (342)
.....+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ...+..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 345667779999999999999999999999999999999999999999999999999999999854332 2456778
Q ss_pred HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh--
Q psy3701 153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG-- 230 (342)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-- 230 (342)
|.++...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+... .....+..++
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~~la~~ 189 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV----EIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988765311 0111111222
Q ss_pred ----hhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHHhCChHHHH
Q psy3701 231 ----HKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-ASTFCCIGYIQALTGDLDSAV 304 (342)
Q Consensus 231 ----~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 304 (342)
....++...+.. ....|....++..+|.++...|++++|+..++++++.+|.+ ..++..++.++...|++++|+
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 223344444444 33456667889999999999999999999999999998876 466788999999999999999
Q ss_pred HHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 305 NYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 305 ~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
..++++++..|+.... ..++.++..
T Consensus 270 ~~l~~~~~~~p~~~~~-~~la~~~~~ 294 (389)
T PRK11788 270 EFLRRALEEYPGADLL-LALAQLLEE 294 (389)
T ss_pred HHHHHHHHhCCCchHH-HHHHHHHHH
Confidence 9999999999987554 666666544
No 20
>KOG1155|consensus
Probab=99.95 E-value=3.7e-24 Score=172.52 Aligned_cols=268 Identities=17% Similarity=0.114 Sum_probs=139.8
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHH---------HHH------HHHHHHHHhcCC--CcHHHHHHHHHHHHHh
Q psy3701 29 EMKSALLLLKGRVYEALENRALAADCYKGALL---------ADL------FKLAHELVDLYP--DSAIAWYAVGCYYYLI 91 (342)
Q Consensus 29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~---------~~a------~~~~~~~~~~~p--~~~~~~~~l~~~~~~~ 91 (342)
..+.-.+|+.|.++...|....|++.|..... .+. +.....++..-| .+...-+-++.++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 34567788899999999999999999988762 000 001111111111 1111222233333334
Q ss_pred CChHHHHHHHHHHhhc-CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC-------------------------
Q psy3701 92 GRSDPARRFLGKATSL-DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC------------------------- 145 (342)
Q Consensus 92 ~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------------------- 145 (342)
.+.++++.-++..... .|.+...-...|.+.....++++|+..|+...+.+|-.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 4444444444444444 44444444444555555555555555555555444421
Q ss_pred ---------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcc
Q psy3701 146 ---------HLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGE 216 (342)
Q Consensus 146 ---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 216 (342)
++....+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+..|++|++++|.+
T Consensus 321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D--- 397 (559)
T KOG1155|consen 321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD--- 397 (559)
T ss_pred HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh---
Confidence 11111223344444555555555555555555555555555555555555555555555555555555
Q ss_pred ccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH
Q psy3701 217 IIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL 296 (342)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 296 (342)
..+|+.+|.+|.-++...=|+-+|++|.+..|+++..|..+|.||.+
T Consensus 398 ---------------------------------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k 444 (559)
T KOG1155|consen 398 ---------------------------------YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK 444 (559)
T ss_pred ---------------------------------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 35555555555555555555555555555555555555555555555
Q ss_pred hCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 297 TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 297 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
+++.++|+.+|.+++.....+..++..|+.+++++.
T Consensus 445 l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 445 LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555444
No 21
>KOG0547|consensus
Probab=99.95 E-value=6.7e-25 Score=177.89 Aligned_cols=269 Identities=16% Similarity=0.085 Sum_probs=193.1
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
.+..+-.+|+-++..|+|++||++|.++ +...|+.+..+.+++-||...|+|++.++...++++++|+
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~A------------I~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~ 181 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQA------------IELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD 181 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHH------------HhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH
Confidence 3455556999999999999999999997 5888888889999999999999999999999999999999
Q ss_pred cHHHHHHhhhHHHhhccHHHHHHHHH------------------HHhcc-------------------------------
Q psy3701 111 FLPAWLMYGHSFAVENEHDQAMAAYF------------------NAFNL------------------------------- 141 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g~~~~A~~~~~------------------~al~~------------------------------- 141 (342)
...+++..+.++...|++++|+.... +.+..
T Consensus 182 Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 182 YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 88888888888888888777765322 11111
Q ss_pred --------------------------------------------------C-CCC---------chHHHHHHHHHhhhCC
Q psy3701 142 --------------------------------------------------F-KGC---------HLPALYVGLECGLTNN 161 (342)
Q Consensus 142 --------------------------------------------------~-~~~---------~~~~~~l~~~~~~~~~ 161 (342)
. ..+ ..++...|..+...|+
T Consensus 262 ~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 262 HADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred cccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 0 001 2334445566666677
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchh--hHHHHhhhhHHHHHHH
Q psy3701 162 ARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE--PLLNNLGHKAEDKVKQ 239 (342)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 239 (342)
.-.|.+.|++++.++|.++..+..+|.+|...++.++-...|.++..++|.++ ...+. ...+.++ ..+++...
T Consensus 342 ~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~----dvYyHRgQm~flL~-q~e~A~aD 416 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP----DVYYHRGQMRFLLQ-QYEEAIAD 416 (606)
T ss_pred chhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC----chhHhHHHHHHHHH-HHHHHHHH
Confidence 77777777777776666666666666666666666666677777776666664 11111 1111122 22223333
Q ss_pred hch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701 240 LGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316 (342)
Q Consensus 240 ~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 316 (342)
+++ ....|..+-.+..++.+.+++++++++...|+.+.+..|+.++++...|.++..++++++|++.|.+++++.|.
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 333 34455557788888888888888888888888888888888888888888888888888888888888888887
No 22
>PRK12370 invasion protein regulator; Provisional
Probab=99.94 E-value=1.4e-24 Score=192.34 Aligned_cols=213 Identities=16% Similarity=0.011 Sum_probs=189.7
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC---------ChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHH
Q psy3701 62 DLFKLAHELVDLYPDSAIAWYAVGCYYYLIG---------RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAM 132 (342)
Q Consensus 62 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 132 (342)
+|+..++++++.+|+++.++..+|.++...+ ++++|+..++++++++|+++.++..+|.++...|++++|+
T Consensus 279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~ 358 (553)
T PRK12370 279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGS 358 (553)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Confidence 3444444467999999999999999887543 4789999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhh-h
Q psy3701 133 AAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKV-K 211 (342)
Q Consensus 133 ~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~ 211 (342)
..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|++++|+..+++++... |
T Consensus 359 ~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p 438 (553)
T PRK12370 359 LLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQ 438 (553)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999998887777878888999999999999999876 4
Q ss_pred hcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3701 212 QLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIG 291 (342)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 291 (342)
.. +..+..+|.++...|++++|+..+++.....|.....+..++
T Consensus 439 ~~------------------------------------~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~ 482 (553)
T PRK12370 439 DN------------------------------------PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLY 482 (553)
T ss_pred cC------------------------------------HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 44 578899999999999999999999999888898888999999
Q ss_pred HHHHHhCChHHHHHHHHHHHh
Q psy3701 292 YIQALTGDLDSAVNYFHKTMA 312 (342)
Q Consensus 292 ~~~~~~g~~~~A~~~~~~al~ 312 (342)
..+...|+ .|...+++.++
T Consensus 483 ~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 483 AEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHhccHH--HHHHHHHHHHH
Confidence 99998885 66666666554
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.94 E-value=6.9e-26 Score=184.81 Aligned_cols=251 Identities=17% Similarity=0.095 Sum_probs=118.1
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH
Q psy3701 36 LLKGRVYEALENRALAADCYKGALLADLFKLAHELVDL-YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA 114 (342)
Q Consensus 36 ~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 114 (342)
+..+..+...|++++|++.+.+.. ... .|+++..|..+|.+....++++.|+..|++++..++.++..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~-----------~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~ 80 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAA-----------QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 356999999999999999997652 344 58899999999999999999999999999999999999998
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHH
Q psy3701 115 WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIA--HEDPFVIHEMGVIAYQ 192 (342)
Q Consensus 115 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 192 (342)
+..++.+ ...+++++|+..++++.+..+ ++..+.....++...++++++...++++.... +.++.+|..+|.++..
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred ccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 8888888 799999999999999988765 45666777788999999999999999977655 6788999999999999
Q ss_pred hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHH
Q psy3701 193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEF 272 (342)
Q Consensus 193 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 272 (342)
.|++++|+..++++++.+|++ ..+...++.++...|+++++...
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~------------------------------------~~~~~~l~~~li~~~~~~~~~~~ 202 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDD------------------------------------PDARNALAWLLIDMGDYDEAREA 202 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-------------------------------------HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCC------------------------------------HHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999999999999998 47888888889899999988888
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcC
Q psy3701 273 HKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEES 335 (342)
Q Consensus 273 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 335 (342)
++...+..|+++..+..+|.++..+|++++|+.+|++++..+|+|+.....++.++.+.+...
T Consensus 203 l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 203 LKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp HHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------
T ss_pred HHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccc
Confidence 888888878888888889999999999999999999999999999999999988887766543
No 24
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.94 E-value=7.8e-24 Score=172.90 Aligned_cols=233 Identities=17% Similarity=0.109 Sum_probs=183.7
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHh---cCC-CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhh
Q psy3701 45 LENRALAADCYKGALLADLFKLAHELVD---LYP-DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGH 120 (342)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~a~~~~~~~~~---~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 120 (342)
.+..+.++..+.+. +. .+| ..+..|+.+|.++...|++++|+..|+++++++|+++.+|..+|.
T Consensus 39 ~~~~e~~i~~~~~~------------l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 106 (296)
T PRK11189 39 TLQQEVILARLNQI------------LASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGI 106 (296)
T ss_pred chHHHHHHHHHHHH------------HccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556677777774 44 233 347889999999999999999999999999999999999999999
Q ss_pred HHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHH
Q psy3701 121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAE 200 (342)
Q Consensus 121 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 200 (342)
++...|++++|+..|+++++++|++..++..+|.++...|++++|++.++++++.+|+++.... ...+....+++++|+
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~ 185 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAK 185 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999984222 223345678899999
Q ss_pred HHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHH--HHH----HH
Q psy3701 201 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEA--LEF----HK 274 (342)
Q Consensus 201 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~----~~ 274 (342)
..+.+.+...+.. .|. .+.+....|+..++ +.. ++
T Consensus 186 ~~l~~~~~~~~~~--------------------------------------~~~-~~~~~~~lg~~~~~~~~~~~~~~~~ 226 (296)
T PRK11189 186 ENLKQRYEKLDKE--------------------------------------QWG-WNIVEFYLGKISEETLMERLKAGAT 226 (296)
T ss_pred HHHHHHHhhCCcc--------------------------------------ccH-HHHHHHHccCCCHHHHHHHHHhcCC
Confidence 9998876543322 111 24444445554333 222 23
Q ss_pred HHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc-CchhHHhHHHHHHH
Q psy3701 275 QALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR-DDSFATTMLSYVIE 329 (342)
Q Consensus 275 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 329 (342)
...+..|....+|+.+|.++...|++++|+.+|+++++.+| ++.+..+.+..+..
T Consensus 227 ~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 227 DNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELAL 282 (296)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 33456677788999999999999999999999999999997 66666655544443
No 25
>KOG1129|consensus
Probab=99.93 E-value=2.1e-24 Score=166.87 Aligned_cols=246 Identities=17% Similarity=0.207 Sum_probs=229.7
Q ss_pred HHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH
Q psy3701 35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA 114 (342)
Q Consensus 35 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 114 (342)
...+|++|.+.|-+.+|.+.+++++ ...| .++.+..++.+|.+..+...|+..+...++..|.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL------------~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~ 292 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSL------------TQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTY 292 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHh------------hcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhh
Confidence 3459999999999999999999974 5444 68999999999999999999999999999999999999
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc
Q psy3701 115 WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH 194 (342)
Q Consensus 115 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (342)
....++++..+++.++|.++|+.+++.+|.+.++...+|..|+..++.+-|+.+|+++++..-.+++.+.++|.|.+..+
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHH
Q psy3701 195 NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK 274 (342)
Q Consensus 195 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 274 (342)
+++-++..|++++....... ..+++|+++|.+....|++.-|..+|+
T Consensus 373 Q~D~~L~sf~RAlstat~~~---------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPG---------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred chhhhHHHHHHHHhhccCcc---------------------------------hhhhhhhccceeEEeccchHHHHHHHH
Confidence 99999999999998765432 226899999999999999999999999
Q ss_pred HHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701 275 QALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326 (342)
Q Consensus 275 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 326 (342)
-++..++++.+++.++|.+-.+.|+.++|..++..+-...|+-.+..++++.
T Consensus 420 laL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 420 LALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred HHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeE
Confidence 9999999999999999999999999999999999999999998888777654
No 26
>KOG0624|consensus
Probab=99.93 E-value=4.2e-23 Score=160.71 Aligned_cols=311 Identities=16% Similarity=0.098 Sum_probs=220.6
Q ss_pred CCcchhhhhhcccchhhhhhhh-------hhhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3701 3 AHPLSLQELLGGEGVSFFCWFS-------QLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYP 75 (342)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p 75 (342)
+-|+|...-+||.....+..+. ...+..+.+-.+.+|..+...|++..|+..|..+ ++.+|
T Consensus 2 ~~p~s~~~~~g~~~~~~Lvll~~~~e~a~~~~~~advekhlElGk~lla~~Q~sDALt~yHaA------------ve~dp 69 (504)
T KOG0624|consen 2 ALPLSDLLMIGGAACLVLVLLELFLEGAESTASPADVEKHLELGKELLARGQLSDALTHYHAA------------VEGDP 69 (504)
T ss_pred CCchhHHHHhhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------HcCCc
Confidence 4577766666764333222211 3344556777788999999999999999999986 58889
Q ss_pred CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc---------
Q psy3701 76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH--------- 146 (342)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------- 146 (342)
++..+++..|.+|...|+..-|+..+.+.+++.|+...+....|.++..+|++++|...|..++..+|++.
T Consensus 70 ~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl 149 (504)
T KOG0624|consen 70 NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKL 149 (504)
T ss_pred hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 99999999999999999988899999999999998888888888899999999998888888888877422
Q ss_pred ----------------------------------------hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701 147 ----------------------------------------LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM 186 (342)
Q Consensus 147 ----------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 186 (342)
..+...+.+|...|+...|+.-++.+-++..++.+.++.+
T Consensus 150 ~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yki 229 (504)
T KOG0624|consen 150 ALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKI 229 (504)
T ss_pred HhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHH
Confidence 1222234445555555555555555555555566666666
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH------------HHHHHhch-hccCCC----C
Q psy3701 187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE------------DKVKQLGG-EIIADK----W 249 (342)
Q Consensus 187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~-~~~~~~----~ 249 (342)
+.+++..|+.+.++...+++++++|++.. .......+..+...++ +.+..... +...|. .
T Consensus 230 s~L~Y~vgd~~~sL~~iRECLKldpdHK~---Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 230 SQLLYTVGDAENSLKEIRECLKLDPDHKL---CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHccCcchhh---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 66666667777777777777777766630 0011111111111111 11111111 122222 2
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI 328 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 328 (342)
......+..|+...|++.+|+..+.+++..+|++..++...+.+|.....|+.|+..|+++.+.+|++..+...+.++-
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Ak 385 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAK 385 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 3345557788899999999999999999999999999999999999999999999999999999999999988886653
No 27
>KOG1125|consensus
Probab=99.93 E-value=3e-24 Score=177.72 Aligned_cols=246 Identities=19% Similarity=0.132 Sum_probs=206.1
Q ss_pred HhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHH
Q psy3701 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLM 117 (342)
Q Consensus 38 ~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 117 (342)
.|..+++.|+..+|+-+|+. +++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..
T Consensus 291 eG~~lm~nG~L~~A~LafEA------------AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLma 358 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEA------------AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMA 358 (579)
T ss_pred HHHHHHhcCCchHHHHHHHH------------HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHH
Confidence 44455555555555555555 579999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhccHHHHHHHHHHHhccCCCCchHHHH-------HHHHHhhhCCHHHHHHHHHHHHhhCC--CChHHHHHHHH
Q psy3701 118 YGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY-------VGLECGLTNNARLASKFFDLALSIAH--EDPFVIHEMGV 188 (342)
Q Consensus 118 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~ 188 (342)
||..|...|.-.+|+.++.+-+...|........ ..........+..-.+.|..+....| .++++...||.
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV 438 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence 9999999999999999999999887753211110 00011222334556677777777888 79999999999
Q ss_pred HHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHH
Q psy3701 189 IAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEE 268 (342)
Q Consensus 189 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 268 (342)
+|...|+|++|+.+|+.++...|.+ ..+|..||-++....+..+
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~Pnd------------------------------------~~lWNRLGAtLAN~~~s~E 482 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVKPND------------------------------------YLLWNRLGATLANGNRSEE 482 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcCCch------------------------------------HHHHHHhhHHhcCCcccHH
Confidence 9999999999999999999999999 5899999999999999999
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc----------hhHHhHHHHHHHHh
Q psy3701 269 ALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD----------SFATTMLSYVIEQL 331 (342)
Q Consensus 269 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~ 331 (342)
|+..|.+|+++.|....+++++|.++..+|.|++|.++|-.++.+.+.. ..+|..|..++..+
T Consensus 483 AIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 483 AISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred HHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999887651 24677777655443
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=1.6e-22 Score=185.79 Aligned_cols=300 Identities=12% Similarity=-0.001 Sum_probs=203.3
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy3701 29 EMKSALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGC 86 (342)
Q Consensus 29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~ 86 (342)
......+..+|.++...|++++|+..|++++ .++|+..+++++..+|+++. +..+|.
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~ 124 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY 124 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 3455567889999999999999999999975 26677777777777777777 777777
Q ss_pred HHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHH---------------------------------
Q psy3701 87 YYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMA--------------------------------- 133 (342)
Q Consensus 87 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~--------------------------------- 133 (342)
++...|++++|+..++++++.+|+++.++..++.++...|..++|+.
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 77777777777777777777777777777777777665555444333
Q ss_pred -------------HHHHHhccCCCCchHH-------HHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHH
Q psy3701 134 -------------AYFNAFNLFKGCHLPA-------LYVGLECGLTNNARLASKFFDLALSIAHEDP-FVIHEMGVIAYQ 192 (342)
Q Consensus 134 -------------~~~~al~~~~~~~~~~-------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 192 (342)
.++++++..|.++... ......+...|++++|+..|+++++..|..+ .+...+|.++..
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~ 284 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK 284 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence 3333333222222111 1101223566778888888888777654322 233346888888
Q ss_pred hcChhHHHHHHHHHHHhhhhcCcc-c-cccchhhHHHHhhhhHHHHHHHhchh-ccCC---------------CChHHHH
Q psy3701 193 NHNYTVAENCFMEALSKVKQLGGE-I-IADKWEPLLNNLGHKAEDKVKQLGGE-IIAD---------------KWEPLLN 254 (342)
Q Consensus 193 ~~~~~~A~~~~~~al~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------~~~~~~~ 254 (342)
.|++++|+..|+++++..|.+... . .......++...++ .+++...+... ...| ....++.
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~-~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN-YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc-HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 888888888888888766554100 0 00011112222222 22333332221 1111 2245677
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
.+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++++|++...+..++.+...
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999998877777665544
No 29
>KOG2002|consensus
Probab=99.93 E-value=1.3e-22 Score=177.17 Aligned_cols=311 Identities=16% Similarity=0.136 Sum_probs=226.7
Q ss_pred hhhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhcCCCcHHHH
Q psy3701 25 QLQSEMKSALLLLKGRVYEALENRALAADCYKGAL-----------------------LADLFKLAHELVDLYPDSAIAW 81 (342)
Q Consensus 25 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-----------------------~~~a~~~~~~~~~~~p~~~~~~ 81 (342)
+....+.+..+|.+|+++..+|+|++|..+|.++. ...+...+++++...|++.++.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 44455778889999999999999999999999987 3777888888888888888888
Q ss_pred HHHHHHHHHhC----ChHHHHHHHHHHhhcCCCcHHHH--------------------------------------HHhh
Q psy3701 82 YAVGCYYYLIG----RSDPARRFLGKATSLDKLFLPAW--------------------------------------LMYG 119 (342)
Q Consensus 82 ~~l~~~~~~~~----~~~~A~~~~~~a~~~~~~~~~~~--------------------------------------~~la 119 (342)
..+|..|...+ ..+.|..+..+++...|.+.++| .++|
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 88888888775 55777777777777776665553 4445
Q ss_pred hHHHhhccHHHHHHHHHHHhcc-----CCCC-----chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy3701 120 HSFAVENEHDQAMAAYFNAFNL-----FKGC-----HLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI 189 (342)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~al~~-----~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 189 (342)
..++..|++.+|...+.+++.. +++. ....+++|.++...++++.|.+.|..+++..|...+.+..+|.+
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~m 539 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCM 539 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHH
Confidence 5555567777777777777665 1111 12367788888888888888888888888888877777777766
Q ss_pred HHHhcChhHHHHHHHHHHHhhhhcCccccccc-h--------------------------hhHHHHhhh-----------
Q psy3701 190 AYQNHNYTVAENCFMEALSKVKQLGGEIIADK-W--------------------------EPLLNNLGH----------- 231 (342)
Q Consensus 190 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~--------------------------~~~~~~~~~----------- 231 (342)
....+...+|...+..++..+..++....... | ..++..+|+
T Consensus 540 a~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 540 ARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 66667777777777777776666652211110 0 011111111
Q ss_pred -----------------------------------------hHHHHHHHhchhc-cCCCChHHHHHHHHHHHHhhhHHHH
Q psy3701 232 -----------------------------------------KAEDKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEA 269 (342)
Q Consensus 232 -----------------------------------------~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A 269 (342)
...++...+.... .......+|.++|+||..+|+|..|
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHH
Confidence 0112222222211 1223457899999999999999999
Q ss_pred HHHHHHHHhhC--CCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcC
Q psy3701 270 LEFHKQALVVA--PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEES 335 (342)
Q Consensus 270 ~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 335 (342)
++.|+.+++.. .+++.++..||.++...|++.+|.++..+++...|.++.+.++++.++.+..+..
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI 767 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence 99999999864 3567899999999999999999999999999999999999999999988876643
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=99.93 E-value=2.9e-23 Score=184.01 Aligned_cols=222 Identities=11% Similarity=-0.023 Sum_probs=193.4
Q ss_pred CCCcHH--HHHHHHHHHHHh---CChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhh---------ccHHHHHHHHHHHh
Q psy3701 74 YPDSAI--AWYAVGCYYYLI---GRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE---------NEHDQAMAAYFNAF 139 (342)
Q Consensus 74 ~p~~~~--~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al 139 (342)
.|.+.+ .++..|..+... +++++|+.+|+++++++|+++.++..+|.++... +++++|+..+++++
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 444444 345556555433 4578999999999999999999999999887644 34899999999999
Q ss_pred ccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccc
Q psy3701 140 NLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIA 219 (342)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 219 (342)
+++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~----- 406 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA----- 406 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred cchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHhC
Q psy3701 220 DKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA-PMKASTFCCIGYIQALTG 298 (342)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 298 (342)
..+..++.++...|++++|+..+++++... |+++..+..+|.++...|
T Consensus 407 -------------------------------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G 455 (553)
T PRK12370 407 -------------------------------AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG 455 (553)
T ss_pred -------------------------------hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence 455556667778999999999999999875 788889999999999999
Q ss_pred ChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701 299 DLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331 (342)
Q Consensus 299 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 331 (342)
++++|+..+++.....|++..+...++..+...
T Consensus 456 ~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 456 KHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred CHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 999999999999999998888887777665443
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.92 E-value=1.2e-22 Score=161.97 Aligned_cols=204 Identities=18% Similarity=0.094 Sum_probs=190.3
Q ss_pred CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701 76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE 155 (342)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 155 (342)
..+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+...+..+|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 44788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhH
Q psy3701 156 CGLTNNARLASKFFDLALSIA--HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA 233 (342)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (342)
+...|++++|++.+++++... +.....+..+|.++...|++++|...+++++...|.+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------------- 168 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR-------------------- 168 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--------------------
Confidence 999999999999999999753 4567788999999999999999999999999998887
Q ss_pred HHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 234 EDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
...+..+|.++...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus 169 ----------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 169 ----------------PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred ----------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4788999999999999999999999999998888899999999999999999999998887766
Q ss_pred cc
Q psy3701 314 KR 315 (342)
Q Consensus 314 ~p 315 (342)
.|
T Consensus 233 ~~ 234 (234)
T TIGR02521 233 FP 234 (234)
T ss_pred Cc
Confidence 54
No 32
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.92 E-value=4.8e-22 Score=146.75 Aligned_cols=209 Identities=22% Similarity=0.146 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 157 (342)
..+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++..++.+.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701 158 LTNNARLASKFFDLALSI--AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED 235 (342)
Q Consensus 158 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (342)
.+|++++|...|++++.. .+..+..+.++|.|..+.|+++.|..+|+++++++|+.+
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~--------------------- 173 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP--------------------- 173 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC---------------------
Confidence 999999999999999873 456678899999999999999999999999999999994
Q ss_pred HHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701 236 KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR 315 (342)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 315 (342)
.....++...+..|+|..|..++++.....+-....+.....+-...|+-+.+-++=.+..+..|
T Consensus 174 ---------------~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 174 ---------------PALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred ---------------hHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 78889999999999999999999999888888888888888899999999999999999999999
Q ss_pred CchhHHh
Q psy3701 316 DDSFATT 322 (342)
Q Consensus 316 ~~~~~~~ 322 (342)
...+...
T Consensus 239 ~s~e~q~ 245 (250)
T COG3063 239 YSEEYQT 245 (250)
T ss_pred CcHHHHh
Confidence 8876543
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.91 E-value=6.5e-24 Score=173.20 Aligned_cols=235 Identities=16% Similarity=0.093 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcC
Q psy3701 29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLD 108 (342)
Q Consensus 29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 108 (342)
..+...|..+|.+....++++.|+..|++. +..++.++..+..++.+ ...+++++|...++++.+..
T Consensus 41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l------------~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~ 107 (280)
T PF13429_consen 41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKL------------LASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD 107 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc------------ccccccccccccccccc-cccccccccccccccccccc
Confidence 445677778999999999999999999995 57788888888888888 79999999999999998876
Q ss_pred CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC--CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701 109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--KGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM 186 (342)
Q Consensus 109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 186 (342)
+ ++..+.....++...++++++...+.++.... +.++..+..+|.++.+.|+.++|+..++++++.+|+++.+...+
T Consensus 108 ~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l 186 (280)
T PF13429_consen 108 G-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNAL 186 (280)
T ss_dssp -----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred c-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4 46777788889999999999999999977655 56778888999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701 187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY 266 (342)
Q Consensus 187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (342)
+.++...|+++++...+....+..|.++ ..+..+|.++..+|++
T Consensus 187 ~~~li~~~~~~~~~~~l~~~~~~~~~~~------------------------------------~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRLLKAAPDDP------------------------------------DLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH-HTSC------------------------------------CHCHHHHHHHHHHT-H
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCcCHH------------------------------------HHHHHHHHHhcccccc
Confidence 9999999999999999999888888874 6888999999999999
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 267 EEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 267 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
++|+.+|+++++.+|+++..+..+|.++...|+.++|..+++++++.
T Consensus 231 ~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 231 EEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999988764
No 34
>KOG2076|consensus
Probab=99.91 E-value=2.3e-21 Score=168.18 Aligned_cols=289 Identities=18% Similarity=0.102 Sum_probs=226.6
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH
Q psy3701 33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL 112 (342)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 112 (342)
.-++..|+.....|++++|..++.+ +++++|.++.+|+.+|.+|.++|+.+++..++-.|--++|++.
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~E------------vIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~ 207 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILME------------VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY 207 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH------------HHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh
Confidence 3444566777778888888888888 5799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh-----HHHHHHH
Q psy3701 113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP-----FVIHEMG 187 (342)
Q Consensus 113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~ 187 (342)
+.|..++.....+|++++|.-+|.++++.+|.+....+..+.+|.++|+...|...|.+++...|... ..-...+
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998321 1223445
Q ss_pred HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchh--------------------------------------------
Q psy3701 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE-------------------------------------------- 223 (342)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-------------------------------------------- 223 (342)
..+...++-+.|++.++.++....+-.+........
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~ 367 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNAL 367 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccc
Confidence 666667777888888887776222111000000000
Q ss_pred --------------hHHHHhh----hhHHHHHHHhchhc--cCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC-
Q psy3701 224 --------------PLLNNLG----HKAEDKVKQLGGEI--IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM- 282 (342)
Q Consensus 224 --------------~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~- 282 (342)
.....+- .-..+.+..+.... .....+..+..++.++...|++.+|+.++..+....+.
T Consensus 368 ~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 368 CEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred ccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 0000000 00001111111111 24455789999999999999999999999998876653
Q ss_pred chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701 283 KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE 333 (342)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 333 (342)
+..+|+.+|.||..+|.+++|+++|++++...|++.+++..|+.++.+.+.
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGN 498 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Confidence 457899999999999999999999999999999999999999999887654
No 35
>KOG2002|consensus
Probab=99.91 E-value=5.4e-22 Score=173.27 Aligned_cols=238 Identities=15% Similarity=0.169 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc-HHHHHHhhhHHHhhccHHHHHHHHHHHh
Q psy3701 61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF-LPAWLMYGHSFAVENEHDQAMAAYFNAF 139 (342)
Q Consensus 61 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 139 (342)
+.|...+..+++..|++..++...|.+.+..++|..|+.+|++++.++|.. ++..+.+|.|+..+|+.+.|+..|++++
T Consensus 147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ral 226 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERAL 226 (1018)
T ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHH
Confidence 456666666667777777777777777777777777777777777776653 4456666777777777777777777777
Q ss_pred ccCCCCchHHHHHHHHHhhh---CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcc
Q psy3701 140 NLFKGCHLPALYVGLECGLT---NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGE 216 (342)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 216 (342)
+++|.+..++..+|.+-... ..+..+...+.++...+|.+|.++..++.-++..|+|+.+..+...++......
T Consensus 227 qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~--- 303 (1018)
T KOG2002|consen 227 QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK--- 303 (1018)
T ss_pred hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh---
Confidence 77776666666666654433 345666777777777777777777777777777777777777776666654222
Q ss_pred ccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHH
Q psy3701 217 IIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-ASTFCCIGYIQA 295 (342)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~ 295 (342)
+..++.++.+|.+|..+|+|++|..+|.++++.+|++ .-.++.+|..+.
T Consensus 304 ------------------------------~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 304 ------------------------------SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred ------------------------------HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 2225678888999999999999999999988888887 667888889999
Q ss_pred HhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701 296 LTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331 (342)
Q Consensus 296 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 331 (342)
..|+++.|..+|++++...|++.+....||.++...
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 999999999999999999999888888888888765
No 36
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.91 E-value=1e-21 Score=160.43 Aligned_cols=226 Identities=17% Similarity=0.142 Sum_probs=175.9
Q ss_pred hHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701 28 SEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL 107 (342)
Q Consensus 28 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 107 (342)
+......++.+|.++...|++++|+..|+++ ++.+|+++.+|+.+|.++...|++++|+..|++++++
T Consensus 60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~A------------l~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 60 DEERAQLHYERGVLYDSLGLRALARNDFSQA------------LALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445677889999999999999999999996 5899999999999999999999999999999999999
Q ss_pred CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701 108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG 187 (342)
Q Consensus 108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 187 (342)
+|++..++..+|.++...|++++|+..++++++.+|+++....+ ..+....+++++|+..+.+.....+.+. |. .+
T Consensus 128 ~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~-~~ 203 (296)
T PRK11189 128 DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKEQ--WG-WN 203 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCccc--cH-HH
Confidence 99999999999999999999999999999999999998742222 2234557889999999988765443222 22 45
Q ss_pred HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 267 (342)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (342)
.+....|+..++ ..++.+.+..+..+ ...+....+|+.+|.++...|+++
T Consensus 204 ~~~~~lg~~~~~-~~~~~~~~~~~~~~-----------------------------~l~~~~~ea~~~Lg~~~~~~g~~~ 253 (296)
T PRK11189 204 IVEFYLGKISEE-TLMERLKAGATDNT-----------------------------ELAERLCETYFYLAKYYLSLGDLD 253 (296)
T ss_pred HHHHHccCCCHH-HHHHHHHhcCCCcH-----------------------------HHHHHHHHHHHHHHHHHHHCCCHH
Confidence 666677777554 34444432211110 001122579999999999999999
Q ss_pred HHHHHHHHHHhhCC-CchHHHHHHHHHHHHhCC
Q psy3701 268 EALEFHKQALVVAP-MKASTFCCIGYIQALTGD 299 (342)
Q Consensus 268 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~ 299 (342)
+|+.+|+++++.+| +..+..+.+..+....++
T Consensus 254 ~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 254 EAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 99999999999997 666666655555544433
No 37
>KOG1173|consensus
Probab=99.91 E-value=7.1e-22 Score=163.21 Aligned_cols=249 Identities=19% Similarity=0.210 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccH
Q psy3701 49 ALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH 128 (342)
Q Consensus 49 ~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 128 (342)
++|..+|....+.+..++.+.+++.+|-++..+-..-.++..+|+..+-...-.+.+...|+.+-.|+..|.-|...|++
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCc
Confidence 46778888999999999999999999988877755545999999988888888899999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q psy3701 129 DQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208 (342)
Q Consensus 129 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 208 (342)
.+|..+|.++..++|....+|...|..+...|..++|+..|..|-++.|........+|.-|...++++-|.++|.+|+.
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC-------
Q psy3701 209 KVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP------- 281 (342)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------- 281 (342)
+.|.+| .++..+|.+....+.|.+|..+|++++..-+
T Consensus 409 i~P~Dp------------------------------------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~ 452 (611)
T KOG1173|consen 409 IAPSDP------------------------------------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI 452 (611)
T ss_pred cCCCcc------------------------------------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc
Confidence 999994 7899999999999999999999999995322
Q ss_pred CchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701 282 MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE 333 (342)
Q Consensus 282 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 333 (342)
.....+.++|.++.+.+.+++|+.+|++++.+.|.++.++..+|.++..++.
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN 504 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 2345689999999999999999999999999999999999999988876543
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.91 E-value=2.5e-21 Score=154.29 Aligned_cols=204 Identities=19% Similarity=0.164 Sum_probs=185.8
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q psy3701 30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK 109 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 109 (342)
.....++.+|..+...|++++|+..++++ +..+|++..++..+|.++...|++++|+..++++++..|
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~------------l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 96 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKA------------LEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP 96 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34667788999999999999999999996 477899999999999999999999999999999999999
Q ss_pred CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC--CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701 110 LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--KGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG 187 (342)
Q Consensus 110 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 187 (342)
.+..++..+|.++...|++++|+..+++++... +.....+..+|.++...|++++|...+++++...|+++..+..+|
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 176 (234)
T TIGR02521 97 NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELA 176 (234)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHH
Confidence 999999999999999999999999999999864 445667888999999999999999999999999999999999999
Q ss_pred HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 267 (342)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (342)
.++...|++++|+..+++++...|.+ ...+..++.++...|+.+
T Consensus 177 ~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~ 220 (234)
T TIGR02521 177 ELYYLRGQYKDARAYLERYQQTYNQT------------------------------------AESLWLGIRIARALGDVA 220 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999986655 467778899999999999
Q ss_pred HHHHHHHHHHhhCC
Q psy3701 268 EALEFHKQALVVAP 281 (342)
Q Consensus 268 ~A~~~~~~al~~~~ 281 (342)
+|..+.+.+....|
T Consensus 221 ~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 221 AAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHhhCc
Confidence 99999887766543
No 39
>KOG2003|consensus
Probab=99.91 E-value=1.4e-21 Score=157.98 Aligned_cols=276 Identities=15% Similarity=0.085 Sum_probs=196.8
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhC--ChHHHHHHHHHHhhcCCC
Q psy3701 34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLY-PDSAIAWYAVGCYYYLIG--RSDPARRFLGKATSLDKL 110 (342)
Q Consensus 34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~ 110 (342)
+-..++-.+++.|+++.|++.++--. +.+ .....+-.++...++.+| ++..|..+...++.++..
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~------------~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry 488 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFE------------KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY 488 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHH------------hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc
Confidence 33357778888999999988776521 222 122233344444444433 566777777777777777
Q ss_pred cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701 111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA 190 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 190 (342)
++.+..+.|.+.+..|++++|.+.|++++..+.....+++++|..+..+|+.++|+++|-+.-.+--++..++..++.+|
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777777777777777777777777767777777777777777777777777776666666777777777777
Q ss_pred HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH------HHHH-HhchhccCCCChHHHHHHHHHHHHh
Q psy3701 191 YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE------DKVK-QLGGEIIADKWEPLLNNLGHVNRKL 263 (342)
Q Consensus 191 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (342)
..+.+..+|++++.++..+-|.+| .++..++..+. .+.+ .++.....|...+..-.+|..|...
T Consensus 569 e~led~aqaie~~~q~~slip~dp---------~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIPNDP---------AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCCCCH---------HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh
Confidence 777777777777777777777665 44444444332 1111 2222344555567888899999999
Q ss_pred hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 264 KKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 264 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
.-+++|+.+|+++.-+.|+...-...++.|+.+.|+|..|.+.|+...+..|.+.+....|.++...
T Consensus 640 qf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~d 706 (840)
T KOG2003|consen 640 QFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence 9999999999999999999888888899999999999999999999999999999887777666443
No 40
>PLN02789 farnesyltranstransferase
Probab=99.90 E-value=8.4e-21 Score=154.51 Aligned_cols=233 Identities=8% Similarity=-0.061 Sum_probs=198.4
Q ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-ChHHHHHHHHHHhhcCCCcHHHHHHhhh
Q psy3701 42 YEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGH 120 (342)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~ 120 (342)
+...+.+++|+..+.+ ++..+|.+..+|...|.++..+| ++++++.+++++++.+|++..+|...+.
T Consensus 47 l~~~e~serAL~lt~~------------aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~ 114 (320)
T PLN02789 47 YASDERSPRALDLTAD------------VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRW 114 (320)
T ss_pred HHcCCCCHHHHHHHHH------------HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence 3444555555555555 67999999999999999999998 6899999999999999999999999999
Q ss_pred HHHhhccH--HHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh---cC
Q psy3701 121 SFAVENEH--DQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN---HN 195 (342)
Q Consensus 121 ~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 195 (342)
++...|+. ++++.++.++++.+|.+..+|...+.++...|+++++++.+.++++.+|.+..+|+..+.+.... |+
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 99888874 78899999999999999999999999999999999999999999999999999999999998776 33
Q ss_pred h----hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH----hhhHH
Q psy3701 196 Y----TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYE 267 (342)
Q Consensus 196 ~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 267 (342)
+ ++++.+..+++..+|++ ..+|..++.++.. .++..
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N------------------------------------~SaW~Yl~~ll~~~~~~l~~~~ 238 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRN------------------------------------ESPWRYLRGLFKDDKEALVSDP 238 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCC------------------------------------cCHHHHHHHHHhcCCcccccch
Confidence 3 46888889999999999 4799999999987 45678
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHHhC------------------ChHHHHHHHHHHHhcccCchhHHh
Q psy3701 268 EALEFHKQALVVAPMKASTFCCIGYIQALTG------------------DLDSAVNYFHKTMALKRDDSFATT 322 (342)
Q Consensus 268 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~ 322 (342)
+|++.+.+++...|.++.++..++.++.... ..++|...++..-+.+|--..-|.
T Consensus 239 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 239 EVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred hHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 8999999999999999999999999998632 235677777777555664444333
No 41
>KOG0548|consensus
Probab=99.90 E-value=1e-20 Score=155.75 Aligned_cols=145 Identities=17% Similarity=0.157 Sum_probs=108.8
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHhhhhcC----------------------cccc--ccchhhHHHHhhhhHHHHHHHhc
Q psy3701 186 MGVIAYQNHNYTVAENCFMEALSKVKQLG----------------------GEII--ADKWEPLLNNLGHKAEDKVKQLG 241 (342)
Q Consensus 186 l~~~~~~~~~~~~A~~~~~~al~~~~~~~----------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 241 (342)
+|..+...++++.|+.+|++++....... .+.. ......-.+..+++. .++..+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~-~Av~~Yt 382 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYP-EAVKHYT 382 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHH-HHHHHHH
Confidence 45566666777777777777765443311 0100 000112222222332 3333333
Q ss_pred h-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhH
Q psy3701 242 G-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320 (342)
Q Consensus 242 ~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 320 (342)
+ ....|..+.+|.+.|.||.++|.+..|+...+++++++|+...+|...|.++..+.+|++|.+.|+++++.+|++.++
T Consensus 383 eAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 383 EAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 3 556677789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHh
Q psy3701 321 TTMLSYVIEQL 331 (342)
Q Consensus 321 ~~~l~~~~~~~ 331 (342)
...+.+|+...
T Consensus 463 ~~~~~rc~~a~ 473 (539)
T KOG0548|consen 463 IDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 42
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.90 E-value=1.5e-20 Score=139.00 Aligned_cols=210 Identities=17% Similarity=0.130 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcC
Q psy3701 29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLD 108 (342)
Q Consensus 29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 108 (342)
.....+...+|--|+..|++..|...++++ ++.+|++..+|..++.+|...|+.+.|.+.|++|+.++
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekA------------L~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~ 99 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKA------------LEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA 99 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Confidence 345567778999999999999999999997 59999999999999999999999999999999999999
Q ss_pred CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc--CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701 109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL--FKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM 186 (342)
Q Consensus 109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 186 (342)
|++.+++.+.|..++.+|++++|...|++++.. .+....++-++|.|..+.|+++.|..+|+++++.+|+.+.....+
T Consensus 100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~ 179 (250)
T COG3063 100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLEL 179 (250)
T ss_pred CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHH
Confidence 999999999999999999999999999999975 355678899999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701 187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY 266 (342)
Q Consensus 187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (342)
+..++..|+|-.|..++++.....+.. ++.+.....+-...|+-
T Consensus 180 a~~~~~~~~y~~Ar~~~~~~~~~~~~~------------------------------------A~sL~L~iriak~~gd~ 223 (250)
T COG3063 180 ARLHYKAGDYAPARLYLERYQQRGGAQ------------------------------------AESLLLGIRIAKRLGDR 223 (250)
T ss_pred HHHHHhcccchHHHHHHHHHHhccccc------------------------------------HHHHHHHHHHHHHhccH
Confidence 999999999999999999987776644 45666666777788999
Q ss_pred HHHHHHHHHHHhhCCCchHH
Q psy3701 267 EEALEFHKQALVVAPMKAST 286 (342)
Q Consensus 267 ~~A~~~~~~al~~~~~~~~~ 286 (342)
+.+-++=.+..+..|...+.
T Consensus 224 ~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 224 AAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHHHHHhCCCcHHH
Confidence 99988888888888887654
No 43
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=1.4e-20 Score=173.12 Aligned_cols=199 Identities=10% Similarity=-0.099 Sum_probs=143.7
Q ss_pred HHhCChHHHHHHHHHHhhcCCCcH-HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC----chHHHHHHHHHhhhCCHH
Q psy3701 89 YLIGRSDPARRFLGKATSLDKLFL-PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC----HLPALYVGLECGLTNNAR 163 (342)
Q Consensus 89 ~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~ 163 (342)
...|++++|+..|+++++..|..+ .+...+|.++...|++++|+..|++++..+|.+ ......++.++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 455666666666666666543221 223334666666666666666666666665544 123444555566666666
Q ss_pred HHHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH
Q psy3701 164 LASKFFDLALSIAHED---------------PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN 228 (342)
Q Consensus 164 ~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 228 (342)
+|+..++++....|.. ..++..+|.++...|++++|+..+++++...|.+
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n--------------- 392 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN--------------- 392 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------
Confidence 6666666666655421 2345566666666666666666666666666666
Q ss_pred hhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701 229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFH 308 (342)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 308 (342)
..++..+|.++...|++++|+..+++++..+|++..+++.+|.++...|++++|...++
T Consensus 393 ---------------------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 393 ---------------------QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred ---------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCchhHHhH
Q psy3701 309 KTMALKRDDSFATTM 323 (342)
Q Consensus 309 ~al~~~p~~~~~~~~ 323 (342)
++++..|+++.+...
T Consensus 452 ~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 452 DVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHhCCCCHHHHHH
Confidence 999999999976543
No 44
>PLN02789 farnesyltranstransferase
Probab=99.89 E-value=5.7e-21 Score=155.51 Aligned_cols=217 Identities=9% Similarity=-0.029 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc-cHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701 79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN-EHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157 (342)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 157 (342)
+++-.+-.++...++.++|+..+.++++++|++..+|...+.++...| ++++++..+.++++.+|++..+|...+.++.
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 333333334455678999999999999999999999999999999998 6899999999999999999999999999998
Q ss_pred hhCCH--HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701 158 LTNNA--RLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED 235 (342)
Q Consensus 158 ~~~~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (342)
..|+. ++++.+++++++.+|++..+|...+.++...|+++++++.+.++++.+|.+
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N---------------------- 175 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN---------------------- 175 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc----------------------
Confidence 88874 788999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhccCCCChHHHHHHHHHHHHh---hhH----HHHHHHHHHHHhhCCCchHHHHHHHHHHHH----hCChHHHH
Q psy3701 236 KVKQLGGEIIADKWEPLLNNLGHVNRKL---KKY----EEALEFHKQALVVAPMKASTFCCIGYIQAL----TGDLDSAV 304 (342)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 304 (342)
..+|..++.++... |.+ ++++.+..+++..+|++..+|..++.++.. .++..+|.
T Consensus 176 --------------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 176 --------------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred --------------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 48999999888765 333 578889999999999999999999999988 45678899
Q ss_pred HHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701 305 NYFHKTMALKRDDSFATTMLSYVIEQL 331 (342)
Q Consensus 305 ~~~~~al~~~p~~~~~~~~l~~~~~~~ 331 (342)
..+.+++...|+++.+...|..++..-
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 999999999999999999999888753
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.88 E-value=1.2e-19 Score=155.40 Aligned_cols=265 Identities=11% Similarity=-0.023 Sum_probs=177.2
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH-
Q psy3701 34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL- 112 (342)
Q Consensus 34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~- 112 (342)
.....|......|+++.|.+...++ .+..|+....+...|.++...|+++.|..++.++.+..|++.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~------------~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l 153 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKN------------ADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI 153 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH------------hhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch
Confidence 3345666667777777777777664 466677677777778888888888888888888887777764
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh-----------------
Q psy3701 113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSI----------------- 175 (342)
Q Consensus 113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------- 175 (342)
.+....+.++...|++++|...+++..+..|+++.++..++.++...|++++|.+.+.+..+.
T Consensus 154 ~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~ 233 (409)
T TIGR00540 154 LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEI 233 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 455556888888888888888888888888888888888888888888888777766666533
Q ss_pred ---------------------CC----CChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701 176 ---------------------AH----EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG 230 (342)
Q Consensus 176 ---------------------~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 230 (342)
.| +++.++..++..+...|++++|...++++++..|++...... ..........
T Consensus 234 ~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~ 312 (409)
T TIGR00540 234 GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKP 312 (409)
T ss_pred HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCC
Confidence 23 356677778888888888999999999988888877411000 0000000000
Q ss_pred hhHHHHHHHhch-hccCCCCh--HHHHHHHHHHHHhhhHHHHHHHHH--HHHhhCCCchHHHHHHHHHHHHhCChHHHHH
Q psy3701 231 HKAEDKVKQLGG-EIIADKWE--PLLNNLGHVNRKLKKYEEALEFHK--QALVVAPMKASTFCCIGYIQALTGDLDSAVN 305 (342)
Q Consensus 231 ~~~~~~~~~~~~-~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 305 (342)
.........+.. ....|..+ .....+|.++.+.|++++|.++|+ .+++..|+... +..+|.++.+.|+.++|.+
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHH
Confidence 111222222222 33455555 566677777777777777777777 45556665544 4467777777777777777
Q ss_pred HHHHHHh
Q psy3701 306 YFHKTMA 312 (342)
Q Consensus 306 ~~~~al~ 312 (342)
++++++.
T Consensus 392 ~~~~~l~ 398 (409)
T TIGR00540 392 MRQDSLG 398 (409)
T ss_pred HHHHHHH
Confidence 7777654
No 46
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=4.4e-19 Score=160.81 Aligned_cols=300 Identities=10% Similarity=-0.079 Sum_probs=194.0
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHH----------------------HHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALL----------------------ADLFKLAHELVDLYPDSAIAWYAVGCYY 88 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----------------------~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 88 (342)
.....+..+....+.|+++.|++.|++++. ++|+..+++++...|........+|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 344667788888899999999999888761 4555566665533334444444456677
Q ss_pred HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHH
Q psy3701 89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKF 168 (342)
Q Consensus 89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 168 (342)
...|++++|++.|+++++.+|+++.++..++.++...++.++|++.++++...+|..... ..++.++...++..+|++.
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777764333 3344444445566557777
Q ss_pred HHHHHhhCCCChHHHHH---------------------------------------------------------------
Q psy3701 169 FDLALSIAHEDPFVIHE--------------------------------------------------------------- 185 (342)
Q Consensus 169 ~~~~~~~~~~~~~~~~~--------------------------------------------------------------- 185 (342)
++++++.+|++..++..
T Consensus 192 ~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 192 SSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 77777777665544222
Q ss_pred -------------------------------------------------------------HHHHHHHhcChhHHHHHHH
Q psy3701 186 -------------------------------------------------------------MGVIAYQNHNYTVAENCFM 204 (342)
Q Consensus 186 -------------------------------------------------------------l~~~~~~~~~~~~A~~~~~ 204 (342)
.|..|...++.++|+.+|+
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 2333333333333333333
Q ss_pred HHHHhhhhcC---cccc-ccchhhHHHHhhhhHHHHHHHhch----------------hccCCCChHHHHHHHHHHHHhh
Q psy3701 205 EALSKVKQLG---GEII-ADKWEPLLNNLGHKAEDKVKQLGG----------------EIIADKWEPLLNNLGHVNRKLK 264 (342)
Q Consensus 205 ~al~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~g 264 (342)
+++...|... .... ......++...+++ +++...+.. ....|++......++.++...|
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~-~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQL-DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccH-HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 3333221100 0000 00011111111111 111111111 1245566778888999999999
Q ss_pred hHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 265 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
++.+|++.+++.+...|.++.++..+|.++...|.+.+|...++.+..++|++..+...++.+...+.
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQ 498 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999988888877765543
No 47
>KOG1174|consensus
Probab=99.88 E-value=4.3e-19 Score=141.74 Aligned_cols=249 Identities=12% Similarity=0.084 Sum_probs=195.2
Q ss_pred hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH----------------------------------HHH
Q psy3701 72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA----------------------------------WLM 117 (342)
Q Consensus 72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------------------------~~~ 117 (342)
..-|++...+..+|.+++..|++++|+..|+++..++|..... |+-
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 5556666666666666666666666666666666666654332 555
Q ss_pred hhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChh
Q psy3701 118 YGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT 197 (342)
Q Consensus 118 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (342)
-+...+...++..|+.+-+++++.+|.+..++...|..+...|+.++|+-.|+.+..+.|...+.+..+-.+|...|++.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 55666667778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhhhcCccccccchhhHHHHhh--------hhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHH
Q psy3701 198 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLG--------HKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEE 268 (342)
Q Consensus 198 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~ 268 (342)
+|......++..-|.+. ..+..+| ...+.+...+++ ....|.+..+-..++..+...|++.+
T Consensus 386 EA~~~An~~~~~~~~sA---------~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 386 EANALANWTIRLFQNSA---------RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKD 456 (564)
T ss_pred HHHHHHHHHHHHhhcch---------hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccch
Confidence 88888888888877774 3333333 122233333333 56788888899999999999999999
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 269 ALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 269 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
++..+++.+...|+ ...+..+|.++...+.+.+|+++|..+++++|++..+...|.++-++
T Consensus 457 ~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 457 IIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 99999999998875 45788999999999999999999999999999999998888766544
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.88 E-value=2.8e-19 Score=152.36 Aligned_cols=262 Identities=11% Similarity=-0.046 Sum_probs=178.1
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAV-GCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
..-.+..|......|++++|.+...++ ...++++..++.+ +......|+++.|..++.++.+.+|+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~-------------~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~ 150 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRN-------------ADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADN 150 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH-------------HhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc
Confidence 334456677777778888887666664 2223334544444 55668899999999999999988888
Q ss_pred cHHH-HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC-------------
Q psy3701 111 FLPA-WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIA------------- 176 (342)
Q Consensus 111 ~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------- 176 (342)
+..+ ....+.++...|++++|+..+++..+..|+++.++..++.+|...|++++|++.+.+..+..
T Consensus 151 ~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~ 230 (398)
T PRK10747 151 DQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQ 230 (398)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 7543 34458888999999999999999999999999999999999999999999886666555322
Q ss_pred -----------------------------CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHH
Q psy3701 177 -----------------------------HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN 227 (342)
Q Consensus 177 -----------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 227 (342)
|+++.+...++..+...|+.++|...++++++..++.. ........
T Consensus 231 a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~-----l~~l~~~l 305 (398)
T PRK10747 231 AWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER-----LVLLIPRL 305 (398)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-----HHHHHhhc
Confidence 34566677778888888999999999888888444331 00000000
Q ss_pred HhhhhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHH
Q psy3701 228 NLGHKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNY 306 (342)
Q Consensus 228 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 306 (342)
.. ....+.+..... ....|+.+..+..+|.++...|++++|.++|+++++..|++.. +..++.++.+.|+.++|..+
T Consensus 306 ~~-~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 306 KT-NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred cC-CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 01 122223333332 3455666667777777777777777777777777777766543 44577777777777777777
Q ss_pred HHHHHhc
Q psy3701 307 FHKTMAL 313 (342)
Q Consensus 307 ~~~al~~ 313 (342)
|++++.+
T Consensus 384 ~~~~l~~ 390 (398)
T PRK10747 384 RRDGLML 390 (398)
T ss_pred HHHHHhh
Confidence 7777654
No 49
>KOG1129|consensus
Probab=99.88 E-value=3.7e-21 Score=149.07 Aligned_cols=212 Identities=16% Similarity=0.158 Sum_probs=199.1
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCC
Q psy3701 82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNN 161 (342)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~ 161 (342)
..+|.||+++|-+.+|.+.++.+++..| .++.+..++.+|.+..+...|+..+.+.++..|.+......++.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 5689999999999999999999999887 488999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhc
Q psy3701 162 ARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLG 241 (342)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (342)
.++|.++|+.+++..|.+.++.-.+|.-|+..++.+-|+.+|++.++..-.+
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s---------------------------- 357 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS---------------------------- 357 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC----------------------------
Confidence 9999999999999999999999999999999999999999999999998888
Q ss_pred hhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC---CchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 242 GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP---MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
++.+.++|.|.+..++++-++..|++++.... .-.++|+++|.+....|++..|.++|+-++..+|++.
T Consensus 358 --------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 358 --------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred --------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 48999999999999999999999999998754 2358999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHH
Q psy3701 319 FATTMLSYVIEQ 330 (342)
Q Consensus 319 ~~~~~l~~~~~~ 330 (342)
+++.+|+.+-.+
T Consensus 430 ealnNLavL~~r 441 (478)
T KOG1129|consen 430 EALNNLAVLAAR 441 (478)
T ss_pred HHHHhHHHHHhh
Confidence 999999865443
No 50
>KOG0550|consensus
Probab=99.87 E-value=1.4e-20 Score=150.10 Aligned_cols=255 Identities=21% Similarity=0.197 Sum_probs=193.7
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
.++-....|..+....+|..|+..|..+ ++..|+++..|.+.+.++...+++++|....++.++++|.
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~A------------i~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~ 115 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFA------------IDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG 115 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHH------------HHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCC
Confidence 3445556888888888999999988886 6999999999999999999999999999999999888887
Q ss_pred cHHHHHHhhhHHHh----------------------------------------------------hccHHHHHHHHHHH
Q psy3701 111 FLPAWLMYGHSFAV----------------------------------------------------ENEHDQAMAAYFNA 138 (342)
Q Consensus 111 ~~~~~~~la~~~~~----------------------------------------------------~g~~~~A~~~~~~a 138 (342)
.+..+...+.++.. .|++++|...-...
T Consensus 116 ~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 116 FSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred ccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 66555444444444 44455555555555
Q ss_pred hccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChH------------HHHHHHHHHHHhcChhHHHHHHHHH
Q psy3701 139 FNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPF------------VIHEMGVIAYQNHNYTVAENCFMEA 206 (342)
Q Consensus 139 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~A~~~~~~a 206 (342)
+++++.+..+++..|.++...++.+.|+..|++++.++|+... .|..-|.-.++.|++.+|.+.|..+
T Consensus 196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred HhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence 5556666666666666666666666666666666666665432 2445566666666666666666666
Q ss_pred HHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH
Q psy3701 207 LSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST 286 (342)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 286 (342)
+.++|++. ...+.+|.+++.+..++|+..+|+..++.+++++|....+
T Consensus 276 l~idP~n~--------------------------------~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 276 LNIDPSNK--------------------------------KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hcCCcccc--------------------------------chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 66666652 3346789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 287 FCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
+...|.|+..+++|++|++.|+++++...+ ......+..+-..
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~a 366 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLA 366 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHH
Confidence 999999999999999999999999998766 5555555544433
No 51
>KOG1840|consensus
Probab=99.87 E-value=1.4e-19 Score=153.83 Aligned_cols=248 Identities=17% Similarity=0.123 Sum_probs=199.9
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc---
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELV-DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL--- 107 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--- 107 (342)
..+...++..|..+|+|++|+..++.++.. ..+.. ...|.-......+|.+|...+++.+|+..|++|+.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~-----l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRI-----LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 444555999999999999999999998622 11100 124555556667999999999999999999999975
Q ss_pred -----CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCC--------CCchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701 108 -----DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK--------GCHLPALYVGLECGLTNNARLASKFFDLALS 174 (342)
Q Consensus 108 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 174 (342)
+|....++.+||.+|...|++++|..++++++++.. .-...+..++.++..++++++|+.+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344567899999999999999999999999998742 2334566788999999999999999999987
Q ss_pred hC-----CC---ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccC
Q psy3701 175 IA-----HE---DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIA 246 (342)
Q Consensus 175 ~~-----~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
+. ++ -+....++|.+|..+|++++|.+.+++++++..... ....
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~----------------------------~~~~ 405 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL----------------------------GKKD 405 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc----------------------------cCcC
Confidence 53 22 345788999999999999999999999999876552 1112
Q ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-------CCchHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701 247 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA-------PMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312 (342)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 312 (342)
......+..+|..+.+.+++.+|...|.++..+. |+....+.+|+.+|..+|++++|+++.++++.
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3335678889999999999999999999987652 44457789999999999999999999999884
No 52
>KOG0495|consensus
Probab=99.87 E-value=9.8e-19 Score=147.22 Aligned_cols=285 Identities=15% Similarity=0.080 Sum_probs=230.8
Q ss_pred HhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChH
Q psy3701 38 KGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSD 95 (342)
Q Consensus 38 ~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 95 (342)
.+..+...|+...|..++.++. ++.|..++.++....| ...+|+.-+.....+++.+
T Consensus 590 ~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHH
Confidence 4445555566666666666554 2444444444444444 4677888888888889999
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh
Q psy3701 96 PARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSI 175 (342)
Q Consensus 96 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 175 (342)
+|+++++++++..|+....|..+|+++.++++.+.|...|...++..|..+..|..++.+-.+.|+...|...++++...
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHH
Q psy3701 176 AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNN 255 (342)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (342)
+|++...|.....+-.+.|+.+.|.....++++..|.++ ..|............ .....+........+.++..
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg-----~LWaEaI~le~~~~r-kTks~DALkkce~dphVlla 822 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSG-----LLWAEAIWLEPRPQR-KTKSIDALKKCEHDPHVLLA 822 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc-----hhHHHHHHhccCccc-chHHHHHHHhccCCchhHHH
Confidence 999999999999999999999999999999999999984 444433332221111 11112223344555678899
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701 256 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE 329 (342)
Q Consensus 256 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 329 (342)
+|..+....++++|.++|.++++.+|++.++|..+-..+...|.-++-.+.+.++....|.+...|...+.-..
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i~ 896 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDIK 896 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988887765544
No 53
>KOG1125|consensus
Probab=99.86 E-value=1.8e-20 Score=155.65 Aligned_cols=216 Identities=15% Similarity=0.143 Sum_probs=160.3
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCC
Q psy3701 82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNN 161 (342)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~ 161 (342)
+..|..+++.|+..+|.-+|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 55677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHH-------HHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701 162 ARLASKFFDLALSIAHEDPFVIHE-------MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE 234 (342)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (342)
-.+|+.++.+-+...|.....-.. ...-......+..-.+.|-.+....|.
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~---------------------- 426 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT---------------------- 426 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC----------------------
Confidence 777777777777666543211100 000000000111222333333333331
Q ss_pred HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701 235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 314 (342)
...+++...||.+|.-.|+|++|+.+|+.|+...|++...|..||-.+....+.++|+..|++|+++.
T Consensus 427 ------------~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq 494 (579)
T KOG1125|consen 427 ------------KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ 494 (579)
T ss_pred ------------CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC
Confidence 12368999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHhHHHHHHHHh
Q psy3701 315 RDDSFATTMLSYVIEQL 331 (342)
Q Consensus 315 p~~~~~~~~l~~~~~~~ 331 (342)
|+...++++|+.++..+
T Consensus 495 P~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 495 PGYVRVRYNLGISCMNL 511 (579)
T ss_pred CCeeeeehhhhhhhhhh
Confidence 99999999998776554
No 54
>KOG2076|consensus
Probab=99.86 E-value=5.2e-19 Score=153.81 Aligned_cols=276 Identities=15% Similarity=0.151 Sum_probs=204.4
Q ss_pred hhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701 27 QSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATS 106 (342)
Q Consensus 27 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 106 (342)
+.+.....|+.+|.+|..+|+.+++....-.+ -..+|.+.+.|..++....++|++++|+-+|.+|++
T Consensus 168 qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA------------AHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~ 235 (895)
T KOG2076|consen 168 QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA------------AHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQ 235 (895)
T ss_pred hCccchhhHHHHHHHHHHcccHHHHHHHHHHH------------HhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 44556788999999999999999999888875 478999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchH-----HHHHHHHHhhhCCHHHHHHHHHHHHhhCC--CC
Q psy3701 107 LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLP-----ALYVGLECGLTNNARLASKFFDLALSIAH--ED 179 (342)
Q Consensus 107 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~ 179 (342)
.+|.+....+..+.++.++|+...|...|.+++...|....- -...+..+...++-+.|++.++.++.... ..
T Consensus 236 ~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~ 315 (895)
T KOG2076|consen 236 ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEAS 315 (895)
T ss_pred cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999942211 12245666667777888888888776221 12
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHhh--hhc--------------------C-----------------------
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKV--KQL--------------------G----------------------- 214 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~--------------------~----------------------- 214 (342)
..-+..++.++.....++.|........... +++ .
T Consensus 316 ~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~ 395 (895)
T KOG2076|consen 316 LEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKEREL 395 (895)
T ss_pred ccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccch
Confidence 2334455555555555555554443332200 000 0
Q ss_pred ----------ccccccchhhHHHHhhhh------HHHHHHHhchhccCCCC--hHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy3701 215 ----------GEIIADKWEPLLNNLGHK------AEDKVKQLGGEIIADKW--EPLLNNLGHVNRKLKKYEEALEFHKQA 276 (342)
Q Consensus 215 ----------~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a 276 (342)
...+...-...+..+.+. ..+++..+......+.+ ..+|..+|.||..+|.+++|+.+|+++
T Consensus 396 ~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kv 475 (895)
T KOG2076|consen 396 LEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKV 475 (895)
T ss_pred HHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222222222223322221 22444444443333322 559999999999999999999999999
Q ss_pred HhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701 277 LVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 277 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 314 (342)
+...|++.++...++.++.++|++++|.+.+++...-+
T Consensus 476 l~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 476 LILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 99999999999999999999999999999999877333
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=2.9e-18 Score=132.84 Aligned_cols=234 Identities=15% Similarity=0.099 Sum_probs=202.7
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc----
Q psy3701 36 LLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---- 111 (342)
Q Consensus 36 ~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---- 111 (342)
|..|.-+.-..+.++|++.|.. +++.+|...++...+|..+.+.|..+.|+..-+..+. .|+.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e------------~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~q 105 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLE------------MLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQ 105 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHH------------HHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHH
Confidence 4566666666777777777777 5789999999999999999999999999998776655 3443
Q ss_pred -HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh-----HHHHH
Q psy3701 112 -LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP-----FVIHE 185 (342)
Q Consensus 112 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~ 185 (342)
.-+...+|.-|+..|=+|.|...|....+...-...+...+..+|....+|++|++.-++..++.+... ..+..
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence 346788999999999999999999999886666677888899999999999999999999999887753 45778
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701 186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK 265 (342)
Q Consensus 186 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (342)
++..+....+.+.|+..+.++++.+|+. +.+-..+|.+....|+
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~c------------------------------------vRAsi~lG~v~~~~g~ 229 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKC------------------------------------VRASIILGRVELAKGD 229 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccc------------------------------------eehhhhhhHHHHhccc
Confidence 8888889999999999999999999999 5788899999999999
Q ss_pred HHHHHHHHHHHHhhCCCch-HHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 266 YEEALEFHKQALVVAPMKA-STFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 266 ~~~A~~~~~~al~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
|+.|++.++.+++.+|+.. .+.-.+..+|.+.|+.++....+.++.+..++..
T Consensus 230 y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 230 YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 9999999999999999864 6788899999999999999999999999887654
No 56
>KOG0548|consensus
Probab=99.85 E-value=1.3e-18 Score=143.57 Aligned_cols=282 Identities=15% Similarity=0.090 Sum_probs=200.0
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHH
Q psy3701 37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWL 116 (342)
Q Consensus 37 ~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 116 (342)
.+|+..+..|+|+.|+.+|..+ +..+|.+...+.+...+|..+|+|++|++.-.+.++++|+.+..|.
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~a------------i~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~ 74 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEA------------IMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYS 74 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHH------------HccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHH
Confidence 5788999999999999999997 5889999999999999999999999999999999999999999999
Q ss_pred HhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh-----------------C----CH---HHHHHHHHHH
Q psy3701 117 MYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT-----------------N----NA---RLASKFFDLA 172 (342)
Q Consensus 117 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-----------------~----~~---~~A~~~~~~~ 172 (342)
.+|..+.-.|+|++|+..|.+.++.+|++......++.++... + ++ +.+.....+.
T Consensus 75 r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 75 RKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred HhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 9999999999999999999999999988776666555554111 0 00 0111111111
Q ss_pred HhhCCCC--------------------------------------------------------------hHHHHHHHHHH
Q psy3701 173 LSIAHED--------------------------------------------------------------PFVIHEMGVIA 190 (342)
Q Consensus 173 ~~~~~~~--------------------------------------------------------------~~~~~~l~~~~ 190 (342)
+..+|.+ ..-...+|...
T Consensus 155 ~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 155 IQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 1111100 00134556666
Q ss_pred HHhcChhHHHHHHHHHHHhhhhcCccc--------------------------cccchh------hHHHHhhh-------
Q psy3701 191 YQNHNYTVAENCFMEALSKVKQLGGEI--------------------------IADKWE------PLLNNLGH------- 231 (342)
Q Consensus 191 ~~~~~~~~A~~~~~~al~~~~~~~~~~--------------------------~~~~~~------~~~~~~~~------- 231 (342)
+...++..|++.|.+++.++ .+.+-. ....|. .....+|.
T Consensus 235 ykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHh
Confidence 66666666666666666665 221000 000000 01111110
Q ss_pred ------hHH-------------------HHHHHh-chhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchH
Q psy3701 232 ------KAE-------------------DKVKQL-GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 285 (342)
Q Consensus 232 ------~~~-------------------~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 285 (342)
++. +..... ......|..+.--..-|+.++..|+|..|+..|.+++..+|+++.
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 000 111111 112244555666667799999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701 286 TFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331 (342)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 331 (342)
.+.+.|.||.++|.+..|+...+.+++++|++..++..-+.++..+
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888877776544
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.85 E-value=1.2e-18 Score=149.24 Aligned_cols=209 Identities=11% Similarity=0.105 Sum_probs=154.8
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q psy3701 34 LLLLKGRVYEALENRALAADCYKGAL-----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYYYL 90 (342)
Q Consensus 34 ~~~~~g~~~~~~~~~~~A~~~~~~~~-----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 90 (342)
.+...|++....|++++|...+.++. +++|...++.+.+..|+++.++..++.++..
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR 199 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34467888999999999999888753 3666777888888888888888888888888
Q ss_pred hCChHHHHHHHHHHhhcC--------------------------------------C----CcHHHHHHhhhHHHhhccH
Q psy3701 91 IGRSDPARRFLGKATSLD--------------------------------------K----LFLPAWLMYGHSFAVENEH 128 (342)
Q Consensus 91 ~~~~~~A~~~~~~a~~~~--------------------------------------~----~~~~~~~~la~~~~~~g~~ 128 (342)
.|++++|.+.+.+..+.. | +++..+..++..+...|++
T Consensus 200 ~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~ 279 (409)
T TIGR00540 200 SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDH 279 (409)
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCCh
Confidence 888888888887766431 1 1334455666677777777
Q ss_pred HHHHHHHHHHhccCCCCchHH--HHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh--HHHHHHHHHHHHhcChhHHHHHHH
Q psy3701 129 DQAMAAYFNAFNLFKGCHLPA--LYVGLECGLTNNARLASKFFDLALSIAHEDP--FVIHEMGVIAYQNHNYTVAENCFM 204 (342)
Q Consensus 129 ~~A~~~~~~al~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~ 204 (342)
++|++.++++++..|++.... ..........++.+.+++.++++++..|+++ .....+|.+++..|++++|.++|+
T Consensus 280 ~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 280 DSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 777777777777777765432 2223333445677777777777777777777 777777888888888888888877
Q ss_pred --HHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701 205 --EALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 279 (342)
Q Consensus 205 --~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 279 (342)
++++..|++ ..+..+|.++.+.|+.++|.+++++++..
T Consensus 360 ~a~a~~~~p~~-------------------------------------~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 360 NVAACKEQLDA-------------------------------------NDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HhHHhhcCCCH-------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 466666665 45669999999999999999999998754
No 58
>KOG0495|consensus
Probab=99.85 E-value=1.2e-17 Score=140.74 Aligned_cols=295 Identities=16% Similarity=0.096 Sum_probs=245.3
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYY 88 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 88 (342)
....|..-++.+.+.+.++-|...|..++ .+....++++++..-|.....|...+.-+
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 34456667778888888888888887776 26667888899999999999999999999
Q ss_pred HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHH
Q psy3701 89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKF 168 (342)
Q Consensus 89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 168 (342)
+..|+...|...+.++++.+|++.+.|+.-..+.....+++.|..++.++....|+ ..+|+.-+.....+++.++|++.
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987776 67788888888899999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHH---HHhhhhHHHHHHHhch-hc
Q psy3701 169 FDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLL---NNLGHKAEDKVKQLGG-EI 244 (342)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~ 244 (342)
++++++..|+.+..|..+|.++..+++.+.|...|...++..|... ..|..+. ...+ ....+...++. ..
T Consensus 674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-----pLWllLakleEk~~-~~~rAR~ildrarl 747 (913)
T KOG0495|consen 674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-----PLWLLLAKLEEKDG-QLVRARSILDRARL 747 (913)
T ss_pred HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc-----hHHHHHHHHHHHhc-chhhHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999884 2222111 1111 11122233333 45
Q ss_pred cCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc------------------------------hHHHHHHHHHH
Q psy3701 245 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------------------------------ASTFCCIGYIQ 294 (342)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------~~~~~~l~~~~ 294 (342)
.+|.....|.....+-.+.|+.+.|.....+|++..|++ +.++...|..+
T Consensus 748 kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lf 827 (913)
T KOG0495|consen 748 KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLF 827 (913)
T ss_pred cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHH
Confidence 678888899999999999999999999999999877764 34557788999
Q ss_pred HHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 295 ALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 295 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
....++++|+++|.+++..+|++.++|..+-....+.+
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 99999999999999999999999999887765554444
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.85 E-value=3e-18 Score=146.07 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=145.2
Q ss_pred HHhHHHHhhccHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC
Q psy3701 37 LKGRVYEALENRALAADCYKGAL-----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR 93 (342)
Q Consensus 37 ~~g~~~~~~~~~~~A~~~~~~~~-----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 93 (342)
..+......|+++.|...+.++. +++|...++++.+.+|+++.++..++.+|...|+
T Consensus 123 laA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd 202 (398)
T PRK10747 123 LAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA 202 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 34666688999999999888864 2555666666666677777777777777777777
Q ss_pred hHHHHHHHHHHhhcC------------------------------------------CCcHHHHHHhhhHHHhhccHHHH
Q psy3701 94 SDPARRFLGKATSLD------------------------------------------KLFLPAWLMYGHSFAVENEHDQA 131 (342)
Q Consensus 94 ~~~A~~~~~~a~~~~------------------------------------------~~~~~~~~~la~~~~~~g~~~~A 131 (342)
+++|+..+.+..+.. |+++.+...++..+...|+.++|
T Consensus 203 w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 203 WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHH
Confidence 777775555544221 12333445556666666777777
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhh
Q psy3701 132 MAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVK 211 (342)
Q Consensus 132 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 211 (342)
...++++++..| ++......+. ...++.+++++.+++.++..|+++..+..+|.++...+++++|...|+++++..|
T Consensus 283 ~~~L~~~l~~~~-~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 283 QQIILDGLKRQY-DERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHHHhcCC-CHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 777776666333 3322222222 2337777777777777777888888888888888888888888888888888888
Q ss_pred hcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701 212 QLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 280 (342)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 280 (342)
++ ..+..++.++...|+.++|..+|++++...
T Consensus 360 ~~-------------------------------------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 360 DA-------------------------------------YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CH-------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 77 467789999999999999999999998754
No 60
>KOG0624|consensus
Probab=99.84 E-value=8.2e-19 Score=137.05 Aligned_cols=215 Identities=13% Similarity=0.039 Sum_probs=197.2
Q ss_pred hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHH
Q psy3701 72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY 151 (342)
Q Consensus 72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 151 (342)
..+|.+.+-.+.+|.-++..|++..|+..|..|++.+|++..+++..|.+|..+|+..-|+..+.+++++.|+...+...
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 34677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHhhCCCChHH---------------HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcc
Q psy3701 152 VGLECGLTNNARLASKFFDLALSIAHEDPFV---------------IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGE 216 (342)
Q Consensus 152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 216 (342)
.|.++.++|.+++|..-|+.++..+|++... +......+...|++..|+......+++.|-+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd--- 188 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD--- 188 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch---
Confidence 9999999999999999999999999965322 2233444566789999999999999999988
Q ss_pred ccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH
Q psy3701 217 IIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL 296 (342)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 296 (342)
+..+...+.||...|+...|+.-++.+-++..++.+.++.++.+++.
T Consensus 189 ---------------------------------a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 189 ---------------------------------ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT 235 (504)
T ss_pred ---------------------------------hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHhcccCchhHHh
Q psy3701 297 TGDLDSAVNYFHKTMALKRDDSFATT 322 (342)
Q Consensus 297 ~g~~~~A~~~~~~al~~~p~~~~~~~ 322 (342)
.|+.+.++...+.++.++|++...+.
T Consensus 236 vgd~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred hhhHHHHHHHHHHHHccCcchhhHHH
Confidence 99999999999999999999875443
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=1.6e-17 Score=128.81 Aligned_cols=249 Identities=14% Similarity=0.097 Sum_probs=213.8
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701 30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS-----AIAWYAVGCYYYLIGRSDPARRFLGKA 104 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a 104 (342)
...+..+.+|+.+...|..++|+.+.+.- -..|+- ..+...+|.-|...|-++.|...|...
T Consensus 67 ~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L-------------~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L 133 (389)
T COG2956 67 ETFEAHLTLGNLFRSRGEVDRAIRIHQTL-------------LESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQL 133 (389)
T ss_pred hhhHHHHHHHHHHHhcchHHHHHHHHHHH-------------hcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 34566778999999999999999999883 445543 457889999999999999999999999
Q ss_pred hhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc-----hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC
Q psy3701 105 TSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH-----LPALYVGLECGLTNNARLASKFFDLALSIAHED 179 (342)
Q Consensus 105 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 179 (342)
.+...--..+...+..+|....++++|++.-++..++.+... ..+..++..+....+.+.|...+.++++.+|++
T Consensus 134 ~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c 213 (389)
T COG2956 134 VDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC 213 (389)
T ss_pred hcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc
Confidence 887666678999999999999999999999999999988743 234457888888899999999999999999999
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV 259 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (342)
..+-..+|.+....|+|+.|++.++.+++.+|... +.+...+..+
T Consensus 214 vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl-----------------------------------~evl~~L~~~ 258 (389)
T COG2956 214 VRASIILGRVELAKGDYQKAVEALERVLEQNPEYL-----------------------------------SEVLEMLYEC 258 (389)
T ss_pred eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH-----------------------------------HHHHHHHHHH
Confidence 99999999999999999999999999999999884 6788899999
Q ss_pred HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701 260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327 (342)
Q Consensus 260 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 327 (342)
|...|+.++.+.++.++.+..++. .+-..++..-....-.+.|..+..+-+...|+-...+..+..-
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 999999999999999999988754 4455577777777778889999888888888766555554433
No 62
>KOG4162|consensus
Probab=99.84 E-value=1.4e-17 Score=142.88 Aligned_cols=257 Identities=15% Similarity=0.063 Sum_probs=170.0
Q ss_pred cHHHHHHHHHHHHHhC-----------ChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC-CC
Q psy3701 77 SAIAWYAVGCYYYLIG-----------RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF-KG 144 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~ 144 (342)
.+.++..+|.+|-.+- ...++++.++++++.+|+|+.+.+.++.-|..+++.+.|....+++++.+ .+
T Consensus 432 ~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~ 511 (799)
T KOG4162|consen 432 KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGD 511 (799)
T ss_pred hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc
Confidence 3556666666664321 24567777777777777777777777777777777777777777777773 34
Q ss_pred CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC----------
Q psy3701 145 CHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG---------- 214 (342)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---------- 214 (342)
++.+|..++.++...+++.+|+.+.+.++.-.|+|.........+-...++.++|+......+.......
T Consensus 512 ~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~ 591 (799)
T KOG4162|consen 512 SAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGK 591 (799)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhh
Confidence 5666777777777777777777777777777766555444444444444555555544444433322000
Q ss_pred ------------------------------------c-----------cccccchh---------hHHHHhhhhHHHHH-
Q psy3701 215 ------------------------------------G-----------EIIADKWE---------PLLNNLGHKAEDKV- 237 (342)
Q Consensus 215 ------------------------------------~-----------~~~~~~~~---------~~~~~~~~~~~~~~- 237 (342)
+ ......|. ...+.......+..
T Consensus 592 ~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~ 671 (799)
T KOG4162|consen 592 LLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARS 671 (799)
T ss_pred hhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 0 00011111 11111111222222
Q ss_pred HHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHH--HHHHHHhccc
Q psy3701 238 KQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVN--YFHKTMALKR 315 (342)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p 315 (342)
-........+..+..|+..|.++...|+..+|.+.|..++.++|+++.+...+|.++.+.|+..-|.. .+..+++++|
T Consensus 672 CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 672 CLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 22222345566678889999999999999999999999999999999999999999999998888777 8999999999
Q ss_pred CchhHHhHHHHHHHHhhh
Q psy3701 316 DDSFATTMLSYVIEQLIE 333 (342)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~ 333 (342)
.++++|+.||.+++..++
T Consensus 752 ~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred CCHHHHHHHHHHHHHccc
Confidence 999999999998887764
No 63
>KOG1840|consensus
Probab=99.83 E-value=2.3e-18 Score=146.38 Aligned_cols=233 Identities=15% Similarity=0.127 Sum_probs=190.5
Q ss_pred cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc--------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC--
Q psy3701 73 LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL--------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF-- 142 (342)
Q Consensus 73 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 142 (342)
.+|.-..+...+|..|...|++++|+..++++++. .|.-......+|.+|..++++++|+..|++++.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666778888999999999999999999999998 45545556679999999999999999999999873
Q ss_pred ------CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCC--------CChHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q psy3701 143 ------KGCHLPALYVGLECGLTNNARLASKFFDLALSIAH--------EDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208 (342)
Q Consensus 143 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 208 (342)
|....++.+++..|...|++++|..++++++++.. .-...+..++.++..++++++|+.+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 44456778899999999999999999999987642 2234578889999999999999999999998
Q ss_pred hhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC--------
Q psy3701 209 KVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA-------- 280 (342)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------- 280 (342)
+..+.+ ....+..+..+.++|.+|..+|++++|.+++++++++.
T Consensus 354 i~~~~~----------------------------g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 354 IYLDAP----------------------------GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHhhc----------------------------cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 866432 11233446789999999999999999999999999874
Q ss_pred CCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc----ccCc---hhHHhHHHHHHHHhhh
Q psy3701 281 PMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL----KRDD---SFATTMLSYVIEQLIE 333 (342)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~---~~~~~~l~~~~~~~~~ 333 (342)
+.....+..+|..+.+.+++.+|...|.++..+ .|++ ...+.+|+.+|..++.
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 223456788999999999999999999988765 3444 4567778888776653
No 64
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.83 E-value=5.6e-18 Score=134.86 Aligned_cols=190 Identities=15% Similarity=-0.010 Sum_probs=148.3
Q ss_pred CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH---HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch---
Q psy3701 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL---PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL--- 147 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--- 147 (342)
++..+..++.+|..++..|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 455688899999999999999999999999999888765 57788999999999999999999999999888776
Q ss_pred HHHHHHHHHhhh--------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccc
Q psy3701 148 PALYVGLECGLT--------NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIA 219 (342)
Q Consensus 148 ~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 219 (342)
+++.+|.++... |++++|++.+++++..+|++...+..+..+.... ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~-----------------~~~------ 165 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR-----------------NRL------ 165 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-----------------HHH------
Confidence 577778887765 6677777777777777777655443222111100 000
Q ss_pred cchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHH
Q psy3701 220 DKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK---ASTFCCIGYIQAL 296 (342)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~ 296 (342)
......+|..+...|++.+|+..+++++...|+. +.+++.+|.++..
T Consensus 166 ------------------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 166 ------------------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK 215 (235)
T ss_pred ------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence 1234568889999999999999999999997764 5799999999999
Q ss_pred hCChHHHHHHHHHHHhcccC
Q psy3701 297 TGDLDSAVNYFHKTMALKRD 316 (342)
Q Consensus 297 ~g~~~~A~~~~~~al~~~p~ 316 (342)
+|++++|..+++......|+
T Consensus 216 lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 216 LGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred cCCHHHHHHHHHHHHhhCCC
Confidence 99999999998888776663
No 65
>KOG2003|consensus
Probab=99.83 E-value=2.7e-18 Score=139.13 Aligned_cols=246 Identities=15% Similarity=0.066 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc-HHHHHHhhhHHHhh--ccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF-LPAWLMYGHSFAVE--NEHDQAMAAYFNAFNLFKGCHLPALYVGL 154 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 154 (342)
.+.-.+.+..+.+.|+++.|++.++-.-..+... ..+-.++..+++.+ .++.+|..+...++.++..++.+..+.|.
T Consensus 419 ~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn 498 (840)
T KOG2003|consen 419 IDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGN 498 (840)
T ss_pred hhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCc
Confidence 4455677888999999999999887655554433 23445565555553 47889999999999999999999999999
Q ss_pred HHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE 234 (342)
Q Consensus 155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (342)
+-+..|++++|.+.|++++..+.....+++++|..+..+|+.++|+.+|-+.-.+-.++. .++..+...++
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~---------evl~qianiye 569 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA---------EVLVQIANIYE 569 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH---------HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998766655552 22222222111
Q ss_pred ------HHHHHh-chhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHH
Q psy3701 235 ------DKVKQL-GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYF 307 (342)
Q Consensus 235 ------~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 307 (342)
.+++.+ .....-|..+.++..+|.+|-+.|+-.+|..++-...+..|.+.++.-.+|..|....-+++|+.+|
T Consensus 570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 222222 2234556667788888888888888888888888888888888888888888888888888889999
Q ss_pred HHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 308 HKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 308 ~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
+++--+.|+...-..+++.|+.+.+
T Consensus 650 ekaaliqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 650 EKAALIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHhcCccHHHHHHHHHHHHHhcc
Confidence 9888888887776677777766543
No 66
>KOG1156|consensus
Probab=99.82 E-value=5.3e-18 Score=142.68 Aligned_cols=255 Identities=14% Similarity=0.080 Sum_probs=197.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhh
Q psy3701 46 ENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE 125 (342)
Q Consensus 46 ~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 125 (342)
+-|.+++++|+...+.+.+..++.+++..|++++++...|..+...|+-++|..+...++..++...-.|..+|.++...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 45778888999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHH
Q psy3701 126 NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFME 205 (342)
Q Consensus 126 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 205 (342)
.+|++|+++|+.|+.+.|++...+..++....++++++.....-.+.++..|.....|...+..+...|++..|....+.
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchH
Q psy3701 206 ALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 285 (342)
Q Consensus 206 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 285 (342)
..+.....+. .... ....+......+....|.+++|++.+.+--..--+...
T Consensus 169 f~~t~~~~~s---~~~~-------------------------e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla 220 (700)
T KOG1156|consen 169 FEKTQNTSPS---KEDY-------------------------EHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLA 220 (700)
T ss_pred HHHhhccCCC---HHHH-------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHH
Confidence 8776532210 0000 00123333344444555555555544432222222223
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701 286 TFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI 328 (342)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 328 (342)
.....+.++.++|+.++|...|...+..+|++..-+..+..++
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKAL 263 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHH
Confidence 3344555566666666666666666666666655554444444
No 67
>KOG1174|consensus
Probab=99.81 E-value=6.4e-17 Score=129.49 Aligned_cols=254 Identities=9% Similarity=-0.040 Sum_probs=178.5
Q ss_pred HhcCCCcHHHHHH---HHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch
Q psy3701 71 VDLYPDSAIAWYA---VGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL 147 (342)
Q Consensus 71 ~~~~p~~~~~~~~---l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 147 (342)
+...|..+..|.. .+.++-....+..+..++-.-....|++......+|.++...|++++|+-.|+++..++|....
T Consensus 188 ~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~ 267 (564)
T KOG1174|consen 188 ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE 267 (564)
T ss_pred eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh
Confidence 3556665554433 3444444445555666677777889999999999999999999999999999999999887543
Q ss_pred HHHH----------------------------------HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q psy3701 148 PALY----------------------------------VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN 193 (342)
Q Consensus 148 ~~~~----------------------------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (342)
+.-. -+...+..+++..|+.+-+++++.+|.+...+...|.++...
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL 347 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc
Confidence 3322 233455567888999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHHH-HHH-HHhhhHHHHH
Q psy3701 194 HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNLG-HVN-RKLKKYEEAL 270 (342)
Q Consensus 194 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~-~~~g~~~~A~ 270 (342)
|+.++|+-.|+.+..+.|..-... ......+-..+... ++...... ....+..+.++..+| .++ ..-.--++|.
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y--~GL~hsYLA~~~~k-EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIY--RGLFHSYLAQKRFK-EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHH--HHHHHHHHhhchHH-HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999999988762000 00011111111111 11111111 112233344555554 222 2333457899
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701 271 EFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI 328 (342)
Q Consensus 271 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 328 (342)
+++++++.+.|....+-..++.++...|++++++..+++.+...||+. .+..|+.++
T Consensus 425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~ 481 (564)
T KOG1174|consen 425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIM 481 (564)
T ss_pred HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999765 344444444
No 68
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.80 E-value=4.3e-18 Score=123.39 Aligned_cols=127 Identities=17% Similarity=0.151 Sum_probs=104.9
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhcc
Q psy3701 166 SKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII 245 (342)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-------------------------------- 57 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-------------------------------- 57 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--------------------------------
Confidence 35677788877764 5567888888888888888888888888887
Q ss_pred CCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701 246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS 325 (342)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 325 (342)
..++..+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|++++++.|+++..+...+
T Consensus 58 ----~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 58 ----WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred ----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 5788888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHHHHh
Q psy3701 326 YVIEQL 331 (342)
Q Consensus 326 ~~~~~~ 331 (342)
.+...+
T Consensus 134 ~~~~~l 139 (144)
T PRK15359 134 NAQIMV 139 (144)
T ss_pred HHHHHH
Confidence 776554
No 69
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=5e-16 Score=141.19 Aligned_cols=272 Identities=7% Similarity=-0.148 Sum_probs=206.1
Q ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHH
Q psy3701 43 EALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF 122 (342)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 122 (342)
.-...|++|+..++++.+..|+..++++++.+|.++.....+..++...|+.++|+.++++++.-.|........+|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 34577999999999999999999999999999999655448888889999999999999999944444455555558899
Q ss_pred HhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHH
Q psy3701 123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENC 202 (342)
Q Consensus 123 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 202 (342)
...|++++|++.|+++++.+|+++.++..++..+...++.++|++.++++...+|.+... ..++.++...++..+|+..
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986554 5666677667888789999
Q ss_pred HHHHHHhhhhcCccccccchh-----------------------------h---HHHHh--h-----------hhHHHHH
Q psy3701 203 FMEALSKVKQLGGEIIADKWE-----------------------------P---LLNNL--G-----------HKAEDKV 237 (342)
Q Consensus 203 ~~~al~~~~~~~~~~~~~~~~-----------------------------~---~~~~~--~-----------~~~~~~~ 237 (342)
++++++.+|++.......... . +...+ + ...+.++
T Consensus 192 ~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 192 SSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 999999999886111000000 0 00000 0 0111222
Q ss_pred HHhchh----ccCCC----ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701 238 KQLGGE----IIADK----WEPLLNNLGHVNRKLKKYEEALEFHKQALVVA-PMKASTFCCIGYIQALTGDLDSAVNYFH 308 (342)
Q Consensus 238 ~~~~~~----~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 308 (342)
..+... ...|. ...+....-.++...|++.+++..|+...... |--..+....|..|...+++++|...|+
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 222221 12222 23344455566788899999999999876544 2234577789999999999999999999
Q ss_pred HHHhccc
Q psy3701 309 KTMALKR 315 (342)
Q Consensus 309 ~al~~~p 315 (342)
+++.-.|
T Consensus 352 ~~~~~~~ 358 (822)
T PRK14574 352 SLYYSDG 358 (822)
T ss_pred HHhhccc
Confidence 9988653
No 70
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.79 E-value=9.8e-18 Score=121.53 Aligned_cols=125 Identities=16% Similarity=0.119 Sum_probs=115.6
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC
Q psy3701 66 LAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC 145 (342)
Q Consensus 66 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 145 (342)
+++++++.+|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|++
T Consensus 15 ~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 15 ILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 344457888875 66789999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q psy3701 146 HLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN 193 (342)
Q Consensus 146 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (342)
+.+++.+|.++...|++++|+..|++++...|+++..+..+|.+....
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888876654
No 71
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.79 E-value=2.2e-17 Score=131.42 Aligned_cols=173 Identities=13% Similarity=0.049 Sum_probs=151.8
Q ss_pred hhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701 27 QSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSA---IAWYAVGCYYYLIGRSDPARRFLGK 103 (342)
Q Consensus 27 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~ 103 (342)
........++.+|..+...|++++|+..|++. +..+|+++ .+++.+|.++...|++++|+..+++
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~------------~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~ 95 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEAL------------ESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADR 95 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34556778889999999999999999999995 57788765 6889999999999999999999999
Q ss_pred HhhcCCCcHH---HHHHhhhHHHhh--------ccHHHHHHHHHHHhccCCCCchHH-----------------HHHHHH
Q psy3701 104 ATSLDKLFLP---AWLMYGHSFAVE--------NEHDQAMAAYFNAFNLFKGCHLPA-----------------LYVGLE 155 (342)
Q Consensus 104 a~~~~~~~~~---~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~-----------------~~l~~~ 155 (342)
+++.+|+++. +++.+|.++... |++++|++.+++++..+|++..++ ..+|..
T Consensus 96 ~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 96 FIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred HHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998776 689999999876 899999999999999999976442 356788
Q ss_pred HhhhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhh
Q psy3701 156 CGLTNNARLASKFFDLALSIAHED---PFVIHEMGVIAYQNHNYTVAENCFMEALSKVK 211 (342)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 211 (342)
+...|++.+|+..+++++...|++ +.++..+|.++...|++++|..+++......|
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999997765 57899999999999999999999888766554
No 72
>KOG4162|consensus
Probab=99.78 E-value=1.8e-16 Score=136.07 Aligned_cols=223 Identities=17% Similarity=0.163 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc-CCCcHHHHHHhhhHHHhhcc
Q psy3701 49 ALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL-DKLFLPAWLMYGHSFAVENE 127 (342)
Q Consensus 49 ~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~ 127 (342)
.+++..++++ ++.+|+|+.+.+.++.-|...++.+.|....++++.+ ..+++.+|..++.++...++
T Consensus 461 ~kslqale~a------------v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 461 KKSLQALEEA------------VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR 528 (799)
T ss_pred HHHHHHHHHH------------HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 3456666664 4666666666666666666666666666666666666 33455666666666666666
Q ss_pred HHHHHHHHHHHhccCCC---------------------------------------------------------------
Q psy3701 128 HDQAMAAYFNAFNLFKG--------------------------------------------------------------- 144 (342)
Q Consensus 128 ~~~A~~~~~~al~~~~~--------------------------------------------------------------- 144 (342)
+.+|+.....++.-.|.
T Consensus 529 ~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~ 608 (799)
T KOG4162|consen 529 LKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTD 608 (799)
T ss_pred hHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccc
Confidence 66666655555433111
Q ss_pred ---------------------------------C-------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHH
Q psy3701 145 ---------------------------------C-------HLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIH 184 (342)
Q Consensus 145 ---------------------------------~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 184 (342)
. ...|...+..+...++.++|..++.++-.+.|..+.+|+
T Consensus 609 a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~ 688 (799)
T KOG4162|consen 609 AISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYY 688 (799)
T ss_pred cchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHH
Confidence 1 122334566677777888888888888888888888888
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhh
Q psy3701 185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK 264 (342)
Q Consensus 185 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (342)
..|.++...|++.+|...|..++.++|++ +.....+|.++.+.|
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al~ldP~h------------------------------------v~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVALALDPDH------------------------------------VPSMTALAELLLELG 732 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHhcCCCC------------------------------------cHHHHHHHHHHHHhC
Confidence 88888888888888888888888888888 589999999999999
Q ss_pred hHHHHHH--HHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701 265 KYEEALE--FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF 319 (342)
Q Consensus 265 ~~~~A~~--~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 319 (342)
+..-|.. .+..+++++|.++++|+.+|.++.+.|+.++|.++|+.++++.+.+|.
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 8888877 999999999999999999999999999999999999999999988874
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.78 E-value=8.4e-17 Score=136.46 Aligned_cols=205 Identities=13% Similarity=0.049 Sum_probs=170.3
Q ss_pred CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHH
Q psy3701 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPAL 150 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 150 (342)
+|+.+.++..+|.++...|+.+.+...+.++.+..|.+ .+.....+.++...|++++|...++++++..|.+..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 79999999999999999999999999998888777654 456777888999999999999999999999999887666
Q ss_pred HHHHHHhhh----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHH
Q psy3701 151 YVGLECGLT----NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLL 226 (342)
Q Consensus 151 ~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 226 (342)
. +..+... +....+.+.+.......|........+|.++...|++++|+..++++++..|++
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~------------- 147 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD------------- 147 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------------
Confidence 4 4444444 444455555544445667777788889999999999999999999999999988
Q ss_pred HHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch----HHHHHHHHHHHHhCChHH
Q psy3701 227 NNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA----STFCCIGYIQALTGDLDS 302 (342)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~g~~~~ 302 (342)
..++..+|.++...|++++|+.++++++...|..+ ..+..++.++...|++++
T Consensus 148 -----------------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 148 -----------------------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred -----------------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 47889999999999999999999999999876433 346679999999999999
Q ss_pred HHHHHHHHHhccc
Q psy3701 303 AVNYFHKTMALKR 315 (342)
Q Consensus 303 A~~~~~~al~~~p 315 (342)
|+..+++++...|
T Consensus 205 A~~~~~~~~~~~~ 217 (355)
T cd05804 205 ALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHhcccc
Confidence 9999999987766
No 74
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.77 E-value=1.4e-15 Score=139.55 Aligned_cols=275 Identities=9% Similarity=-0.028 Sum_probs=156.3
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHH-------------------HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhC
Q psy3701 33 ALLLLKGRVYEALENRALAADCYKGAL-------------------LADLFKLAHELVDLY-PDSAIAWYAVGCYYYLIG 92 (342)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~-------------------~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 92 (342)
.++..+...|.+.|++++|...|++.. .++|+.+++++.... ..+..++..+...+...|
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 344456677778888888888887632 134444444443321 113344555555555555
Q ss_pred ChHHHHHHHHHHhhcC-CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHH
Q psy3701 93 RSDPARRFLGKATSLD-KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDL 171 (342)
Q Consensus 93 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 171 (342)
++++|.+.+..+++.. +.+...+..+...|.+.|++++|...|++..+ .+..+|..+...|.+.|+.++|++.|++
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555555443 23344455555556666666666666655543 1334555556666666666666666666
Q ss_pred HHhh--CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCC
Q psy3701 172 ALSI--AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKW 249 (342)
Q Consensus 172 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (342)
..+. .| +...+..+...+...|+.++|..+|+...+..+-.+...........+...|. .+++...+......|.
T Consensus 417 M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~-~~eA~~~~~~~~~~p~- 493 (697)
T PLN03081 417 MIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL-LDEAYAMIRRAPFKPT- 493 (697)
T ss_pred HHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC-HHHHHHHHHHCCCCCC-
Confidence 5542 22 33445555555556666666666666655432222211111111122222222 3344444444444443
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
...|..+...+...|+.+.|...+++.++..|++...+..++.+|.+.|++++|.+.++...+.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3567788888888888888888888888888887778888888888888888888888776543
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.77 E-value=1.1e-15 Score=129.76 Aligned_cols=270 Identities=10% Similarity=-0.047 Sum_probs=193.3
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCh----HHHHHHHHHHhhc
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS----DPARRFLGKATSL 107 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~----~~A~~~~~~a~~~ 107 (342)
.+..+..|..+...|++++|...+++. +..+|++..++.. +..++..|++ ..+...+......
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~------------l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQL------------LDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPE 109 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------------HHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcC
Confidence 445667788888889999998888885 5889999888775 6566555544 4444444444456
Q ss_pred CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh----HHH
Q psy3701 108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP----FVI 183 (342)
Q Consensus 108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~ 183 (342)
+|........+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..+++++...|.++ ..+
T Consensus 110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~ 189 (355)
T cd05804 110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNW 189 (355)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence 6777778888999999999999999999999999999999999999999999999999999999999887543 346
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccc-cc-hh-hHHHHhh-----hhHHHHHHHhchhccCCCChHHHHH
Q psy3701 184 HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIA-DK-WE-PLLNNLG-----HKAEDKVKQLGGEIIADKWEPLLNN 255 (342)
Q Consensus 184 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~-~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (342)
..+|.++...|++++|+..+++++...|........ .. +. ......+ ...+............+........
T Consensus 190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 269 (355)
T cd05804 190 WHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLH 269 (355)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHH
Confidence 689999999999999999999997665522100000 00 00 0000111 0011111111111011222233346
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCC---------chHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701 256 LGHVNRKLKKYEEALEFHKQALVVAPM---------KASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 256 l~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 314 (342)
.+.++...|+.++|...++........ ........+.++...|++++|.+.+..++.+.
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 788888999999999999887654322 23556778899999999999999999999765
No 76
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.77 E-value=6.9e-15 Score=137.40 Aligned_cols=297 Identities=11% Similarity=0.019 Sum_probs=205.7
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHH-----------------------HHHHHHHHHHHHh
Q psy3701 16 GVSFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGAL-----------------------LADLFKLAHELVD 72 (342)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-----------------------~~~a~~~~~~~~~ 72 (342)
+..++..|....-.++..++..+-..+.+.|++++|..+|++.. .++|+.++..+..
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33444444432222334444445555555566666665555543 1455555555544
Q ss_pred cC-CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhh----cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC-CCCc
Q psy3701 73 LY-PDSAIAWYAVGCYYYLIGRSDPARRFLGKATS----LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF-KGCH 146 (342)
Q Consensus 73 ~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~ 146 (342)
.. ..+..+|..+...+.+.|++++|.+.|.+... +.|+ ...|..+...|.+.|++++|.+.|+++.+.. +.+.
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~ 614 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCh
Confidence 32 22467888999999999999999999998865 3444 5678888888999999999999999998876 3456
Q ss_pred hHHHHHHHHHhhhCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhh
Q psy3701 147 LPALYVGLECGLTNNARLASKFFDLALSI--AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEP 224 (342)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 224 (342)
..|..+...|.+.|++++|.++|+++... .| +...+..+...+.+.|++++|...++++.+...... .........
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd-~~tynsLI~ 692 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG-TVSYSSLMG 692 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Confidence 77888888899999999999999988875 34 466788888899999999999999999887543221 111222222
Q ss_pred HHHHhhhhHHHHHHHhchh---ccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHhCCh
Q psy3701 225 LLNNLGHKAEDKVKQLGGE---IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA-PMKASTFCCIGYIQALTGDL 300 (342)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 300 (342)
.+...++ .+++...+... ...| ....|..+...|.+.|++++|++.|+++.... ..+...+..+...+.+.|++
T Consensus 693 ay~k~G~-~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 693 ACSNAKN-WKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHhCCC-HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 3333332 23334444432 2233 35689999999999999999999999987653 23556777788899999999
Q ss_pred HHHHHHHHHHHhc--ccCc
Q psy3701 301 DSAVNYFHKTMAL--KRDD 317 (342)
Q Consensus 301 ~~A~~~~~~al~~--~p~~ 317 (342)
++|...+.++.+. .|+.
T Consensus 771 e~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCH
Confidence 9999999999875 4543
No 77
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.76 E-value=2.1e-16 Score=120.69 Aligned_cols=130 Identities=12% Similarity=0.124 Sum_probs=95.5
Q ss_pred hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHH
Q psy3701 159 TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVK 238 (342)
Q Consensus 159 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (342)
.++.++++..++++++.+|++...|..+|.++...|++++|+..|++++++.|++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------------------------- 106 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN------------------------- 106 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------------
Confidence 4566777777777777777777777777777777777777777777777777777
Q ss_pred HhchhccCCCChHHHHHHHHHH-HHhhh--HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701 239 QLGGEIIADKWEPLLNNLGHVN-RKLKK--YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR 315 (342)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 315 (342)
..++..+|.++ ...|+ +++|...++++++.+|+++.++..+|..+...|++++|+.+++++++..|
T Consensus 107 -----------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 107 -----------AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred -----------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 46777777764 55566 47777777777777777777777777777777777777777777777776
Q ss_pred CchhHHhHH
Q psy3701 316 DDSFATTML 324 (342)
Q Consensus 316 ~~~~~~~~l 324 (342)
.+..-...+
T Consensus 176 ~~~~r~~~i 184 (198)
T PRK10370 176 PRVNRTQLV 184 (198)
T ss_pred CCccHHHHH
Confidence 655444444
No 78
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.76 E-value=1.1e-14 Score=136.04 Aligned_cols=285 Identities=12% Similarity=0.025 Sum_probs=219.7
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhcCC-CcHHHHHHHH
Q psy3701 30 MKSALLLLKGRVYEALENRALAADCYKGAL-----------------------LADLFKLAHELVDLYP-DSAIAWYAVG 85 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-----------------------~~~a~~~~~~~~~~~p-~~~~~~~~l~ 85 (342)
++...+..+-..+...|+++.|..+|.... .++|..+++++..... .+..+|..+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345566666777889999999999998765 3788889998877643 3688999999
Q ss_pred HHHHHhCChHHHHHHHHHHhhc--CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc----CCCCchHHHHHHHHHhhh
Q psy3701 86 CYYYLIGRSDPARRFLGKATSL--DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL----FKGCHLPALYVGLECGLT 159 (342)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~ 159 (342)
..|.+.|++++|...|++.... .| +...|..+...+...|++++|.+.+.++... .|+ ...+..+...|.+.
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~ 592 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANA 592 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHC
Confidence 9999999999999999998764 34 4678999999999999999999999999753 343 56777788899999
Q ss_pred CCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHH
Q psy3701 160 NNARLASKFFDLALSIA-HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVK 238 (342)
Q Consensus 160 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (342)
|++++|.+.|+++.+.. +.+...|..+...|.+.|++++|+..|++..+..-.. +..........+...+. .+++..
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~-~eeA~~ 670 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGD-LDKAFE 670 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCC-HHHHHH
Confidence 99999999999999876 4577899999999999999999999999988753221 11111122222222222 233333
Q ss_pred Hhchhc--cCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHhCChHHHHHHHHHHHh--c
Q psy3701 239 QLGGEI--IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA-PMKASTFCCIGYIQALTGDLDSAVNYFHKTMA--L 313 (342)
Q Consensus 239 ~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~ 313 (342)
.+.... ........+..+...|.+.|++++|.+.|+++.+.. ..+...|..+...|.+.|++++|.+.|+++.. +
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 333322 122335689999999999999999999999987642 23567899999999999999999999998875 4
Q ss_pred ccCch
Q psy3701 314 KRDDS 318 (342)
Q Consensus 314 ~p~~~ 318 (342)
.|+..
T Consensus 751 ~Pd~~ 755 (1060)
T PLN03218 751 CPNTI 755 (1060)
T ss_pred CCCHH
Confidence 56543
No 79
>KOG0550|consensus
Probab=99.75 E-value=4.8e-17 Score=130.14 Aligned_cols=231 Identities=15% Similarity=0.047 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 157 (342)
+.-....|..++...+|.+|+..+..|+.+.|++...|...+.+++..|++++|....++.+++.|.........+.++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 34456678888999999999999999999999999999999999999999999999999999998775555444444444
Q ss_pred ----------------------------------------------------hhCCHHHHHHHHHHHHhhCCCChHHHHH
Q psy3701 158 ----------------------------------------------------LTNNARLASKFFDLALSIAHEDPFVIHE 185 (342)
Q Consensus 158 ----------------------------------------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 185 (342)
..|++++|...--..+++++.+.++++.
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v 208 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV 208 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh
Confidence 4455555555555556666667777777
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701 186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK 265 (342)
Q Consensus 186 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (342)
.|.+++..++.+.|+..|++++.++|+.. ........+.....+..-|+-..+.|+
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~------------------------~sk~~~~~~k~le~~k~~gN~~fk~G~ 264 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLDPDHQ------------------------KSKSASMMPKKLEVKKERGNDAFKNGN 264 (486)
T ss_pred cccccccccchHHHHHHHhhhhccChhhh------------------------hHHhHhhhHHHHHHHHhhhhhHhhccc
Confidence 77777777777777777777777777762 111112233445788889999999999
Q ss_pred HHHHHHHHHHHHhhCCCch----HHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 266 YEEALEFHKQALVVAPMKA----STFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 266 ~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
+.+|.+.|..+|.++|++. ..+.+++.+..++|+..+|+..+..++.++|....++..-+.|...+.
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999864 568899999999999999999999999999999988888877765543
No 80
>KOG1127|consensus
Probab=99.75 E-value=1.6e-16 Score=139.71 Aligned_cols=301 Identities=14% Similarity=0.103 Sum_probs=205.0
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCc--HHHHHHHHHH
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDS--AIAWYAVGCY 87 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~--~~~~~~l~~~ 87 (342)
+..+-.+|.+|....+..+|..+|+++. ++.|..+....-+..|-. ...|..+|..
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 3455678999998889999999999986 244444433333333322 2345556777
Q ss_pred HHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHH
Q psy3701 88 YYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASK 167 (342)
Q Consensus 88 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 167 (342)
|...+++..|+..|+.++..+|.+.+.|..+|.+|...|++..|++.|.++..++|.+..+.+..+.+....|.|.+|+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhCCCChH-------HHHHHHHHHHHhcChhHHHHHHHHHHHhhh--------hc-------------------
Q psy3701 168 FFDLALSIAHEDPF-------VIHEMGVIAYQNHNYTVAENCFMEALSKVK--------QL------------------- 213 (342)
Q Consensus 168 ~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------~~------------------- 213 (342)
.+...+........ .+..++..+...|=+.+|..+++++++..- ++
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~ 731 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP 731 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence 77776654433222 222333333333333444444444332110 00
Q ss_pred --C--------------------cc----------------ccccchhhHHHHhhh----------hHHHHHHHhch-hc
Q psy3701 214 --G--------------------GE----------------IIADKWEPLLNNLGH----------KAEDKVKQLGG-EI 244 (342)
Q Consensus 214 --~--------------------~~----------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~ 244 (342)
+ .+ .....|..+-.+.-+ ....++..+.. ..
T Consensus 732 ~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~ 811 (1238)
T KOG1127|consen 732 SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS 811 (1238)
T ss_pred cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence 0 00 023355543333222 11233344443 34
Q ss_pred cCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701 245 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML 324 (342)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 324 (342)
........|..+|.+ ...|++.-|..+|-+.+...|.....|.++|.++.+..+++.|...|.++..++|.+...|...
T Consensus 812 L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~ 890 (1238)
T KOG1127|consen 812 LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGE 890 (1238)
T ss_pred HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHH
Confidence 455566799999988 6669999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhhh
Q psy3701 325 SYVIEQLIE 333 (342)
Q Consensus 325 ~~~~~~~~~ 333 (342)
+.+.+..+.
T Consensus 891 Ali~eavG~ 899 (1238)
T KOG1127|consen 891 ALIPEAVGR 899 (1238)
T ss_pred HHhHHHHHH
Confidence 877777653
No 81
>KOG1156|consensus
Probab=99.74 E-value=9.6e-15 Score=123.41 Aligned_cols=272 Identities=16% Similarity=0.101 Sum_probs=214.4
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH
Q psy3701 33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL 112 (342)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 112 (342)
+.+-.+|-.+...|+-++|.+..+.+ +..++.+..+|..+|.++....+|++|+++|+.|+.++|+|.
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~g------------lr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~ 109 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLG------------LRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL 109 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHH------------hccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH
Confidence 34446777777778888887777776 588999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC---CCCh---------
Q psy3701 113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIA---HEDP--------- 180 (342)
Q Consensus 113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~--------- 180 (342)
..|..++....++++++.....-.+.++..|.....|...+..+...|++..|....+...+.. |+..
T Consensus 110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L 189 (700)
T KOG1156|consen 110 QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL 189 (700)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888776544 2211
Q ss_pred ------------------------------HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701 181 ------------------------------FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG 230 (342)
Q Consensus 181 ------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 230 (342)
......|.+++.++++++|+..|...+..+|++- .........+|
T Consensus 190 y~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~-----~Yy~~l~~~lg 264 (700)
T KOG1156|consen 190 YQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL-----DYYEGLEKALG 264 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH-----HHHHHHHHHHH
Confidence 1133467888999999999999999999999874 10000000000
Q ss_pred --------------------------------------------h----------------------------hHHHHHH
Q psy3701 231 --------------------------------------------H----------------------------KAEDKVK 238 (342)
Q Consensus 231 --------------------------------------------~----------------------------~~~~~~~ 238 (342)
. ..+....
T Consensus 265 k~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt 344 (700)
T KOG1156|consen 265 KIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVT 344 (700)
T ss_pred HHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHH
Confidence 0 0000000
Q ss_pred Hhc----hh-----------ccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHH
Q psy3701 239 QLG----GE-----------IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSA 303 (342)
Q Consensus 239 ~~~----~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 303 (342)
.+. .. ..+......++.++..+-..|+++.|..+++.|+...|..++.+...|+++...|+.++|
T Consensus 345 ~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eA 424 (700)
T KOG1156|consen 345 SYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEA 424 (700)
T ss_pred HHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHH
Confidence 000 00 011112345566788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCchhHH
Q psy3701 304 VNYFHKTMALKRDDSFAT 321 (342)
Q Consensus 304 ~~~~~~al~~~p~~~~~~ 321 (342)
..++..+.+++-.|....
T Consensus 425 a~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 425 AAWLDEAQELDTADRAIN 442 (700)
T ss_pred HHHHHHHHhccchhHHHH
Confidence 999999999987666433
No 82
>KOG1130|consensus
Probab=99.74 E-value=1.8e-16 Score=127.02 Aligned_cols=282 Identities=19% Similarity=0.148 Sum_probs=209.1
Q ss_pred cchhhhhhhhh---hhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q psy3701 15 EGVSFFCWFSQ---LQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLI 91 (342)
Q Consensus 15 ~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 91 (342)
.|++||....+ ..-..-+.+|..+|++|...++|++|+++...-+ ...+.+...-..+.+--++|..+-..
T Consensus 35 aGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDl------tlar~lgdklGEAKssgNLGNtlKv~ 108 (639)
T KOG1130|consen 35 AGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDL------TLARLLGDKLGEAKSSGNLGNTLKVK 108 (639)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhH------HHHHHhcchhccccccccccchhhhh
Confidence 56677766442 2233557888899999999999999999877653 22233444445566778899999999
Q ss_pred CChHHHHHHHHHHhhcCCC------cHHHHHHhhhHHHhhcc--------------------HHHHHHHHHHHhccCCC-
Q psy3701 92 GRSDPARRFLGKATSLDKL------FLPAWLMYGHSFAVENE--------------------HDQAMAAYFNAFNLFKG- 144 (342)
Q Consensus 92 ~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~~~- 144 (342)
|.|++|+.+..+-+.+... ...+++++|.+|...|+ ++.|.++|..-+++...
T Consensus 109 G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l 188 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL 188 (639)
T ss_pred cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999887765332 25689999999988764 34556666655554322
Q ss_pred -----CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 145 -----CHLPALYVGLECGLTNNARLASKFFDLALSIAHE------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 145 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
...++-.+|..|+.+|+++.|+..-+.-+.+... ...++.++|.++...|+++.|+++|++.+.+...-
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel 268 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL 268 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh
Confidence 2345667889999999999999998877766533 23578899999999999999999999988776543
Q ss_pred CccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC------CchHHH
Q psy3701 214 GGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP------MKASTF 287 (342)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~ 287 (342)
. .....+...+.+|+.|.-..++++|+.++.+-+.+.. ....++
T Consensus 269 g------------------------------~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Rac 318 (639)
T KOG1130|consen 269 G------------------------------NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRAC 318 (639)
T ss_pred c------------------------------chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 2 1112256889999999999999999999999877643 345678
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcc-----cC-chhHHhHHHHHHHHhh
Q psy3701 288 CCIGYIQALTGDLDSAVNYFHKTMALK-----RD-DSFATTMLSYVIEQLI 332 (342)
Q Consensus 288 ~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~l~~~~~~~~ 332 (342)
+.+|..+...|..++|+.+.++.+++. |. ...+..+|......++
T Consensus 319 wSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG 369 (639)
T KOG1130|consen 319 WSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELG 369 (639)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhC
Confidence 899999999999999999988877652 22 2345566666555544
No 83
>KOG3060|consensus
Probab=99.72 E-value=1.1e-14 Score=109.45 Aligned_cols=190 Identities=14% Similarity=-0.008 Sum_probs=152.2
Q ss_pred CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG 153 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 153 (342)
.|+....+-....+....|+.+-|..++++.....|.+...-...|..+...|++++|+++|...++-+|.+...+...-
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 34445555666677777888888888888888878888888888888888888888888888888888888888877777
Q ss_pred HHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhH
Q psy3701 154 LECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA 233 (342)
Q Consensus 154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (342)
.+...+|+.-+|++.+...++..+.|.++|..++.+|...|+|++|.-++++.+-+.|.+
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n-------------------- 187 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN-------------------- 187 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc--------------------
Confidence 777778888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhchhccCCCChHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCC
Q psy3701 234 EDKVKQLGGEIIADKWEPLLNNLGHVNRKLK---KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGD 299 (342)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 299 (342)
+..+..+|.+++-+| ++.-|.++|.++++++|.+..+++.+-.+....-+
T Consensus 188 ----------------~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~ 240 (289)
T KOG3060|consen 188 ----------------PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ 240 (289)
T ss_pred ----------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence 367777888877665 56678888888888888777777776666554443
No 84
>KOG1127|consensus
Probab=99.72 E-value=3e-15 Score=131.89 Aligned_cols=236 Identities=18% Similarity=0.066 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhc
Q psy3701 61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFN 140 (342)
Q Consensus 61 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 140 (342)
..++..+-+.++.+|.-+.+|..+|.+|...-+...|.++|++|.++|+.+..++-..+..|....+++.|....-.+-+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 44555555567999999999999999999999999999999999999999999999999999999999999999877777
Q ss_pred cCCCC--chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccc
Q psy3701 141 LFKGC--HLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEII 218 (342)
Q Consensus 141 ~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 218 (342)
..|.. ...|..+|..|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s----- 629 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS----- 629 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-----
Confidence 77653 34566799999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchH-------HHHHHH
Q psy3701 219 ADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS-------TFCCIG 291 (342)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~l~ 291 (342)
.-..+..+.+...+|+|.+|+..+...+........ .+..++
T Consensus 630 -------------------------------~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~a 678 (1238)
T KOG1127|consen 630 -------------------------------KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDA 678 (1238)
T ss_pred -------------------------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 467788899999999999999999998876554444 444444
Q ss_pred HHHHHhCChHHHHHHHHHHHh-------cc-cCchhHHhHHHHHHHHhh
Q psy3701 292 YIQALTGDLDSAVNYFHKTMA-------LK-RDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 292 ~~~~~~g~~~~A~~~~~~al~-------~~-p~~~~~~~~l~~~~~~~~ 332 (342)
..+.-.|=...|..+++++++ .. -++...|..++...--+.
T Consensus 679 kd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~ 727 (1238)
T KOG1127|consen 679 KDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFS 727 (1238)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH
Confidence 444445555556666655544 23 455566666665554433
No 85
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.72 E-value=2e-15 Score=115.38 Aligned_cols=123 Identities=14% Similarity=0.132 Sum_probs=85.7
Q ss_pred hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH-hhhCC--HHHHHH
Q psy3701 91 IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC-GLTNN--ARLASK 167 (342)
Q Consensus 91 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~ 167 (342)
.++.++++..++++++.+|++++.|..+|.++...|++++|+..|++++++.|+++..+..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 455566667777777777777777777777777777777777777777777777777777777653 45555 467777
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 168 FFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
.++++++.+|+++.++..+|..++..|++++|+..++++++..|.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 7777777777777777777777777777777777777777766655
No 86
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.72 E-value=1.8e-14 Score=132.38 Aligned_cols=291 Identities=10% Similarity=-0.048 Sum_probs=195.2
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHH---------------------------------------------------
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGAL--------------------------------------------------- 59 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~--------------------------------------------------- 59 (342)
+...|..+...+...|++++|+..|++..
T Consensus 188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~ 267 (697)
T PLN03081 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267 (697)
T ss_pred CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHH
Confidence 44556667777788888888888887753
Q ss_pred -------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcC-CCcHHHHHHhhhHHHhhccHHHH
Q psy3701 60 -------LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLD-KLFLPAWLMYGHSFAVENEHDQA 131 (342)
Q Consensus 60 -------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 131 (342)
.++|..+++++ .+.+..+|..+...|.+.|++++|...|++..... .-+...+..+..++...|++++|
T Consensus 268 ~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 268 MYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred HHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence 13344444433 23355666666666667777777777776665432 11344566666666677777777
Q ss_pred HHHHHHHhccC-CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhh
Q psy3701 132 MAAYFNAFNLF-KGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKV 210 (342)
Q Consensus 132 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 210 (342)
.+.+..+++.. +.+..++..+...|.+.|++++|.+.|++..+ .+...|+.+...|.+.|+.++|++.|++..+..
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77776666654 33455666777788888888888888887653 356678888889999999999999999887643
Q ss_pred hhcCccccccchhhHHHHhhhhHHHHHHHhchh----ccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH
Q psy3701 211 KQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGE----IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST 286 (342)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 286 (342)
... +..............| ..++....+... ...|. ...|..+...+.+.|++++|.+.+++. ...| +..+
T Consensus 422 ~~P-d~~T~~~ll~a~~~~g-~~~~a~~~f~~m~~~~g~~p~-~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~ 496 (697)
T PLN03081 422 VAP-NHVTFLAVLSACRYSG-LSEQGWEIFQSMSENHRIKPR-AMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNM 496 (697)
T ss_pred CCC-CHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHhcCCCCC-ccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHH
Confidence 222 1111111112222222 223333444332 22232 357888999999999999999998764 2233 4567
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 287 FCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
|..+...+...|+.+.|...+++.+++.|++...+..|..++...+
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCC
Confidence 9999999999999999999999999999999888888887765543
No 87
>KOG1128|consensus
Probab=99.72 E-value=2e-15 Score=129.19 Aligned_cols=220 Identities=16% Similarity=0.130 Sum_probs=192.7
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH
Q psy3701 33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL 112 (342)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 112 (342)
.....++..+...|-...|+..|++ ...|-....||...|+..+|.....+-++ .|.++
T Consensus 399 q~q~~laell~slGitksAl~I~Er--------------------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~ 457 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFER--------------------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDP 457 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHh--------------------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcc
Confidence 3444577777788877777777777 45678888999999999999999999988 66678
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy3701 113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ 192 (342)
Q Consensus 113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (342)
..|..+|++.....=|++|.++.+.. +..+...+|......++++++.+.++..++++|-....|+.+|.+..+
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ 531 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH
Confidence 88888888887777677777665543 334667778888889999999999999999999999999999999999
Q ss_pred hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHH
Q psy3701 193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEF 272 (342)
Q Consensus 193 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 272 (342)
.++++.|.+.|.+++..+|++ ..+|.+++.+|.+.|+-.+|...
T Consensus 532 lek~q~av~aF~rcvtL~Pd~------------------------------------~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLEPDN------------------------------------AEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCCc------------------------------------hhhhhhhhHHHHHHhhhHHHHHH
Confidence 999999999999999999999 59999999999999999999999
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701 273 HKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR 315 (342)
Q Consensus 273 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 315 (342)
++++++.+-++..+|.+.-.+..+.|.+++|++.+.+.+.+..
T Consensus 576 l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 576 LKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 9999999988999999999999999999999999999987643
No 88
>KOG3060|consensus
Probab=99.72 E-value=2.5e-14 Score=107.66 Aligned_cols=190 Identities=15% Similarity=0.102 Sum_probs=161.9
Q ss_pred cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701 107 LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM 186 (342)
Q Consensus 107 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 186 (342)
..|+....+-....+....|+.+.|..++.+.....|++..+....|..+...|++++|+++|+..++-+|.+..++-..
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK 126 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK 126 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence 34444445556667778889999999999998888899988888899999999999999999999999999998888888
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701 187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY 266 (342)
Q Consensus 187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (342)
-.+...+|+.-+|++.+...++..+.+ .++|..++.+|...|+|
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~F~~D------------------------------------~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDKFMND------------------------------------QEAWHELAEIYLSEGDF 170 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHhcCc------------------------------------HHHHHHHHHHHHhHhHH
Confidence 888888899999999999999999888 58999999999999999
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC---ChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 267 EEALEFHKQALVVAPMKASTFCCIGYIQALTG---DLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 267 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
++|.-++++.+-+.|.++..+..+|.+++-+| +.+-|.++|.++++++|.+..+++.+..+-..+.
T Consensus 171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 99999999999999999998999999888776 5677899999999999988888777766555443
No 89
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.71 E-value=3.3e-15 Score=113.31 Aligned_cols=142 Identities=15% Similarity=0.093 Sum_probs=77.2
Q ss_pred HhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHH
Q psy3701 71 VDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPAL 150 (342)
Q Consensus 71 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 150 (342)
...+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|......|++..|+..++++....|++..+|.
T Consensus 60 ~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 60 VLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred HhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence 3445555555 555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
.+|.+|.+.|++++|...|.+++++.|.++.+..++|..+.-.|+++.|..++.++....+.+
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence 555555555555555555555555555555555555555555555555555555554444333
No 90
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.71 E-value=4e-15 Score=134.01 Aligned_cols=220 Identities=11% Similarity=-0.025 Sum_probs=123.6
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF 111 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 111 (342)
..++..+...+...+++++|+...+.+ +..+|+....++.+|.++++.++++++... .++...+.+
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~------------l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEH------------LKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH------------HHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence 344445555555566666666666553 355666666666666666666655554444 333333332
Q ss_pred H-------------------HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHH
Q psy3701 112 L-------------------PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLA 172 (342)
Q Consensus 112 ~-------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 172 (342)
. .+++.+|.||..+|+.++|...|+++++.+|+++.+..++|..|... +.++|++++.++
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 2 44444555555555555555555555555555555555555544444 455555554444
Q ss_pred HhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHH
Q psy3701 173 LSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPL 252 (342)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (342)
+.. +...++|.++..++.+.+..+|.+. +.+-..................
T Consensus 176 V~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~----------------d~f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 176 IYR--------------FIKKKQYVGIEEIWSKLVHYNSDDF----------------DFFLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred HHH--------------HHhhhcchHHHHHHHHHHhcCcccc----------------hHHHHHHHHHHhhhccchhHHH
Confidence 432 3333444444444444444444442 0111111111111112333567
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH
Q psy3701 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL 296 (342)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 296 (342)
+.-+=..|...+++++++.+++.+++.+|.+..+...++.+|..
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 77777889999999999999999999999999999999999973
No 91
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.71 E-value=7.9e-15 Score=111.27 Aligned_cols=151 Identities=19% Similarity=0.150 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHH
Q psy3701 55 YKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134 (342)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 134 (342)
+..+.-+.......++...+|.+...+..+|...+..|++.+|+..++++....|++.++|..+|.+|.+.|++++|...
T Consensus 77 ~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~a 156 (257)
T COG5010 77 YLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRA 156 (257)
T ss_pred HhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHH
Confidence 33333456666777777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHH
Q psy3701 135 YFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFME 205 (342)
Q Consensus 135 ~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 205 (342)
|.+++++.|..+.+..++|..+...|+++.|..++..+....+.+..+..+++.+....|++++|..+..+
T Consensus 157 y~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 157 YRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999999999999999999999999999999999998888999999999999999999999887654
No 92
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.71 E-value=2.5e-15 Score=135.30 Aligned_cols=212 Identities=10% Similarity=0.035 Sum_probs=178.8
Q ss_pred HhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc----
Q psy3701 71 VDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH---- 146 (342)
Q Consensus 71 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---- 146 (342)
...+|.+..+|..+...+...+++++|+..++.+++.+|+....++.+|.++...++++++... .++...+.+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 3467899999999999999999999999999999999999999999999999999998888776 6776666655
Q ss_pred ---------------hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhh
Q psy3701 147 ---------------LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVK 211 (342)
Q Consensus 147 ---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 211 (342)
.+++.+|.+|-++|+.++|...++++++.+|+++.+++++|..+... +.++|+.++.+++...
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~- 179 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF- 179 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH-
Confidence 78888999999999999999999999999999999999999999988 9999999998887643
Q ss_pred hcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH-----
Q psy3701 212 QLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST----- 286 (342)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 286 (342)
...+++.++.+++.+.+..+|++.+.
T Consensus 180 -------------------------------------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~ 210 (906)
T PRK14720 180 -------------------------------------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIE 210 (906)
T ss_pred -------------------------------------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHH
Confidence 33346666666677776666665433
Q ss_pred ---------------HHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcC
Q psy3701 287 ---------------FCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEES 335 (342)
Q Consensus 287 ---------------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 335 (342)
+.-+=..|...++|++++..++.+++.+|+|..++..+..++.....+.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~ 274 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDH 274 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCc
Confidence 2333477888999999999999999999999999999999997654443
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.70 E-value=4.4e-14 Score=121.95 Aligned_cols=236 Identities=11% Similarity=0.012 Sum_probs=169.0
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
.+++++....++...|++++|++.+.+.. ..-++....+-..|.++..+|++++|...|...+..+|+
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~------------~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd 70 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNE------------KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD 70 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhh------------hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 35666777888888899999998888752 455666677777788888888888888888888888887
Q ss_pred cHHHHHHhhhHHHhhc-----cHHHHHHHHHHHhccCC------------------------------------------
Q psy3701 111 FLPAWLMYGHSFAVEN-----EHDQAMAAYFNAFNLFK------------------------------------------ 143 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~------------------------------------------ 143 (342)
+...+..+..+..... +.+.-...|.+.....|
T Consensus 71 n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk 150 (517)
T PF12569_consen 71 NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLK 150 (517)
T ss_pred cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 7777666666652222 23333344433322200
Q ss_pred -------------------------------------CCc----hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHH
Q psy3701 144 -------------------------------------GCH----LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV 182 (342)
Q Consensus 144 -------------------------------------~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 182 (342)
..+ ++++.++..|...|++++|++++++++...|..++.
T Consensus 151 ~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el 230 (517)
T PF12569_consen 151 PLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL 230 (517)
T ss_pred HHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH
Confidence 011 344667888888899999999999999999988999
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
+...|.++-..|++.+|...++.+..+++.+. -+....+..+.+
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR------------------------------------yiNsK~aKy~LR 274 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDLADR------------------------------------YINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH------------------------------------HHHHHHHHHHHH
Confidence 99999999999999999999999888888772 455556777788
Q ss_pred hhhHHHHHHHHHHHHhhCCC--c-------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701 263 LKKYEEALEFHKQALVVAPM--K-------ASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~~~~~--~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 314 (342)
.|+.++|.+.+..-.+.+.+ . .+.....|.+|.+.|++..|+..|..+.+..
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 88888888887766544311 1 1223456888888999999988888777653
No 94
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.70 E-value=2.1e-15 Score=109.17 Aligned_cols=125 Identities=16% Similarity=0.125 Sum_probs=109.0
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccC
Q psy3701 167 KFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIA 246 (342)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
..+++++..+|++......+|..+...|++++|+..+++++..+|.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--------------------------------- 50 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--------------------------------- 50 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---------------------------------
Confidence 45778888889888888899999999999999999999999888887
Q ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701 247 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326 (342)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 326 (342)
..++..+|.++...|++++|+..+++++..+|+++..++.+|.++...|++++|+..|+++++++|++.........
T Consensus 51 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 127 (135)
T TIGR02552 51 ---SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKER 127 (135)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 48889999999999999999999999999999999999999999999999999999999999999988875554444
Q ss_pred H
Q psy3701 327 V 327 (342)
Q Consensus 327 ~ 327 (342)
+
T Consensus 128 ~ 128 (135)
T TIGR02552 128 A 128 (135)
T ss_pred H
Confidence 3
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.69 E-value=2.4e-15 Score=134.37 Aligned_cols=147 Identities=11% Similarity=-0.057 Sum_probs=140.6
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc
Q psy3701 67 AHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH 146 (342)
Q Consensus 67 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 146 (342)
........|.+++++..+|.+..+.|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence 34456779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 147 LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+.
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999876554
No 96
>PLN03077 Protein ECB2; Provisional
Probab=99.69 E-value=5.7e-14 Score=132.10 Aligned_cols=294 Identities=9% Similarity=-0.033 Sum_probs=182.3
Q ss_pred cchhhhhhhhhhhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHhCC
Q psy3701 15 EGVSFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDL-YPDSAIAWYAVGCYYYLIGR 93 (342)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~ 93 (342)
++..++..|....-.++...+..+-..+...|++++|.+++.... +. ...+..++..+...|.+.|+
T Consensus 372 ~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~------------~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE------------RKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH------------HhCCCcchHHHHHHHHHHHHcCC
Confidence 444455544422222222233333335556666666666666542 21 12234445555555555555
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC-CC----------------------------
Q psy3701 94 SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF-KG---------------------------- 144 (342)
Q Consensus 94 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~---------------------------- 144 (342)
+++|.+.|++..+ .+...|..+...+...|+.++|+..|+++.... |+
T Consensus 440 ~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 440 IDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred HHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 5555555555332 223445555555555555555555555554321 11
Q ss_pred ------CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccc
Q psy3701 145 ------CHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEII 218 (342)
Q Consensus 145 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 218 (342)
+......+...|.+.|+.++|...|+.. +.+...|+.+...|...|+.++|+..|++..+..... +...
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T 591 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVT 591 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-Cccc
Confidence 1222233556788889999999888875 5578889999999999999999999999887643221 1222
Q ss_pred ccchhhHHHHhhhhHHHHHHHhchh----ccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHH
Q psy3701 219 ADKWEPLLNNLGHKAEDKVKQLGGE----IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQ 294 (342)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 294 (342)
.......+...|. .++....+... ...|. ...|..+..++.+.|++++|.+.+++. ...| +..+|..+-..+
T Consensus 592 ~~~ll~a~~~~g~-v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac 667 (857)
T PLN03077 592 FISLLCACSRSGM-VTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNAC 667 (857)
T ss_pred HHHHHHHHhhcCh-HHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Confidence 2222223332232 33344444432 22333 468899999999999999999999886 3445 466788888888
Q ss_pred HHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 295 ALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 295 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
...|+.+.+....+++++++|++...+..|+.++...+
T Consensus 668 ~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 668 RIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 88999999999999999999999999999988876543
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.68 E-value=6.6e-15 Score=131.60 Aligned_cols=148 Identities=9% Similarity=-0.037 Sum_probs=124.6
Q ss_pred HHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHH
Q psy3701 103 KATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV 182 (342)
Q Consensus 103 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 182 (342)
......|.+++++..||.+....|++++|...++.+++..|++..++..++.++.+.+++++|+..+++++..+|+++..
T Consensus 77 ~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~ 156 (694)
T PRK15179 77 DYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE 156 (694)
T ss_pred HHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence 33445677888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
++.+|.++...|++++|+..|++++..+|++ ..++..+|.++..
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~------------------------------------~~~~~~~a~~l~~ 200 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEF------------------------------------ENGYVGWAQSLTR 200 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCc------------------------------------HHHHHHHHHHHHH
Confidence 8888888888888888888888888877766 5788888888888
Q ss_pred hhhHHHHHHHHHHHHhhCCCchHH
Q psy3701 263 LKKYEEALEFHKQALVVAPMKAST 286 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~~~~~~~~~ 286 (342)
.|+.++|...|++++....+-...
T Consensus 201 ~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 201 RGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred cCCHHHHHHHHHHHHHhhCcchHH
Confidence 888888888888888876554433
No 98
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.67 E-value=5e-14 Score=115.82 Aligned_cols=154 Identities=17% Similarity=0.038 Sum_probs=129.7
Q ss_pred CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG 153 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 153 (342)
+|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...|+.++|.+.+++++..+|..+..+..+|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 36778888888999999999999999999988889999888888899999999999999999999999998888888888
Q ss_pred HHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhH
Q psy3701 154 LECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA 233 (342)
Q Consensus 154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (342)
..+.+.|++.+|+..++..+..+|+++..|..++..|..+|+-.++..
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-------------------------------- 429 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-------------------------------- 429 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH--------------------------------
Confidence 899999998899999888888888888888888888888887655443
Q ss_pred HHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701 234 EDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 280 (342)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 280 (342)
..+..+...|++++|+..+..+.+..
T Consensus 430 ---------------------A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 430 ---------------------ARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred ---------------------HHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 34555666788888888888877765
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.67 E-value=1.2e-14 Score=117.18 Aligned_cols=241 Identities=17% Similarity=0.089 Sum_probs=183.5
Q ss_pred hhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701 27 QSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATS 106 (342)
Q Consensus 27 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 106 (342)
.+..+......+.+++..+|+++..+.-.... .+....+...++..+...++.+.++.-++..+.
T Consensus 30 ~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---------------~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~ 94 (290)
T PF04733_consen 30 SPENKLERDFYQYRSYIALGQYDSVLSEIKKS---------------SSPELQAVRLLAEYLSSPSDKESALEELKELLA 94 (290)
T ss_dssp TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---------------SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCC
T ss_pred CchhHHHHHHHHHHHHHHcCChhHHHHHhccC---------------CChhHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 33445666677889999999988777666552 233345566677666555566777777766554
Q ss_pred cCC--CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHH
Q psy3701 107 LDK--LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIH 184 (342)
Q Consensus 107 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 184 (342)
... .++......|.++...|++++|++.+.+. ++.+.......++...++++.|.+.++.+.+.+.+..-+..
T Consensus 95 ~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qL 169 (290)
T PF04733_consen 95 DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQL 169 (290)
T ss_dssp TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 332 34556667788899999999999987654 45667777888999999999999999999988877776666
Q ss_pred HHHHHHHHhc--ChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 185 EMGVIAYQNH--NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 185 ~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
..+++....| ++.+|...|++..+..+.+ +..+..++.+++.
T Consensus 170 a~awv~l~~g~e~~~~A~y~f~El~~~~~~t------------------------------------~~~lng~A~~~l~ 213 (290)
T PF04733_consen 170 AEAWVNLATGGEKYQDAFYIFEELSDKFGST------------------------------------PKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHCCS--S------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhccCCC------------------------------------HHHHHHHHHHHHH
Confidence 6677777666 5999999999977765555 5788999999999
Q ss_pred hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCCh-HHHHHHHHHHHhcccCchhHHhH
Q psy3701 263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDL-DSAVNYFHKTMALKRDDSFATTM 323 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~ 323 (342)
+|++++|.+.+++++..+|++++++.+++.+...+|+. +.+.+++.+....+|+++.....
T Consensus 214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999999999999999999999999999999 66778889988899999866544
No 100
>KOG0553|consensus
Probab=99.67 E-value=2.4e-15 Score=116.26 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
+-.-|.-+++.++|++|+..|.+||+++|.+ +..|.+.+.+|.+
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n------------------------------------AVyycNRAAAy~~ 127 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTN------------------------------------AVYYCNRAAAYSK 127 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc------------------------------------chHHHHHHHHHHH
Confidence 4566788888899999999999999999988 4788899999999
Q ss_pred hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcC
Q psy3701 263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEES 335 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 335 (342)
+|.++.|++-++.++.++|....+|..||.+|..+|++++|++.|+++++++|++...+..|..+-..+.+..
T Consensus 128 Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 128 LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999988888888877776655
No 101
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.66 E-value=6.1e-15 Score=106.71 Aligned_cols=118 Identities=23% Similarity=0.208 Sum_probs=106.5
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC
Q psy3701 66 LAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC 145 (342)
Q Consensus 66 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 145 (342)
.+++++..+|++....+.+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHH
Q psy3701 146 HLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVI 183 (342)
Q Consensus 146 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 183 (342)
+..++.+|.++...|++++|+..++++++.+|++....
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 99999999999999999999999999999999876643
No 102
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=3.7e-12 Score=102.25 Aligned_cols=257 Identities=15% Similarity=0.041 Sum_probs=194.4
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC-cH
Q psy3701 34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL-FL 112 (342)
Q Consensus 34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 112 (342)
.....|-.-...|+|.+|.....+. -+..+.....+..-+...-+.|+++.+-.++.++-+..++ ..
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rn------------ae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l 153 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRN------------AEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL 153 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHh------------hhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH
Confidence 3334455555667777777666664 3445555556666678888999999999999999998444 35
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC----------------
Q psy3701 113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIA---------------- 176 (342)
Q Consensus 113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------- 176 (342)
......+.+....|+++.|.....++++..|.++.+......+|...|++.+....+.+.-+..
T Consensus 154 ~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~ 233 (400)
T COG3071 154 AVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWE 233 (400)
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999999999998888877665432
Q ss_pred --------------------------CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701 177 --------------------------HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG 230 (342)
Q Consensus 177 --------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 230 (342)
..++.+...++.-+...|++++|.+..+.+++..-+.. +....+
T Consensus 234 glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----------L~~~~~ 303 (400)
T COG3071 234 GLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----------LCRLIP 303 (400)
T ss_pred HHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----------HHHHHh
Confidence 12455566777788899999999999999998766551 111111
Q ss_pred ----hhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHH
Q psy3701 231 ----HKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVN 305 (342)
Q Consensus 231 ----~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 305 (342)
.......+..+. ....|..+.++..+|..+.+.+.+.+|..+|+.+++..|+ ...+..+|.++.+.|+..+|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHH
Confidence 111112222222 3345566689999999999999999999999999988774 5567789999999999999999
Q ss_pred HHHHHHhc
Q psy3701 306 YFHKTMAL 313 (342)
Q Consensus 306 ~~~~al~~ 313 (342)
.+++++..
T Consensus 383 ~r~e~L~~ 390 (400)
T COG3071 383 VRREALLL 390 (400)
T ss_pred HHHHHHHH
Confidence 99998854
No 103
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.63 E-value=2.6e-14 Score=101.44 Aligned_cols=122 Identities=9% Similarity=-0.009 Sum_probs=101.3
Q ss_pred HhhC-CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChH
Q psy3701 173 LSIA-HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP 251 (342)
Q Consensus 173 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (342)
..+. ++..+..+.+|..++..|++++|...|+-...++|.+ ..
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~------------------------------------~~ 70 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS------------------------------------FD 70 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------------------------------------HH
Confidence 3455 6677788899999999999999999999999999988 58
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc---cCchhHHhHHHHHH
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK---RDDSFATTMLSYVI 328 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~ 328 (342)
.|++||.++..+|++++|+..|.+++.++|+++..++++|.|+...|+.+.|++.|+.++... |.+......-...+
T Consensus 71 y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L 150 (157)
T PRK15363 71 YWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML 150 (157)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876 44444444333333
Q ss_pred HH
Q psy3701 329 EQ 330 (342)
Q Consensus 329 ~~ 330 (342)
..
T Consensus 151 ~~ 152 (157)
T PRK15363 151 QQ 152 (157)
T ss_pred HH
Confidence 33
No 104
>KOG2376|consensus
Probab=99.63 E-value=2.7e-13 Score=113.66 Aligned_cols=250 Identities=14% Similarity=0.033 Sum_probs=178.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC
Q psy3701 81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN 160 (342)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 160 (342)
++.--..+...|+|++|.+...+.+...|++..+....-.+....++|++|+...++-......+ ...+..+.|.++++
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcc
Confidence 33334555677899999999999999999999999888889999999999986554433222221 12267888999999
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHh
Q psy3701 161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240 (342)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (342)
..++|+..++ ..++.+..+....|.+++++|+|++|...|+..++.+.++.++........+...+ .....
T Consensus 94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l------~~~~~ 164 (652)
T KOG2376|consen 94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL------QVQLL 164 (652)
T ss_pred cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh------hHHHH
Confidence 9999999888 45666777888889999999999999999999877665552111111111100000 00011
Q ss_pred chhc-cCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC--------C-------chHHHHHHHHHHHHhCChHHHH
Q psy3701 241 GGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP--------M-------KASTFCCIGYIQALTGDLDSAV 304 (342)
Q Consensus 241 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------~-------~~~~~~~l~~~~~~~g~~~~A~ 304 (342)
.... .+....+.+++.+.++...|+|.+|++.+++++.+.. + -..+...++.++..+|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 1111 2233568999999999999999999999999954321 1 1246788999999999999999
Q ss_pred HHHHHHHhcccCchhHHhHHHHHHHHhhhcCCCCCC
Q psy3701 305 NYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPG 340 (342)
Q Consensus 305 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 340 (342)
..|...+..+|.|.........-+-.+..+.+-++|
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~ 280 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDG 280 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhhccccccCch
Confidence 999999999998886666666556666666555553
No 105
>KOG1130|consensus
Probab=99.62 E-value=6.5e-15 Score=118.30 Aligned_cols=254 Identities=18% Similarity=0.242 Sum_probs=188.6
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHhhc----C
Q psy3701 37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS----AIAWYAVGCYYYLIGRSDPARRFLGKATSL----D 108 (342)
Q Consensus 37 ~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~ 108 (342)
.-|.-+.+.|++...+++|+.++ +...++ ..+|..+|.+|+.+++|++|+++-..=+.+ .
T Consensus 22 lEGERLck~gdcraGv~ff~aA~------------qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg 89 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAAL------------QVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG 89 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHH------------HhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc
Confidence 46888899999999999999974 555554 456788999999999999999886543322 1
Q ss_pred C--CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC------CchHHHHHHHHHhhhCC-------------------
Q psy3701 109 K--LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG------CHLPALYVGLECGLTNN------------------- 161 (342)
Q Consensus 109 ~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~------------------- 161 (342)
. ....+--++|.++-..|.|++|+.+..+-+.+... ...+++++|.+|...|+
T Consensus 90 dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~ 169 (639)
T KOG1130|consen 90 DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTS 169 (639)
T ss_pred chhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHH
Confidence 1 22345668999999999999999999988776432 45688999999987764
Q ss_pred -HHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701 162 -ARLASKFFDLALSIAHE------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE 234 (342)
Q Consensus 162 -~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (342)
++.|.++|..-+++... ...++-++|..|+-+|+|+.|+..-+.-+.+....+ ...
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG----------------DrA- 232 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG----------------DRA- 232 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh----------------hHH-
Confidence 33455555554444322 234577889999999999999999988888776553 111
Q ss_pred HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC----CC--chHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701 235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA----PM--KASTFCCIGYIQALTGDLDSAVNYFH 308 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 308 (342)
..-.++.++|+++.-.|+++.|+++|++.+.+. .. .+...+.+|..|.-..++++|+.++.
T Consensus 233 -------------aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~ 299 (639)
T KOG1130|consen 233 -------------AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQ 299 (639)
T ss_pred -------------HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 113688999999999999999999999987543 22 34567889999999999999999999
Q ss_pred HHHhcccC------chhHHhHHHHHHHHhh
Q psy3701 309 KTMALKRD------DSFATTMLSYVIEQLI 332 (342)
Q Consensus 309 ~al~~~p~------~~~~~~~l~~~~~~~~ 332 (342)
+-+.+... ...+...|+..+..++
T Consensus 300 rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 300 RHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 87766322 2345566666665544
No 106
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.61 E-value=3.4e-14 Score=100.85 Aligned_cols=109 Identities=16% Similarity=0.092 Sum_probs=100.0
Q ss_pred HhcC-CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHH
Q psy3701 71 VDLY-PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPA 149 (342)
Q Consensus 71 ~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 149 (342)
.... ++..+..+.+|..++..|++++|.+.|+-....+|.+...|++||.++..+|++++|+..|.+++.++|+++.++
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 4556 778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHhhCCCC
Q psy3701 150 LYVGLECGLTNNARLASKFFDLALSIAHED 179 (342)
Q Consensus 150 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 179 (342)
++.|.++...|+.+.|.+.|+.++......
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999998876433
No 107
>KOG0553|consensus
Probab=99.60 E-value=1.9e-14 Score=111.36 Aligned_cols=120 Identities=12% Similarity=-0.007 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 157 (342)
++.+..-|.-+.+.++|.+|+..|.+||+++|+++..|.+.+.+|.++|+++.|++.++.++.++|....+|..+|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 45667779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChh
Q psy3701 158 LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT 197 (342)
Q Consensus 158 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (342)
.+|++.+|++.|+++++++|++...+..|..+-...++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999988888877777666655
No 108
>PLN03077 Protein ECB2; Provisional
Probab=99.60 E-value=6.4e-13 Score=125.12 Aligned_cols=278 Identities=13% Similarity=-0.025 Sum_probs=183.4
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc--
Q psy3701 30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL-- 107 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 107 (342)
.+..++..+...|.+.|++++|...|++. ...+..+|..+...|.+.|++++|+..|++..+.
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---------------~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRM---------------ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhC---------------CCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 34455556666677777777777777663 1235667888888888888888888888876553
Q ss_pred CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC-CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701 108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG-CHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM 186 (342)
Q Consensus 108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 186 (342)
.|+. ..+..+-..+...|++++|.+.+..+.+.... +..++..+...|.+.|++++|.+.|++..+ .+...|..+
T Consensus 386 ~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~m 461 (857)
T PLN03077 386 SPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSI 461 (857)
T ss_pred CCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHH
Confidence 3543 34555555777888888888888888776533 345666688889999999999999887643 356678888
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh----------------------------------hh
Q psy3701 187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG----------------------------------HK 232 (342)
Q Consensus 187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~ 232 (342)
...+...|++++|+..|++.....+.+ ..............+ ..
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~~~~pd--~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLLTLKPN--SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCCCCC--HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 888889999999999998887532211 111111111111111 11
Q ss_pred HHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701 233 AEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA--PMKASTFCCIGYIQALTGDLDSAVNYFHKT 310 (342)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 310 (342)
.+++...+... ......|..+...|.+.|+.++|++.|++..+.. | +..++..+-..+.+.|+.++|.++|+..
T Consensus 540 ~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 540 MNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 12233333333 3345678888888888888888888888877643 4 3445666667788888888888888888
Q ss_pred HhcccC--chhHHhHHHHHHHHhh
Q psy3701 311 MALKRD--DSFATTMLSYVIEQLI 332 (342)
Q Consensus 311 l~~~p~--~~~~~~~l~~~~~~~~ 332 (342)
.+..+- +...+..+..++.+.+
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCC
Confidence 744322 3345666666665543
No 109
>KOG3785|consensus
Probab=99.59 E-value=1.8e-12 Score=102.55 Aligned_cols=157 Identities=13% Similarity=0.100 Sum_probs=125.7
Q ss_pred hhhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701 25 QLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKA 104 (342)
Q Consensus 25 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 104 (342)
....+....+...+|.+++..|+|++|...|... ...+.-+.+.+.+++.+++-+|.|.+|...-.++
T Consensus 50 ~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~------------~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 50 NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFL------------MNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHH------------hccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 3344445567778999999999999999999985 3555557889999999999999999999887765
Q ss_pred hhc--------------CC------------CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701 105 TSL--------------DK------------LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL 158 (342)
Q Consensus 105 ~~~--------------~~------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 158 (342)
-+. +. +..+-...++.+....-.|.+|++.|.+.+..+|+......+++.+|.+
T Consensus 118 ~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK 197 (557)
T KOG3785|consen 118 PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK 197 (557)
T ss_pred CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh
Confidence 321 11 1122355677888888899999999999999999988888899999999
Q ss_pred hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q psy3701 159 TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN 193 (342)
Q Consensus 159 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (342)
+.-++-+.+.+.--++..|+++.+.+..+..+++.
T Consensus 198 lDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 198 LDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred cchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 99999999999999999998887766666655543
No 110
>KOG1128|consensus
Probab=99.56 E-value=2.9e-13 Score=116.15 Aligned_cols=203 Identities=10% Similarity=0.033 Sum_probs=177.7
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154 (342)
Q Consensus 75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 154 (342)
|.....-..++..+...|-...|+..|++ ...|-....||...|+..+|.....+-++ .|.++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 44456667899999999999999999998 56677788999999999999999999999 6666888888888
Q ss_pred HHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE 234 (342)
Q Consensus 155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (342)
+.....-+++|.++.+.. +..+...+|......++|+++.+.++..++++|-.
T Consensus 466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--------------------- 518 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQ--------------------- 518 (777)
T ss_pred hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccc---------------------
Confidence 888877778887777654 34466777777888999999999999999999988
Q ss_pred HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701 235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 314 (342)
...|+.+|.+..+.++++.|...|..++..+|++..+|.+++..|.+.|+..+|...++++++.+
T Consensus 519 ---------------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 519 ---------------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred ---------------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHhHHHHHH
Q psy3701 315 RDDSFATTMLSYVI 328 (342)
Q Consensus 315 p~~~~~~~~l~~~~ 328 (342)
-++..+|.+...+.
T Consensus 584 ~~~w~iWENymlvs 597 (777)
T KOG1128|consen 584 YQHWQIWENYMLVS 597 (777)
T ss_pred CCCCeeeechhhhh
Confidence 87777776655443
No 111
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=8.9e-12 Score=107.88 Aligned_cols=247 Identities=14% Similarity=0.058 Sum_probs=171.8
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC 156 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 156 (342)
+.+.+.....++...|++++|+.++++....-.+........|.++..+|++++|...|+..+..+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45677788889999999999999999988888888889999999999999999999999999999999988888777776
Q ss_pred hhh-----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhH-HHHHHHHHHHhhhhcCccccccchhhHHH---
Q psy3701 157 GLT-----NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTV-AENCFMEALSKVKQLGGEIIADKWEPLLN--- 227 (342)
Q Consensus 157 ~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~~--- 227 (342)
... .+.+.-...|++.....|....+.. +...+..-.++.. +..++...+...-.+- ......++.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~KgvPsl----F~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRKGVPSL----FSNLKPLYKDPE 157 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHhcCCchH----HHHHHHHHcChh
Confidence 333 2567778888888888876543321 1111111122322 2233333333221110 000000000
Q ss_pred ---HhhhhHHHHHHHhchh----------ccCCC-ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q psy3701 228 ---NLGHKAEDKVKQLGGE----------IIADK-WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI 293 (342)
Q Consensus 228 ---~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 293 (342)
.+.............. ..+|. ...+++.++..|...|++++|+++++++|+..|..++.+...|.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari 237 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 1111111111111110 11111 234668899999999999999999999999999999999999999
Q ss_pred HHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701 294 QALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI 328 (342)
Q Consensus 294 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 328 (342)
+...|++.+|.++++.+..+++.|.......+.-+
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 99999999999999999999999886655544433
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.56 E-value=1.2e-12 Score=107.82 Aligned_cols=153 Identities=18% Similarity=0.113 Sum_probs=132.4
Q ss_pred CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccch
Q psy3701 143 KGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKW 222 (342)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 222 (342)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++.++|.+.+++++...|..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--------- 373 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--------- 373 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---------
Confidence 66777888889999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHH
Q psy3701 223 EPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS 302 (342)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (342)
..++.++|.++.+.|++.+|+..++..+..+|+++..|..++..|..+|+..+
T Consensus 374 ---------------------------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 374 ---------------------------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred ---------------------------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 37889999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701 303 AVNYFHKTMALKRDDSFATTMLSYVIEQL 331 (342)
Q Consensus 303 A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 331 (342)
|...+.+...+..+...+...+....++.
T Consensus 427 a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 427 ALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 87777777777766666666666655554
No 113
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.52 E-value=4.4e-13 Score=112.24 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
+...|..++..|+|++|+..|+++++.+|.+ ..++.++|.++..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~------------------------------------~~a~~~~a~~~~~ 48 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN------------------------------------AELYADRAQANIK 48 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHH
Confidence 4567888999999999999999999999998 5899999999999
Q ss_pred hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701 263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE 333 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 333 (342)
.|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+...+.+
T Consensus 49 ~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 49 LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999877754
No 114
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.51 E-value=7.1e-13 Score=107.07 Aligned_cols=239 Identities=11% Similarity=-0.019 Sum_probs=171.1
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhh
Q psy3701 40 RVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYG 119 (342)
Q Consensus 40 ~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 119 (342)
+-++-.|+|.+++.-++.. ....+...+....+.+++..+|+++..+.-.... .+....+...++
T Consensus 9 rn~fy~G~Y~~~i~e~~~~------------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la 73 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASLK------------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLA 73 (290)
T ss_dssp HHHHCTT-HHHHCHHHHCH------------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhcc------------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHH
Confidence 3455678888888666531 1222345667788999999999988776555432 233345566667
Q ss_pred hHHHhhccHHHHHHHHHHHhccCCC--CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChh
Q psy3701 120 HSFAVENEHDQAMAAYFNAFNLFKG--CHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT 197 (342)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (342)
..+...++.+.++..++..+..... ++......|.++...|++++|++.+.+. ++.+.......++...+|++
T Consensus 74 ~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~d 148 (290)
T PF04733_consen 74 EYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPD 148 (290)
T ss_dssp HHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HH
T ss_pred HHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHH
Confidence 6666656677777777766544322 3445556788899999999999888764 56788888899999999999
Q ss_pred HHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhh--hHHHHHHHHHH
Q psy3701 198 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK--KYEEALEFHKQ 275 (342)
Q Consensus 198 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~ 275 (342)
.|.+.++++-+.+++. ..+....+++....| ++.+|...|++
T Consensus 149 lA~k~l~~~~~~~eD~------------------------------------~l~qLa~awv~l~~g~e~~~~A~y~f~E 192 (290)
T PF04733_consen 149 LAEKELKNMQQIDEDS------------------------------------ILTQLAEAWVNLATGGEKYQDAFYIFEE 192 (290)
T ss_dssp HHHHHHHHHHCCSCCH------------------------------------HHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcH------------------------------------HHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 9999999987776555 233333344444455 68999999999
Q ss_pred HHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhc
Q psy3701 276 ALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEE 334 (342)
Q Consensus 276 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 334 (342)
..+..+.++..+..++.+...+|++++|...+++++..+|+++.+..++..+....++.
T Consensus 193 l~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 193 LSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 88887888999999999999999999999999999999999999999887776655544
No 115
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=1.1e-10 Score=93.99 Aligned_cols=252 Identities=15% Similarity=0.064 Sum_probs=185.4
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC-chHHHHHHHHHhhhC
Q psy3701 82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC-HLPALYVGLECGLTN 160 (342)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~ 160 (342)
..-|..-...|+|.+|.+...+.-+..+...-.+..-+.+...+|+++.+-.+..++-+..+++ .......+.+....|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 3446666778999999999999888888877788888899999999999999999999995543 445667889999999
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccc---cccchhhHHHHhhhh--HHH
Q psy3701 161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI---IADKWEPLLNNLGHK--AED 235 (342)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~ 235 (342)
+++.|.....++++..|.++.+......+|...|+|.+...++.+.-+..--+..+. ...+|..++...... .+.
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999999999999999999999999999999999999999998888766443322000 011111111111100 001
Q ss_pred HHHHhchhc-cCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHh-------------------------------hCCCc
Q psy3701 236 KVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV-------------------------------VAPMK 283 (342)
Q Consensus 236 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------------------------------~~~~~ 283 (342)
......... .....+.+...++.-+.+.|+.++|.+..+.+++ ..|++
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 000111111 1112245566667777788888888777776663 45777
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhc
Q psy3701 284 ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEE 334 (342)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 334 (342)
+..+..+|..+.+.+.|.+|..+|+.++...|+ ...+..++.++.+.++.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEP 377 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCCh
Confidence 889999999999999999999999999999884 45677888888877653
No 116
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.48 E-value=1.1e-12 Score=109.89 Aligned_cols=113 Identities=13% Similarity=-0.016 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC
Q psy3701 81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN 160 (342)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 160 (342)
+...|...+..|++++|+..|+++++++|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45668888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q psy3701 161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQN 193 (342)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (342)
++++|+..|++++.++|+++.+...++.+....
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988888887776555
No 117
>KOG2376|consensus
Probab=99.47 E-value=2e-10 Score=96.86 Aligned_cols=208 Identities=13% Similarity=0.010 Sum_probs=153.8
Q ss_pred hHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHh
Q psy3701 39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMY 118 (342)
Q Consensus 39 g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 118 (342)
-..+...|+|++|.....+ ++...|++..++...-.+..+.++|++|+...++-......+. ..+..
T Consensus 19 ln~~~~~~e~e~a~k~~~K------------il~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEK 85 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANK------------ILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEK 85 (652)
T ss_pred HHHhccchHHHHHHHHHHH------------HHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHH
Confidence 3455567888888888877 4688899999999999999999999999966554332222221 22678
Q ss_pred hhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC--------------------
Q psy3701 119 GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHE-------------------- 178 (342)
Q Consensus 119 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------------- 178 (342)
+.|.++.+..++|+..+. ..++.+.......|.+++++|+|++|..+|+...+.+.+
T Consensus 86 AYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 889999999999999988 445555667778899999999999999999988654421
Q ss_pred -----------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCC
Q psy3701 179 -----------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIAD 247 (342)
Q Consensus 179 -----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
+.+..++.+.++...|+|.+|++.+++++++....- ..+...+ .....
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l-------------~~~d~~e--------Eeie~ 221 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKL-------------EDEDTNE--------EEIEE 221 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhh-------------cccccch--------hhHHH
Confidence 345688999999999999999999999977665431 0000000 00111
Q ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Q psy3701 248 KWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 283 (342)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 283 (342)
....+...++.++..+|+.++|...|...++.+|.+
T Consensus 222 el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 222 ELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 124577788999999999999999999998877644
No 118
>KOG3785|consensus
Probab=99.47 E-value=2.2e-11 Score=96.48 Aligned_cols=161 Identities=11% Similarity=-0.030 Sum_probs=130.3
Q ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhh
Q psy3701 42 YEALENRALAADCYKGALLADLFKLAHELVDLYPD-SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGH 120 (342)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 120 (342)
+....+|..|+.+++-.+ ..+.+ ....-..+|.|++.+|+|++|...|.-+.+.+.-+.+.+.+++-
T Consensus 32 fls~rDytGAislLefk~------------~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAc 99 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKL------------NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLAC 99 (557)
T ss_pred HHhcccchhHHHHHHHhh------------ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHH
Confidence 345678888988888753 22222 23566778999999999999999999999987778899999999
Q ss_pred HHHhhccHHHHHHHHHHHhcc--------------CC------------CCchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701 121 SFAVENEHDQAMAAYFNAFNL--------------FK------------GCHLPALYVGLECGLTNNARLASKFFDLALS 174 (342)
Q Consensus 121 ~~~~~g~~~~A~~~~~~al~~--------------~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 174 (342)
++.-.|.|.+|...-.++-+. +. +..+-...++.+.+..-.|++|++.|.+.+.
T Consensus 100 c~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 100 CKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999887766432 11 1122334567777777789999999999999
Q ss_pred hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701 175 IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214 (342)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 214 (342)
.+|+....-..++.+|+++.-|+-+.+.+.-.++..|+++
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence 9998888888999999999999999999999999999884
No 119
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.47 E-value=7.9e-11 Score=92.96 Aligned_cols=184 Identities=11% Similarity=-0.089 Sum_probs=113.3
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH---HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA---WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG 153 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 153 (342)
++..++..|..++..|++++|+..|++++...|..+.+ .+.+|.++...+++++|+..+++.++..|+++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~------ 104 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------ 104 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc------
Confidence 34445555555566666666666666666655554332 255555555555555555555555555555332
Q ss_pred HHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc------------------ChhHHHHHHHHHHHhhhhcCc
Q psy3701 154 LECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH------------------NYTVAENCFMEALSKVKQLGG 215 (342)
Q Consensus 154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------~~~~A~~~~~~al~~~~~~~~ 215 (342)
.+.+++.+|.++...+ ...+|+..|++.++..|++.
T Consensus 105 -------------------------~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~- 158 (243)
T PRK10866 105 -------------------------IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ- 158 (243)
T ss_pred -------------------------hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh-
Confidence 1233444444432222 13467788888888888773
Q ss_pred cccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch---HHHHHHHH
Q psy3701 216 EIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---STFCCIGY 292 (342)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~ 292 (342)
....+...+...... .+.--..+|..|.+.|.|..|+.-++.+++..|+.+ +++..++.
T Consensus 159 -----ya~~A~~rl~~l~~~-------------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ 220 (243)
T PRK10866 159 -----YTTDATKRLVFLKDR-------------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMEN 220 (243)
T ss_pred -----hHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 000011111111000 133445789999999999999999999999988764 78899999
Q ss_pred HHHHhCChHHHHHHHHHH
Q psy3701 293 IQALTGDLDSAVNYFHKT 310 (342)
Q Consensus 293 ~~~~~g~~~~A~~~~~~a 310 (342)
.|..+|..++|.......
T Consensus 221 ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 221 AYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHcCChHHHHHHHHHH
Confidence 999999999998876543
No 120
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.44 E-value=7.5e-11 Score=91.00 Aligned_cols=186 Identities=16% Similarity=0.055 Sum_probs=114.6
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch---HHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL---PAL 150 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~ 150 (342)
++..++..|...+..|++.+|+..|++.+...|.. +.+.+.+|.++...|++++|+..+++.++..|+++. +++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 35667777777777777777777777777766654 456777777777777777777777777777776543 334
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701 151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG 230 (342)
Q Consensus 151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 230 (342)
.+|.++.... ...+ ......+...+|+..|+..+...|+++ . ...+...+.
T Consensus 84 ~~g~~~~~~~---------~~~~--------------~~~~D~~~~~~A~~~~~~li~~yP~S~----y--~~~A~~~l~ 134 (203)
T PF13525_consen 84 MLGLSYYKQI---------PGIL--------------RSDRDQTSTRKAIEEFEELIKRYPNSE----Y--AEEAKKRLA 134 (203)
T ss_dssp HHHHHHHHHH---------HHHH---------------TT---HHHHHHHHHHHHHHHH-TTST----T--HHHHHHHHH
T ss_pred HHHHHHHHhC---------ccch--------------hcccChHHHHHHHHHHHHHHHHCcCch----H--HHHHHHHHH
Confidence 4444333220 0000 112233455689999999999999885 0 001111111
Q ss_pred hhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHhCChHHHH
Q psy3701 231 HKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---STFCCIGYIQALTGDLDSAV 304 (342)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~g~~~~A~ 304 (342)
...... +.--..+|..|.+.|.+..|+..++.+++..|+.. .++..++.++.++|..+.|.
T Consensus 135 ~l~~~l-------------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 135 ELRNRL-------------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHH-------------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHH-------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 111111 34456689999999999999999999999999875 67888999999999988554
No 121
>KOG4340|consensus
Probab=99.43 E-value=2e-11 Score=94.54 Aligned_cols=217 Identities=14% Similarity=0.055 Sum_probs=172.2
Q ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHH
Q psy3701 43 EALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF 122 (342)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 122 (342)
....+|+.|++++.. -.+..|.+...+..+|.||+...++..|..+|++.-...|.........+..+
T Consensus 21 I~d~ry~DaI~~l~s------------~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 21 IRDARYADAIQLLGS------------ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred HHHhhHHHHHHHHHH------------HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 445667777777766 45889999999999999999999999999999999999999998888899999
Q ss_pred HhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHH
Q psy3701 123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENC 202 (342)
Q Consensus 123 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 202 (342)
...+.+.+|+...........-.......-+-+.+..+++..+....++.-. .++.....+.|.+.++.|+++.|++-
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHH
Confidence 9999999999988776554221223334456667777888887776665321 25677889999999999999999999
Q ss_pred HHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---
Q psy3701 203 FMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV--- 279 (342)
Q Consensus 203 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 279 (342)
|+.+++...-++ .+-++++.+..+.|+++.|+++..+.++.
T Consensus 167 FqaAlqvsGyqp------------------------------------llAYniALaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 167 FQAALQVSGYQP------------------------------------LLAYNLALAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHhhcCCCc------------------------------------hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 999999887763 67788999999999999999988887754
Q ss_pred -CCCc-------------------------hHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701 280 -APMK-------------------------ASTFCCIGYIQALTGDLDSAVNYFHK 309 (342)
Q Consensus 280 -~~~~-------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~ 309 (342)
.|.. ..++...+.++.+.|+++.|.+.+..
T Consensus 211 ~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 211 QHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred cCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 2321 23455567788899999998877654
No 122
>KOG1915|consensus
Probab=99.42 E-value=4.7e-09 Score=86.65 Aligned_cols=282 Identities=12% Similarity=0.091 Sum_probs=166.6
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcC
Q psy3701 29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLD 108 (342)
Q Consensus 29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 108 (342)
.++...|..-|+.-..++++..|.+.|+.++ ..+..+...|...+.+-++......|...+++|+.+-
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERAL------------dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l 137 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERAL------------DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL 137 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------------hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence 3455666677788888888888988888875 5555555666666666666666666666666666666
Q ss_pred CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC--------------------------------chHHHHHHHHH
Q psy3701 109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC--------------------------------HLPALYVGLEC 156 (342)
Q Consensus 109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------------~~~~~~l~~~~ 156 (342)
|.....|+.....-...|+...|.+.|++-++..|+. ...|...+..-
T Consensus 138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE 217 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFE 217 (677)
T ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHH
Confidence 6655556555555555566666666666665555541 23344444444
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhh-
Q psy3701 157 GLTNNARLASKFFDLALSIAHEDP---FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHK- 232 (342)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~- 232 (342)
.+.|+..-|..+|+++++...++. .++...|..-..++.++.|..+|+-++..-|.+........+...-...|+.
T Consensus 218 ~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~ 297 (677)
T KOG1915|consen 218 EKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKE 297 (677)
T ss_pred HhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchh
Confidence 555555555555555555443332 1233334444445566666666666666665553111111111111112211
Q ss_pred -HH------HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchH---------HHHHHHHH-HH
Q psy3701 233 -AE------DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS---------TFCCIGYI-QA 295 (342)
Q Consensus 233 -~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~l~~~-~~ 295 (342)
.+ ...+.-.....+|...++|+.+-.+-...|+.+.-.+.|++|+..-|.... .|.+.+.. -.
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111112224567777889999988888899999999999999987775321 22222221 13
Q ss_pred HhCChHHHHHHHHHHHhcccCchhHHh
Q psy3701 296 LTGDLDSAVNYFHKTMALKRDDSFATT 322 (342)
Q Consensus 296 ~~g~~~~A~~~~~~al~~~p~~~~~~~ 322 (342)
...+.+.+.+.|+.++++-|...+...
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFa 404 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFA 404 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHH
Confidence 568899999999999999887665433
No 123
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.42 E-value=8e-11 Score=86.99 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 157 (342)
+..++..|..|-..|-+.-|.-.|.+++.+.|+.++++..+|.-+...|+++.|.+.|...++++|....+..+.|..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 34445555555555655666666666666666666666666666666666666666666666666666556666666666
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCh
Q psy3701 158 LTNNARLASKFFDLALSIAHEDP 180 (342)
Q Consensus 158 ~~~~~~~A~~~~~~~~~~~~~~~ 180 (342)
--|++.-|.+-+.+-.+.+|++|
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCCh
Confidence 66666666666666666666555
No 124
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.41 E-value=6.8e-10 Score=105.92 Aligned_cols=275 Identities=12% Similarity=-0.005 Sum_probs=191.6
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD-----SAIAWYAVGCYYYLIGRSDPARRFLGKATS 106 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 106 (342)
..+....|..+...|++++|...+++++ ...|. ...+...+|.++...|++++|...+++++.
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al------------~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~ 519 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELAL------------AELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQ 519 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH------------hcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444457788888999999999998864 32222 134567889999999999999999999987
Q ss_pred cCCCc------HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC--------CchHHHHHHHHHhhhCCHHHHHHHHHHH
Q psy3701 107 LDKLF------LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG--------CHLPALYVGLECGLTNNARLASKFFDLA 172 (342)
Q Consensus 107 ~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 172 (342)
..... ..++..+|.++...|++++|...+++++..... ....+..+|.++...|++++|...++++
T Consensus 520 ~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 599 (903)
T PRK04841 520 MARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG 599 (903)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 53321 245677899999999999999999999886322 1123446788899999999999999998
Q ss_pred HhhCCC-----ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchh-----hHHHHhhhhHHHHHHHhch
Q psy3701 173 LSIAHE-----DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE-----PLLNNLGHKAEDKVKQLGG 242 (342)
Q Consensus 173 ~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 242 (342)
+..... ....+..+|.++...|++++|...+.++..+.+............ ..+...+ ....+......
T Consensus 600 l~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~l~~ 678 (903)
T PRK04841 600 LEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG-DKEAAANWLRQ 678 (903)
T ss_pred HHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC-CHHHHHHHHHh
Confidence 875332 244566789999999999999999999988654431000000000 0001111 11111111111
Q ss_pred hc-c--CC--CChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC------CchHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701 243 EI-I--AD--KWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP------MKASTFCCIGYIQALTGDLDSAVNYFHKTM 311 (342)
Q Consensus 243 ~~-~--~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 311 (342)
.. . .. .....+..++.++...|++++|...+++++.... ....++..+|.++...|+.++|...+.+++
T Consensus 679 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 679 APKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred cCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 0 00 0112356789999999999999999999987632 234578889999999999999999999999
Q ss_pred hcccCchh
Q psy3701 312 ALKRDDSF 319 (342)
Q Consensus 312 ~~~p~~~~ 319 (342)
++......
T Consensus 759 ~la~~~g~ 766 (903)
T PRK04841 759 KLANRTGF 766 (903)
T ss_pred HHhCccch
Confidence 98765544
No 125
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.41 E-value=1.2e-10 Score=94.90 Aligned_cols=194 Identities=16% Similarity=0.127 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCC------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701 81 WYAVGCYYYLIGRSDPARRFLGKATSLDKL------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154 (342)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 154 (342)
+...|..|...+++++|..+|.++....-. -...+...+.++... ++++|+.++++++.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~-------------- 102 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE-------------- 102 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH--------------
Confidence 344467777778888888888777543211 012233334443333 55555555555542
Q ss_pred HHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhH
Q psy3701 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN-HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA 233 (342)
Q Consensus 155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (342)
+|...|++..|- ..+..+|.+|... |++++|+.+|+++++......
T Consensus 103 ~y~~~G~~~~aA--------------~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~------------------- 149 (282)
T PF14938_consen 103 IYREAGRFSQAA--------------KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG------------------- 149 (282)
T ss_dssp HHHHCT-HHHHH--------------HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-------------------
T ss_pred HHHhcCcHHHHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-------------------
Confidence 334444444443 3456778888888 999999999999999876553
Q ss_pred HHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHHhCChHHHHHH
Q psy3701 234 EDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-------ASTFCCIGYIQALTGDLDSAVNY 306 (342)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~ 306 (342)
........+..+|.++.+.|+|++|++.|++.....-++ ...++..+.|+...|+...|...
T Consensus 150 -----------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~ 218 (282)
T PF14938_consen 150 -----------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKA 218 (282)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred -----------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 001114677889999999999999999999998754322 13456788899999999999999
Q ss_pred HHHHHhcccCchhH--HhHHHHHHHHhhh
Q psy3701 307 FHKTMALKRDDSFA--TTMLSYVIEQLIE 333 (342)
Q Consensus 307 ~~~al~~~p~~~~~--~~~l~~~~~~~~~ 333 (342)
+++....+|..... ...+..+++.+.+
T Consensus 219 ~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 219 LERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp HHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 99999999976543 3445555555443
No 126
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.41 E-value=1.2e-11 Score=87.31 Aligned_cols=111 Identities=15% Similarity=0.102 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV 259 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (342)
+..++.+|..+...|++++|+..|++++...|+++ ....+++.+|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------------------------~~~~~~~~l~~~ 48 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST---------------------------------YAPNAHYWLGEA 48 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---------------------------------ccHHHHHHHHHH
Confidence 34567788888888888888888888888777652 113577788888
Q ss_pred HHHhhhHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhH
Q psy3701 260 NRKLKKYEEALEFHKQALVVAPMK---ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTM 323 (342)
Q Consensus 260 ~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 323 (342)
+...|++++|+..|++++...|++ +.++..+|.++...|++++|..+++++++..|++..+...
T Consensus 49 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 49 YYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 888888888888888888887764 5678888888888888888888888888888887765443
No 127
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=9.4e-12 Score=97.24 Aligned_cols=121 Identities=14% Similarity=0.113 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC---CHHHHHHHHH
Q psy3701 94 SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN---NARLASKFFD 170 (342)
Q Consensus 94 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~ 170 (342)
.+.-+.-++.-+..+|++++.|..||.+|+.+|+++.|...|.+++++.|+++..+..+|.++..+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3455666777788899999999999999999999999999999999999999999999999877664 5678999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701 171 LALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214 (342)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 214 (342)
+++..+|.+..+.+.+|..++..|+|.+|+..++..++..|.+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999988773
No 128
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.40 E-value=2.9e-12 Score=80.63 Aligned_cols=66 Identities=27% Similarity=0.485 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC-ChHHHHHHHHHHHhccc
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG-DLDSAVNYFHKTMALKR 315 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p 315 (342)
+..|..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5789999999999999999999999999999999999999999999999 79999999999999998
No 129
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.40 E-value=1.3e-10 Score=89.65 Aligned_cols=159 Identities=15% Similarity=0.127 Sum_probs=124.6
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701 30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD---SAIAWYAVGCYYYLIGRSDPARRFLGKATS 106 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 106 (342)
.+...++..|...+..|++.+|+..|++. +...|. .+.+.+.+|.+++..|++++|+..+++.+.
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l------------~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKL------------IDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHH------------HHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35667788999999999999999999995 465554 578999999999999999999999999999
Q ss_pred cCCCcH---HHHHHhhhHHHhhc-----------cHHHHHHHHHHHhccCCCCchHH-----------------HHHHHH
Q psy3701 107 LDKLFL---PAWLMYGHSFAVEN-----------EHDQAMAAYFNAFNLFKGCHLPA-----------------LYVGLE 155 (342)
Q Consensus 107 ~~~~~~---~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~-----------------~~l~~~ 155 (342)
..|+++ .+++.+|.++.... ...+|+..|+..+...|++..+- +.+|..
T Consensus 71 ~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 71 LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998864 57888888866543 34589999999999999976432 246788
Q ss_pred HhhhCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHhcChhHHH
Q psy3701 156 CGLTNNARLASKFFDLALSIAHEDP---FVIHEMGVIAYQNHNYTVAE 200 (342)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~ 200 (342)
|.+.|.+..|+..++.+++..|+.+ .++..++..+..+|..+.|.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999999999999875 46788889999999887443
No 130
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=6.4e-11 Score=92.66 Aligned_cols=134 Identities=14% Similarity=0.092 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHh
Q psy3701 161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240 (342)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (342)
..+.-+.-++.-+..+|+|..-|..+|.+|+.+|++..|...|.+++++.|++
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--------------------------- 189 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--------------------------- 189 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC---------------------------
Confidence 35566667788888999999999999999999999999999999999999999
Q ss_pred chhccCCCChHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc
Q psy3701 241 GGEIIADKWEPLLNNLGHVNRKLK---KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD 317 (342)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 317 (342)
++.+..+|.++..+. ...++...+++++..+|.+..+.+.+|..++..|++.+|...++..++..|.+
T Consensus 190 ---------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 190 ---------PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred ---------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 588888888886553 45689999999999999999999999999999999999999999999998877
Q ss_pred hhHHhHHHHHHHH
Q psy3701 318 SFATTMLSYVIEQ 330 (342)
Q Consensus 318 ~~~~~~l~~~~~~ 330 (342)
..-...+......
T Consensus 261 ~~rr~~ie~~ia~ 273 (287)
T COG4235 261 DPRRSLIERSIAR 273 (287)
T ss_pred CchHHHHHHHHHH
Confidence 6555555444433
No 131
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.38 E-value=1.7e-11 Score=86.51 Aligned_cols=106 Identities=10% Similarity=0.047 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC---chHHHH
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC---HLPALY 151 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~ 151 (342)
+..++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..+++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4567888888888888888888888888887765 4678888888888888888888888888887774 456777
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHH
Q psy3701 152 VGLECGLTNNARLASKFFDLALSIAHEDPFVI 183 (342)
Q Consensus 152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 183 (342)
+|.++...|++++|+..+++++...|++..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 88888888888888888888888888776543
No 132
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.38 E-value=2.1e-10 Score=90.55 Aligned_cols=184 Identities=11% Similarity=0.005 Sum_probs=136.5
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701 30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIA---WYAVGCYYYLIGRSDPARRFLGKATS 106 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~a~~ 106 (342)
.....++..|......|++++|+..|++. +...|..+.+ .+.+|.++++.+++++|+..+++.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l------------~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEAL------------DNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 35566778888888899999999999884 5888887654 48999999999999999999999999
Q ss_pred cCCCc---HHHHHHhhhHHHhhc------------------cHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHH
Q psy3701 107 LDKLF---LPAWLMYGHSFAVEN------------------EHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLA 165 (342)
Q Consensus 107 ~~~~~---~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 165 (342)
.+|++ +.+++.+|.++...+ ...+|+..+++.++..|++..+ .+|
T Consensus 98 ~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A 163 (243)
T PRK10866 98 LNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDA 163 (243)
T ss_pred hCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHH
Confidence 99887 456888887754433 1346778888888888875432 111
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhcc
Q psy3701 166 SKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII 245 (342)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
...+..+-. .-..--...|..|.+.|+|..|+.-++.+++..|+.+
T Consensus 164 ~~rl~~l~~---~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~------------------------------- 209 (243)
T PRK10866 164 TKRLVFLKD---RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQ------------------------------- 209 (243)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCc-------------------------------
Confidence 111111110 0112234678889999999999999999999888774
Q ss_pred CCCChHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy3701 246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQ 275 (342)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 275 (342)
...+++..++.+|..+|..++|......
T Consensus 210 --~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 210 --ATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred --hHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 2357888899999999999998876654
No 133
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.37 E-value=2.6e-12 Score=80.84 Aligned_cols=67 Identities=25% Similarity=0.420 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc-cHHHHHHHHHHHhccCC
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN-EHDQAMAAYFNAFNLFK 143 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 143 (342)
++.+|..+|.+++..|++++|+.+|+++++.+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57788888888888888888888888888888888888888888888888 78888888888888876
No 134
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.36 E-value=1.5e-10 Score=85.55 Aligned_cols=202 Identities=14% Similarity=0.088 Sum_probs=131.9
Q ss_pred hccHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHH
Q psy3701 45 LENRALAADCYKGAL-------LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLM 117 (342)
Q Consensus 45 ~~~~~~A~~~~~~~~-------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 117 (342)
..+-++|.-+|+++. +.-|..-+.+.+.+.|.-++++..+|..+...|+++.|.+.|+..++++|....+..+
T Consensus 59 l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN 138 (297)
T COG4785 59 LTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 138 (297)
T ss_pred CChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence 345567777777764 4556666778888899999999999999999999999999999999999998888889
Q ss_pred hhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHH-HHHhhCCCChHHHHHHHHHHHHhcCh
Q psy3701 118 YGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFD-LALSIAHEDPFVIHEMGVIAYQNHNY 196 (342)
Q Consensus 118 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (342)
.|..+..-|++.-|.+.+.+..+.+|++|.--.++-..-. .-++.+|..-+. ++...+ +....|...+.. .|+.
T Consensus 139 Rgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~-k~dP~~A~tnL~qR~~~~d-~e~WG~~iV~~y---Lgki 213 (297)
T COG4785 139 RGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ-KLDPKQAKTNLKQRAEKSD-KEQWGWNIVEFY---LGKI 213 (297)
T ss_pred cceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh-hCCHHHHHHHHHHHHHhcc-HhhhhHHHHHHH---Hhhc
Confidence 9988888999999999999888888887754433322222 234555554443 333322 223333332222 2222
Q ss_pred hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy3701 197 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA 276 (342)
Q Consensus 197 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 276 (342)
.+ ...++++..-..++. . ......++++.+|..+...|+.++|...|+-+
T Consensus 214 S~-e~l~~~~~a~a~~n~-------------~----------------~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 214 SE-ETLMERLKADATDNT-------------S----------------LAEHLTETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred cH-HHHHHHHHhhccchH-------------H----------------HHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 11 223333333222220 0 00111467788888888888888888888887
Q ss_pred HhhCC
Q psy3701 277 LVVAP 281 (342)
Q Consensus 277 l~~~~ 281 (342)
+..+-
T Consensus 264 iannV 268 (297)
T COG4785 264 VANNV 268 (297)
T ss_pred HHHhH
Confidence 76543
No 135
>KOG1915|consensus
Probab=99.36 E-value=7.5e-10 Score=91.21 Aligned_cols=211 Identities=9% Similarity=0.032 Sum_probs=187.7
Q ss_pred HHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHH
Q psy3701 70 LVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPA 149 (342)
Q Consensus 70 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 149 (342)
.+..+.-+...|...|..-..++++..|...|++|+..+..+...|...+.+-+.......|...+.+++.+-|.....|
T Consensus 65 ~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW 144 (677)
T KOG1915|consen 65 QIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW 144 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH
Confidence 34556677889999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHh
Q psy3701 150 LYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNL 229 (342)
Q Consensus 150 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 229 (342)
+....+-..+|+...|.++|++-+...| +..+|......-.+-+..+.|..+|++.+-..|+.
T Consensus 145 yKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v---------------- 207 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLVHPKV---------------- 207 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccH----------------
Confidence 8888888899999999999999999999 46678888888888899999999999999988876
Q ss_pred hhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHhCChHHHHHH
Q psy3701 230 GHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---STFCCIGYIQALTGDLDSAVNY 306 (342)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~ 306 (342)
..|...+..-.+.|+..-|...|++|++.-.++. ......+..-..+..++.|.-.
T Consensus 208 ---------------------~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~i 266 (677)
T KOG1915|consen 208 ---------------------SNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFI 266 (677)
T ss_pred ---------------------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999998755433 3455566666788899999999
Q ss_pred HHHHHhcccCch
Q psy3701 307 FHKTMALKRDDS 318 (342)
Q Consensus 307 ~~~al~~~p~~~ 318 (342)
|+-++..-|.+.
T Consensus 267 ykyAld~~pk~r 278 (677)
T KOG1915|consen 267 YKYALDHIPKGR 278 (677)
T ss_pred HHHHHHhcCccc
Confidence 999999999873
No 136
>PRK11906 transcriptional regulator; Provisional
Probab=99.36 E-value=1.2e-10 Score=96.85 Aligned_cols=133 Identities=11% Similarity=0.062 Sum_probs=120.7
Q ss_pred HHHHHHHHHhC---ChHHHHHHHHHHh---hcCCCcHHHHHHhhhHHHhh---------ccHHHHHHHHHHHhccCCCCc
Q psy3701 82 YAVGCYYYLIG---RSDPARRFLGKAT---SLDKLFLPAWLMYGHSFAVE---------NEHDQAMAAYFNAFNLFKGCH 146 (342)
Q Consensus 82 ~~l~~~~~~~~---~~~~A~~~~~~a~---~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~ 146 (342)
+..|...+..+ ..+.|..+|.+++ .++|....++..++.++... .+..+|.+..+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 66777776655 4578999999999 99999999999999888764 345689999999999999999
Q ss_pred hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701 147 LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214 (342)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 214 (342)
.++..+|.+....++++.|...|++++.++|+.+.+|+..|.+....|+.++|+..++++++++|...
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999873
No 137
>KOG4340|consensus
Probab=99.34 E-value=4.4e-11 Score=92.71 Aligned_cols=187 Identities=16% Similarity=0.049 Sum_probs=155.7
Q ss_pred HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHH
Q psy3701 89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKF 168 (342)
Q Consensus 89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 168 (342)
.+..+|..|++++..-.+.+|.+...+..+|.||....++..|..+|++.-...|......++.+..+++.+.+.+|+.+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999888888899999999999999998
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCC
Q psy3701 169 FDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADK 248 (342)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
.........-...+...-+.+.+..+++..+....++. |. ..
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----p~----------------------------------en 142 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----PS----------------------------------EN 142 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhc----cC----------------------------------CC
Confidence 87765432222334455566677777777776665542 31 11
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 249 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
.+....+.|.+..+.|++++|++-|+.+++...-++..-++++.++.+.|+++.|+++..+.++.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 25788899999999999999999999999999888989999999999999999999988777653
No 138
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.34 E-value=8.5e-12 Score=77.36 Aligned_cols=65 Identities=25% Similarity=0.419 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 254 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
+.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999985
No 139
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.34 E-value=4.4e-11 Score=80.75 Aligned_cols=99 Identities=26% Similarity=0.361 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH
Q psy3701 182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR 261 (342)
Q Consensus 182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (342)
+++.+|.++...|++++|+..++++++..|.+ ..++..+|.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~ 45 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN------------------------------------ADAYYNLAAAYY 45 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc------------------------------------HHHHHHHHHHHH
Confidence 46789999999999999999999999998887 478899999999
Q ss_pred HhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701 262 KLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316 (342)
Q Consensus 262 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 316 (342)
..|++++|+..+++++...|.+..++..+|.++...|++++|...+.++++..|+
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 46 KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999999999999999999998874
No 140
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.33 E-value=3.5e-11 Score=81.23 Aligned_cols=98 Identities=21% Similarity=0.235 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh
Q psy3701 80 AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT 159 (342)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 159 (342)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+...+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35566666666666666666666666666666666666666666666666666666666666666555555666666666
Q ss_pred CCHHHHHHHHHHHHhhCC
Q psy3701 160 NNARLASKFFDLALSIAH 177 (342)
Q Consensus 160 ~~~~~A~~~~~~~~~~~~ 177 (342)
|++++|...+.+++...|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 666666666666555544
No 141
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.33 E-value=1.7e-10 Score=100.65 Aligned_cols=142 Identities=11% Similarity=0.026 Sum_probs=118.6
Q ss_pred hcCCCcHHHH--HHHHHHHHHhCC---hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhh--------ccHHHHHHHHHHH
Q psy3701 72 DLYPDSAIAW--YAVGCYYYLIGR---SDPARRFLGKATSLDKLFLPAWLMYGHSFAVE--------NEHDQAMAAYFNA 138 (342)
Q Consensus 72 ~~~p~~~~~~--~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a 138 (342)
...|.++.+| +..|..+...++ ..+|+.+|+++++++|++..++..++.++... ++...+....+++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3456666655 556777766554 78999999999999999999999888877654 2345667777776
Q ss_pred hcc--CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701 139 FNL--FKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214 (342)
Q Consensus 139 l~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 214 (342)
+.. +|..+.++..+|......|++++|...+++++.++| +..++..+|.++...|++++|+..|++++.++|..+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 664 666777888899999999999999999999999999 588999999999999999999999999999999985
No 142
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.33 E-value=6.2e-11 Score=89.21 Aligned_cols=67 Identities=27% Similarity=0.454 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCC--------------hHHHHHHHHHHHhcccCc
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGD--------------LDSAVNYFHKTMALKRDD 317 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~ 317 (342)
++..+|.++...|++++|+..+++++...|.+...+..+|.++...|+ +++|.+++++++..+|++
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 444444444445555555555555554444444444444444444443 678889999999999887
Q ss_pred h
Q psy3701 318 S 318 (342)
Q Consensus 318 ~ 318 (342)
.
T Consensus 154 ~ 154 (172)
T PRK02603 154 Y 154 (172)
T ss_pred H
Confidence 3
No 143
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.33 E-value=4.1e-11 Score=90.17 Aligned_cols=98 Identities=17% Similarity=0.077 Sum_probs=84.1
Q ss_pred CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHH
Q psy3701 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPAL 150 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 150 (342)
.+..+.+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|.+...+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 44567789999999999999999999999999887653 468999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCHHHHHHHHHH
Q psy3701 151 YVGLECGLTNNARLASKFFDL 171 (342)
Q Consensus 151 ~l~~~~~~~~~~~~A~~~~~~ 171 (342)
.+|.++...|+...+...+++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHH
Confidence 999999998885554444433
No 144
>PRK15331 chaperone protein SicA; Provisional
Probab=99.32 E-value=1.1e-10 Score=83.47 Aligned_cols=110 Identities=23% Similarity=0.224 Sum_probs=102.0
Q ss_pred HHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHH
Q psy3701 70 LVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPA 149 (342)
Q Consensus 70 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 149 (342)
+....++..+..+..|.-++..|++++|...|+-....+|.+++.|..||.++...++|++|+..|..+..++++++...
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 34566677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh
Q psy3701 150 LYVGLECGLTNNARLASKFFDLALSIAHEDP 180 (342)
Q Consensus 150 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 180 (342)
+..|.++..+|+.+.|+..|..++. .|.+.
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 9999999999999999999999998 45443
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.32 E-value=1.6e-10 Score=84.25 Aligned_cols=115 Identities=15% Similarity=0.010 Sum_probs=52.9
Q ss_pred hCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC---chHHHHHHHHHhhhCCHHH
Q psy3701 91 IGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC---HLPALYVGLECGLTNNARL 164 (342)
Q Consensus 91 ~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~ 164 (342)
.++...+...+++.+..+|+. ..+.+.+|.++...|++++|...|++++...|+. ..+.+.++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 344444444444444444443 2233444444444444444444444444443322 1233344444555555555
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHH
Q psy3701 165 ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEA 206 (342)
Q Consensus 165 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 206 (342)
|+..++. ....+..+.++..+|.++...|++++|+..|+++
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5554433 1222233444555566666666666666655554
No 146
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.32 E-value=8.5e-09 Score=82.40 Aligned_cols=211 Identities=23% Similarity=0.241 Sum_probs=185.7
Q ss_pred HHhcCCC--cHHHHHHHHHHHHHhCChHHHHHHHHHHhh--cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC
Q psy3701 70 LVDLYPD--SAIAWYAVGCYYYLIGRSDPARRFLGKATS--LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC 145 (342)
Q Consensus 70 ~~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 145 (342)
.....+. ........+..+...+++..+...+..... ..+.....+...+......+++..++..+.+++...+..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (291)
T COG0457 49 ALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP 128 (291)
T ss_pred HHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc
Confidence 3455554 478888999999999999999999999997 788888999999999999999999999999999998887
Q ss_pred chHHHHHHH-HHhhhCCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhh-cCcccccc
Q psy3701 146 HLPALYVGL-ECGLTNNARLASKFFDLALSIAH---EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ-LGGEIIAD 220 (342)
Q Consensus 146 ~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~ 220 (342)
.......+. ++...|+++.|...+.+++...| .........+..+...++++.++..+.+++...+. .
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------- 201 (291)
T COG0457 129 DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD------- 201 (291)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccc-------
Confidence 666667777 89999999999999999988776 34556667777788899999999999999999887 4
Q ss_pred chhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCCh
Q psy3701 221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDL 300 (342)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 300 (342)
...+..++..+...+++.+|...+.+++...|.....+..++..+...+.+
T Consensus 202 -----------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (291)
T COG0457 202 -----------------------------AEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRY 252 (291)
T ss_pred -----------------------------hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCH
Confidence 478899999999999999999999999999998777788888888877889
Q ss_pred HHHHHHHHHHHhcccC
Q psy3701 301 DSAVNYFHKTMALKRD 316 (342)
Q Consensus 301 ~~A~~~~~~al~~~p~ 316 (342)
+++...+.+++...|.
T Consensus 253 ~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 253 EEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 9999999999999997
No 147
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.32 E-value=7.6e-11 Score=88.44 Aligned_cols=124 Identities=20% Similarity=0.249 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHH
Q psy3701 162 ARLASKFFDLALSIAHED--PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQ 239 (342)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (342)
+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------------------- 69 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------------------- 69 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-------------------------
Confidence 444445554444444443 45667888888888888888888888887765431
Q ss_pred hchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHH-------HhCChH-------HHHH
Q psy3701 240 LGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQA-------LTGDLD-------SAVN 305 (342)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-------~~g~~~-------~A~~ 305 (342)
..+.++.++|.++...|++++|+..+++++.+.|.....+..+|.++. ..|+++ +|..
T Consensus 70 --------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 70 --------DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred --------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 113578888888888888888888888888888888877777777777 666665 5666
Q ss_pred HHHHHHhcccCch
Q psy3701 306 YFHKTMALKRDDS 318 (342)
Q Consensus 306 ~~~~al~~~p~~~ 318 (342)
+|++++..+|++.
T Consensus 142 ~~~~a~~~~p~~~ 154 (168)
T CHL00033 142 YWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhCcccH
Confidence 6677778888654
No 148
>PRK15331 chaperone protein SicA; Provisional
Probab=99.32 E-value=1e-10 Score=83.64 Aligned_cols=121 Identities=15% Similarity=0.040 Sum_probs=94.5
Q ss_pred hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHH
Q psy3701 175 IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN 254 (342)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (342)
+.++..+..+..|.-++..|++++|...|+-....+|.+ ...+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n------------------------------------~~Y~~ 75 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN------------------------------------PDYTM 75 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc------------------------------------HHHHH
Confidence 344455667778888888888888888888888877777 47788
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
.||.++..+|+|++|+..|..+..++++++...+..|.|+..+|+.+.|+.+|+.++. .|.+......-...++.+.
T Consensus 76 GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 76 GLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALK 152 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888 5766665555444444443
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.31 E-value=5e-10 Score=91.20 Aligned_cols=224 Identities=12% Similarity=0.042 Sum_probs=139.5
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
-...+..-|..|...+++++|.++|.++. .++.+ ..........+...+.++... ++++|+.++++++.+
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa-----~~~~~-~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~--- 103 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAA-----DCYEK-LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEI--- 103 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHH-----HHHHH-TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHH-----HHHHH-cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHH---
Confidence 34455568899999999999999999973 22222 121222345566666666555 999999999988753
Q ss_pred cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh-CCHHHHHHHHHHHHhhCCCC------hHHH
Q psy3701 111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT-NNARLASKFFDLALSIAHED------PFVI 183 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~ 183 (342)
|...|++..|-..+ ..+|.+|... |++++|+++|+++....... ..++
T Consensus 104 -----------y~~~G~~~~aA~~~--------------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~ 158 (282)
T PF14938_consen 104 -----------YREAGRFSQAAKCL--------------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECL 158 (282)
T ss_dssp -----------HHHCT-HHHHHHHH--------------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred -----------HHhcCcHHHHHHHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHH
Confidence 44555555554432 2334455555 56666666666665543211 2456
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh
Q psy3701 184 HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL 263 (342)
Q Consensus 184 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (342)
..+|.++...|+|++|+..|+++....-.++ . ........+...+.++...
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~----l-------------------------~~~~~~~~~l~a~l~~L~~ 209 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENN----L-------------------------LKYSAKEYFLKAILCHLAM 209 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC----T-------------------------TGHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhccc----c-------------------------cchhHHHHHHHHHHHHHHc
Confidence 7889999999999999999999887644332 0 0000124566788899999
Q ss_pred hhHHHHHHHHHHHHhhCCCch-----HHHHHHHHHHH--HhCChHHHHHHHHHHHhcccCch
Q psy3701 264 KKYEEALEFHKQALVVAPMKA-----STFCCIGYIQA--LTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 264 g~~~~A~~~~~~al~~~~~~~-----~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
|+...|...+++....+|... .....+-.++. ....+.+|+..|.+..+++|-..
T Consensus 210 ~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~ 271 (282)
T PF14938_consen 210 GDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKT 271 (282)
T ss_dssp T-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHH
Confidence 999999999999999988553 23333444443 34567888888888777766433
No 150
>KOG4648|consensus
Probab=99.31 E-value=2e-12 Score=101.89 Aligned_cols=241 Identities=11% Similarity=-0.000 Sum_probs=172.0
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHH
Q psy3701 36 LLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAW 115 (342)
Q Consensus 36 ~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 115 (342)
-..|+.|+.+|.|++|++||.++ +..+|.++..+.+.+.+|+++.++..|...+..++.++.....+|
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~------------ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAY 168 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTA------------IAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAY 168 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhh------------hccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 35788888899999999999886 488888888888999999999999999999999998888888888
Q ss_pred HHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHH---------HHH
Q psy3701 116 LMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVI---------HEM 186 (342)
Q Consensus 116 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~l 186 (342)
...|.+-...|...+|.+.++.++++.|.+.+..-.++.+- ...++. -+.+..|....+. -.-
T Consensus 169 SRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~----Sl~E~~----I~~KsT~G~~~A~Q~~~Q~l~~K~~ 240 (536)
T KOG4648|consen 169 SRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARIN----SLRERK----IATKSTPGFTPARQGMIQILPIKKP 240 (536)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc----chHhhh----HHhhcCCCCCccccchhhhccccCc
Confidence 88888888889999999999999998888655443333322 111111 0111122211111 122
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701 187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY 266 (342)
Q Consensus 187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (342)
|..+...|.++.++.++.+-+.....+. .+-.+ +..+.+..++
T Consensus 241 G~~Fsk~~~~~~~i~~~~~~~A~~~~~~------------------------------------~L~~~-~~~~~KI~~~ 283 (536)
T KOG4648|consen 241 GYKFSKKAMRSVPVVDVVSPRATIDDSN------------------------------------QLRIS-DEDIDKIFNS 283 (536)
T ss_pred chhhhhhhccccceeEeeccccccCccc------------------------------------cCccc-HHHHHHHhhc
Confidence 4555666677777766665554443331 12222 5667777889
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701 267 EEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE 333 (342)
Q Consensus 267 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 333 (342)
++++.-..+++..+|.........+.+-.-.|...++...++.++.+.|.+..+...+.+.-..+..
T Consensus 284 ~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~~~~ii~ 350 (536)
T KOG4648|consen 284 NCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRKDTKIVP 350 (536)
T ss_pred chhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhhcccccc
Confidence 9999988888888877666666666666777888899999999999999998888777776655543
No 151
>KOG1070|consensus
Probab=99.31 E-value=1.4e-09 Score=100.10 Aligned_cols=216 Identities=14% Similarity=0.153 Sum_probs=189.2
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhh-cCCCc----HHHHHHhhhHHHhhccHHHHHHHHHHH
Q psy3701 64 FKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATS-LDKLF----LPAWLMYGHSFAVENEHDQAMAAYFNA 138 (342)
Q Consensus 64 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 138 (342)
.+-+++++..+|+....|...-..+.+.++.++|++.+++|+. +++.. ...|..+-+....-|.-+.-.+.|++|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 3455667888999999999999999999999999999999986 44443 346766666677778778888999999
Q ss_pred hccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccc
Q psy3701 139 FNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEII 218 (342)
Q Consensus 139 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 218 (342)
.+.... ...+..+..+|...+++++|.++++..++...+...+|..+|..++.+++-+.|...+.+|++.-|...
T Consensus 1524 cqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e---- 1598 (1710)
T KOG1070|consen 1524 CQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE---- 1598 (1710)
T ss_pred HHhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh----
Confidence 887643 457778999999999999999999999999998999999999999999999999999999999998841
Q ss_pred ccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC
Q psy3701 219 ADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG 298 (342)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 298 (342)
........+.+-++.|+.+.+...|+-.+..+|...+.|..+...-.+.|
T Consensus 1599 ------------------------------Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~ 1648 (1710)
T KOG1070|consen 1599 ------------------------------HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHG 1648 (1710)
T ss_pred ------------------------------hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccC
Confidence 14677778888999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcc
Q psy3701 299 DLDSAVNYFHKTMALK 314 (342)
Q Consensus 299 ~~~~A~~~~~~al~~~ 314 (342)
+.+.++..|++++.+.
T Consensus 1649 ~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1649 DIKYVRDLFERVIELK 1664 (1710)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999998864
No 152
>KOG2047|consensus
Probab=99.30 E-value=2.6e-08 Score=85.26 Aligned_cols=247 Identities=11% Similarity=0.039 Sum_probs=128.9
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHH--------HHH-----------------------------------HHHH
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALL--------ADL-----------------------------------FKLA 67 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~--------~~a-----------------------------------~~~~ 67 (342)
-..+|..++..|.+.|.+++|.+.|++++. ... +..+
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 455677799999999999999999999972 000 0011
Q ss_pred H------------HHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhh-cCCCc-----HHHHHHhhhHHHhhccHH
Q psy3701 68 H------------ELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATS-LDKLF-----LPAWLMYGHSFAVENEHD 129 (342)
Q Consensus 68 ~------------~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~-----~~~~~~la~~~~~~g~~~ 129 (342)
+ -++..+|++...|..... +..|+..+-+..|..|+. .+|.. ...|..+|..|...|+.+
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 1 112233444444433322 234455555555555543 34432 344666666666666666
Q ss_pred HHHHHHHHHhccCCCC----chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC------------------ChHHHHHHH
Q psy3701 130 QAMAAYFNAFNLFKGC----HLPALYVGLECGLTNNARLASKFFDLALSIAHE------------------DPFVIHEMG 187 (342)
Q Consensus 130 ~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------~~~~~~~l~ 187 (342)
.|...|+++.+..=.. ..+|...|..-.+..+++.|.++.+++...-.. +..+|..++
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 6666666666543221 234444555555555666666666655432110 123355555
Q ss_pred HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 267 (342)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (342)
......|-++.....|++.+++.-.. +..-.+.|..+....-++
T Consensus 485 DleEs~gtfestk~vYdriidLriaT------------------------------------Pqii~NyAmfLEeh~yfe 528 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIAT------------------------------------PQIIINYAMFLEEHKYFE 528 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCC------------------------------------HHHHHHHHHHHHhhHHHH
Confidence 55555565666666666665554333 344555555555555555
Q ss_pred HHHHHHHHHHhhC--CCchHHHHHHHHHH---HHhCChHHHHHHHHHHHhccc
Q psy3701 268 EALEFHKQALVVA--PMKASTFCCIGYIQ---ALTGDLDSAVNYFHKTMALKR 315 (342)
Q Consensus 268 ~A~~~~~~al~~~--~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~al~~~p 315 (342)
++.+.|++.+.+. |.-.++|...-..+ ..--..+.|+..|+++++..|
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 6666665555543 23333333222111 112244555566666655544
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.30 E-value=1.9e-10 Score=83.81 Aligned_cols=129 Identities=22% Similarity=0.057 Sum_probs=107.9
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHH
Q psy3701 44 ALENRALAADCYKGALLADLFKLAHELVDLYPDS---AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLM 117 (342)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~ 117 (342)
....|+.++..+.......+...++.++..+|+. ..+.+.+|.+++..|++++|...|++++...|+. +.+.+.
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4445666666666666778888899999999988 5678889999999999999999999999987654 457888
Q ss_pred hhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHH
Q psy3701 118 YGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLAL 173 (342)
Q Consensus 118 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 173 (342)
++.++...|++++|+..++.. ...+-.+.++..+|.++...|++++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999999763 3344456677789999999999999999999874
No 154
>PRK11906 transcriptional regulator; Provisional
Probab=99.30 E-value=2.3e-10 Score=95.16 Aligned_cols=146 Identities=8% Similarity=-0.008 Sum_probs=125.5
Q ss_pred HHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHh---------CChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccH
Q psy3701 61 ADLFKLAHELV---DLYPDSAIAWYAVGCYYYLI---------GRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH 128 (342)
Q Consensus 61 ~~a~~~~~~~~---~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 128 (342)
..|+.++.+++ ..+|+.+.++..++.|++.. .+..+|.+..+++++++|.++.++..+|.+....+++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~ 354 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA 354 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence 44555566678 88999999999999999865 2356788999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHHhcChhHHHHHHHHH
Q psy3701 129 DQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI-AYQNHNYTVAENCFMEA 206 (342)
Q Consensus 129 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a 206 (342)
+.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+-....++|+..|-+-
T Consensus 355 ~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 355 KVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999876554444444 44556788888888654
No 155
>KOG3081|consensus
Probab=99.29 E-value=4.6e-09 Score=80.33 Aligned_cols=262 Identities=15% Similarity=0.077 Sum_probs=141.0
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhh
Q psy3701 40 RVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYG 119 (342)
Q Consensus 40 ~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 119 (342)
+-++-.|+|.+++..-.+. ...+...+....+.+.|..+|++..-+.-....- .....+...++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~-------------~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a 79 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKF-------------SSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLA 79 (299)
T ss_pred HHHHHhhHHHHHHHHHHhh-------------ccccchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHH
Confidence 4455678888888776663 3344677788888888888888754433322211 11122333344
Q ss_pred hHHHhhccHHHHHHHHHHHhccC-CC-CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChh
Q psy3701 120 HSFAVENEHDQAMAAYFNAFNLF-KG-CHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT 197 (342)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (342)
.....-++.++-+....+.+... .. +......-+.++...|++++|.+..... .+.++...--.++.++.+.+
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d 154 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFD 154 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHH
Confidence 44433444433333333322221 11 1122233444555556666665555442 23333334445555555566
Q ss_pred HHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhcc-CCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy3701 198 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII-ADKWEPLLNNLGHVNRKLKKYEEALEFHKQA 276 (342)
Q Consensus 198 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 276 (342)
-|.+.++++.+++.+..-.....+|......- ....++.-.+..... .+..+......+.+.+.+|++++|...++.+
T Consensus 155 ~A~~~lk~mq~ided~tLtQLA~awv~la~gg-ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 155 LAEKELKKMQQIDEDATLTQLAQAWVKLATGG-EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHhccc-hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 66666655555544431000111111111111 112222223332221 2333567788888888888888888888888
Q ss_pred HhhCCCchHHHHHHHHHHHHhCChHHHH-HHHHHHHhcccCchhHHhH
Q psy3701 277 LVVAPMKASTFCCIGYIQALTGDLDSAV-NYFHKTMALKRDDSFATTM 323 (342)
Q Consensus 277 l~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~ 323 (342)
+..++++++++.++..+-...|...++. +...+....+|+++.+...
T Consensus 234 L~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 234 LDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHL 281 (299)
T ss_pred HhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHH
Confidence 8888888888888888888888775554 4556666777887765443
No 156
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.29 E-value=1.2e-10 Score=87.42 Aligned_cols=102 Identities=18% Similarity=0.157 Sum_probs=80.4
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG 153 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 153 (342)
....++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++|+..+++++.+.|.....+..+|
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 36778999999999999999999999998886653 458899999999999999999999999999998888888888
Q ss_pred HHHh-------hhCCHH-------HHHHHHHHHHhhCCC
Q psy3701 154 LECG-------LTNNAR-------LASKFFDLALSIAHE 178 (342)
Q Consensus 154 ~~~~-------~~~~~~-------~A~~~~~~~~~~~~~ 178 (342)
.++. ..|+++ +|+..+++++..+|.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 8887 555555 334444444444543
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.28 E-value=2.6e-11 Score=79.42 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=73.1
Q ss_pred HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701 192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE 271 (342)
Q Consensus 192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 271 (342)
.+|+|++|+..++++++..|.++ ....++.+|.++.+.|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~----------------------------------~~~~~~~la~~~~~~~~y~~A~~ 46 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP----------------------------------NSAYLYNLAQCYFQQGKYEEAIE 46 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH----------------------------------HHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCCh----------------------------------hHHHHHHHHHHHHHCCCHHHHHH
Confidence 36899999999999999998530 04678889999999999999999
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701 272 FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT 310 (342)
Q Consensus 272 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 310 (342)
.+++ .+.+|.+...++.+|.++..+|++++|++.++++
T Consensus 47 ~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 47 LLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 9999 8888888899999999999999999999999875
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.27 E-value=2.8e-10 Score=99.38 Aligned_cols=142 Identities=15% Similarity=0.121 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHhHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC--------ChH
Q psy3701 27 QSEMKSALLLLKGRVYEALEN---RALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG--------RSD 95 (342)
Q Consensus 27 ~~~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--------~~~ 95 (342)
+.+..+.-++..|..+...++ +.+|+.+|+++ ++.+|+++.++..++.++.... +..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~A------------i~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~ 401 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEI------------LKSEPDFTYAQAEKALADIVRHSQQPLDEKQLA 401 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH------------HHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 344456666777776665433 56677777775 7999999999999988886643 234
Q ss_pred HHHHHHHHHhhc--CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHH
Q psy3701 96 PARRFLGKATSL--DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLAL 173 (342)
Q Consensus 96 ~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 173 (342)
.+.....+++.+ +|.++.++..+|......|++++|...+++++.++|+ ..++..+|.++...|++++|++.|++++
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566666676664 7777889999999999999999999999999999994 7899999999999999999999999999
Q ss_pred hhCCCChH
Q psy3701 174 SIAHEDPF 181 (342)
Q Consensus 174 ~~~~~~~~ 181 (342)
.++|.++.
T Consensus 481 ~L~P~~pt 488 (517)
T PRK10153 481 NLRPGENT 488 (517)
T ss_pred hcCCCCch
Confidence 99999885
No 159
>KOG0543|consensus
Probab=99.27 E-value=2.1e-10 Score=93.00 Aligned_cols=130 Identities=20% Similarity=0.220 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
....|..+++.|+|..|...|++++..-....+... ..... .......++.|++.|+.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~------------ee~~~---------~~~~k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE------------EEQKK---------AEALKLACHLNLAACYLK 269 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH------------HHHHH---------HHHHHHHHhhHHHHHHHh
Confidence 456789999999999999999999876553310000 00000 000113689999999999
Q ss_pred hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701 263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE 333 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 333 (342)
+++|.+|+..+.+++.++|++..+++..|.++..+|+++.|+..|++++++.|+|..+...|..+.++..+
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888877765543
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.23 E-value=3.6e-11 Score=74.51 Aligned_cols=63 Identities=25% Similarity=0.259 Sum_probs=40.4
Q ss_pred HHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC
Q psy3701 83 AVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC 145 (342)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 145 (342)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666666666666666666666666666666666654
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.23 E-value=7.6e-11 Score=77.17 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=53.0
Q ss_pred hCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHH
Q psy3701 159 TNNARLASKFFDLALSIAHE--DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK 236 (342)
Q Consensus 159 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
.|+++.|+..++++++..|. +...++.+|.+++..|+|++|+..+++ .+.++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~----------------------- 57 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN----------------------- 57 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-----------------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-----------------------
Confidence 46677777777777777664 344566677777777777777777777 5555554
Q ss_pred HHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy3701 237 VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA 276 (342)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 276 (342)
....+.+|.++..+|++++|++.++++
T Consensus 58 -------------~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 58 -------------PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp -------------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 355566677777777777777777654
No 162
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.22 E-value=1.7e-08 Score=96.45 Aligned_cols=210 Identities=13% Similarity=0.038 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC---------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc--
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL---------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH-- 146 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-- 146 (342)
+......+.++...|++++|...+..+....+. .......++.++...|++++|...+++++...+...
T Consensus 409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (903)
T PRK04841 409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY 488 (903)
T ss_pred cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence 445566788888899999999999887654221 123445577888899999999999999988655432
Q ss_pred ---hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccc
Q psy3701 147 ---LPALYVGLECGLTNNARLASKFFDLALSIAHED------PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI 217 (342)
Q Consensus 147 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 217 (342)
.+...+|.++...|++++|...+++++...... ..++..+|.++...|++++|...+++++........
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-- 566 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL-- 566 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc--
Confidence 234557888888999999999999988754321 235567888999999999999999999887554310
Q ss_pred cccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC-----chHHHHHHHH
Q psy3701 218 IADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM-----KASTFCCIGY 292 (342)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~l~~ 292 (342)
...+.....+..+|.++...|++++|...+++++..... ....+..++.
T Consensus 567 --------------------------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 567 --------------------------EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred --------------------------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 000111234567889999999999999999999876332 2455667899
Q ss_pred HHHHhCChHHHHHHHHHHHhccc
Q psy3701 293 IQALTGDLDSAVNYFHKTMALKR 315 (342)
Q Consensus 293 ~~~~~g~~~~A~~~~~~al~~~p 315 (342)
++...|++++|...+.++..+.+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999977643
No 163
>KOG1941|consensus
Probab=99.22 E-value=4.7e-09 Score=83.76 Aligned_cols=240 Identities=19% Similarity=0.171 Sum_probs=178.3
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHhCChHHHHHHHHHHhhc----CC
Q psy3701 37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD---SAIAWYAVGCYYYLIGRSDPARRFLGKATSL----DK 109 (342)
Q Consensus 37 ~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~ 109 (342)
..|.-++...++++|+..+.+.+ ..-.+ ....+-.+..+....|.+++++.+--.-+.. ..
T Consensus 11 ~~g~~Ly~s~~~~~al~~w~~~L------------~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d 78 (518)
T KOG1941|consen 11 EKGLQLYQSNQTEKALQVWTKVL------------EKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED 78 (518)
T ss_pred HHHHhHhcCchHHHHHHHHHHHH------------HHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667778888887777753 22221 2234445567778888888877665444332 21
Q ss_pred C--cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc-----hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh--
Q psy3701 110 L--FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH-----LPALYVGLECGLTNNARLASKFFDLALSIAHEDP-- 180 (342)
Q Consensus 110 ~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-- 180 (342)
. ..+++.++++.+....++.+++.+-...+.+....+ .+...++..+..++.++++++.|+++++....+.
T Consensus 79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~ 158 (518)
T KOG1941|consen 79 SDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA 158 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence 1 246788999999999999999998888877643332 4566689999999999999999999998754432
Q ss_pred ----HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHH
Q psy3701 181 ----FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNL 256 (342)
Q Consensus 181 ----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 256 (342)
.++..+|.++....++++|.-+..++.++..... ...|..-+ ...+++.+
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~----l~d~~~ky----------------------r~~~lyhm 212 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG----LKDWSLKY----------------------RAMSLYHM 212 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC----cCchhHHH----------------------HHHHHHHH
Confidence 4678999999999999999999999998876553 11111111 13577889
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhC------CCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701 257 GHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 257 ~~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 314 (342)
+..+..+|+.-.|.++++++.++. +-.......+|.+|...|+.+.|..-|+++....
T Consensus 213 aValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 213 AVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 999999999999999999998763 2234567789999999999999999999998653
No 164
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.21 E-value=5.8e-08 Score=77.49 Aligned_cols=202 Identities=24% Similarity=0.229 Sum_probs=170.7
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVD--LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
......+..+...+++..+...+... .. ..+.....+...+......+++..++..+.+++...+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKA------------LELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD 127 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHH------------HhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC
Confidence 34445666777777777777777775 33 67888899999999999999999999999999998888
Q ss_pred cHHHHHHhhh-HHHhhccHHHHHHHHHHHhccCC---CCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC-ChHHHHH
Q psy3701 111 FLPAWLMYGH-SFAVENEHDQAMAAYFNAFNLFK---GCHLPALYVGLECGLTNNARLASKFFDLALSIAHE-DPFVIHE 185 (342)
Q Consensus 111 ~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 185 (342)
........+. ++...|+++.|...+.+++...| .........+..+...++++.++..+.+++...+. ....+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 207 (291)
T COG0457 128 PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLN 207 (291)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHH
Confidence 7666666666 89999999999999999988776 23445555666678889999999999999999999 6899999
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701 186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK 265 (342)
Q Consensus 186 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (342)
++..+...+++++|+..+.+++...|.. ...+..++..+...+.
T Consensus 208 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~ 251 (291)
T COG0457 208 LGLLYLKLGKYEEALEYYEKALELDPDN------------------------------------AEALYNLALLLLELGR 251 (291)
T ss_pred hhHHHHHcccHHHHHHHHHHHHhhCccc------------------------------------HHHHhhHHHHHHHcCC
Confidence 9999999999999999999999998874 3567777777777778
Q ss_pred HHHHHHHHHHHHhhCCC
Q psy3701 266 YEEALEFHKQALVVAPM 282 (342)
Q Consensus 266 ~~~A~~~~~~al~~~~~ 282 (342)
++++...+.+++...|.
T Consensus 252 ~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 252 YEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999999999987
No 165
>KOG1941|consensus
Probab=99.21 E-value=3.8e-09 Score=84.31 Aligned_cols=241 Identities=16% Similarity=0.085 Sum_probs=173.7
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcC---C--CcHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701 29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLY---P--DSAIAWYAVGCYYYLIGRSDPARRFLGK 103 (342)
Q Consensus 29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~---p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 103 (342)
.+.-..+..+++.+....++.+++.+-+.. +... | .-..+...+|..+..++.++++++.|++
T Consensus 80 ~~~~ea~lnlar~~e~l~~f~kt~~y~k~~------------l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~ 147 (518)
T KOG1941|consen 80 DFLLEAYLNLARSNEKLCEFHKTISYCKTC------------LGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEK 147 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHH
Confidence 344455666777777777777777665553 2222 2 1235677799999999999999999999
Q ss_pred HhhcCCCcH------HHHHHhhhHHHhhccHHHHHHHHHHHhccCCC----------CchHHHHHHHHHhhhCCHHHHHH
Q psy3701 104 ATSLDKLFL------PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG----------CHLPALYVGLECGLTNNARLASK 167 (342)
Q Consensus 104 a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~ 167 (342)
|+....++. .++..+|..+....++++|..+..++.++-.. ...+.+.++..+..+|+..+|.+
T Consensus 148 A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e 227 (518)
T KOG1941|consen 148 ALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAME 227 (518)
T ss_pred HHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 998754432 46889999999999999999999999887433 12456678899999999999999
Q ss_pred HHHHHHhhC------CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhc
Q psy3701 168 FFDLALSIA------HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLG 241 (342)
Q Consensus 168 ~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (342)
+++++.++. +........+|.+|...|+.+.|..-|+.++..-..-+ ..+
T Consensus 228 ~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g------------drm------------ 283 (518)
T KOG1941|consen 228 CCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG------------DRM------------ 283 (518)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh------------hhH------------
Confidence 999998764 22345677899999999999999999999987654432 011
Q ss_pred hhccCCCChHHHHHHHHHHHHhhhHHH-----HHHHHHHHHhhCCCc------hHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701 242 GEIIADKWEPLLNNLGHVNRKLKKYEE-----ALEFHKQALVVAPMK------ASTFCCIGYIQALTGDLDSAVNYFHKT 310 (342)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~g~~~~-----A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a 310 (342)
....++...+.++....-..+ |+++-++++++...- ...+..++.+|..+|.-++=...+.++
T Consensus 284 ------gqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra 357 (518)
T KOG1941|consen 284 ------GQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRA 357 (518)
T ss_pred ------HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 113455556666554444444 888888877765322 256788899998888777766666554
Q ss_pred H
Q psy3701 311 M 311 (342)
Q Consensus 311 l 311 (342)
-
T Consensus 358 ~ 358 (518)
T KOG1941|consen 358 H 358 (518)
T ss_pred H
Confidence 3
No 166
>KOG0543|consensus
Probab=99.20 E-value=8.1e-10 Score=89.72 Aligned_cols=135 Identities=14% Similarity=0.085 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC----c-----------HHHHHHhhhHHHhhccHHHHHHHHHHHhccCC
Q psy3701 79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKL----F-----------LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK 143 (342)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 143 (342)
......|..+++.|+|..|...|++++..-+. + ..++.+++.++..++++..|+....++|.++|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 34556789999999999999999998875321 1 23588999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHH-HHHHHHHHHhhhhc
Q psy3701 144 GCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVA-ENCFMEALSKVKQL 213 (342)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~al~~~~~~ 213 (342)
++..+++..|.++...|+++.|+..|++++++.|+|..+...+..+-.+..++.+. .+.|.+++...+..
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999988887776654 78888888766544
No 167
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.19 E-value=1.2e-09 Score=86.78 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=79.4
Q ss_pred hHHHHHHHHHH-HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHH
Q psy3701 180 PFVIHEMGVIA-YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGH 258 (342)
Q Consensus 180 ~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 258 (342)
...++..+..+ ...|+|++|+..|++.++..|++. ..+.+++.+|.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---------------------------------~a~~A~y~LG~ 188 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST---------------------------------YQPNANYWLGQ 188 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---------------------------------chHHHHHHHHH
Confidence 34555566554 456778888888888887777762 11357777888
Q ss_pred HHHHhhhHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhH
Q psy3701 259 VNRKLKKYEEALEFHKQALVVAPMK---ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTM 323 (342)
Q Consensus 259 ~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 323 (342)
+|...|++++|+..|+++++..|++ +++++.+|.++..+|++++|...|+++++..|+...+...
T Consensus 189 ~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 189 LNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 8888888888888888888776654 5677777888888888888888888888888877755443
No 168
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.17 E-value=1.8e-09 Score=85.89 Aligned_cols=108 Identities=11% Similarity=0.037 Sum_probs=87.7
Q ss_pred chHHHHHHHHH-hhhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccc
Q psy3701 146 HLPALYVGLEC-GLTNNARLASKFFDLALSIAHED---PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK 221 (342)
Q Consensus 146 ~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 221 (342)
....+..+..+ ...|++++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~------- 214 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP------- 214 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-------
Confidence 34555666654 45688889988899888888887 46888999999999999999999999998888763
Q ss_pred hhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH
Q psy3701 222 WEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST 286 (342)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 286 (342)
...++++.+|.++...|++++|...|+++++..|+...+
T Consensus 215 --------------------------~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 215 --------------------------KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred --------------------------chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 235788888999989999999999999999988887644
No 169
>KOG2053|consensus
Probab=99.17 E-value=1.6e-07 Score=83.43 Aligned_cols=229 Identities=12% Similarity=0.013 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHH
Q psy3701 54 CYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMA 133 (342)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 133 (342)
......+.+|+....++++..|+...+....|..+++.|+.++|..+++..-...+++...+..+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 33444455555666667899999999999999999999999999988888777888888889999999999999999999
Q ss_pred HHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHH-HHHHHHHHHHhcChhHHH---------HHH
Q psy3701 134 AYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV-IHEMGVIAYQNHNYTVAE---------NCF 203 (342)
Q Consensus 134 ~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~---------~~~ 203 (342)
+|+++...+|+ ......+-.+|.+-+.|.+-.+.--+..+..|.++.. |..+..++......+... ...
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 99999999999 7788888889999999988888777778888988765 444444444443333332 233
Q ss_pred HHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH-hhC-C
Q psy3701 204 MEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL-VVA-P 281 (342)
Q Consensus 204 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-~ 281 (342)
++.++... . -...+++. ..-.++..+|++++|.+.+..-+ +.. +
T Consensus 178 ~~~l~~~g-k--------------------------------~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~ 223 (932)
T KOG2053|consen 178 QKLLEKKG-K--------------------------------IESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTS 223 (932)
T ss_pred HHHhccCC-c--------------------------------cchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccc
Confidence 33333220 0 00001111 22345667889999999984433 333 3
Q ss_pred CchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc
Q psy3701 282 MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD 317 (342)
Q Consensus 282 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 317 (342)
.+...-......+...++|.+-.+...+.+...+|+
T Consensus 224 ~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 224 ANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred cchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 344444456677788899999999999999988887
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.16 E-value=2.3e-10 Score=71.66 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=62.5
Q ss_pred HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701 260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327 (342)
Q Consensus 260 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 327 (342)
+...|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++..+..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 35789999999999999999999999999999999999999999999999999999998888777653
No 171
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.16 E-value=9.7e-10 Score=75.84 Aligned_cols=96 Identities=17% Similarity=0.111 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC---CchHHHHH
Q psy3701 79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG---CHLPALYV 152 (342)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l 152 (342)
.+++.+|.++-..|+.++|+.+|++++...... ..+++.+|.++...|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 568899999999999999999999999875443 568889999999999999999999999998888 66777788
Q ss_pred HHHHhhhCCHHHHHHHHHHHHh
Q psy3701 153 GLECGLTNNARLASKFFDLALS 174 (342)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~ 174 (342)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999998887764
No 172
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.12 E-value=3e-09 Score=89.00 Aligned_cols=123 Identities=23% Similarity=0.148 Sum_probs=90.7
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhh
Q psy3701 152 VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH 231 (342)
Q Consensus 152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 231 (342)
+-..+...++++.|++.+++..+.+|+ +...++.++...++..+|+..+.++++..|.+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------------------ 233 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD------------------ 233 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------------------
Confidence 334455567788888888877766653 45567777777777778888888888777766
Q ss_pred hHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701 232 KAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311 (342)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 311 (342)
...+...+..+...++++.|+...+++++..|++...|+.|+.+|...|++++|+..+..+-
T Consensus 234 ------------------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 234 ------------------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred ------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 46777777778888888888888888888888888888888888888888888876666443
Q ss_pred hc
Q psy3701 312 AL 313 (342)
Q Consensus 312 ~~ 313 (342)
-.
T Consensus 296 m~ 297 (395)
T PF09295_consen 296 ML 297 (395)
T ss_pred CC
Confidence 33
No 173
>KOG4234|consensus
Probab=99.11 E-value=1.2e-09 Score=79.83 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
+-.-|.-++..|+|++|..-|..++...|..+ ......+|.+.|.++++
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-------------------------------~e~rsIly~Nraaa~iK 146 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTS-------------------------------TEERSILYSNRAAALIK 146 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-------------------------------HHHHHHHHhhhHHHHHH
Confidence 44568888999999999999999999999874 11124588899999999
Q ss_pred hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701 263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 327 (342)
++.++.|+..+.++++++|.+..++...+.+|.++..+++|++.|+++++.+|....+.....++
T Consensus 147 l~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 147 LRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999988877666544
No 174
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.10 E-value=4e-09 Score=88.25 Aligned_cols=121 Identities=14% Similarity=0.059 Sum_probs=104.8
Q ss_pred HhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcCh
Q psy3701 117 MYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY 196 (342)
Q Consensus 117 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (342)
.+-..+...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.+++...|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3445566678899999999998888875 6667888888889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy3701 197 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA 276 (342)
Q Consensus 197 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 276 (342)
+.|+...++++...|.. ...|..|+.+|...|++++|+..++.+
T Consensus 251 ~lAL~iAk~av~lsP~~------------------------------------f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSE------------------------------------FETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchh------------------------------------HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999988 589999999999999999998777654
No 175
>KOG3081|consensus
Probab=99.10 E-value=1.2e-07 Score=72.83 Aligned_cols=164 Identities=19% Similarity=0.066 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701 79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL 158 (342)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 158 (342)
.....-|.++...|++++|.+...+. .+.++...--.++.++.+.+-|....+++.+++.+. .+..+|..+..
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~ 181 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVK 181 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHH
Confidence 34455578889999999999988773 345566666778899999999999999999988763 34445555443
Q ss_pred h----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701 159 T----NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE 234 (342)
Q Consensus 159 ~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (342)
. +.+.+|.-+|++.-+..|..+.....++.+++.+|+|++|...++.++..++.+
T Consensus 182 la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d--------------------- 240 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD--------------------- 240 (299)
T ss_pred HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC---------------------
Confidence 3 579999999999999888899999999999999999999999999999999988
Q ss_pred HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH-HHHHHHhhCCCchH
Q psy3701 235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE-FHKQALVVAPMKAS 285 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~~~~~~ 285 (342)
++.+.++..+-...|...++.+ .+.+....+|.++.
T Consensus 241 ---------------petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 241 ---------------PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred ---------------HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 5899999999888998877654 44455556677664
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.07 E-value=8.9e-07 Score=71.82 Aligned_cols=266 Identities=12% Similarity=0.032 Sum_probs=200.4
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701 29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSA-IAWYAVGCYYYLIGRSDPARRFLGKATSL 107 (342)
Q Consensus 29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 107 (342)
+...-+..+-++.-+..|+++.|.+-|+.. -.+|+.- -.+..+-.-....|+.+.|+.+-+++-..
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAM-------------l~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~ 183 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAM-------------LDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK 183 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHH-------------hcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh
Confidence 344567777888999999999999999985 3455432 22233333345789999999999999999
Q ss_pred CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC---CCC---chHHHHHHHHHh-hhCCHHHHHHHHHHHHhhCCCCh
Q psy3701 108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF---KGC---HLPALYVGLECG-LTNNARLASKFFDLALSIAHEDP 180 (342)
Q Consensus 108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~---~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~ 180 (342)
.|.-+.++...-...+..|+++.|+++.+...... ++. ..+...-+.... ..-+...|...-.++.++.|+-.
T Consensus 184 Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlv 263 (531)
T COG3898 184 APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLV 263 (531)
T ss_pred ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccc
Confidence 99999999988888999999999999988665432 221 111122222211 22468889999999999999998
Q ss_pred HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHHHHH
Q psy3701 181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNLGHV 259 (342)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 259 (342)
..-..-+..+++.|+..++-.+++.+.+..|... .........-|+...+.++.... ....++..+.....+..
T Consensus 264 Paav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~a 338 (531)
T COG3898 264 PAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEA 338 (531)
T ss_pred hHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 8888999999999999999999999999998772 22223333444555555555555 44667778888999999
Q ss_pred HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH-hCChHHHHHHHHHHHhc
Q psy3701 260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL-TGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 260 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~ 313 (342)
-...|++..|..--+.+....|.. .++..++.+-.. +|+-.++..++.+++.-
T Consensus 339 Alda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 339 ALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 999999999999999998888854 456667777765 49999999999999874
No 177
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.07 E-value=9.5e-10 Score=69.91 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=65.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701 256 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326 (342)
Q Consensus 256 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 326 (342)
|..+|...+++++|++.+++++..+|+++..+..+|.++..+|++.+|+..++++++..|+++.+......
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999999999999999887765543
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.06 E-value=5.3e-09 Score=72.20 Aligned_cols=99 Identities=19% Similarity=0.144 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHH
Q psy3701 181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN 260 (342)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (342)
.+++.+|.++-..|+.++|+..|++++....... ....++..+|.++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~---------------------------------~~~~a~i~lastl 48 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA---------------------------------DRRRALIQLASTL 48 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---------------------------------HHHHHHHHHHHHH
Confidence 4567778888888888888888888877543331 1135777788888
Q ss_pred HHhhhHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701 261 RKLKKYEEALEFHKQALVVAPM---KASTFCCIGYIQALTGDLDSAVNYFHKTMA 312 (342)
Q Consensus 261 ~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 312 (342)
..+|++++|+..+++++...|+ +......++.++...|++++|+..+-.++.
T Consensus 49 r~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 49 RNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888877777 566677778888888888888888777664
No 179
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.06 E-value=5.1e-07 Score=69.58 Aligned_cols=192 Identities=15% Similarity=0.042 Sum_probs=127.9
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG 153 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 153 (342)
.+..|+.-|...++.|++++|++.|+......|.. ..+...++.++...+++++|+...++.+.+.|+++.+-
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d---- 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD---- 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh----
Confidence 46677777888888888888888888877776654 35667777777777777777777777777777755331
Q ss_pred HHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH--------hcChhHHHHHHHHHHHhhhhcCccccccchhhH
Q psy3701 154 LECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ--------NHNYTVAENCFMEALSKVKQLGGEIIADKWEPL 225 (342)
Q Consensus 154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 225 (342)
.+++..|.+++. +.-..+|+..|+..++..|++.-. ..+
T Consensus 109 ---------------------------Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya------~dA 155 (254)
T COG4105 109 ---------------------------YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA------PDA 155 (254)
T ss_pred ---------------------------HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch------hhH
Confidence 122222322221 122356778888888888887400 000
Q ss_pred HHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHhCChHH
Q psy3701 226 LNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---STFCCIGYIQALTGDLDS 302 (342)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~g~~~~ 302 (342)
...+.... ...+.--..+|..|.+.|.+..|+.-++.+++..|+.. +++..+..+|..+|-.++
T Consensus 156 ~~~i~~~~-------------d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~ 222 (254)
T COG4105 156 KARIVKLN-------------DALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDE 222 (254)
T ss_pred HHHHHHHH-------------HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHH
Confidence 00000000 00123445688999999999999999999999877654 678889999999999999
Q ss_pred HHHHHHHHHhcccCch
Q psy3701 303 AVNYFHKTMALKRDDS 318 (342)
Q Consensus 303 A~~~~~~al~~~p~~~ 318 (342)
|...-.-.-.-.|+++
T Consensus 223 a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 223 AKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHhcCCCCc
Confidence 9887655444556665
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=99.00 E-value=1.7e-07 Score=68.06 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=31.2
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHh-hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhh
Q psy3701 150 LYVGLECGLTNNARLASKFFDLALS-IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212 (342)
Q Consensus 150 ~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 212 (342)
+.++......|++.+|...|++++. +..+++..+..++...+..+++..|...+++..+.+|.
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 3444444555555555555544443 33444555555555555555555555555555554443
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.98 E-value=2.3e-07 Score=67.31 Aligned_cols=153 Identities=12% Similarity=-0.019 Sum_probs=110.4
Q ss_pred HHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhc-cCCCCchHHHHHHHHHhhhCCHHHH
Q psy3701 87 YYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFN-LFKGCHLPALYVGLECGLTNNARLA 165 (342)
Q Consensus 87 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~l~~~~~~~~~~~~A 165 (342)
...+.=|.+....-..+.+...|.. .-.+.+|......|++.+|...|++++. +..+++..+..++......+++..|
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 3334445555555556666666653 3466778888888888888888888775 3445566677778888888888888
Q ss_pred HHHHHHHHhhCCC--ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchh
Q psy3701 166 SKFFDLALSIAHE--DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGE 243 (342)
Q Consensus 166 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
...+++..+.+|. .++....+|.++...|++.+|...|+.++...|..
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~------------------------------ 193 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP------------------------------ 193 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH------------------------------
Confidence 8888888887764 46677788888888888888888888888887776
Q ss_pred ccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy3701 244 IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 277 (342)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 277 (342)
......+..+.++|+.++|...+....
T Consensus 194 -------~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 194 -------QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred -------HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 466667777888887777766555544
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.97 E-value=1.9e-09 Score=67.48 Aligned_cols=62 Identities=11% Similarity=0.046 Sum_probs=28.7
Q ss_pred hccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701 125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM 186 (342)
Q Consensus 125 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 186 (342)
.|++++|+..|++++..+|++..+++.++.++...|++++|...+++++..+|+++.++..+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444333
No 183
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.97 E-value=2e-08 Score=77.90 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
.+..|.-++..|+|..|...|...++..|++. ..+.+++.||.+++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~---------------------------------~~~nA~yWLGe~~y~ 190 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST---------------------------------YTPNAYYWLGESLYA 190 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---------------------------------ccchhHHHHHHHHHh
Confidence 67888889999999999999999999999874 335799999999999
Q ss_pred hhhHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhH
Q psy3701 263 LKKYEEALEFHKQALVVAPMK---ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTM 323 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 323 (342)
+|++++|...|..+++..|++ +++++.+|.+..++|+.++|...|+++++..|+.+.+...
T Consensus 191 qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 191 QGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred cccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999988765 5889999999999999999999999999999998866543
No 184
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.96 E-value=4.8e-08 Score=68.57 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHhCC---------------hHHHHHHHHHHHhc
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---STFCCIGYIQALTGD---------------LDSAVNYFHKTMAL 313 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~g~---------------~~~A~~~~~~al~~ 313 (342)
+...+|.+|.+.|++++|+..+++-++++|.++ .+++..|.++..+.. ..+|...|++.++.
T Consensus 49 AqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 49 AQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444433 234444444444433 56888899999999
Q ss_pred ccCchhHH
Q psy3701 314 KRDDSFAT 321 (342)
Q Consensus 314 ~p~~~~~~ 321 (342)
.|++..+.
T Consensus 129 yP~S~ya~ 136 (142)
T PF13512_consen 129 YPNSEYAA 136 (142)
T ss_pred CcCChhHH
Confidence 99887554
No 185
>KOG2047|consensus
Probab=98.96 E-value=5.4e-07 Score=77.52 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=130.9
Q ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc----H
Q psy3701 42 YEALENRALAADCYKGALLADLFKLAHELVDLYPDS-----AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF----L 112 (342)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~ 112 (342)
-...|+..+-+..|..+ +...+|.. ...|...|..|...|+.+.|...|+++....-.. .
T Consensus 357 ~l~e~~~~~~i~tyteA-----------v~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa 425 (835)
T KOG2047|consen 357 KLYEGNAAEQINTYTEA-----------VKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLA 425 (835)
T ss_pred hhhcCChHHHHHHHHHH-----------HHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHH
Confidence 34456666667777776 35567753 4689999999999999999999999999875432 5
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHHhccCCC------------------CchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701 113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG------------------CHLPALYVGLECGLTNNARLASKFFDLALS 174 (342)
Q Consensus 113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 174 (342)
.+|...|..-....+++.|+++.+++...-.. +...|..++......|-++.....|++++.
T Consensus 426 ~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 426 EVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 68899999999999999999999998865321 223455567777778899999999999999
Q ss_pred hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 175 IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
+.--.|.+-.+.|..+....-++++.+.|++.+.+.+-.
T Consensus 506 LriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 506 LRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred HhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 988889999999999999999999999999999987654
No 186
>KOG3617|consensus
Probab=98.94 E-value=1.7e-06 Score=76.71 Aligned_cols=259 Identities=16% Similarity=0.106 Sum_probs=153.9
Q ss_pred HhHHHHhhccHHHHHHHHHHHH--------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701 38 KGRVYEALENRALAADCYKGAL--------------LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGK 103 (342)
Q Consensus 38 ~g~~~~~~~~~~~A~~~~~~~~--------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 103 (342)
.+.....+|..++|..+|++.. +++|+++++.- ..-.--..+++.+..+...++.+.|+++|++
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~--DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETK--DRIHLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhc--cceehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 3455667788888888888764 34555544421 1112345788999999999999999999998
Q ss_pred Hh----------hcCCC----------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccC---------------------
Q psy3701 104 AT----------SLDKL----------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--------------------- 142 (342)
Q Consensus 104 a~----------~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------- 142 (342)
+- .-+|. ++..|...|......|+.+.|+.+|..+-...
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~e 963 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEE 963 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHh
Confidence 62 22332 34567778888899999999999998876442
Q ss_pred CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh------CCCCh---HH-----------HHHHHHHHHHhc-ChhHHHH
Q psy3701 143 KGCHLPALYVGLECGLTNNARLASKFFDLALSI------AHEDP---FV-----------IHEMGVIAYQNH-NYTVAEN 201 (342)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~---~~-----------~~~l~~~~~~~~-~~~~A~~ 201 (342)
..+..+.+.+|+.|...|+..+|+..|.++-.. ...+. .. ....+..|...| ..+.|+.
T Consensus 964 sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVm 1043 (1416)
T KOG3617|consen 964 SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVM 1043 (1416)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHH
Confidence 224455666666777777777776666654321 11110 00 111222333333 4444444
Q ss_pred HHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHH------
Q psy3701 202 CFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ------ 275 (342)
Q Consensus 202 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------ 275 (342)
+|.++=-+...- ...+ ....-.++....+.......+.++..-+..+....+|++|...+-.
T Consensus 1044 LYHkAGm~~kAL----------elAF--~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~ 1111 (1416)
T KOG3617|consen 1044 LYHKAGMIGKAL----------ELAF--RTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSG 1111 (1416)
T ss_pred HHHhhcchHHHH----------HHHH--hhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444431111100 0000 0000012222222234445577888888888889999998876544
Q ss_pred HHhhC----------------CC---------chHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701 276 ALVVA----------------PM---------KASTFCCIGYIQALTGDLDSAVNYFHKT 310 (342)
Q Consensus 276 al~~~----------------~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~a 310 (342)
++++. |. ...++..+|.++.++|.|..|-+-|.++
T Consensus 1112 AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1112 ALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 33321 11 1356788999999999999998888775
No 187
>KOG4648|consensus
Probab=98.93 E-value=7e-09 Score=82.29 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
.-..|.-|+++|+|++|+.+|.+++..+|.++ ..+.+.+.+|.+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np------------------------------------V~~~NRA~AYlk 143 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP------------------------------------VYHINRALAYLK 143 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCc------------------------------------cchhhHHHHHHH
Confidence 45679999999999999999999999999884 789999999999
Q ss_pred hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701 263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 327 (342)
++++..|..-++.++.++.....+|...+.+-..+|+..+|.+.++.++++.|++.+....++.+
T Consensus 144 ~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 144 QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988766655544
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.93 E-value=8.7e-09 Score=65.44 Aligned_cols=62 Identities=18% Similarity=0.098 Sum_probs=30.9
Q ss_pred HHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch
Q psy3701 86 CYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL 147 (342)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 147 (342)
.+|+..+++++|+.++++++.++|+++..|..+|.++...|++++|+..++++++..|+++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 34444555555555555555555555555555555555555555555555555555444433
No 189
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.93 E-value=6.8e-08 Score=75.05 Aligned_cols=107 Identities=17% Similarity=0.108 Sum_probs=79.4
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhH
Q psy3701 149 ALYVGLECGLTNNARLASKFFDLALSIAHED---PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPL 225 (342)
Q Consensus 149 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 225 (342)
.+..+.-++..|+|.+|...|..-++..|++ +.+++.||.+++.+|++++|...|..+.+-.|+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~----------- 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP----------- 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC-----------
Confidence 4556666777777777777777777777664 46677788888888888888888888887777663
Q ss_pred HHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHH
Q psy3701 226 LNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 288 (342)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 288 (342)
..++.++.+|.+..++|+.++|...|+++++..|+...+..
T Consensus 213 ----------------------KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 213 ----------------------KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred ----------------------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 33577888888888888888888888888888887765543
No 190
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.92 E-value=8e-08 Score=67.45 Aligned_cols=104 Identities=17% Similarity=0.078 Sum_probs=80.6
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc---hHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH---LPAL 150 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~ 150 (342)
.+..++.-|...+..|+|++|++.|+......|.. ..+.+.++.+|...+++++|+..+++.++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 46778888999999999999999999988887754 56788899999999999999999999999988865 4566
Q ss_pred HHHHHHhhhCC---------------HHHHHHHHHHHHhhCCCCh
Q psy3701 151 YVGLECGLTNN---------------ARLASKFFDLALSIAHEDP 180 (342)
Q Consensus 151 ~l~~~~~~~~~---------------~~~A~~~~~~~~~~~~~~~ 180 (342)
..|.++..+.. ...|...|++.+...|++.
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 67777766654 5556666666666666554
No 191
>KOG1070|consensus
Probab=98.88 E-value=5e-07 Score=84.05 Aligned_cols=196 Identities=13% Similarity=0.005 Sum_probs=165.3
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC-CCCc----hHHHHHHHHHhhhCCHHHHHH
Q psy3701 93 RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF-KGCH----LPALYVGLECGLTNNARLASK 167 (342)
Q Consensus 93 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~ 167 (342)
+-.+..+.|++.+.-+|+..-.|+.+..-+...++.++|.+..++++..- +... ..|..+-+....-|.-+.-.+
T Consensus 1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 34456778899999999999999999999999999999999999999753 3322 233333333444466777888
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCC
Q psy3701 168 FFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIAD 247 (342)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
.|+++.+.. +...++..|..+|...+++++|.++++..++...+.
T Consensus 1519 VFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~---------------------------------- 1563 (1710)
T KOG1070|consen 1519 VFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT---------------------------------- 1563 (1710)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch----------------------------------
Confidence 899988765 345678899999999999999999999999998855
Q ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701 248 KWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM--KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS 325 (342)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 325 (342)
...|..+|..++++.+-+.|...+.+|++.-|. +.......+.+.++.|+.+.++..|+..+.-+|.-.+.|..+.
T Consensus 1564 --~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1564 --RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred --hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 589999999999999999999999999999997 7788888999999999999999999999999999988887654
No 192
>KOG2471|consensus
Probab=98.87 E-value=5.4e-07 Score=75.10 Aligned_cols=117 Identities=19% Similarity=0.136 Sum_probs=96.2
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD--------SAIAWYAVGCYYYLIGRSDPARRFLG 102 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~ 102 (342)
.+..++++.+.++..|++.+|.+.+.... +...|. ....|.++|.++++.|.|.-+..+|.
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sn-----------i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~ 307 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSN-----------IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFL 307 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcc-----------cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHH
Confidence 34566788999999999999999988763 333443 34567899999999999999999999
Q ss_pred HHhh-c--------CC---------CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701 103 KATS-L--------DK---------LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL 158 (342)
Q Consensus 103 ~a~~-~--------~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 158 (342)
+|++ . .| ...+..++.|..+...|++-.|.++|.++......+|..|..++.++..
T Consensus 308 kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 308 KALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9995 1 11 2356789999999999999999999999999999999999999887653
No 193
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.87 E-value=6.5e-07 Score=69.03 Aligned_cols=194 Identities=17% Similarity=0.083 Sum_probs=137.9
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHh
Q psy3701 29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS---AIAWYAVGCYYYLIGRSDPARRFLGKAT 105 (342)
Q Consensus 29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 105 (342)
......++..|......|++++|++.|+.. ...+|.. ..+...++.++++.+++++|+...++-+
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l------------~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi 98 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEAL------------DSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI 98 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------------HHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 345678889999999999999999999995 4666654 6788999999999999999999999999
Q ss_pred hcCCCcHH---HHHHhhhHHHh--------hccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701 106 SLDKLFLP---AWLMYGHSFAV--------ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALS 174 (342)
Q Consensus 106 ~~~~~~~~---~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 174 (342)
.+.|.+++ +++..|.++.. ..-..+|+..++..+...|++..+--....+ ..++..
T Consensus 99 ~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~-- 165 (254)
T COG4105 99 RLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDA-- 165 (254)
T ss_pred HhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHH--
Confidence 99998754 46666666443 2234567777777777777754332111111 011111
Q ss_pred hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHH
Q psy3701 175 IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN 254 (342)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (342)
-..--..+|..|.+.|.+-.|+..++.+++..|+.+ ...+++.
T Consensus 166 ----LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~---------------------------------~~~eaL~ 208 (254)
T COG4105 166 ----LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS---------------------------------AVREALA 208 (254)
T ss_pred ----HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc---------------------------------chHHHHH
Confidence 111234678889999999999999999998866652 2246788
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCch
Q psy3701 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKA 284 (342)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 284 (342)
.+..+|..+|-.++|...-.-.-...|++.
T Consensus 209 ~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 209 RLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 888999999999988776544333345443
No 194
>KOG4234|consensus
Probab=98.87 E-value=8.5e-08 Score=70.36 Aligned_cols=112 Identities=9% Similarity=-0.082 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH-----HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL-----PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV 152 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 152 (342)
+..+..-|.-++..|+|++|..-|..|+.+.|..+ ..+.+.|.+++.++.++.|+..+.++++++|.+..++...
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 34456668889999999999999999999988753 3577889999999999999999999999999999999999
Q ss_pred HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy3701 153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI 189 (342)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 189 (342)
+.+|.++..+++|+.-|.++++.+|....+...++++
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 9999999999999999999999999877665555444
No 195
>KOG2796|consensus
Probab=98.86 E-value=2.3e-06 Score=65.78 Aligned_cols=155 Identities=13% Similarity=0.121 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhcChhHHHHHHHHH
Q psy3701 128 HDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIA-HEDPFVIHEMGVIAYQNHNYTVAENCFMEA 206 (342)
Q Consensus 128 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 206 (342)
.+..++.+++-+. .+.+.+..++.-.|.|.-....+.+.++.+ |.++.....+|.+.++.|+.+.|..+|+++
T Consensus 165 ~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 165 EESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3556666665543 356667888888899999999999999988 678888899999999999999999999976
Q ss_pred HHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH
Q psy3701 207 LSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST 286 (342)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 286 (342)
-+.+..-. .-.....+..+.+.++...+++.+|...+.+++..+|.++.+
T Consensus 239 ek~~~kL~------------------------------~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 239 EKVTQKLD------------------------------GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred HHHHhhhh------------------------------ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 64433221 011113567778888888999999999999999999999999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 287 FCCIGYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
..+.+.|..-+|+..+|++..+.+++..|...
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999765
No 196
>KOG1586|consensus
Probab=98.84 E-value=1.5e-06 Score=65.53 Aligned_cols=136 Identities=14% Similarity=0.068 Sum_probs=100.1
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCChHH------HHHHHHHHHHh-cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHh
Q psy3701 157 GLTNNARLASKFFDLALSIAHEDPFV------IHEMGVIAYQN-HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNL 229 (342)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 229 (342)
++..++++|+.++++++++..+-... +..+|.+|... .++++|+.+|+++-+......
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee--------------- 148 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE--------------- 148 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh---------------
Confidence 34458888888888888876554332 44788888765 899999999999877654442
Q ss_pred hhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch-------HHHHHHHHHHHHhCChHH
Q psy3701 230 GHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA-------STFCCIGYIQALTGDLDS 302 (342)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~l~~~~~~~g~~~~ 302 (342)
........+...+..-...++|.+|+..|++.....-++. ..++.-|.|+.-..+.-.
T Consensus 149 ---------------s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~ 213 (288)
T KOG1586|consen 149 ---------------SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVN 213 (288)
T ss_pred ---------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHH
Confidence 0001124566677777889999999999999887655443 345667888888899999
Q ss_pred HHHHHHHHHhcccCchhHHh
Q psy3701 303 AVNYFHKTMALKRDDSFATT 322 (342)
Q Consensus 303 A~~~~~~al~~~p~~~~~~~ 322 (342)
+...+++-.+++|.....+.
T Consensus 214 a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 214 AQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred HHHHHHHHHhcCCcccccHH
Confidence 99999999999998776543
No 197
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.81 E-value=9e-09 Score=66.31 Aligned_cols=72 Identities=29% Similarity=0.345 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHH
Q psy3701 179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGH 258 (342)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 258 (342)
-..++..+|.++..+|++++|+.+|++++++....+ ...+..+.++.++|.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----------------------------~~~~~~a~~~~~lg~ 54 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG-----------------------------DDHPDTANTLNNLGE 54 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-----------------------------THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC-----------------------------CCCHHHHHHHHHHHH
Confidence 356789999999999999999999999998843331 011122578999999
Q ss_pred HHHHhhhHHHHHHHHHHHHhh
Q psy3701 259 VNRKLKKYEEALEFHKQALVV 279 (342)
Q Consensus 259 ~~~~~g~~~~A~~~~~~al~~ 279 (342)
++...|++++|++++++++++
T Consensus 55 ~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 55 CYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999875
No 198
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.81 E-value=2.9e-08 Score=82.79 Aligned_cols=69 Identities=16% Similarity=0.092 Sum_probs=65.4
Q ss_pred cCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH---HHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 245 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST---FCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
..|..+..++++|.+|...|+|++|+..|+++++++|++..+ |+++|.+|..+|+.++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466778999999999999999999999999999999999854 999999999999999999999999997
No 199
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.81 E-value=2.3e-08 Score=83.41 Aligned_cols=71 Identities=17% Similarity=0.079 Sum_probs=67.0
Q ss_pred hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH---HHHhhhHHHhhccHHHHHHHHHHHhccC
Q psy3701 72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA---WLMYGHSFAVENEHDQAMAAYFNAFNLF 142 (342)
Q Consensus 72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~ 142 (342)
..+|+++..|+++|..++..|++++|+..|+++++++|++.++ |+++|.+|..+|++++|+.++++++++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999999865 9999999999999999999999999973
No 200
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.79 E-value=1.1e-08 Score=65.81 Aligned_cols=67 Identities=22% Similarity=0.322 Sum_probs=53.2
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc----CCC---cHHHHHHhhhHHHhhccHHHHHHHHHHHhcc
Q psy3701 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL----DKL---FLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141 (342)
Q Consensus 75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 141 (342)
|+-+.++..+|.+|...|++++|+.+|++++++ .++ ...++..+|.++...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556778899999999999999999999999865 112 2456788888888889999998888888764
No 201
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.77 E-value=2.2e-07 Score=67.39 Aligned_cols=96 Identities=21% Similarity=0.277 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh----------
Q psy3701 196 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK---------- 265 (342)
Q Consensus 196 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------- 265 (342)
++.|.+.++.....+|.+ ++.+++.|.++..+.+
T Consensus 7 FE~ark~aea~y~~nP~D------------------------------------adnL~~WG~ALLELAqfk~g~es~~m 50 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD------------------------------------ADNLTNWGGALLELAQFKQGPESKKM 50 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-------------------------------------HHHHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh------------------------------------HHHHHHHHHHHHHHHhccCcchHHHH
Confidence 577888888888888888 5788888888766543
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCC-----------hHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701 266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGD-----------LDSAVNYFHKTMALKRDDSFATTMLSYV 327 (342)
Q Consensus 266 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 327 (342)
+++|+.-|++++.++|+..++++++|.++...+. |++|..+|+++.+.+|++...+..|..+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 5678889999999999999999999999986653 7889999999999999999877766544
No 202
>KOG4555|consensus
Probab=98.72 E-value=8.5e-07 Score=60.42 Aligned_cols=97 Identities=23% Similarity=0.189 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
+-..|..+...|+.+.|++.|.+++.+.|.. +.+|++.+.++.-
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~r------------------------------------aSayNNRAQa~RL 89 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPER------------------------------------ASAYNNRAQALRL 89 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccc------------------------------------hHhhccHHHHHHH
Confidence 4456788889999999999999999999999 5899999999999
Q ss_pred hhhHHHHHHHHHHHHhhCCCch----HHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701 263 LKKYEEALEFHKQALVVAPMKA----STFCCIGYIQALTGDLDSAVNYFHKTMALKR 315 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 315 (342)
+|+.++|+.-+++++++..+.. .++...|.+|...|+-+.|...|+.+-++..
T Consensus 90 q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 90 QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 9999999999999999865433 5688899999999999999999999877643
No 203
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.70 E-value=7.8e-07 Score=64.62 Aligned_cols=96 Identities=20% Similarity=0.089 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC----------hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhh
Q psy3701 162 ARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN----------YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH 231 (342)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 231 (342)
++.|.+.++.....+|.+++.+++-|.++..+.+ +++|+.-|++++.++|+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~------------------ 68 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK------------------ 68 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-------------------
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch------------------
Confidence 5667777777777777777777777777665533 467888888889999988
Q ss_pred hHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh-----------HHHHHHHHHHHHhhCCCchHHHHHHHHH
Q psy3701 232 KAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-----------YEEALEFHKQALVVAPMKASTFCCIGYI 293 (342)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~l~~~ 293 (342)
..++.++|+++...+. |++|..+|+++...+|++......|..+
T Consensus 69 ------------------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 69 ------------------HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp ------------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 5888888888876654 7889999999999999987655554443
No 204
>KOG4555|consensus
Probab=98.69 E-value=5.8e-07 Score=61.22 Aligned_cols=99 Identities=14% Similarity=0.022 Sum_probs=77.8
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhh
Q psy3701 152 VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH 231 (342)
Q Consensus 152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 231 (342)
-|......|+.+.|++.|.+++.+.|..+.++++.+..+.-+|+.++|+.-+.+++++.....
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t----------------- 111 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT----------------- 111 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc-----------------
Confidence 466677778888888888888888888888888888888888888888888888888765442
Q ss_pred hHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Q psy3701 232 KAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 282 (342)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 282 (342)
.....++...|.+|...|+.+.|..-|+.+-++...
T Consensus 112 ---------------rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 112 ---------------RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred ---------------hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 111357778888888888888888888888776554
No 205
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.67 E-value=9.3e-06 Score=68.40 Aligned_cols=208 Identities=10% Similarity=-0.011 Sum_probs=139.7
Q ss_pred HHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCC-------------------
Q psy3701 83 AVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK------------------- 143 (342)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------- 143 (342)
.+..-..+..+.+.-++..++|++++|+.+.+|..|+.-. .....+|..+++++++...
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 4445556677888888888888888888888888877521 2234555556655554411
Q ss_pred ----C--CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhh-hhcC
Q psy3701 144 ----G--CHLPALYVGLECGLTNNARLASKFFDLALSIAHE--DPFVIHEMGVIAYQNHNYTVAENCFMEALSKV-KQLG 214 (342)
Q Consensus 144 ----~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~ 214 (342)
. ...+...+|++..+.|+.++|++.++..++..|. +..++.++..++...++|.++...+.+.-++. |++
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS- 329 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS- 329 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch-
Confidence 0 1233456899999999999999999999988775 45688999999999999999999988853221 222
Q ss_pred ccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH-------------Hhh---hHHHHHHHHHHHHh
Q psy3701 215 GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR-------------KLK---KYEEALEFHKQALV 278 (342)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g---~~~~A~~~~~~al~ 278 (342)
+...+.-+..-. +.| --..|++.+.+|++
T Consensus 330 -----------------------------------Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve 374 (539)
T PF04184_consen 330 -----------------------------------ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE 374 (539)
T ss_pred -----------------------------------HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH
Confidence 222222222111 111 12357889999999
Q ss_pred hCCCchHHHHHHH------HHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701 279 VAPMKASTFCCIG------YIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE 329 (342)
Q Consensus 279 ~~~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 329 (342)
.+|.-+..+..+- .-..+.|+ .+|+.+---.++.-.+-+.+...|.-..+
T Consensus 375 fNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~veGAL~lL~~twe 430 (539)
T PF04184_consen 375 FNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRVEGALNLLHCTWE 430 (539)
T ss_pred hCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHHHHHHHHhc
Confidence 9998776544321 12345565 78888877777777667777777776665
No 206
>KOG2610|consensus
Probab=98.66 E-value=8e-06 Score=65.19 Aligned_cols=165 Identities=14% Similarity=-0.030 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc-CCCCch---HHHHHHHHH
Q psy3701 81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL-FKGCHL---PALYVGLEC 156 (342)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~---~~~~l~~~~ 156 (342)
....+.+.+..|++.+|...+++.++-.|.+.-++..--.++..+|+...-...+++.+.. +|+.|- ..-.++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3444566778899999999999999999999888888788888999999999999999877 666543 333466778
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHH
Q psy3701 157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK 236 (342)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
...|-+++|.+.-+++++++|.+..+....+.++...|++.++.+...+.-..-... |..
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s--------~ml------------ 245 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS--------WML------------ 245 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh--------hHH------------
Confidence 889999999999999999999999999999999999999999999887754332221 000
Q ss_pred HHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy3701 237 VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 277 (342)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 277 (342)
...-|-..+.++...+.|+.|++.|.+-+
T Consensus 246 ------------asHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 246 ------------ASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred ------------HhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 02334456777777888888888887654
No 207
>KOG1585|consensus
Probab=98.65 E-value=4.3e-05 Score=58.33 Aligned_cols=200 Identities=12% Similarity=0.026 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc------HHHHHHhhhHHHhhccHHHHHHHHHHHhccC-----CCCc
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF------LPAWLMYGHSFAVENEHDQAMAAYFNAFNLF-----KGCH 146 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~ 146 (342)
...+..-+.+|...+++++|..++.++.+-..++ ..++-..+........+.++..+++++..+. |+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 3445555677777888999999888888544333 2345566777778888889999999888763 2222
Q ss_pred hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701 147 LPALYVGLECGLTNNARLASKFFDLALSIAHED------PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD 220 (342)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 220 (342)
..-...+--.....++++|+++|++++.+...+ .+.+...+.++.+..++++|-..+.+-........
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~------ 184 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD------ 184 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh------
Confidence 222223333556678999999999988765443 23456678888899999998888777544332220
Q ss_pred chhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHH
Q psy3701 221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA----PMKASTFCCIGYIQAL 296 (342)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~ 296 (342)
.-+.....+.....++....+|..|...++...++. |++..+..+|-.. +.
T Consensus 185 ------------------------~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd 239 (308)
T KOG1585|consen 185 ------------------------AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YD 239 (308)
T ss_pred ------------------------hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hc
Confidence 011112345555666777789999999999977653 4445555555444 35
Q ss_pred hCChHHHHHHHH
Q psy3701 297 TGDLDSAVNYFH 308 (342)
Q Consensus 297 ~g~~~~A~~~~~ 308 (342)
.|+.++....+.
T Consensus 240 ~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 240 EGDIEEIKKVLS 251 (308)
T ss_pred cCCHHHHHHHHc
Confidence 677776665543
No 208
>KOG4507|consensus
Probab=98.64 E-value=2.2e-06 Score=73.18 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 327 (342)
....+++.++...|-..+|-.++.+++.+....+-.++.+|..+..+.+.+.|++.|++++..+|+++.....|..+
T Consensus 643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 643 VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 45678999999999999999999999999988889999999999999999999999999999999999877665443
No 209
>KOG2471|consensus
Probab=98.63 E-value=1.4e-06 Score=72.75 Aligned_cols=150 Identities=18% Similarity=0.140 Sum_probs=116.7
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHH-HHhhhhcCccccccchhhHHHHh
Q psy3701 151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEA-LSKVKQLGGEIIADKWEPLLNNL 229 (342)
Q Consensus 151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~ 229 (342)
+....+..+.+...+..-.+.+..+..+.+......+..++..|++.+|.+.+... +...|...
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~--------------- 275 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGT--------------- 275 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCcc---------------
Confidence 34445666777777777777777777888888999999999999999999887653 11111110
Q ss_pred hhhHHHHHHHhchhccCCC--ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---------CC---------CchHHHHH
Q psy3701 230 GHKAEDKVKQLGGEIIADK--WEPLLNNLGHVNRKLKKYEEALEFHKQALVV---------AP---------MKASTFCC 289 (342)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~~---------~~~~~~~~ 289 (342)
..|. ....|+++|.+++++|.|.-+..+|.++++. .| ....+.++
T Consensus 276 ---------------~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYN 340 (696)
T KOG2471|consen 276 ---------------ITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYN 340 (696)
T ss_pred ---------------ccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHh
Confidence 0110 1346789999999999999999999999961 11 23478899
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 290 IGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 290 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
.|..|...|++-.|.++|.+++.....+|..|..|+.|.-.
T Consensus 341 cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 341 CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988754
No 210
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.62 E-value=3.8e-06 Score=68.32 Aligned_cols=138 Identities=15% Similarity=0.106 Sum_probs=98.2
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh-hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy3701 114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL-TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ 192 (342)
Q Consensus 114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (342)
+|..+.....+.+..+.|...|.++.+..+.....|...|.+... .++.+.|.++|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 567777777777888888888888886666667777777777555 4555558888888888888888888888888888
Q ss_pred hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHH
Q psy3701 193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEF 272 (342)
Q Consensus 193 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 272 (342)
.|+.+.|..+|++++..-+... ....+|......-.+.|+.+.....
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~---------------------------------~~~~iw~~~i~fE~~~Gdl~~v~~v 129 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEK---------------------------------QSKKIWKKFIEFESKYGDLESVRKV 129 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHH---------------------------------HCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred hCcHHHHHHHHHHHHHhcCchh---------------------------------HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888877654441 0134677777777777888888888
Q ss_pred HHHHHhhCCCch
Q psy3701 273 HKQALVVAPMKA 284 (342)
Q Consensus 273 ~~~al~~~~~~~ 284 (342)
.+++.+..|+..
T Consensus 130 ~~R~~~~~~~~~ 141 (280)
T PF05843_consen 130 EKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHTTTS-
T ss_pred HHHHHHHhhhhh
Confidence 877777777643
No 211
>KOG2610|consensus
Probab=98.61 E-value=6.5e-06 Score=65.68 Aligned_cols=165 Identities=12% Similarity=0.027 Sum_probs=134.5
Q ss_pred hhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh-CCCC---hHHHHHHHHHHHHh
Q psy3701 118 YGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSI-AHED---PFVIHEMGVIAYQN 193 (342)
Q Consensus 118 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~ 193 (342)
-+.+....|++.+|-..+.+.++..|.+..++..--..+...|+...-...+++++.. +|+- ..+.-.++..+.+.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 4456677899999999999999999999999888888999999999999999999876 6665 45566788889999
Q ss_pred cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q psy3701 194 HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFH 273 (342)
Q Consensus 194 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 273 (342)
|-|++|.+..+++++++|.+ ..+....+.++...|++.++.++.
T Consensus 189 g~y~dAEk~A~ralqiN~~D------------------------------------~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFD------------------------------------CWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred ccchhHHHHHHhhccCCCcc------------------------------------hHHHHHHHHHHHhcchhhhHHHHH
Confidence 99999999999999999988 578888999999999999999998
Q ss_pred HHHHhhCCCc----hHHHHHHHHHHHHhCChHHHHHHHHHHH--hcccCch
Q psy3701 274 KQALVVAPMK----ASTFCCIGYIQALTGDLDSAVNYFHKTM--ALKRDDS 318 (342)
Q Consensus 274 ~~al~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~ 318 (342)
.+.-..-... ..-|..-+.++...+.++.|.+.|.+-+ ++..++.
T Consensus 233 ~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 233 YKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 7753221111 1234556778888899999999998654 3444454
No 212
>KOG2796|consensus
Probab=98.60 E-value=1.1e-05 Score=62.24 Aligned_cols=135 Identities=8% Similarity=-0.056 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhhcC-CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCC------CCchHHHH
Q psy3701 79 IAWYAVGCYYYLIGRSDPARRFLGKATSLD-KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK------GCHLPALY 151 (342)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~ 151 (342)
.+.+.+..++...|.|.-....+.+.++.+ |..+.....+|.+.++.|+.+.|..++++.-+... ....+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 456777888889999999999999999988 56777888999999999999999999996554321 23345556
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 152 VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
.+.++.-.+++.+|...+.+++..+|.++.+-++.|.|....|+..+|++.++.+++..|..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 78888889999999999999999999999999999999999999999999999999999876
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.58 E-value=0.00023 Score=58.30 Aligned_cols=203 Identities=11% Similarity=-0.045 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc-HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF-LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC 156 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 156 (342)
+-++..-+..-.-.|+++.|.+-|+..+. +|+. .-.+..|-.-....|..+.|+.+-+++....|.-+.++...-...
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 33444446666677777777777776654 2321 111222222334567777777777777777777776666666666
Q ss_pred hhhCCHHHHHHHHHHHHhh---CCCChH-----HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH
Q psy3701 157 GLTNNARLASKFFDLALSI---AHEDPF-----VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN 228 (342)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~---~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 228 (342)
+..|+++.|++..+..... .++... .+...+... -..+...|...-.++.++.|+..
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlv-------------- 263 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLV-------------- 263 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccc--------------
Confidence 7777777777777655432 222111 111111111 12345666666677777766652
Q ss_pred hhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH-------------------------------
Q psy3701 229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL------------------------------- 277 (342)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------------------------------- 277 (342)
..-..-+..+++.|+..++-..++.+.
T Consensus 264 ----------------------Paav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L 321 (531)
T COG3898 264 ----------------------PAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKL 321 (531)
T ss_pred ----------------------hHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 233333333344444443333333333
Q ss_pred -hhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 278 -VVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 278 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
++.|++.+.....+..-..-|++..|..--+.+....|...
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres 363 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES 363 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh
Confidence 34566666667777777777777777777777777777543
No 214
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.57 E-value=7.2e-06 Score=66.71 Aligned_cols=135 Identities=10% Similarity=0.015 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh-hccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701 79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAV-ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157 (342)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 157 (342)
-+|..+.....+.+..+.|...|.+|.+..+....+|...|.+... .++.+.|...|+.+++..|.+...|......+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3677777778888888889999999887666677888888888666 566666899999999888888888888888888
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 158 LTNNARLASKFFDLALSIAHEDP---FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 158 ~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
..|+.+.|..+|++++..-|... .+|......-...|+.+...++.+++.+..|..
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 88889999999998888766554 577777777888888888888888888877765
No 215
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.57 E-value=1.7e-07 Score=52.52 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701 285 STFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326 (342)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 326 (342)
.++..+|.+|...|++++|++.|+++++.+|+++.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345556666666666666666666666666666665555543
No 216
>KOG3617|consensus
Probab=98.56 E-value=1.6e-05 Score=70.85 Aligned_cols=171 Identities=8% Similarity=-0.056 Sum_probs=109.7
Q ss_pred hhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q psy3701 26 LQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKAT 105 (342)
Q Consensus 26 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 105 (342)
++.-....+|-.++.......+.+-|.-++-...........++.. .+|++ .-...+....++|-.++|...|.+.-
T Consensus 751 I~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~-q~~~e--~eakvAvLAieLgMlEeA~~lYr~ck 827 (1416)
T KOG3617|consen 751 IQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ-QNGEE--DEAKVAVLAIELGMLEEALILYRQCK 827 (1416)
T ss_pred HHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH-hCCcc--hhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333445677778888888888887777665543333333333332 34432 23345667778889999999998865
Q ss_pred hcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHH----------hh
Q psy3701 106 SLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLAL----------SI 175 (342)
Q Consensus 106 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------~~ 175 (342)
.. -.+-..|...|.+++|.+..+.--++. -...++..+..+...++.+.|+++|+++- .-
T Consensus 828 R~--------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e 897 (1416)
T KOG3617|consen 828 RY--------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE 897 (1416)
T ss_pred HH--------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh
Confidence 43 345567778888888887655432222 12456777888888888888888888652 12
Q ss_pred CC----------CChHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701 176 AH----------EDPFVIHEMGVIAYQNHNYTVAENCFMEALSK 209 (342)
Q Consensus 176 ~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 209 (342)
+| .++..|...|..+...|+.+.|+.+|..+-..
T Consensus 898 ~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~ 941 (1416)
T KOG3617|consen 898 YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY 941 (1416)
T ss_pred ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh
Confidence 22 24455666777777788888888888776443
No 217
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.52 E-value=2.1e-07 Score=52.10 Aligned_cols=42 Identities=33% Similarity=0.517 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhh
Q psy3701 79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGH 120 (342)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 120 (342)
.++..+|..|...|++++|++.|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567777888888888888888888888888888887777764
No 218
>KOG1914|consensus
Probab=98.50 E-value=0.00021 Score=60.93 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q psy3701 60 LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKAT 105 (342)
Q Consensus 60 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 105 (342)
.++....+++++...|..+.+|.......+..++|+.-...|.+++
T Consensus 35 ~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL 80 (656)
T KOG1914|consen 35 IDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCL 80 (656)
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4566666666666667666666666666666666766666666654
No 219
>KOG2053|consensus
Probab=98.50 E-value=4.3e-05 Score=68.65 Aligned_cols=125 Identities=11% Similarity=0.006 Sum_probs=108.8
Q ss_pred HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHH
Q psy3701 89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKF 168 (342)
Q Consensus 89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 168 (342)
...+++.+|.....+.++..|+...+...-|.++.++|+.++|..+++..-...+++...+-.+-.+|..+|+.++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 35678999999999999999999999999999999999999999888887777788888888899999999999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701 169 FDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214 (342)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 214 (342)
|+++...+|+ ......+-.+|.+.+.|.+-.+.--+..+..|..+
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 9999999998 77788888888888888776666666666777774
No 220
>KOG4642|consensus
Probab=98.50 E-value=2.9e-07 Score=69.55 Aligned_cols=95 Identities=13% Similarity=0.037 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC
Q psy3701 81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN 160 (342)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 160 (342)
+..-|..++...+|+.|+.+|.+++.++|..+..|.+.+.++++..+++.+....++++++.|+...+.+.+|.......
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 34456777778888999999999999999988888899999999999999999999999999998888889999999999
Q ss_pred CHHHHHHHHHHHHhh
Q psy3701 161 NARLASKFFDLALSI 175 (342)
Q Consensus 161 ~~~~A~~~~~~~~~~ 175 (342)
.+++|+..+.++..+
T Consensus 93 ~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSL 107 (284)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999888654
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.50 E-value=0.00018 Score=59.89 Aligned_cols=118 Identities=8% Similarity=-0.031 Sum_probs=69.6
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhc----CCCcHHHHHHhhhHHHh---hccHHHHHHHHHH-HhccCCCCchH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSL----DKLFLPAWLMYGHSFAV---ENEHDQAMAAYFN-AFNLFKGCHLP 148 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~~~~~~~ 148 (342)
++++...+-..|....+|+.-++..+..-.+ -++.+.+...+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3455556666677777777777777665554 33445556666666666 6777777777777 33444455666
Q ss_pred HHHHHHHHhhh---------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC
Q psy3701 149 ALYVGLECGLT---------NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN 195 (342)
Q Consensus 149 ~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (342)
+...|.+|... ...++|+..|.++.+.+|+ ...-.+++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence 66666665432 2355666666666666643 2233344444444443
No 222
>KOG4642|consensus
Probab=98.50 E-value=2.6e-06 Score=64.49 Aligned_cols=98 Identities=14% Similarity=0.011 Sum_probs=90.4
Q ss_pred HhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcCh
Q psy3701 117 MYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY 196 (342)
Q Consensus 117 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (342)
.-|..+....+|+.|+..|.+++.++|..+..+.+.+.++++.++++.+....++++++.|+....++.+|.+......|
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34666777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhcC
Q psy3701 197 TVAENCFMEALSKVKQLG 214 (342)
Q Consensus 197 ~~A~~~~~~al~~~~~~~ 214 (342)
++|+..++++..+....+
T Consensus 95 ~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQP 112 (284)
T ss_pred cHHHHHHHHHHHHHhcCC
Confidence 999999999987765553
No 223
>KOG1586|consensus
Probab=98.50 E-value=0.00011 Score=55.81 Aligned_cols=176 Identities=14% Similarity=0.118 Sum_probs=122.6
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS-AIAWYAVGCYYYLIGRSDPARRFLGKATSLDK 109 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 109 (342)
.+.++..-|+.|....++..|-..|-++- .+..+ ..+.++ +..+...+.+ ++.++.++|+.++++++++..
T Consensus 33 Aadl~~~Aan~yklaK~w~~AG~aflkaA-----~~h~k--~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt 104 (288)
T KOG1586|consen 33 AAELYERAANMYKLAKNWSAAGDAFLKAA-----DLHLK--AGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYT 104 (288)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHh--cCCchhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHH
Confidence 34455556677777777777777776642 11111 112233 3444444555 455699999999999999876
Q ss_pred CcHH------HHHHhhhHHHhh-ccHHHHHHHHHHHhccCCCCc------hHHHHHHHHHhhhCCHHHHHHHHHHHHhhC
Q psy3701 110 LFLP------AWLMYGHSFAVE-NEHDQAMAAYFNAFNLFKGCH------LPALYVGLECGLTNNARLASKFFDLALSIA 176 (342)
Q Consensus 110 ~~~~------~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 176 (342)
+... .+..+|.+|... .++++|+.+|+++-+...... ..+...+..-...++|.+|+..|++.....
T Consensus 105 ~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 105 DMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred hhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6543 355788888766 899999999999987754421 234456677778899999999999988776
Q ss_pred CCChH-------HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701 177 HEDPF-------VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214 (342)
Q Consensus 177 ~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 214 (342)
-+++- .++.-|.|++-..+.-.+...+++..+++|...
T Consensus 185 ~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 185 LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 66543 245567777777888888888888888888763
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.43 E-value=8.2e-05 Score=61.79 Aligned_cols=176 Identities=13% Similarity=-0.037 Sum_probs=124.8
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHHhcc----CCCCchHHHHHHHHHhh---hCCHHHHHHHHHH-HHhhCCCChHHH
Q psy3701 112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNL----FKGCHLPALYVGLECGL---TNNARLASKFFDL-ALSIAHEDPFVI 183 (342)
Q Consensus 112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-~~~~~~~~~~~~ 183 (342)
++....+-.+|....+|+.-++..+..-.+ -+..+.....+|.++.+ .|+.++|++.+.. .....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 556677777899999999999999888776 45566777788999888 8999999999999 555667789999
Q ss_pred HHHHHHHHHh---------cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHH
Q psy3701 184 HEMGVIAYQN---------HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN 254 (342)
Q Consensus 184 ~~l~~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (342)
..+|.+|-.. ...++|+..|.++.+.+|+. ..-.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-------------------------------------Y~GI 263 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-------------------------------------YSGI 263 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-------------------------------------cchH
Confidence 9999998542 24688999999999998655 2333
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH--------h----hCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHh
Q psy3701 255 NLGHVNRKLKKYEEALEFHKQAL--------V----VAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATT 322 (342)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~al--------~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 322 (342)
|++.++...|...+...-.++.. + ..-.+......++.+..-.|++++|++.+++++.+.|..-....
T Consensus 264 N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~S 343 (374)
T PF13281_consen 264 NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELES 343 (374)
T ss_pred HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHH
Confidence 44444444443222221111111 1 11233445566778888899999999999999999876654443
Q ss_pred HH
Q psy3701 323 ML 324 (342)
Q Consensus 323 ~l 324 (342)
.+
T Consensus 344 t~ 345 (374)
T PF13281_consen 344 TL 345 (374)
T ss_pred HH
Confidence 33
No 225
>KOG0545|consensus
Probab=98.42 E-value=1.6e-05 Score=60.68 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC--ccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG--GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG 257 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 257 (342)
..++..-|.-++..|+|.+|...|+.|+..-.+-. +......|..+ ......++.+++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eL--------------------dk~~tpLllNy~ 237 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLEL--------------------DKMITPLLLNYC 237 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHH--------------------HHhhhHHHHhHH
Confidence 34567788888999999999999988876432221 00000111110 111245888999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHH
Q psy3701 258 HVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFAT 321 (342)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 321 (342)
.|+...|+|-++++.....+...|.+..+++..|.+....=+.++|...|.++++++|.-..+.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999765443
No 226
>KOG0530|consensus
Probab=98.42 E-value=0.00016 Score=55.93 Aligned_cols=241 Identities=8% Similarity=-0.009 Sum_probs=150.7
Q ss_pred ccHHHHHHHHHHHHH-----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-ChHHHHHHHHHHhhcCCCcHHHHHHhh
Q psy3701 46 ENRALAADCYKGALL-----ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYG 119 (342)
Q Consensus 46 ~~~~~A~~~~~~~~~-----~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la 119 (342)
.+|.+++.+|+..+. ..|+.+.+.++..+|.+..+|...-.+...++ +..+-++++...++-+|++-.+|...-
T Consensus 40 e~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr 119 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRR 119 (318)
T ss_pred hhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 456666666666542 56667777777888888888777766666554 567777788888888888888887777
Q ss_pred hHHHhhccHH-HHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-c---
Q psy3701 120 HSFAVENEHD-QAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN-H--- 194 (342)
Q Consensus 120 ~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~--- 194 (342)
.+....|++. .-++..+.++..+..+..+|...-.+...-+.++.-+.+..+.++.+-.+..+|+..-.+.... |
T Consensus 120 ~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~ 199 (318)
T KOG0530|consen 120 VIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVIS 199 (318)
T ss_pred HHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCcc
Confidence 7777777776 6777778888877777778887777777777788888888888877766666665432222221 1
Q ss_pred --ChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH-hh--hHHHH
Q psy3701 195 --NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK-LK--KYEEA 269 (342)
Q Consensus 195 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g--~~~~A 269 (342)
..+.-+.+..+.+...|.+ ..+|..|.-++.. .| .+.+-
T Consensus 200 ~~~le~El~yt~~~I~~vP~N------------------------------------eSaWnYL~G~l~~d~gl~s~s~v 243 (318)
T KOG0530|consen 200 KAELERELNYTKDKILLVPNN------------------------------------ESAWNYLKGLLELDSGLSSDSKV 243 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCC------------------------------------ccHHHHHHHHHHhccCCcCCchH
Confidence 1233455666667777776 4677777766664 33 23334
Q ss_pred HHHHHHHH-hhCCCchHHHHHHHHHHH------HhCChH---HHHHHHHHHH-hcccCchhHHh
Q psy3701 270 LEFHKQAL-VVAPMKASTFCCIGYIQA------LTGDLD---SAVNYFHKTM-ALKRDDSFATT 322 (342)
Q Consensus 270 ~~~~~~al-~~~~~~~~~~~~l~~~~~------~~g~~~---~A~~~~~~al-~~~p~~~~~~~ 322 (342)
.......+ +.....+..+-.+...|. +.+.-+ +|...|+..- +.+|-...-|.
T Consensus 244 v~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~ 307 (318)
T KOG0530|consen 244 VSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWR 307 (318)
T ss_pred HHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 44444443 333344555555555552 122222 4555555543 56664444443
No 227
>KOG1585|consensus
Probab=98.41 E-value=4.2e-05 Score=58.43 Aligned_cols=170 Identities=12% Similarity=0.067 Sum_probs=119.8
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch------HHHHHHHHHhhhCCHHHHHHHHHHHHhhC-----CCChHH
Q psy3701 114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL------PALYVGLECGLTNNARLASKFFDLALSIA-----HEDPFV 182 (342)
Q Consensus 114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~ 182 (342)
.+..-+.+|....++++|..++.++.+-...+.. ++-..+.....+..+.++..+++++.... |+....
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 3445567888889999999999999865544332 23335666777789999999999998753 333333
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
-...+--..+.-++++|+.+|++++.+-.... ......+.+...++++.+
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~d------------------------------r~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEEDD------------------------------RDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc------------------------------hHHHHHHHHHHhhhHhhh
Confidence 44445555677789999999999988765552 111113577778899999
Q ss_pred hhhHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 263 LKKYEEALEFHKQALVV------APMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
..++.+|-..+.+-... .++....+.....++....++..|..+++...++
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 99999998888775432 2333345556666677778999999999987665
No 228
>KOG0985|consensus
Probab=98.40 E-value=0.00071 Score=62.18 Aligned_cols=200 Identities=13% Similarity=0.062 Sum_probs=115.0
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC 156 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 156 (342)
.+.+|..+|.+..+.|...+|++.|-++ +++..+.....+..+.|.|++-+.++..+.+.... +..-..+...|
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAY 1176 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHH
Confidence 4556666666666666666666666553 34455555555556666666666655555443322 22222334444
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHH
Q psy3701 157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK 236 (342)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
.+.++..+-.+.. ..|+... ....|.-++..|.|+.|.-+|..
T Consensus 1177 Akt~rl~elE~fi-----~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~------------------------------- 1219 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-----AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN------------------------------- 1219 (1666)
T ss_pred HHhchHHHHHHHh-----cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH-------------------------------
Confidence 4455444433322 1232222 23445555555555554444432
Q ss_pred HHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC-------------------------CchHHHHHHH
Q psy3701 237 VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP-------------------------MKASTFCCIG 291 (342)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------~~~~~~~~l~ 291 (342)
..-|..++..+..+|+|+.|...-+++-.... -+++-+-.+.
T Consensus 1220 -------------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli 1286 (1666)
T KOG0985|consen 1220 -------------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELI 1286 (1666)
T ss_pred -------------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHH
Confidence 23556677777777777777777666532110 0123344566
Q ss_pred HHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 292 YIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 292 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
..|...|-+++-+..++.++.+..-+-..+..|+.++.++.
T Consensus 1287 ~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1287 EYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred HHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 77888899999999999999998888888888888877653
No 229
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.39 E-value=4.5e-05 Score=64.40 Aligned_cols=168 Identities=15% Similarity=0.128 Sum_probs=122.6
Q ss_pred HhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC------------------
Q psy3701 117 MYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHE------------------ 178 (342)
Q Consensus 117 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------ 178 (342)
.+..-..+..+...-++.-++|++++|+.+.++..++.-. .....+|+++++++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 4445556788889999999999999999999988876532 23456677777776653210
Q ss_pred ---C----hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChH
Q psy3701 179 ---D----PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP 251 (342)
Q Consensus 179 ---~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (342)
+ ..+...+|.+..+.|+.++|++.++..++..|... ...
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~----------------------------------~l~ 296 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD----------------------------------NLN 296 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc----------------------------------hhh
Confidence 1 23456789999999999999999999999887631 146
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHH-hCC---------------hHHHHHHHHHHHhcc
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALVV-APMKASTFCCIGYIQAL-TGD---------------LDSAVNYFHKTMALK 314 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~-~g~---------------~~~A~~~~~~al~~~ 314 (342)
+..++..++..++.|.++...+.+--.. -|+.+...+..+.+-.+ .++ -..|.+...+|++.+
T Consensus 297 IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefN 376 (539)
T PF04184_consen 297 IRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN 376 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhC
Confidence 8899999999999999999999886433 25556655555554332 121 234778899999999
Q ss_pred cCchhH
Q psy3701 315 RDDSFA 320 (342)
Q Consensus 315 p~~~~~ 320 (342)
|.-+.-
T Consensus 377 PHVp~Y 382 (539)
T PF04184_consen 377 PHVPKY 382 (539)
T ss_pred CCCchh
Confidence 977743
No 230
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.35 E-value=5.3e-07 Score=46.97 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=31.3
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHH
Q psy3701 272 FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVN 305 (342)
Q Consensus 272 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 305 (342)
+|+++++++|+++.+|+++|.++...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 231
>KOG3616|consensus
Probab=98.32 E-value=0.0002 Score=63.45 Aligned_cols=157 Identities=16% Similarity=0.096 Sum_probs=100.2
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHhCChHHHHHHHHHHhhcC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGAL-LADLFKLAHELVDLYPDSAIAW-YAVGCYYYLIGRSDPARRFLGKATSLD 108 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~~~~~~A~~~~~~a~~~~ 108 (342)
+.+++-.-|..+.+..++++|+++|+++. +.+|+.+.+-+ .|.....+ -..|.-+...|+++.|+..|-.+-.
T Consensus 660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfa---fp~evv~lee~wg~hl~~~~q~daainhfiea~~-- 734 (1636)
T KOG3616|consen 660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA---FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-- 734 (1636)
T ss_pred hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh---CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--
Confidence 34555557888888899999999999985 34555555433 34433222 3457778888999999988866422
Q ss_pred CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy3701 109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGV 188 (342)
Q Consensus 109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 188 (342)
...-........++.+|+..+...-..... ...+-.++.-|...|+++-|.+.|.++-. ...-..
T Consensus 735 ------~~kaieaai~akew~kai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~ 799 (1636)
T KOG3616|consen 735 ------LIKAIEAAIGAKEWKKAISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEADL--------FKDAID 799 (1636)
T ss_pred ------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHH
Confidence 122223344556777777776655433221 22344577778888888888888876522 223345
Q ss_pred HHHHhcChhHHHHHHHHHH
Q psy3701 189 IAYQNHNYTVAENCFMEAL 207 (342)
Q Consensus 189 ~~~~~~~~~~A~~~~~~al 207 (342)
+|.+.|+|++|.+.-+++.
T Consensus 800 my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HHhccccHHHHHHHHHHhc
Confidence 6677888888877766654
No 232
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.31 E-value=4.6e-07 Score=47.19 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=16.8
Q ss_pred HHHHhhcCCCcHHHHHHhhhHHHhhccHHHHH
Q psy3701 101 LGKATSLDKLFLPAWLMYGHSFAVENEHDQAM 132 (342)
Q Consensus 101 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 132 (342)
|+++++++|+++.+|+.+|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555543
No 233
>KOG2300|consensus
Probab=98.30 E-value=0.00073 Score=57.01 Aligned_cols=258 Identities=15% Similarity=0.091 Sum_probs=165.8
Q ss_pred hhhhcccchhhhhhhhhhhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--------HHH
Q psy3701 9 QELLGGEGVSFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS--------AIA 80 (342)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~--------~~~ 80 (342)
..++|.-....+.|+.+. .+.+-++...-.--+..|-+++|.++-++++ ...+++ +..|.. ...
T Consensus 254 e~ilgsps~~l~~wlpke--qicaLV~l~tv~hsm~~gy~~~~~K~tDe~i-----~q~ekl-kq~d~~srilsm~km~~ 325 (629)
T KOG2300|consen 254 EKILGSPSPILFEWLPKE--QICALVYLVTVIHSMPAGYFKKAQKYTDEAI-----KQTEKL-KQADLMSRILSMFKMIL 325 (629)
T ss_pred ccccCCCChHHHhhccHh--hhHhhhhhhHHhhhhhhHHHHHHHHHHHHHH-----HHHhhc-ccccchhHHHHHHHHHH
Confidence 445666666666665532 2333343333333345566777776555443 333332 222212 223
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhc---CCC-------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC---ch
Q psy3701 81 WYAVGCYYYLIGRSDPARRFLGKATSL---DKL-------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC---HL 147 (342)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~ 147 (342)
+-.+..|-.-.|++.+|++....+.+. .|. .+..++.+|.-....|.++.|...|..+.+..... ..
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~ 405 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF 405 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Confidence 445667777889999999988877664 343 24467788888888999999999999999876542 23
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC----------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccc
Q psy3701 148 PALYVGLECGLTNNARLASKFFDLALSIAHED----------PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI 217 (342)
Q Consensus 148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 217 (342)
...++|.+|.+.|+-+.-.+.++.. .|.+ ..+++..|...+.++++.+|...+.+.++.....+
T Consensus 406 ~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed--- 479 (629)
T KOG2300|consen 406 CNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED--- 479 (629)
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh---
Confidence 4456899999988776655555543 4432 23567788888999999999999999998762221
Q ss_pred cccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC---CCchHH---HHHHH
Q psy3701 218 IADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA---PMKAST---FCCIG 291 (342)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~~~---~~~l~ 291 (342)
...-.+..+..+|.+....|+..++.+..+-+++.. |+.+.. ..-+-
T Consensus 480 ---------------------------~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~ 532 (629)
T KOG2300|consen 480 ---------------------------LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILT 532 (629)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHH
Confidence 011113466778999999999999999988888765 444432 23345
Q ss_pred HHHHHhCC--hHHHHHHH
Q psy3701 292 YIQALTGD--LDSAVNYF 307 (342)
Q Consensus 292 ~~~~~~g~--~~~A~~~~ 307 (342)
.++...|+ .+...+.|
T Consensus 533 ~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 533 DLYQALGEKGNEMENEAF 550 (629)
T ss_pred HHHHHhCcchhhHHHHHH
Confidence 66677777 44444444
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.29 E-value=0.0019 Score=56.65 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=121.1
Q ss_pred hHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH--------HH--h--hhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701 120 HSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL--------EC--G--LTNNARLASKFFDLALSIAHEDPFVIHEMG 187 (342)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~--------~~--~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 187 (342)
.+.--.|+-+.+++.+.++.+. ++-......+.. .+ . .....+.|.+.+.......|+..-..+..|
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~g 274 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEG 274 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3334568999999999998773 321111111111 11 1 345788899999999999999999999999
Q ss_pred HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 267 (342)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (342)
+++...|+.++|++.|++++.....-+ ......++.+|.++..+++|+
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~--------------------------------Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWK--------------------------------QLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHH--------------------------------hHHHHHHHHHHHHHHHHchHH
Confidence 999999999999999999885332221 111357889999999999999
Q ss_pred HHHHHHHHHHhhCCCc-hHHHHHHHHHHHHhCCh-------HHHHHHHHHHHhcc
Q psy3701 268 EALEFHKQALVVAPMK-ASTFCCIGYIQALTGDL-------DSAVNYFHKTMALK 314 (342)
Q Consensus 268 ~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~ 314 (342)
+|..++.+..+.+.-. ....+..|.++...|+. ++|.+.|.++-.+.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999865533 34456788899999999 88999998886543
No 235
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.28 E-value=1.8e-06 Score=45.27 Aligned_cols=31 Identities=23% Similarity=0.554 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701 286 TFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316 (342)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 316 (342)
+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
No 236
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.25 E-value=2.8e-06 Score=44.54 Aligned_cols=33 Identities=21% Similarity=0.520 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc
Q psy3701 285 STFCCIGYIQALTGDLDSAVNYFHKTMALKRDD 317 (342)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 317 (342)
.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345566666666666666666666666666653
No 237
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.24 E-value=0.0014 Score=55.65 Aligned_cols=128 Identities=14% Similarity=0.115 Sum_probs=95.8
Q ss_pred CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHH
Q psy3701 177 HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNL 256 (342)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 256 (342)
......|...+.+..+.|+++.|...+.++....+... ...+.+....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~--------------------------------~~~~~v~~e~ 190 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE--------------------------------SLLPRVFLEY 190 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc--------------------------------CCCcchHHHH
Confidence 34566788899999999999999999998887664431 0124566777
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhC-C-C--------------------------------chHHHHHHHHHHHHh-----
Q psy3701 257 GHVNRKLKKYEEALEFHKQALVVA-P-M--------------------------------KASTFCCIGYIQALT----- 297 (342)
Q Consensus 257 ~~~~~~~g~~~~A~~~~~~al~~~-~-~--------------------------------~~~~~~~l~~~~~~~----- 297 (342)
+..+...|+..+|+..++..+... . . ...++..+|......
T Consensus 191 akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~ 270 (352)
T PF02259_consen 191 AKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLS 270 (352)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccc
Confidence 888888888888888888777611 0 0 123456666666666
Q ss_pred -CChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcCC
Q psy3701 298 -GDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESP 336 (342)
Q Consensus 298 -g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 336 (342)
+..+++...|+++++++|+...++..++.......+..+
T Consensus 271 ~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~ 310 (352)
T PF02259_consen 271 SESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDP 310 (352)
T ss_pred cccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhh
Confidence 888899999999999999999999999988887766554
No 238
>KOG0551|consensus
Probab=98.24 E-value=0.00016 Score=57.90 Aligned_cols=106 Identities=14% Similarity=0.090 Sum_probs=86.2
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcC
Q psy3701 30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD-SAIAWYAVGCYYYLIGRSDPARRFLGKATSLD 108 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 108 (342)
..+.-+-.-|+-|++..+|..|+.+|.+++-.+ ..+|+ ++..|.+.+.+.+..|+|..|+....+++..+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k---------c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~ 149 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK---------CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK 149 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc---------CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345555568999999999999999999985111 12333 46778889999999999999999999999999
Q ss_pred CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC
Q psy3701 109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG 144 (342)
Q Consensus 109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 144 (342)
|.+..+++.-+.++....++++|...++..+.++..
T Consensus 150 P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 150 PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999999999999999999888776654
No 239
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.23 E-value=0.0013 Score=55.92 Aligned_cols=173 Identities=14% Similarity=0.027 Sum_probs=113.9
Q ss_pred CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCC----CChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccc
Q psy3701 142 FKGCHLPALYVGLECGLTNNARLASKFFDLALSIAH----EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI 217 (342)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 217 (342)
.......+...+.+..+.|+++.|...+.++....+ ..+.+....+.++...|+..+|+..++..+.........
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~- 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID- 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc-
Confidence 334456778889999999999999999999887652 256788889999999999999999999888733222100
Q ss_pred cccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh------hhHHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3701 218 IADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL------KKYEEALEFHKQALVVAPMKASTFCCIG 291 (342)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~l~ 291 (342)
...............................+.++..+|...... +..++++..|.++++.+|....+|+..|
T Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 221 -SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred -cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 000000000000000000000000001111246777788877777 8899999999999999999999999998
Q ss_pred HHHHHhCC-----------------hHHHHHHHHHHHhcccC
Q psy3701 292 YIQALTGD-----------------LDSAVNYFHKTMALKRD 316 (342)
Q Consensus 292 ~~~~~~g~-----------------~~~A~~~~~~al~~~p~ 316 (342)
..+...-+ ...|+..|-+++...|+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 300 LFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 88764311 13488888888888877
No 240
>KOG0376|consensus
Probab=98.23 E-value=3e-06 Score=70.87 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHH
Q psy3701 53 DCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAM 132 (342)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 132 (342)
+.|....++.|+.+|.++++.+|+++..+-+.+..+.+.+++..|+..+.++++.+|....+|+..|.+....+++.+|+
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 33333344444555555555555554444444555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhccCCCCchHH
Q psy3701 133 AAYFNAFNLFKGCHLPA 149 (342)
Q Consensus 133 ~~~~~al~~~~~~~~~~ 149 (342)
..|++.....|+.+.+.
T Consensus 93 ~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHhhhcCcCcHHHH
Confidence 55555555555444433
No 241
>KOG0376|consensus
Probab=98.22 E-value=2.2e-06 Score=71.66 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=99.3
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhh
Q psy3701 185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK 264 (342)
Q Consensus 185 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (342)
..+.-.+.-+.++.|+..|.++++++|+. +..+.+.+.++.+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnc------------------------------------a~~~anRa~a~lK~e 52 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNC------------------------------------AIYFANRALAHLKVE 52 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcc------------------------------------eeeechhhhhheeec
Confidence 44566677889999999999999999998 467788889999999
Q ss_pred hHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701 265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE 329 (342)
Q Consensus 265 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 329 (342)
++..|+.-+.++++.+|....+++..|.+....+++.+|...|+....+.|+++.+...+..|-.
T Consensus 53 ~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 53 SFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred hhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888876643
No 242
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.20 E-value=4.2e-06 Score=43.83 Aligned_cols=33 Identities=39% Similarity=0.558 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Q psy3701 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 283 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 283 (342)
.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 589999999999999999999999999999974
No 243
>KOG0551|consensus
Probab=98.19 E-value=2.7e-05 Score=62.09 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHH
Q psy3701 181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN 260 (342)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (342)
.-+-.-|.-|++.++|..|+..|.+.++..-.++ ...+..|.+.+-+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~--------------------------------dlnavLY~NRAAa~ 129 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADP--------------------------------DLNAVLYTNRAAAQ 129 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc--------------------------------cHHHHHHhhHHHHH
Confidence 3455678888888899999999999888765542 22356888888888
Q ss_pred HHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhH
Q psy3701 261 RKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320 (342)
Q Consensus 261 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 320 (342)
...|+|..|+.-+.+++..+|.+..+++.-+.|+..+.++++|..+++..++++.+...+
T Consensus 130 ~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 130 LYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 899999999999999999999999999988999999999888888888877765544443
No 244
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.18 E-value=4.2e-06 Score=43.86 Aligned_cols=34 Identities=38% Similarity=0.617 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF 111 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 111 (342)
+.+|+.+|.+++..|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3566777777777777777777777777777653
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.16 E-value=0.00013 Score=63.87 Aligned_cols=154 Identities=17% Similarity=0.140 Sum_probs=117.9
Q ss_pred hCChHHHHHHHHHHhhcCCCc-HHH------HHHhhhHHH----hhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh
Q psy3701 91 IGRSDPARRFLGKATSLDKLF-LPA------WLMYGHSFA----VENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT 159 (342)
Q Consensus 91 ~~~~~~A~~~~~~a~~~~~~~-~~~------~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 159 (342)
.||-+.+++.+.++.+...-. +-+ |+.....+. .....+.|.+.+....+..|+.....+..|+++...
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK 280 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 478899999999987732211 111 111111111 345678899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701 160 NNARLASKFFDLALSIAHE----DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED 235 (342)
Q Consensus 160 ~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (342)
|+.++|++.+++++..... ..-.++.+|.++..+++|++|..++.+..+.+.-+.
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk--------------------- 339 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSK--------------------- 339 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHH---------------------
Confidence 9999999999998853322 234578899999999999999999999998765553
Q ss_pred HHHHhchhccCCCChHHHHHHHHHHHHhhhH-------HHHHHHHHHHHhh
Q psy3701 236 KVKQLGGEIIADKWEPLLNNLGHVNRKLKKY-------EEALEFHKQALVV 279 (342)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~ 279 (342)
+...+..|.++...|+. ++|.+.+.++-..
T Consensus 340 --------------a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 340 --------------AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred --------------HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 45667788889999988 8888888887654
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00062 Score=53.93 Aligned_cols=135 Identities=9% Similarity=-0.108 Sum_probs=99.7
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH--H
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG--L 154 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~--~ 154 (342)
..+.-+..+.-....|++.+|...|..+++..|++.++...++.++...|+.+.|...+...-....... .....+ .
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~ 211 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIE 211 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHH
Confidence 4455566677788899999999999999999999999999999999999999999888765433322211 111111 2
Q ss_pred HHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
.+.+.....+. ..+++.+..+|++...-+.++..+...|+.++|.+.+-..++.+...
T Consensus 212 ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 212 LLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 22233333322 23455567799999999999999999999999999998888876554
No 247
>KOG0545|consensus
Probab=98.13 E-value=3.4e-05 Score=58.88 Aligned_cols=103 Identities=13% Similarity=0.012 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhc--------CCCcH----------HHHHHhhhHHHhhccHHHHHHHHHHHh
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSL--------DKLFL----------PAWLMYGHSFAVENEHDQAMAAYFNAF 139 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al 139 (342)
..++...|+-++..|+|.+|...|..|+.. .|..+ ..+.++..|+...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 456778899999999999999999888642 33332 346677778888888888888888888
Q ss_pred ccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh
Q psy3701 140 NLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180 (342)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 180 (342)
...|++..+++..|.++...=+.++|..-|.++++++|.-.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 88888888888888887777788888888888888777543
No 248
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.04 E-value=0.0057 Score=51.50 Aligned_cols=140 Identities=12% Similarity=0.055 Sum_probs=86.0
Q ss_pred HHHHHHhcC-hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHH------------HHhchhccCC---CCh
Q psy3701 187 GVIAYQNHN-YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKV------------KQLGGEIIAD---KWE 250 (342)
Q Consensus 187 ~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~---~~~ 250 (342)
|.-+.+.|. -++|+..++.+++..+.+. .....+..-....+..++ ........++ ...
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~-----ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ 460 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDI-----ECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEE 460 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccH-----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHH
Confidence 444455565 6788899988888877662 111111111111111111 1111122222 223
Q ss_pred HHHHHHH--HHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC----chhHHhHH
Q psy3701 251 PLLNNLG--HVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD----DSFATTML 324 (342)
Q Consensus 251 ~~~~~l~--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l 324 (342)
+.-+.++ ..+...|+|.++.-+-.=..++.| ++.++..+|.+.....+|++|..++... .|+ +..+...+
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl 536 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKAL 536 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHH
Confidence 3334443 446788999999999888889999 8999999999999999999999998754 333 23455566
Q ss_pred HHHHHHhhhcC
Q psy3701 325 SYVIEQLIEES 335 (342)
Q Consensus 325 ~~~~~~~~~~~ 335 (342)
..|.+...++.
T Consensus 537 ~lCqKh~~kd~ 547 (549)
T PF07079_consen 537 ALCQKHLPKDL 547 (549)
T ss_pred HHHHHhhhhhh
Confidence 66666665543
No 249
>KOG4507|consensus
Probab=98.03 E-value=0.00024 Score=61.26 Aligned_cols=103 Identities=23% Similarity=0.166 Sum_probs=62.4
Q ss_pred HHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHh-chhccCCCChHHHHHHHHHHHHhhhHHH
Q psy3701 190 AYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL-GGEIIADKWEPLLNNLGHVNRKLKKYEE 268 (342)
Q Consensus 190 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 268 (342)
....|+...|++++..++...|... .++......++...+-.. ++...+ .........+..++.+|+++..+.+.+.
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~-~v~~v~la~~~~~~~~~~-da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQ-DVPLVNLANLLIHYGLHL-DATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhh-cccHHHHHHHHHHhhhhc-cHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 3446777777777777777666542 112222222222222111 111111 1112223335788899999999999999
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHH
Q psy3701 269 ALEFHKQALVVAPMKASTFCCIGYIQ 294 (342)
Q Consensus 269 A~~~~~~al~~~~~~~~~~~~l~~~~ 294 (342)
|++.|+.++..+|+++.+...+-.+-
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 99999999999999987765554443
No 250
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.03 E-value=0.00073 Score=49.28 Aligned_cols=111 Identities=18% Similarity=0.176 Sum_probs=76.4
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhcC-ccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701 187 GVIAYQNHNYTVAENCFMEALSKVKQLG-GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK 265 (342)
Q Consensus 187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (342)
|......++.+.++..+++++.+..... .......|...... ..... ...+...++..+...|+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~--~l~~~-------------~~~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERE--RLREL-------------YLDALERLAEALLEAGD 77 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHH--HHHHH-------------HHHHHHHHHHHHHHTT-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHH--HHHHH-------------HHHHHHHHHHHHHhccC
Confidence 4445566788888888888888765543 11111223221110 00000 13577778888999999
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701 266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312 (342)
Q Consensus 266 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 312 (342)
+++|+..+++++..+|.+..++..+..++...|+..+|+..|++..+
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988754
No 251
>KOG1914|consensus
Probab=97.96 E-value=0.0078 Score=51.84 Aligned_cols=215 Identities=13% Similarity=0.040 Sum_probs=148.7
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhCC--------------hHHHHHHHHHHhhcC-CCcHHHHHHhhhHHHhhc---
Q psy3701 65 KLAHELVDLYPDSAIAWYAVGCYYYLIGR--------------SDPARRFLGKATSLD-KLFLPAWLMYGHSFAVEN--- 126 (342)
Q Consensus 65 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g--- 126 (342)
-.+++++..-+..+++|+..+..+...++ .+++..+|++++... ..+...++.++..-...-
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc
Confidence 44455556666778888877766666665 678888888887643 233444555554332222
Q ss_pred cHHHHHHHHHHHhccCCCCc-hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHHhcChhHHHHHHH
Q psy3701 127 EHDQAMAAYFNAFNLFKGCH-LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI-AYQNHNYTVAENCFM 204 (342)
Q Consensus 127 ~~~~A~~~~~~al~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~ 204 (342)
.++.....+.+++.....++ .++..+-..-.+..-...|..+|.++-+..-....++..-|.+ |...++.+-|...|+
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe 425 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE 425 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence 36677778888877654433 3444555556666778888889988876544444555555544 456789999999999
Q ss_pred HHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Q psy3701 205 EALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV--APM 282 (342)
Q Consensus 205 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~ 282 (342)
-.++..++.+ ..-......+...++-..|...|++++.. .++
T Consensus 426 LGLkkf~d~p------------------------------------~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 426 LGLKKFGDSP------------------------------------EYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHHhcCCCh------------------------------------HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 9999998884 55556667778889999999999999987 332
Q ss_pred -chHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701 283 -KASTFCCIGYIQALTGDLDSAVNYFHKTMALKR 315 (342)
Q Consensus 283 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 315 (342)
...+|..+-..-..-|+....++.=++-....|
T Consensus 470 ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 470 KSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 346787777777788888888887777666666
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0027 Score=50.50 Aligned_cols=155 Identities=12% Similarity=-0.036 Sum_probs=109.4
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHH
Q psy3701 37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWL 116 (342)
Q Consensus 37 ~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 116 (342)
..+.-....|++.+|...|..+ +...|++.++...++.++...|+.+.|...+...-....... ...
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~a------------l~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~ 205 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQA------------LQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHG 205 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHH------------HHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHH
Confidence 4455566667777777777775 688999999999999999999999999988877543332221 111
Q ss_pred Hhh--hHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHH
Q psy3701 117 MYG--HSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAH--EDPFVIHEMGVIAYQ 192 (342)
Q Consensus 117 ~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 192 (342)
..+ ..+.+.....+. ..+++.+..+|++..+.+.++..+...|+.++|.+.+-..++.+. .+..+...+-.++..
T Consensus 206 l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 206 LQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 111 222222222222 345566778999999999999999999999999999999988754 355667777777777
Q ss_pred hcChhHHHHHHHH
Q psy3701 193 NHNYTVAENCFME 205 (342)
Q Consensus 193 ~~~~~~A~~~~~~ 205 (342)
.|.-+.+...+++
T Consensus 285 ~g~~Dp~~~~~RR 297 (304)
T COG3118 285 FGPADPLVLAYRR 297 (304)
T ss_pred cCCCCHHHHHHHH
Confidence 7765555555554
No 253
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.90 E-value=2.6e-05 Score=40.77 Aligned_cols=32 Identities=31% Similarity=0.625 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701 285 STFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316 (342)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 316 (342)
.+|+.+|.++..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34566666666666666666666666666663
No 254
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.89 E-value=0.0026 Score=47.30 Aligned_cols=94 Identities=15% Similarity=-0.057 Sum_probs=47.4
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701 82 YAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL 158 (342)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 158 (342)
..++..+...+++++|+..++.++....+. .-+-.+++++...+|.+++|+..+...-...- .+...-..|.++..
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~ 171 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHH
Confidence 445566666666666666666665433221 22344556666666666666655443321100 01112234555555
Q ss_pred hCCHHHHHHHHHHHHhhC
Q psy3701 159 TNNARLASKFFDLALSIA 176 (342)
Q Consensus 159 ~~~~~~A~~~~~~~~~~~ 176 (342)
.|+-++|+..|++++...
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 555555555555555554
No 255
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.88 E-value=0.0029 Score=53.34 Aligned_cols=144 Identities=13% Similarity=0.050 Sum_probs=111.1
Q ss_pred HHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc--------------CCC------------cH---HHHHHhhh
Q psy3701 70 LVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL--------------DKL------------FL---PAWLMYGH 120 (342)
Q Consensus 70 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------~~~------------~~---~~~~~la~ 120 (342)
++..+|-+.+++..++.++..+|+.+.|.+++++|+-. ++. |- .+.+....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 45779999999999999999999999999999988532 111 11 23556677
Q ss_pred HHHhhccHHHHHHHHHHHhccCCC-CchHHHHH-HHHHhhhCCHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHh
Q psy3701 121 SFAVENEHDQAMAAYFNAFNLFKG-CHLPALYV-GLECGLTNNARLASKFFDLALSIAH-----EDPFVIHEMGVIAYQN 193 (342)
Q Consensus 121 ~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 193 (342)
.+.+.|-+..|.+..+-.+.++|. ++...... =....+.++++--++.++....... .-|...+..+.+++..
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l 191 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL 191 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence 888999999999999999999999 77655554 4445566788877887777655211 1235567778888888
Q ss_pred cCh---------------hHHHHHHHHHHHhhhhc
Q psy3701 194 HNY---------------TVAENCFMEALSKVKQL 213 (342)
Q Consensus 194 ~~~---------------~~A~~~~~~al~~~~~~ 213 (342)
++- ++|...+++|+...|..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 888 89999999999999876
No 256
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.85 E-value=0.01 Score=48.92 Aligned_cols=185 Identities=17% Similarity=0.185 Sum_probs=126.2
Q ss_pred HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhh----ccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh----hC
Q psy3701 89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE----NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL----TN 160 (342)
Q Consensus 89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~ 160 (342)
...+++..+...+.++-... ++.....++.++... .+..+|...|+.+. ....+.+.+.+|.++.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence 34566777777777765522 235566666666543 35677888887443 34456677778887776 44
Q ss_pred CHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHhc-------ChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhh
Q psy3701 161 NARLASKFFDLALSIAHED-PFVIHEMGVIAYQNH-------NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHK 232 (342)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (342)
+..+|..+|+++....-.. ......+|.++..-. +...|...|.++-... +
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~------------------- 186 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N------------------- 186 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C-------------------
Confidence 8888888888887764333 234677777776542 2236777777766554 2
Q ss_pred HHHHHHHhchhccCCCChHHHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC----------
Q psy3701 233 AEDKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG---------- 298 (342)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g---------- 298 (342)
..+...+|.+|.. ..++.+|..+|.++-+... ...++.++ ++...|
T Consensus 187 -----------------~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~ 246 (292)
T COG0790 187 -----------------PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLT 246 (292)
T ss_pred -----------------HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcc
Confidence 4678888888854 3488999999999998776 77888888 666665
Q ss_pred -----ChHHHHHHHHHHHhcccCch
Q psy3701 299 -----DLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 299 -----~~~~A~~~~~~al~~~p~~~ 318 (342)
+...|..++..+....+...
T Consensus 247 ~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 247 AAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred cccCCCHHHHHHHHHHHHHcCChhH
Confidence 78888999988887765444
No 257
>KOG1550|consensus
Probab=97.85 E-value=0.02 Score=51.62 Aligned_cols=270 Identities=17% Similarity=0.107 Sum_probs=171.1
Q ss_pred HHHHHHHHHhHHHHh-----hccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-----ChHHHHH
Q psy3701 30 MKSALLLLKGRVYEA-----LENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-----RSDPARR 99 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~-----~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-----~~~~A~~ 99 (342)
-.....+.+|.++.. ..|.+.|+.+|+.+... +.+.... ..+.+.+.+|.+|.+.. +...|..
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~-----~~~~a~~--~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~ 314 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAES-----FKKAATK--GLPPAQYGLGRLYLQGLGVEKIDYEKALK 314 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH-----HHHHHhh--cCCccccHHHHHHhcCCCCccccHHHHHH
Confidence 344455566666654 36889999999987421 1111111 25567889999998854 6788999
Q ss_pred HHHHHhhcCCCcHHHHHHhhhHHHhhc---cHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh----CCHHHHHHHHHHH
Q psy3701 100 FLGKATSLDKLFLPAWLMYGHSFAVEN---EHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT----NNARLASKFFDLA 172 (342)
Q Consensus 100 ~~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~ 172 (342)
+|.++-... ++++.+.+|.++.... +...|..+|..+... .+..+.+.++.+|..- .+...|..++.++
T Consensus 315 ~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~a 390 (552)
T KOG1550|consen 315 LYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKA 390 (552)
T ss_pred HHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence 999998775 4677888898887766 578999999999765 4567888888887643 4889999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHh-cChhHHHHHHHHHHHhhhhcCccccccchhhHHHH---hhh----hHHHHHHHhchhc
Q psy3701 173 LSIAHEDPFVIHEMGVIAYQN-HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN---LGH----KAEDKVKQLGGEI 244 (342)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~ 244 (342)
-+.. ++.+...++..+... +++..+...+.......-... .....+...... ..+ ......... ...
T Consensus 391 A~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~--q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~a 465 (552)
T KOG1550|consen 391 AEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVA--QSNAAYLLDQSEEDLFSRGVISTLERAFSLY-SRA 465 (552)
T ss_pred HHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHH--hhHHHHHHHhccccccccccccchhHHHHHH-HHH
Confidence 8877 455555555554433 777766665555444332221 000000000000 000 000000000 011
Q ss_pred cCCCChHHHHHHHHHHHHh----hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHh---CChHHHHHHHHHHHhcccCc
Q psy3701 245 IADKWEPLLNNLGHVNRKL----KKYEEALEFHKQALVVAPMKASTFCCIGYIQALT---GDLDSAVNYFHKTMALKRDD 317 (342)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~ 317 (342)
.......+...+|.+|..- .+++.|...|.++.... ....+++|.++..- .+...|.+++.++.+.+.+.
T Consensus 466 ~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 466 AAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred HhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 2233356777778777654 45899999999998776 88889999888631 12789999999998876644
Q ss_pred h
Q psy3701 318 S 318 (342)
Q Consensus 318 ~ 318 (342)
.
T Consensus 543 ~ 543 (552)
T KOG1550|consen 543 Y 543 (552)
T ss_pred h
Confidence 3
No 258
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=0.0016 Score=48.31 Aligned_cols=61 Identities=21% Similarity=0.092 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-ASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 314 (342)
+-..++.+...+|++++|+..+..... +.. +..-...|.++...|+.++|+..|+++++..
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 444555666666666666555544321 111 2233445666666666666666666666655
No 259
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.84 E-value=0.0039 Score=51.96 Aligned_cols=135 Identities=10% Similarity=-0.005 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH---hcChhHHHHHHH
Q psy3701 128 HDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ---NHNYTVAENCFM 204 (342)
Q Consensus 128 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~ 204 (342)
.+.-+..+++|++.+|++...+..+-....+..+.++..+-+++++..+|+++.+|...-..... .-.++.....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 35567778888888888777777777777777788888888888888888888887665444333 234677888888
Q ss_pred HHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701 205 EALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 280 (342)
Q Consensus 205 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 280 (342)
+++..-....... ......... .......++..+.....+.|..+.|+..++-.++.+
T Consensus 127 ~~l~~L~~~~~~~-----~~~~~~~~~-------------~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGR-----MTSHPDLPE-------------LEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccc-----cccccchhh-------------HHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 8877544331000 000000000 001113566777788889999999999999999875
No 260
>KOG0530|consensus
Probab=97.84 E-value=0.0082 Score=46.83 Aligned_cols=206 Identities=12% Similarity=0.057 Sum_probs=151.5
Q ss_pred HHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhh-ccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHH-H
Q psy3701 87 YYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE-NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNAR-L 164 (342)
Q Consensus 87 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~-~ 164 (342)
+..+...-+.|++....++.++|.+-.+|...-.++..+ .+..+-++++.+.++-+|.+..+|...-.+....|++. .
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence 444556778999999999999999988887776666554 46788899999999999999999999988888899888 8
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhc
Q psy3701 165 ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI 244 (342)
Q Consensus 165 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (342)
-++..+.++..+..+..+|...-.+...-+.|+.-+.+..+.++.+-.+.
T Consensus 132 ELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN------------------------------ 181 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN------------------------------ 181 (318)
T ss_pred hHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc------------------------------
Confidence 88999999999999999999999999999999999999999999887663
Q ss_pred cCCCChHHHHHHHHHH------HHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH-hC--ChHHHHHHHHHHH-hcc
Q psy3701 245 IADKWEPLLNNLGHVN------RKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL-TG--DLDSAVNYFHKTM-ALK 314 (342)
Q Consensus 245 ~~~~~~~~~~~l~~~~------~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~al-~~~ 314 (342)
.+|...-.+. ...-..+.-+.+..+.+...|++..+|..|.-++.. .| ...+-........ +..
T Consensus 182 ------SAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~ 255 (318)
T KOG0530|consen 182 ------SAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLP 255 (318)
T ss_pred ------chhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccC
Confidence 1222110000 011233455677788888999999999888877775 44 1233333333333 333
Q ss_pred cCchhHHhHHHHHH
Q psy3701 315 RDDSFATTMLSYVI 328 (342)
Q Consensus 315 p~~~~~~~~l~~~~ 328 (342)
-..|.....|..++
T Consensus 256 ~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 256 KRSPFLLAFLLDLY 269 (318)
T ss_pred CCChhHHHHHHHHH
Confidence 34455444444444
No 261
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.84 E-value=0.00065 Score=49.53 Aligned_cols=117 Identities=10% Similarity=-0.072 Sum_probs=74.0
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccH-HHHHHHHHHHhccCCCCchHHHHHHHHHhhhC
Q psy3701 82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH-DQAMAAYFNAFNLFKGCHLPALYVGLECGLTN 160 (342)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 160 (342)
...|......++.+.++..+++++.+.....-.-..- ..+ ......++.. ...+...++..+...|
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~ 76 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALLEAG 76 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhcc
Confidence 3345555666777888888888877643321100000 000 1111111111 1224455777788899
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhh
Q psy3701 161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVK 211 (342)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 211 (342)
++++|+..+++++..+|.+..++..+..++...|+..+|+..|++....-.
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998866543
No 262
>KOG1308|consensus
Probab=97.76 E-value=4.8e-05 Score=61.02 Aligned_cols=92 Identities=15% Similarity=0.039 Sum_probs=71.5
Q ss_pred HHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHH
Q psy3701 86 CYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLA 165 (342)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 165 (342)
.-.+..|.+++|++.|.+++.++|.....+...+.++...++...|+..+..+++++|+....+-+.+.....+|++.+|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 34455677888888888888888888777888888888888888888888888888888777777778888888888888
Q ss_pred HHHHHHHHhhCC
Q psy3701 166 SKFFDLALSIAH 177 (342)
Q Consensus 166 ~~~~~~~~~~~~ 177 (342)
...+..+.+++-
T Consensus 202 a~dl~~a~kld~ 213 (377)
T KOG1308|consen 202 AHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHhccc
Confidence 888887777653
No 263
>KOG0985|consensus
Probab=97.75 E-value=0.013 Score=54.34 Aligned_cols=222 Identities=14% Similarity=0.021 Sum_probs=151.3
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF 111 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 111 (342)
.++|..+|.+....|...+|++.|-++ +++..+........+.|.|++-++++..+-+....
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----------------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E- 1165 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----------------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE- 1165 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----------------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-
Confidence 467778888888888888888888885 35566778888889999999999999887664322
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701 112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY 191 (342)
Q Consensus 112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (342)
+..-..+..+|.+.++..+-.+.. ..|+ ..-....|.-++..|.|+.|.-.|.. ..-|..++..+.
T Consensus 1166 ~~id~eLi~AyAkt~rl~elE~fi-----~gpN-~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV 1231 (1666)
T KOG0985|consen 1166 PYIDSELIFAYAKTNRLTELEEFI-----AGPN-VANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLV 1231 (1666)
T ss_pred ccchHHHHHHHHHhchHHHHHHHh-----cCCC-chhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHH
Confidence 333345556677777776655542 2344 33345578888888999988877764 344778999999
Q ss_pred HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701 192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE 271 (342)
Q Consensus 192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 271 (342)
.+|+|+.|+...+++-. ...|....+..-+..+-.+.+.-....- -.++-+-.+...|...|-+++-+.
T Consensus 1232 ~LgeyQ~AVD~aRKAns----------~ktWK~VcfaCvd~~EFrlAQiCGL~ii-vhadeLeeli~~Yq~rGyFeElIs 1300 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKANS----------TKTWKEVCFACVDKEEFRLAQICGLNII-VHADELEELIEYYQDRGYFEELIS 1300 (1666)
T ss_pred HHHHHHHHHHHhhhccc----------hhHHHHHHHHHhchhhhhHHHhcCceEE-EehHhHHHHHHHHHhcCcHHHHHH
Confidence 99999999998887633 2234443333333222222222111110 013455667788889999999999
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHH
Q psy3701 272 FHKQALVVAPMKASTFCCIGYIQAL 296 (342)
Q Consensus 272 ~~~~al~~~~~~~~~~~~l~~~~~~ 296 (342)
.++.++.+..-+...+..+|.+|.+
T Consensus 1301 l~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1301 LLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHh
Confidence 9999988877676667777777654
No 264
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.74 E-value=6.5e-05 Score=39.17 Aligned_cols=32 Identities=41% Similarity=0.648 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Q psy3701 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 282 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 282 (342)
.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999999885
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.74 E-value=0.016 Score=47.26 Aligned_cols=160 Identities=15% Similarity=0.066 Sum_probs=105.5
Q ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCc----HHHHHHHHHHHHHhC-ChHHHHHHHHHHhhcC----C--
Q psy3701 42 YEALENRALAADCYKGALLADLFKLAHELV-DLYPDS----AIAWYAVGCYYYLIG-RSDPARRFLGKATSLD----K-- 109 (342)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~-~~~p~~----~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~----~-- 109 (342)
...+|+++.|..++.++. ... ..+|+. ...+++.|......+ +++.|..+++++.+.- +
T Consensus 3 A~~~~~~~~A~~~~~K~~---------~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~ 73 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAK---------DLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMD 73 (278)
T ss_pred chhhCCHHHHHHHHHHhh---------hHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcc
Confidence 457899999999999974 111 335543 457788899999999 9999999999998772 1
Q ss_pred -Cc-------HHHHHHhhhHHHhhccHH---HHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCC-
Q psy3701 110 -LF-------LPAWLMYGHSFAVENEHD---QAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAH- 177 (342)
Q Consensus 110 -~~-------~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 177 (342)
.. ..++..++.++...+.++ +|....+.+-...|+.+..+...-.+..+.++.+++.+.+.+++...+
T Consensus 74 ~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~ 153 (278)
T PF08631_consen 74 KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH 153 (278)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc
Confidence 11 234677888888877654 455566666666677676665555555558899999999999887654
Q ss_pred CChHHHHHHHHH-HHHhcChhHHHHHHHHHHHhh
Q psy3701 178 EDPFVIHEMGVI-AYQNHNYTVAENCFMEALSKV 210 (342)
Q Consensus 178 ~~~~~~~~l~~~-~~~~~~~~~A~~~~~~al~~~ 210 (342)
.....-..+..+ .........|...+...+...
T Consensus 154 ~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r 187 (278)
T PF08631_consen 154 SESNFDSILHHIKQLAEKSPELAAFCLDYLLLNR 187 (278)
T ss_pred ccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 222221222222 112234456777777666543
No 266
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.72 E-value=0.0046 Score=51.53 Aligned_cols=147 Identities=10% Similarity=-0.087 Sum_probs=112.0
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhCC------------hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHH
Q psy3701 67 AHELVDLYPDSAIAWYAVGCYYYLIGR------------SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134 (342)
Q Consensus 67 ~~~~~~~~p~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 134 (342)
+++.+..+|.+..+|..+....-..-. .+.-+..+++|++.+|++...+..+-.+.....+.++..+.
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344578899999999999876654432 45667889999999999999999888888889999999999
Q ss_pred HHHHhccCCCCchHHHHHHHHHhh---hCCHHHHHHHHHHHHhhCCC------------------ChHHHHHHHHHHHHh
Q psy3701 135 YFNAFNLFKGCHLPALYVGLECGL---TNNARLASKFFDLALSIAHE------------------DPFVIHEMGVIAYQN 193 (342)
Q Consensus 135 ~~~al~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~------------------~~~~~~~l~~~~~~~ 193 (342)
+++++..+|++...|...-..... .-.++.....|.+++..-.. -..++..+.......
T Consensus 88 we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~a 167 (321)
T PF08424_consen 88 WEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQA 167 (321)
T ss_pred HHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHC
Confidence 999999999988777664333222 23566777777777653210 123456677778889
Q ss_pred cChhHHHHHHHHHHHhhhhc
Q psy3701 194 HNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 194 ~~~~~A~~~~~~al~~~~~~ 213 (342)
|-.+.|+..++-.++.+=-.
T Consensus 168 G~~E~Ava~~Qa~lE~n~~~ 187 (321)
T PF08424_consen 168 GYTERAVALWQALLEFNFFR 187 (321)
T ss_pred CchHHHHHHHHHHHHHHcCC
Confidence 99999999999999987433
No 267
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.70 E-value=0.00034 Score=40.30 Aligned_cols=46 Identities=11% Similarity=0.255 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701 286 TFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331 (342)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 331 (342)
.++.+|..+.++|++++|..+.+.++++.|++..+......+-.+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777777766655554443
No 268
>KOG1308|consensus
Probab=97.66 E-value=6e-05 Score=60.49 Aligned_cols=95 Identities=14% Similarity=-0.019 Sum_probs=86.9
Q ss_pred hhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhH
Q psy3701 119 GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTV 198 (342)
Q Consensus 119 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (342)
+.-....|.++.|++.|..++.++|.....+...+.++.++++...|+.-+..++.++|+...-+-..|.....+|+|++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 33455678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhc
Q psy3701 199 AENCFMEALSKVKQL 213 (342)
Q Consensus 199 A~~~~~~al~~~~~~ 213 (342)
|...+..+.+++-+.
T Consensus 201 aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 201 AAHDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHHHhccccH
Confidence 999999998876544
No 269
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.64 E-value=0.03 Score=47.42 Aligned_cols=216 Identities=10% Similarity=0.052 Sum_probs=139.8
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc---
Q psy3701 65 KLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL--- 141 (342)
Q Consensus 65 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 141 (342)
-++++++.--|-.++.|+-........++-++|+...++++...|. ....++.++...++.+.-..+|++..+.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence 3445556667778888988888888899999999999998888876 4556666666666655555555544322
Q ss_pred ---------------CCCC-ch-----------HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHHh
Q psy3701 142 ---------------FKGC-HL-----------PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI-AYQN 193 (342)
Q Consensus 142 ---------------~~~~-~~-----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 193 (342)
+|.. ++ ++...-..-.+..-.+.|...|-++-+..-..+.++..-|.+ +...
T Consensus 366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~ 445 (660)
T COG5107 366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT 445 (660)
T ss_pred HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc
Confidence 1100 00 111111222333445666777776655432334444444433 4557
Q ss_pred cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q psy3701 194 HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFH 273 (342)
Q Consensus 194 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 273 (342)
|++.-|-..|+-.+...|+++ ..-...-..+...++-..|...|
T Consensus 446 ~d~~ta~~ifelGl~~f~d~~------------------------------------~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 446 GDRATAYNIFELGLLKFPDST------------------------------------LYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred CCcchHHHHHHHHHHhCCCch------------------------------------HHHHHHHHHHHHhCcHHHHHHHH
Confidence 888888888888888888874 23333444566788889999999
Q ss_pred HHHHhhCCCc--hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701 274 KQALVVAPMK--ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF 319 (342)
Q Consensus 274 ~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 319 (342)
++++..-... ..+|..+-..-..-|+...+...=++..++.|....
T Consensus 490 etsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 490 ETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 9887654333 456666666667778888888888888888886543
No 270
>KOG1258|consensus
Probab=97.62 E-value=0.039 Score=48.35 Aligned_cols=120 Identities=10% Similarity=-0.027 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHH---HHhhhhHHHH-HHHhchhccCCCChHHHHH
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLL---NNLGHKAEDK-VKQLGGEIIADKWEPLLNN 255 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 255 (342)
...|......-...|+++...-.|++++--..... ..|.... ...+...-.. ..........+..+.+...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~-----efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD-----EFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH-----HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 34677777777889999999999999887655542 2222111 1111111111 0011112233444556666
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHH
Q psy3701 256 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAV 304 (342)
Q Consensus 256 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 304 (342)
-+..-...|++..|...+++..+..|+...+-........+.|+.+.+.
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 6666777788888888888888777777777666677777777777777
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.59 E-value=8.7e-05 Score=39.24 Aligned_cols=25 Identities=24% Similarity=0.598 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701 287 FCCIGYIQALTGDLDSAVNYFHKTM 311 (342)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~al 311 (342)
+.++|.+|...|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 272
>KOG1258|consensus
Probab=97.58 E-value=0.046 Score=47.97 Aligned_cols=191 Identities=12% Similarity=-0.027 Sum_probs=146.5
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC-CCCchHHHHHHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF-KGCHLPALYVGLE 155 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 155 (342)
+...|......-...|+++...-.|++++--.....+.|...+.-....|+.+-|-..+.++.+.. |..+.....-+..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 456777888888899999999999999998888889999999999999999999999998888875 5667777778888
Q ss_pred HhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHH-hhhhcCccccccchhhHHHHhhhhHH
Q psy3701 156 CGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS-KVKQLGGEIIADKWEPLLNNLGHKAE 234 (342)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (342)
.-..|++..|...+++.....|+...+-.....+....|+.+.+.. ....+. ..+...
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~~~-------------------- 434 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY-KNELYSSIYEGKE-------------------- 434 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhccccc--------------------
Confidence 8889999999999999998889988888888888889999888874 222221 111110
Q ss_pred HHHHHhchhccCCCChHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC
Q psy3701 235 DKVKQLGGEIIADKWEPLLNNLGHVN-RKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG 298 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 298 (342)
........+...+... .-.++.+.|...+.+++...|.+...+..+.......+
T Consensus 435 ----------~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 435 ----------NNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred ----------CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 0111123334444433 34578889999999999999999888877777666554
No 273
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.58 E-value=0.0076 Score=50.90 Aligned_cols=98 Identities=11% Similarity=-0.027 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhh-cCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQ-LGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR 261 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (342)
.+.....+.+.|-+..|.++.+-.+.++|. ++ ..+...+-....
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP-----------------------------------~g~ll~ID~~AL 150 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP-----------------------------------LGVLLFIDYYAL 150 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc-----------------------------------chhHHHHHHHHH
Confidence 445566677888888888888888888888 54 334444555556
Q ss_pred HhhhHHHHHHHHHHHHhhCC-----CchHHHHHHHHHHHHhCCh---------------HHHHHHHHHHHhccc
Q psy3701 262 KLKKYEEALEFHKQALVVAP-----MKASTFCCIGYIQALTGDL---------------DSAVNYFHKTMALKR 315 (342)
Q Consensus 262 ~~g~~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~g~~---------------~~A~~~~~~al~~~p 315 (342)
+.++++--+..++....... .-|..-+..+.++...++. +.|...+++|+...|
T Consensus 151 rs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 151 RSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred hcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 66777766666665544211 1335566777888888887 889999999988877
No 274
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.56 E-value=0.00016 Score=37.27 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701 287 FCCIGYIQALTGDLDSAVNYFHKTMALKRD 316 (342)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 316 (342)
++.+|.++...|++++|+..|+++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444455555555555555555555554443
No 275
>KOG1464|consensus
Probab=97.56 E-value=0.012 Score=46.24 Aligned_cols=200 Identities=13% Similarity=0.088 Sum_probs=116.6
Q ss_pred hCChHHHHHHHHHHhhcCCCcHH----HHHHhhhHHHhhccHHHHHHHHHHHhccCCC-----CchHHHHHHHHHh-hhC
Q psy3701 91 IGRSDPARRFLGKATSLDKLFLP----AWLMYGHSFAVENEHDQAMAAYFNAFNLFKG-----CHLPALYVGLECG-LTN 160 (342)
Q Consensus 91 ~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~-~~~ 160 (342)
..+.++|+..|++.+++.+...+ ++-.+..+.+..|++++-+..|.+.+..-.. ...-..+-..-|. ...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34788999999999999887543 5666778888999999988888887754221 1111111111111 122
Q ss_pred CHHHHHHHHHHHHhh--CCCChHHH----HHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701 161 NARLASKFFDLALSI--AHEDPFVI----HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE 234 (342)
Q Consensus 161 ~~~~A~~~~~~~~~~--~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (342)
+.+--...|+..+.. +..+...| ..+|.+++..++|.+-.+.+++.-.......|+-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~--------------- 184 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQ--------------- 184 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhh---------------
Confidence 333333333333221 22233444 368999999999988877777765544333211000
Q ss_pred HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch--HH----HHHHHHHHHHhCChHHHHHHHH
Q psy3701 235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA--ST----FCCIGYIQALTGDLDSAVNYFH 308 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~----~~~l~~~~~~~g~~~~A~~~~~ 308 (342)
.......++|..-...|..+++..+-...|++++.+...-| .+ .-.=|..+.+.|++++|-..|-
T Consensus 185 ---------kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFF 255 (440)
T KOG1464|consen 185 ---------KKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF 255 (440)
T ss_pred ---------hccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHH
Confidence 01111134455555667777777777778888876653322 22 2223555677888888888887
Q ss_pred HHHhcc
Q psy3701 309 KTMALK 314 (342)
Q Consensus 309 ~al~~~ 314 (342)
.+..-.
T Consensus 256 EAFKNY 261 (440)
T KOG1464|consen 256 EAFKNY 261 (440)
T ss_pred HHHhcc
Confidence 777653
No 276
>KOG3616|consensus
Probab=97.50 E-value=0.0082 Score=53.78 Aligned_cols=159 Identities=11% Similarity=0.021 Sum_probs=92.9
Q ss_pred HhHHHHhhccHHHHHHHHHHHH--------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701 38 KGRVYEALENRALAADCYKGAL--------------LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGK 103 (342)
Q Consensus 38 ~g~~~~~~~~~~~A~~~~~~~~--------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 103 (342)
-|.-+...|+++.|+..|-++. |.+|+.+.+.+.... .....+-.++.-|...|+++.|.+.|.+
T Consensus 712 wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHh
Confidence 4556677788888888776654 456666666543322 2233455678888999999999999877
Q ss_pred HhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc-hHHHHHHHHHhh-------------hCCHHHHHHHH
Q psy3701 104 ATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH-LPALYVGLECGL-------------TNNARLASKFF 169 (342)
Q Consensus 104 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~l~~~~~~-------------~~~~~~A~~~~ 169 (342)
+-. ...-...|...|++.+|.+.-.+... |... ..+...+.-+-. .|.++.|++.|
T Consensus 791 ~~~--------~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmy 860 (1636)
T KOG3616|consen 791 ADL--------FKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMY 860 (1636)
T ss_pred cch--------hHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHH
Confidence 522 22233456677888887777666543 2211 122222222333 34444555555
Q ss_pred HHHHh----------hCCCC-hHHHHHHHHHHHHhcChhHHHHHHHHHH
Q psy3701 170 DLALS----------IAHED-PFVIHEMGVIAYQNHNYTVAENCFMEAL 207 (342)
Q Consensus 170 ~~~~~----------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al 207 (342)
.+.-. ..|+. .+.+..+|.-+...|+.+.|...|-++-
T Consensus 861 dk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 861 DKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 43211 11221 2345667777777888888777776653
No 277
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.49 E-value=0.00038 Score=35.85 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 283 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 283 (342)
+++.+|.++...|++++|+..|++.++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 67899999999999999999999999999974
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.48 E-value=0.00029 Score=37.23 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
++..+|.+|...|+|++|+.+|++++.+.++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 36788999999999999999999977665544
No 279
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.48 E-value=0.043 Score=45.26 Aligned_cols=154 Identities=17% Similarity=0.069 Sum_probs=113.6
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh----CChHHHHHHHHHHhhcCCCcHHHH
Q psy3701 40 RVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLI----GRSDPARRFLGKATSLDKLFLPAW 115 (342)
Q Consensus 40 ~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~ 115 (342)
......+++..|...+..+- . -.++.....++.+|... .+..+|..+|+.+ ....++.+.
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~------------~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~ 112 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAA------------E--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEAL 112 (292)
T ss_pred ccccccccHHHHHHHHHHhh------------h--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHH
Confidence 33445677777777777752 1 23447778888888754 3678899999954 445567888
Q ss_pred HHhhhHHHh----hccHHHHHHHHHHHhccCCCC-chHHHHHHHHHhhhC-------CHHHHHHHHHHHHhhCCCChHHH
Q psy3701 116 LMYGHSFAV----ENEHDQAMAAYFNAFNLFKGC-HLPALYVGLECGLTN-------NARLASKFFDLALSIAHEDPFVI 183 (342)
Q Consensus 116 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~ 183 (342)
+.+|.++.. ..+..+|..+|+++.+..-.. ..+...++..+..-. +...|...|.++-... ++.+.
T Consensus 113 ~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~ 190 (292)
T COG0790 113 FNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQ 190 (292)
T ss_pred HhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHH
Confidence 899999887 458999999999999875443 234777777776642 3347888998887765 78888
Q ss_pred HHHHHHHHH----hcChhHHHHHHHHHHHhhh
Q psy3701 184 HEMGVIAYQ----NHNYTVAENCFMEALSKVK 211 (342)
Q Consensus 184 ~~l~~~~~~----~~~~~~A~~~~~~al~~~~ 211 (342)
..+|.+|.. ..++++|..+|.++-+...
T Consensus 191 ~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 191 LLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999988865 3478999999999988765
No 280
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.47 E-value=0.0013 Score=43.11 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc--hhHHhHHHHHHHHhhhcC
Q psy3701 269 ALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD--SFATTMLSYVIEQLIEES 335 (342)
Q Consensus 269 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~ 335 (342)
.+..+++.++.+|++..+.+.++..+...|++++|++.+-.+++.+|++ ..+...+-.++..++...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3566788888999999999999999999999999999999999988766 577777877877776544
No 281
>KOG1550|consensus
Probab=97.45 E-value=0.039 Score=49.84 Aligned_cols=133 Identities=20% Similarity=0.166 Sum_probs=88.2
Q ss_pred CCCcHHHHHHHHHHHHHh-----CChHHHHHHHHHHhhc-----CCCcHHHHHHhhhHHHhhc-----cHHHHHHHHHHH
Q psy3701 74 YPDSAIAWYAVGCYYYLI-----GRSDPARRFLGKATSL-----DKLFLPAWLMYGHSFAVEN-----EHDQAMAAYFNA 138 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~a 138 (342)
+-.+..+...+|.++..- .|.+.|+.+|+.+... ....+.+.+.+|.+|.... +...|+.+|.++
T Consensus 240 ~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a 319 (552)
T KOG1550|consen 240 KLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA 319 (552)
T ss_pred hhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence 445677788888888765 5788888888888661 1114456677777777643 566777777777
Q ss_pred hccCCCCchHHHHHHHHHhhhC---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh----cChhHHHHHHHHHHHhh
Q psy3701 139 FNLFKGCHLPALYVGLECGLTN---NARLASKFFDLALSIAHEDPFVIHEMGVIAYQN----HNYTVAENCFMEALSKV 210 (342)
Q Consensus 139 l~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~ 210 (342)
-... ++.+.+.+|.++..-. +...|.++|..+... .+..+.+.++.++..- .+...|..++.++.+..
T Consensus 320 A~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 320 AELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 6654 3456667777766544 456777777777653 3566677777776542 35667777777777665
No 282
>PRK10941 hypothetical protein; Provisional
Probab=97.44 E-value=0.0023 Score=51.29 Aligned_cols=77 Identities=18% Similarity=0.100 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 326 (342)
.....++-.++.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++.-++..|+++.+...-.+
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 45777888899999999999999999999999999999999999999999999999999999999999977654433
No 283
>KOG0890|consensus
Probab=97.37 E-value=0.22 Score=50.95 Aligned_cols=274 Identities=9% Similarity=-0.061 Sum_probs=151.5
Q ss_pred HHhHHHHhhccHHHHHHHHHHHH----H---HHHHH-----HHHHHHhcCCCcHHHHH----------HHHHHHHHhCCh
Q psy3701 37 LKGRVYEALENRALAADCYKGAL----L---ADLFK-----LAHELVDLYPDSAIAWY----------AVGCYYYLIGRS 94 (342)
Q Consensus 37 ~~g~~~~~~~~~~~A~~~~~~~~----~---~~a~~-----~~~~~~~~~p~~~~~~~----------~l~~~~~~~~~~ 94 (342)
.++++-...+.|.+|+-++++-. . .++.- +|..+ .+|+....-. ..-..+...|++
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i--~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSI--HDPDGVEGVSARRFADPSLYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhc--CCcchhhhHHHHhhcCccHHHHHHHHHhhccH
Confidence 46667777788888887777721 1 11111 11111 2444333222 223344567889
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH-HHhhhCCHHHHHHHHH---
Q psy3701 95 DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL-ECGLTNNARLASKFFD--- 170 (342)
Q Consensus 95 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~--- 170 (342)
..|..+|+++++.+|+....+...-......|.+...+...+-.....++...-+..++. +-.+.++++.-.....
T Consensus 1466 ~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n 1545 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLSDRN 1545 (2382)
T ss_pred HHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhhccc
Confidence 999999999999998877777777777777788877777665555544443433433322 2345555555444422
Q ss_pred ----------HH-HhhCCCChHHH-HHHHHHHH----------HhcChhHHHHHHHHHHH-------------hhhhcCc
Q psy3701 171 ----------LA-LSIAHEDPFVI-HEMGVIAY----------QNHNYTVAENCFMEALS-------------KVKQLGG 215 (342)
Q Consensus 171 ----------~~-~~~~~~~~~~~-~~l~~~~~----------~~~~~~~A~~~~~~al~-------------~~~~~~~ 215 (342)
+. +.....+.-.. ..+...-. ..|-|..+.++.-+.-. ..++...
T Consensus 1546 ~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s 1625 (2382)
T KOG0890|consen 1546 IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDS 1625 (2382)
T ss_pred ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccc
Confidence 00 11111111100 00000000 00122222222222111 1111112
Q ss_pred cccccchhhHHHHhhhhHH--HHHHHhch--------hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchH
Q psy3701 216 EIIADKWEPLLNNLGHKAE--DKVKQLGG--------EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 285 (342)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 285 (342)
......|...+...+.... +.+-.+++ ........+.|...|.+....|+++.|..++-+|.+.. -+.
T Consensus 1626 ~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~ 1703 (2382)
T KOG0890|consen 1626 ANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPE 1703 (2382)
T ss_pred cccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cch
Confidence 2223344443333332221 11111111 12355678899999999999999999999999998766 567
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701 286 TFCCIGYIQALTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 314 (342)
+....|..++.+|+...|+..+++.++.+
T Consensus 1704 i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1704 IVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 88899999999999999999999999653
No 284
>KOG3364|consensus
Probab=97.36 E-value=0.0073 Score=41.96 Aligned_cols=84 Identities=8% Similarity=0.126 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHh---hhHHHHHHHHHHHHh-hCCC-chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701 250 EPLLNNLGHVNRKL---KKYEEALEFHKQALV-VAPM-KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML 324 (342)
Q Consensus 250 ~~~~~~l~~~~~~~---g~~~~A~~~~~~al~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 324 (342)
....+++++++.+. .+..+.+..++..++ -.|. ..+..+.++..+.+.|+|+.++.+....++..|++..+...-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 56888999998765 456788999999996 4443 346788899999999999999999999999999999988776
Q ss_pred HHHHHHhhh
Q psy3701 325 SYVIEQLIE 333 (342)
Q Consensus 325 ~~~~~~~~~ 333 (342)
..+.....+
T Consensus 112 ~~ied~itk 120 (149)
T KOG3364|consen 112 ETIEDKITK 120 (149)
T ss_pred HHHHHHHhh
Confidence 666655543
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.34 E-value=0.004 Score=45.06 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
..+..+..+-...++.+++...+...--+.|..+..-..-|.++...|+|.+|+..++.+.+..|..+.+..+++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34444455555556666666666665556666666666666666666666666666666666666666666666666644
Q ss_pred h
Q psy3701 331 L 331 (342)
Q Consensus 331 ~ 331 (342)
.
T Consensus 91 ~ 91 (160)
T PF09613_consen 91 L 91 (160)
T ss_pred c
Confidence 3
No 286
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.33 E-value=0.13 Score=47.47 Aligned_cols=117 Identities=9% Similarity=-0.016 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC--c-------HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc--
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL--F-------LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH-- 146 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-- 146 (342)
|..-...+.......++.+|..+..++-..-|. . ....-..|.+....|++++|++..+.++..-|.+.
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 344445566666677777777776665543222 1 12334456666677777777777777777666532
Q ss_pred ---hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhc
Q psy3701 147 ---LPALYVGLECGLTNNARLASKFFDLALSIAHED------PFVIHEMGVIAYQNH 194 (342)
Q Consensus 147 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~ 194 (342)
.+...+|.+..-.|++++|..+..++.+..... ..+....+.++..+|
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 234446666667777777777777666553211 122334455666666
No 287
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.33 E-value=0.0031 Score=42.31 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=22.3
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701 131 AMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALS 174 (342)
Q Consensus 131 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 174 (342)
+++++.++..+.|..+..++.+|.-+....-|+++..-.++++.
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 44455555555555544555555544444455555555555544
No 288
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.31 E-value=0.083 Score=44.86 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=32.4
Q ss_pred HhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHH
Q psy3701 71 VDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWL 116 (342)
Q Consensus 71 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 116 (342)
++.+|++...|+.+...+-.+|.+++-.+.+++...-.|-.+.+|.
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ 80 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWR 80 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHH
Confidence 5677777777777777777777777777777777666665554443
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.29 E-value=0.0048 Score=44.64 Aligned_cols=77 Identities=13% Similarity=-0.063 Sum_probs=36.4
Q ss_pred hhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC
Q psy3701 119 GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN 195 (342)
Q Consensus 119 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (342)
..+-...++.+++...+...--+.|..+..-..-|.++...|++.+|+..++.+....|..+.+--.++.|+..+|+
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33333444444444444444444444444444444444444455555544444444444444444444444444444
No 290
>KOG2300|consensus
Probab=97.27 E-value=0.097 Score=44.84 Aligned_cols=168 Identities=14% Similarity=0.016 Sum_probs=117.5
Q ss_pred HhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD-------SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 38 ~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
+.-+-.-.|++.+|+....... . .....|. .+.....+|.....-+.++.|...|..+.+.-..
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~-----~----w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~ 399 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMK-----N----WCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES 399 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH-----H----HHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH
Confidence 4455556788888877666542 1 2233444 4667888899999999999999999999876433
Q ss_pred -c--HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC-------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC--
Q psy3701 111 -F--LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC-------HLPALYVGLECGLTNNARLASKFFDLALSIAHE-- 178 (342)
Q Consensus 111 -~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-- 178 (342)
+ .....++|.+|.+.|+-+.-.+..+..-..+... ..+++..|...+.++++.||...+.+.++...-
T Consensus 400 ~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed 479 (629)
T KOG2300|consen 400 IDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED 479 (629)
T ss_pred HHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh
Confidence 2 2345678999999887665554444333222111 134455677788899999999999999987521
Q ss_pred ----ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701 179 ----DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214 (342)
Q Consensus 179 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 214 (342)
..-.+..+|.+....|+..++.+..+-+++...+.+
T Consensus 480 ~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~ 519 (629)
T KOG2300|consen 480 LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP 519 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC
Confidence 122456788999999999999999999988776653
No 291
>KOG2041|consensus
Probab=97.26 E-value=0.033 Score=49.72 Aligned_cols=206 Identities=12% Similarity=-0.006 Sum_probs=121.0
Q ss_pred HhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC-----cH---HHHHHhhhHHHhhccHHHHHHHHHHHhccC
Q psy3701 71 VDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL-----FL---PAWLMYGHSFAVENEHDQAMAAYFNAFNLF 142 (342)
Q Consensus 71 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 142 (342)
++.+| ++..|..++......-.++-|...|-+.-....- -. .--...+.+-.--|++++|.+.|-.+-+.+
T Consensus 686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 34466 5899999999999888888888888765322110 00 001234555556789999999886543221
Q ss_pred CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701 143 KGCHLPALYVGLECGLTNNARLASKFFDLALSIAH--EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD 220 (342)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 220 (342)
.....+.+.|++-...+.++..-.-.. .-..++.++|..+..+..|++|.++|.+.-.....-
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~------- 829 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQI------- 829 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHH-------
Confidence 112345667777777666654322111 124678999999999999999999998754322111
Q ss_pred chhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCC
Q psy3701 221 KWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGD 299 (342)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 299 (342)
..+..+..+ . .+.. ...-|.....+-.+|..+...|.-++|.+.|-+.- .|.- --.....+++
T Consensus 830 ---ecly~le~f-~----~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pka------Av~tCv~LnQ 893 (1189)
T KOG2041|consen 830 ---ECLYRLELF-G----ELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKA------AVHTCVELNQ 893 (1189)
T ss_pred ---HHHHHHHhh-h----hHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHH------HHHHHHHHHH
Confidence 111111110 0 0111 11234444577778888888888888888776531 1211 1223455667
Q ss_pred hHHHHHHHH
Q psy3701 300 LDSAVNYFH 308 (342)
Q Consensus 300 ~~~A~~~~~ 308 (342)
|.+|.+.-+
T Consensus 894 W~~avelaq 902 (1189)
T KOG2041|consen 894 WGEAVELAQ 902 (1189)
T ss_pred HHHHHHHHH
Confidence 777766554
No 292
>KOG3824|consensus
Probab=97.21 E-value=0.0018 Score=51.63 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326 (342)
Q Consensus 254 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 326 (342)
.+.+.-..+.|+.++|...|+-++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.++..+-.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3445556778999999999999999999999999999999999999999999999999999999988776543
No 293
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.20 E-value=0.079 Score=43.32 Aligned_cols=135 Identities=14% Similarity=0.073 Sum_probs=80.1
Q ss_pred hhCCHHHHHHHHHHHHhhC-CCC-------hHHHHHHHHHHHHhc-ChhHHHHHHHHHHHhhhh-cCccccccchhhHHH
Q psy3701 158 LTNNARLASKFFDLALSIA-HED-------PFVIHEMGVIAYQNH-NYTVAENCFMEALSKVKQ-LGGEIIADKWEPLLN 227 (342)
Q Consensus 158 ~~~~~~~A~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~ 227 (342)
..|+.+.|..++.++-... ..+ ...+++.|......+ ++++|+.+++++.++-.. ..........
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~----- 79 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG----- 79 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcH-----
Confidence 4455566666655554433 222 235677788888888 999999999999988433 1000000000
Q ss_pred HhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH---HHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHH
Q psy3701 228 NLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE---EALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAV 304 (342)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 304 (342)
......++..++.++...+.++ +|....+.+-...|+.+..+...-.+..+.++.+.+.
T Consensus 80 ------------------~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~ 141 (278)
T PF08631_consen 80 ------------------SELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYE 141 (278)
T ss_pred ------------------HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHH
Confidence 0001346666777777665543 4555555555566776766655555555577778888
Q ss_pred HHHHHHHhccc
Q psy3701 305 NYFHKTMALKR 315 (342)
Q Consensus 305 ~~~~~al~~~p 315 (342)
+.+.+++...+
T Consensus 142 ~~L~~mi~~~~ 152 (278)
T PF08631_consen 142 EILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHhcc
Confidence 88777776543
No 294
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.18 E-value=0.19 Score=46.41 Aligned_cols=237 Identities=14% Similarity=0.013 Sum_probs=149.7
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701 34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD-------SAIAWYAVGCYYYLIGRSDPARRFLGKATS 106 (342)
Q Consensus 34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 106 (342)
.....+.......++.+|..+..+.. ..+ ..|. .++..-..|.+....|++++|.+..+.++.
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~---------~~l-~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~ 486 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLE---------HFL-KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV 486 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHH---------HHh-CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34456777778888888888877752 011 1111 134445568888999999999999999998
Q ss_pred cCCCc-----HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc----h--HHHHHHHHHhhhCC--HHHHHHHHHHH-
Q psy3701 107 LDKLF-----LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH----L--PALYVGLECGLTNN--ARLASKFFDLA- 172 (342)
Q Consensus 107 ~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~--~~~~l~~~~~~~~~--~~~A~~~~~~~- 172 (342)
.-|.+ ..+...+|.+..-.|++++|..+.+.+.+...... . +....+.++..+|+ +.+....+...
T Consensus 487 ~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~ 566 (894)
T COG2909 487 QLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIR 566 (894)
T ss_pred hcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 87764 34577889999999999999999999888744322 2 22234667778883 33333333322
Q ss_pred ---HhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCC
Q psy3701 173 ---LSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKW 249 (342)
Q Consensus 173 ---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (342)
+...|.+.......+.++...-+++.+..-....++...... ..+..
T Consensus 567 ~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~------------------------------~~~~~ 616 (894)
T COG2909 567 EQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT------------------------------PQPLL 616 (894)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc------------------------------cchhH
Confidence 222344444444455555544446666666666665543331 11111
Q ss_pred -hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-hH------HHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701 250 -EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-AS------TFCCIGYIQALTGDLDSAVNYFHKT 310 (342)
Q Consensus 250 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~------~~~~l~~~~~~~g~~~~A~~~~~~a 310 (342)
....+.++.+....|++++|...+.+......+. +. ++.........+|+...|..+..+.
T Consensus 617 ~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 617 SRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 1233588999999999999999999887654322 11 1111222234678988888888773
No 295
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.15 E-value=0.018 Score=38.79 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVV 279 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 279 (342)
+..++.+|.-+.....|+++..-.++++.+
T Consensus 78 A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 78 AHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 455566665555555566666665555543
No 296
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.15 E-value=0.0048 Score=35.58 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q psy3701 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI 293 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 293 (342)
+.++.+|..+.++|+|++|..+.+.++++.|++..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3567899999999999999999999999999998776554443
No 297
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.11 E-value=0.011 Score=38.67 Aligned_cols=60 Identities=20% Similarity=0.101 Sum_probs=34.4
Q ss_pred HHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc--HHHHHHhhhHHHhhccHH
Q psy3701 70 LVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF--LPAWLMYGHSFAVENEHD 129 (342)
Q Consensus 70 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~ 129 (342)
.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++...|.-+
T Consensus 14 ~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 14 ALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 356677777777777777777777777777777777666554 344444444555555433
No 298
>KOG3824|consensus
Probab=97.09 E-value=0.0025 Score=50.79 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhh
Q psy3701 61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGH 120 (342)
Q Consensus 61 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 120 (342)
++|..+++.++...|.+++++..+|......++.-+|-.+|-+|+.++|.+.+++.+.++
T Consensus 133 ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 133 EKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 333333333457777777777777777777777777777777777777777777666554
No 299
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.07 E-value=0.0013 Score=33.34 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701 286 TFCCIGYIQALTGDLDSAVNYFHKTMALKR 315 (342)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 315 (342)
++..+|.++..+|++++|..+++++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555555544
No 300
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.02 E-value=0.017 Score=49.13 Aligned_cols=126 Identities=13% Similarity=-0.109 Sum_probs=103.2
Q ss_pred HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHH
Q psy3701 89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKF 168 (342)
Q Consensus 89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 168 (342)
+..|+.-.|-+-...++...|.+|......+.+....|+|+.+...+..+-..-.....+...+-.....+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45677888888888888889999988888999999999999999988776665555555666666778888999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701 169 FDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214 (342)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 214 (342)
-.-.+...-+++++...-+.....+|-++++...+++.+.++|...
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 8888887777787776666677788889999999999999988764
No 301
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.00 E-value=0.28 Score=45.13 Aligned_cols=256 Identities=16% Similarity=0.141 Sum_probs=148.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCC----------------cHH
Q psy3701 19 FFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELV-D--LYPD----------------SAI 79 (342)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~-~--~~p~----------------~~~ 79 (342)
.+.|++ ..+...-+++.-|-.....+..++|.+++.+++ ...++.. . ..|. ...
T Consensus 290 ~f~wl~--~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l-----~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~ 362 (608)
T PF10345_consen 290 VFSWLP--KEELYALVYFLSGLHNLYKGSMDKSEKFLEKAL-----KQIEKLKIKSPSAPSESLSEASERIQWLRYLQCY 362 (608)
T ss_pred EEeecC--HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHH-----HHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHH
Confidence 444544 345566677778888888888889999988875 3333333 1 1111 122
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhhcC---CC------cHHHHHHhhhHHHhhccHHHHHHHHH--------HHhccC
Q psy3701 80 AWYAVGCYYYLIGRSDPARRFLGKATSLD---KL------FLPAWLMYGHSFAVENEHDQAMAAYF--------NAFNLF 142 (342)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~------~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~ 142 (342)
..+..+.+.+-.+++..|....+.+.... |. .+..++..|..+...|+.+.|...|. .+....
T Consensus 363 ~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~ 442 (608)
T PF10345_consen 363 LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKS 442 (608)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCC
Confidence 44566778888999999999888776542 22 36678899999999999999999998 333444
Q ss_pred CCCc---hHHHHHHHHHhhhCCHHH----HHHHHHHHHhhCCCChHHHHHHHHHHH-------HhcChhHHHHHHHHHHH
Q psy3701 143 KGCH---LPALYVGLECGLTNNARL----ASKFFDLALSIAHEDPFVIHEMGVIAY-------QNHNYTVAENCFMEALS 208 (342)
Q Consensus 143 ~~~~---~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~A~~~~~~al~ 208 (342)
+.+. .+..++..++...+.-.. ..+.+++.-....+.+...+..+.... ..-...++...+.++++
T Consensus 443 ~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~ 522 (608)
T PF10345_consen 443 KFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALK 522 (608)
T ss_pred cchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHH
Confidence 4322 223345555555544333 344444332222122222222222211 12233467777777776
Q ss_pred hh-hhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc---h
Q psy3701 209 KV-KQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK---A 284 (342)
Q Consensus 209 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~ 284 (342)
.. .... ......-++..++..+. .|+..+.......+....... .
T Consensus 523 ~~~~~~~------------------------------n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~ 571 (608)
T PF10345_consen 523 MANNKLG------------------------------NSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYS 571 (608)
T ss_pred HHHHhhc------------------------------cchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 65 2111 11112335555666666 677777666666666544332 3
Q ss_pred -HHHH-----HHHHHHHHhCChHHHHHHHHHHHh
Q psy3701 285 -STFC-----CIGYIQALTGDLDSAVNYFHKTMA 312 (342)
Q Consensus 285 -~~~~-----~l~~~~~~~g~~~~A~~~~~~al~ 312 (342)
..|. .+...+...|+.++|.....+.-.
T Consensus 572 ~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 572 DQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3332 355567788999999988777644
No 302
>KOG2396|consensus
Probab=96.96 E-value=0.018 Score=49.27 Aligned_cols=93 Identities=6% Similarity=-0.002 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhcc-HHHHHHHHHHH
Q psy3701 60 LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE-HDQAMAAYFNA 138 (342)
Q Consensus 60 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a 138 (342)
......+|+.+....+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...+.++
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 45667777777777777888888777777777777888888888888888888888777765555554 77788888888
Q ss_pred hccCCCCchHHHHH
Q psy3701 139 FNLFKGCHLPALYV 152 (342)
Q Consensus 139 l~~~~~~~~~~~~l 152 (342)
++.+|+++..|...
T Consensus 167 LR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEY 180 (568)
T ss_pred hhcCCCChHHHHHH
Confidence 88888877766543
No 303
>KOG3783|consensus
Probab=96.93 E-value=0.24 Score=43.18 Aligned_cols=238 Identities=12% Similarity=-0.027 Sum_probs=134.2
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH----HHHHHhhhHHHhhccHHHHHHHHHHHhcc
Q psy3701 66 LAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL----PAWLMYGHSFAVENEHDQAMAAYFNAFNL 141 (342)
Q Consensus 66 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 141 (342)
.........|+++.-....+..+...|+.+.|+..++..+. +..- -.++.+|.++..+.+|.+|-..+......
T Consensus 255 ~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~de 332 (546)
T KOG3783|consen 255 ALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDE 332 (546)
T ss_pred HhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 33344566788888788888888888888888888888777 3322 23566788888888888888888888777
Q ss_pred CCCCchHHHHHH-HHHhh--------hCCHHHHHHHHHHHH---hhCCCChHH---HHHHHHHHHHhcChhHHHHHHHHH
Q psy3701 142 FKGCHLPALYVG-LECGL--------TNNARLASKFFDLAL---SIAHEDPFV---IHEMGVIAYQNHNYTVAENCFMEA 206 (342)
Q Consensus 142 ~~~~~~~~~~l~-~~~~~--------~~~~~~A~~~~~~~~---~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~a 206 (342)
..-+...+.+++ -++.. .|+-++|..+++... ...|.+..+ ....+.-+...+.
T Consensus 333 sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~----------- 401 (546)
T KOG3783|consen 333 SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP----------- 401 (546)
T ss_pred hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-----------
Confidence 665554555544 33322 234444444333322 222222111 0111111111110
Q ss_pred HHhhhhcCccccccchhhHHHHhhhhHHHHHH----Hhch--hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701 207 LSKVKQLGGEIIADKWEPLLNNLGHKAEDKVK----QLGG--EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 280 (342)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 280 (342)
.++...-..+..-....++...+....... .... ....++..--+..+|.++..+|+...|..+|..+++..
T Consensus 402 --~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e 479 (546)
T KOG3783|consen 402 --LNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKE 479 (546)
T ss_pred --ccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 000000000000011111111111111111 1111 11233334456678999999999999999999888431
Q ss_pred ---CC----chHHHHHHHHHHHHhCC-hHHHHHHHHHHHhcccCch
Q psy3701 281 ---PM----KASTFCCIGYIQALTGD-LDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 281 ---~~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~ 318 (342)
.. .|.+++.+|..+..+|. ..++..++.+|-+...++.
T Consensus 480 ~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 480 SKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 11 25789999999999999 9999999999998875544
No 304
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.92 E-value=0.061 Score=36.58 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=58.4
Q ss_pred hCCHHHHHHHHHHHHhhCCC------------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHH
Q psy3701 159 TNNARLASKFFDLALSIAHE------------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLL 226 (342)
Q Consensus 159 ~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 226 (342)
.|-+++|...++++...... +..++-.++..+..+|+|++++...++++....... ++ .
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG-EL--------~ 92 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG-EL--------H 92 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH---T--------T
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc-cc--------c
Confidence 34555555555555543321 234566788888899999998888888877543331 00 0
Q ss_pred HHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701 227 NNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 279 (342)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 279 (342)
.. ....|..+.++.+..+...|+.++|+..|+.+-++
T Consensus 93 qd----------------eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QD----------------EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp ST----------------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cc----------------cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 00 00012456677888889999999999999888654
No 305
>KOG2041|consensus
Probab=96.91 E-value=0.14 Score=45.95 Aligned_cols=162 Identities=13% Similarity=-0.051 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701 28 SEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL 107 (342)
Q Consensus 28 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 107 (342)
+.+....|..+++.....-.++.|...|-+.-.-..+++..++-...... ...+.+-.--|++++|.+.|-.+-+.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~----~q~aei~~~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKE----QQRAEISAFYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHH----HHhHhHhhhhcchhHhhhhhhccchh
Confidence 34556778888888887777888877776642211122222221111111 11222333335555555555332111
Q ss_pred -------------------------CC---CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh
Q psy3701 108 -------------------------DK---LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT 159 (342)
Q Consensus 108 -------------------------~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 159 (342)
+. ....++..+|..+..+..+++|.++|.+.-.. -....+++..
T Consensus 764 DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~l 835 (1189)
T KOG2041|consen 764 DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRL 835 (1189)
T ss_pred hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHH
Confidence 01 11346667777777777777777776654221 1234455555
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHH
Q psy3701 160 NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFME 205 (342)
Q Consensus 160 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 205 (342)
.++++-. .....-|++...+-.+|..+...|--++|++.|-+
T Consensus 836 e~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 836 ELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 5555433 22334577777788888888888888888877754
No 306
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.91 E-value=0.0026 Score=32.13 Aligned_cols=32 Identities=44% Similarity=0.633 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Q psy3701 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 282 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 282 (342)
.++..+|.++...|++++|+..++++++..|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46789999999999999999999999998875
No 307
>PRK10941 hypothetical protein; Provisional
Probab=96.90 E-value=0.011 Score=47.51 Aligned_cols=75 Identities=13% Similarity=-0.002 Sum_probs=54.2
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy3701 115 WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI 189 (342)
Q Consensus 115 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 189 (342)
..++-.++...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+-.....+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 445566777777777777777777777777777777777777777777777777777777777777665444333
No 308
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.89 E-value=0.0018 Score=49.34 Aligned_cols=62 Identities=24% Similarity=0.308 Sum_probs=57.1
Q ss_pred HHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhH
Q psy3701 259 VNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320 (342)
Q Consensus 259 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 320 (342)
...+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|++...
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 45567899999999999999999999999999999999999999999999999999987643
No 309
>KOG2396|consensus
Probab=96.88 E-value=0.021 Score=48.84 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC-hHHHHHHHHHHhhcCCCcHHHHHHhhh
Q psy3701 60 LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR-SDPARRFLGKATSLDKLFLPAWLMYGH 120 (342)
Q Consensus 60 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~ 120 (342)
..+.-.++.+++..+|++++.|..-|...+..+. .+.|...|.++++.+|+++..|...-+
T Consensus 121 ~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 121 YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred hhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 4567788889999999999999999988888876 888999999999999999988765443
No 310
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.83 E-value=0.027 Score=43.70 Aligned_cols=69 Identities=26% Similarity=0.370 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHhhhHH-------HHHHHHHHHHhhCCC------chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701 250 EPLLNNLGHVNRKLKKYE-------EALEFHKQALVVAPM------KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~-------~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 316 (342)
+.++..+|++|...|+.+ .|...|+++++.... ...+.+.+|.+..+.|++++|..+|.+++.....
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 578888999999888854 566666666654322 2467888999999999999999999999986443
Q ss_pred ch
Q psy3701 317 DS 318 (342)
Q Consensus 317 ~~ 318 (342)
+.
T Consensus 198 s~ 199 (214)
T PF09986_consen 198 SK 199 (214)
T ss_pred CC
Confidence 33
No 311
>KOG0890|consensus
Probab=96.83 E-value=0.72 Score=47.60 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV 259 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (342)
...|...|++....|+++.|..++-+|.+.. .+.+....|..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------------------------------------~~~i~~E~AK~ 1711 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--------------------------------------LPEIVLERAKL 1711 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------------------------------------cchHHHHHHHH
Confidence 4456666666666666666666665555443 14688999999
Q ss_pred HHHhhhHHHHHHHHHHHHhhC-CC----------c------hHHHHHHHHHHHHhCCh--HHHHHHHHHHHhcccCchhH
Q psy3701 260 NRKLKKYEEALEFHKQALVVA-PM----------K------ASTFCCIGYIQALTGDL--DSAVNYFHKTMALKRDDSFA 320 (342)
Q Consensus 260 ~~~~g~~~~A~~~~~~al~~~-~~----------~------~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p~~~~~ 320 (342)
+...|+-..|+..+++.++.+ |+ . ..+...++......|++ .+-+++|+.+.++.|.....
T Consensus 1712 lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~ 1791 (2382)
T KOG0890|consen 1712 LWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDK 1791 (2382)
T ss_pred HHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCc
Confidence 999999999999999999754 22 1 12334444555556664 45678999999999998888
Q ss_pred HhHHHHHHHHhhhc
Q psy3701 321 TTMLSYVIEQLIEE 334 (342)
Q Consensus 321 ~~~l~~~~~~~~~~ 334 (342)
++.++.-+.++.++
T Consensus 1792 hy~l~~yy~kll~~ 1805 (2382)
T KOG0890|consen 1792 HYHLGKYYDKLLED 1805 (2382)
T ss_pred eeeHHHHHHHHhhh
Confidence 88888776666544
No 312
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.82 E-value=0.021 Score=40.67 Aligned_cols=73 Identities=14% Similarity=-0.011 Sum_probs=40.6
Q ss_pred hhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcCh
Q psy3701 124 VENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY 196 (342)
Q Consensus 124 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (342)
..++++++...+...--+.|+.+..-..-|.++...|++.+|+..++......+..+...-.++.|+..+|+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 3555555555555555555555555555555555555566655555555555555455555555555555543
No 313
>KOG4814|consensus
Probab=96.81 E-value=0.024 Score=50.02 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
+.+-|.-+++..+|..+++.|...+..-|.+. .+...+....+++.||..
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~------------------------------~~~~FaK~qR~l~~CYL~ 406 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN------------------------------YSDRFAKIQRALQVCYLK 406 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchh------------------------------hhhHHHHHHHHHHHHHhh
Confidence 34556677888999999999999998888774 223335678889999999
Q ss_pred hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701 263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 314 (342)
+.+.+.|.+++++|-+.+|.++-....+-.+....|.-++|+.+........
T Consensus 407 L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 407 LEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 9999999999999999999999888888888999999999999988776543
No 314
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.78 E-value=0.086 Score=35.90 Aligned_cols=101 Identities=16% Similarity=0.101 Sum_probs=68.2
Q ss_pred HHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHH
Q psy3701 189 IAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEE 268 (342)
Q Consensus 189 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 268 (342)
-....|-|++|...++++++.....|.+-... .....+-.+..|+.++..+|+|++
T Consensus 18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFD------------------------h~GFDA~chA~Ls~A~~~Lgry~e 73 (144)
T PF12968_consen 18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFD------------------------HDGFDAFCHAGLSGALAGLGRYDE 73 (144)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---------------------------HHHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccCChHhhcc------------------------cccHHHHHHHHHHHHHHhhccHHH
Confidence 34556889999999999999887664110000 000013466778889999999998
Q ss_pred HHHHHHHHHh-------hCCCchH----HHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 269 ALEFHKQALV-------VAPMKAS----TFCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 269 A~~~~~~al~-------~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
++..-++++. ++.+... +.++.+..+..+|+.++|+..|+.+-+.
T Consensus 74 ~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 74 CLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 8877777764 4455444 3467888899999999999999988664
No 315
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.15 Score=44.77 Aligned_cols=83 Identities=13% Similarity=-0.043 Sum_probs=41.5
Q ss_pred HHHHHHHHhccCCCCchHHHH--HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHH-HH
Q psy3701 131 AMAAYFNAFNLFKGCHLPALY--VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFME-AL 207 (342)
Q Consensus 131 A~~~~~~al~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al 207 (342)
++..+...+.++|.++..... +...+...+....+.-.....+..+|.+..+..+++......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444454455555554444322 244444455555555555556666666666666655555554444444333333 44
Q ss_pred Hhhhhc
Q psy3701 208 SKVKQL 213 (342)
Q Consensus 208 ~~~~~~ 213 (342)
...|.+
T Consensus 130 ~~~~~~ 135 (620)
T COG3914 130 WLSPDN 135 (620)
T ss_pred hcCcch
Confidence 444444
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.73 E-value=0.022 Score=40.53 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
+..+...-...++.+++...+...--+.|+.+.....-|.++...|+|.+|+..++...+-.|..+....+++.|+...+
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33344444456677777777766666677777777777777777777777777777777766666766777777766544
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.72 E-value=0.48 Score=43.65 Aligned_cols=273 Identities=15% Similarity=0.041 Sum_probs=145.5
Q ss_pred hhhhHHHHHHHHHHhHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChHHHHH
Q psy3701 25 QLQSEMKSALLLLKGRVYE-ALENRALAADCYKGALLADLFKLAHELVDLYPDS----AIAWYAVGCYYYLIGRSDPARR 99 (342)
Q Consensus 25 ~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~ 99 (342)
++++..++.+.+.+|.++. ...+++.|..++.++. .+...++- ..+-+.++.++.+.+... |..
T Consensus 52 ~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~----------~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~ 120 (608)
T PF10345_consen 52 KLSPRQEARVRLRLASILLEETENLDLAETYLEKAI----------LLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALK 120 (608)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HhccccchHHHHHHHHHHHHHHHHhcCHHH-HHH
Confidence 5567788889999999887 7899999999999985 22222322 223445566766666655 777
Q ss_pred HHHHHhhcCCC---cHHH-HHHh--hhHHHhhccHHHHHHHHHHHhccCC--CCchHHH----HHHHHHhhhCCHHHHHH
Q psy3701 100 FLGKATSLDKL---FLPA-WLMY--GHSFAVENEHDQAMAAYFNAFNLFK--GCHLPAL----YVGLECGLTNNARLASK 167 (342)
Q Consensus 100 ~~~~a~~~~~~---~~~~-~~~l--a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~----~l~~~~~~~~~~~~A~~ 167 (342)
.+++.++.... .... .+.+ .......+++..|++.++....... +++.+.. ..+.+....+..+++++
T Consensus 121 ~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~ 200 (608)
T PF10345_consen 121 NLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLE 200 (608)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 77777765433 1111 1111 2222223677777777777776652 3332222 23445555666666666
Q ss_pred HHHHHHhhCC------C----ChHHHHHHHH--HHHHhcChhHHHHHHHH---HHHhhhhcC--------ccc-------
Q psy3701 168 FFDLALSIAH------E----DPFVIHEMGV--IAYQNHNYTVAENCFME---ALSKVKQLG--------GEI------- 217 (342)
Q Consensus 168 ~~~~~~~~~~------~----~~~~~~~l~~--~~~~~~~~~~A~~~~~~---al~~~~~~~--------~~~------- 217 (342)
.++++..... + ...+|..+-. +....|+++.+...+++ .++...+.+ +.+
T Consensus 201 ~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~ 280 (608)
T PF10345_consen 201 LLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEG 280 (608)
T ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccc
Confidence 6666533211 1 1223333332 23344554444433322 222211110 000
Q ss_pred -------------------cccchh-hHHH--------HhhhhHHHHHHHhchhc----cCCC----------------C
Q psy3701 218 -------------------IADKWE-PLLN--------NLGHKAEDKVKQLGGEI----IADK----------------W 249 (342)
Q Consensus 218 -------------------~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~----~~~~----------------~ 249 (342)
....+. .... ....+.++.+...+... ..+. .
T Consensus 281 ~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~ 360 (608)
T PF10345_consen 281 SSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQ 360 (608)
T ss_pred cccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHH
Confidence 000001 0000 01111222222222211 0000 1
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC---CC------chHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA---PM------KASTFCCIGYIQALTGDLDSAVNYFH 308 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 308 (342)
.......+.+..-.+++..|....+.+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 361 ~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 361 CYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 2244456667778899999998888777543 22 36678889999999999999999998
No 318
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.56 E-value=0.097 Score=39.41 Aligned_cols=65 Identities=14% Similarity=0.002 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccC
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLF 142 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 142 (342)
..++..+|..|.+.|+.++|++.|.++.+..... .+.+..+..+....+++........++-...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4677888888999999999999888877654332 4566777777788888888888777776553
No 319
>KOG1839|consensus
Probab=96.54 E-value=0.077 Score=50.97 Aligned_cols=173 Identities=15% Similarity=0.032 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHhCChHHHHH------HHH-HHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC--------C
Q psy3701 79 IAWYAVGCYYYLIGRSDPARR------FLG-KATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--------K 143 (342)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~------~~~-~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~ 143 (342)
.-....|......|.+.+|.+ .+. ..-.+.|.....+..++.++...|+.++|+..-.++.-+. |
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 344556666677777777777 554 3334578888899999999999999999999988876553 3
Q ss_pred CCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCc
Q psy3701 144 GCHLPALYVGLECGLTNNARLASKFFDLALSI--------AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG 215 (342)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 215 (342)
+....+..++......++...|...+.++..+ .|.-.....+++.++...++++.|+.+.+.|...+....
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~- 1091 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL- 1091 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc-
Confidence 44566777888888888999999998888764 344455667888899999999999999999998655442
Q ss_pred cccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701 216 EIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 279 (342)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 279 (342)
....-.....+..++..+..++++..|+...+....+
T Consensus 1092 ---------------------------g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1092 ---------------------------GPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred ---------------------------CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 0011223456677788888888888887777666543
No 320
>KOG3364|consensus
Probab=96.51 E-value=0.12 Score=36.16 Aligned_cols=77 Identities=12% Similarity=0.092 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHHhc---ChhHHHHHHHHHHH-hhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHH
Q psy3701 179 DPFVIHEMGVIAYQNH---NYTVAENCFMEALS-KVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN 254 (342)
Q Consensus 179 ~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (342)
.....++++.++.... +..+.+.+++..++ -.|... -+..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~r-----------------------------------Re~ly 75 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERR-----------------------------------RECLY 75 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccc-----------------------------------hhhhh
Confidence 3455677777777654 44567888888876 333332 45677
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHH
Q psy3701 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 290 (342)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 290 (342)
.++..+.+.|+|++++.+.+..++..|++..+....
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 788888999999999999999999999887765443
No 321
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.49 E-value=0.036 Score=47.36 Aligned_cols=123 Identities=16% Similarity=0.098 Sum_probs=74.6
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHH
Q psy3701 157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK 236 (342)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
...|+.-.|-+-+..++...|.+|......+.+...+|+|+.+...+.-+-..-....
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~---------------------- 357 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD---------------------- 357 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc----------------------
Confidence 4457888888888888888899998888889999999999988877765544332221
Q ss_pred HHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701 237 VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR 315 (342)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 315 (342)
.+...+-.....+|++++|...-+-.+...-+++++...-+.....+|-++++..++++.+.++|
T Consensus 358 --------------~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 358 --------------STLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred --------------hHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 22222333344455555555555554444444444443334444444555555555555555544
No 322
>KOG2422|consensus
Probab=96.47 E-value=0.26 Score=43.35 Aligned_cols=116 Identities=15% Similarity=0.081 Sum_probs=80.4
Q ss_pred hCChHHHHHHHHHHhhc------------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc-----------------
Q psy3701 91 IGRSDPARRFLGKATSL------------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL----------------- 141 (342)
Q Consensus 91 ~~~~~~A~~~~~~a~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------- 141 (342)
...|++|...|.-+... .|.+.+.+..++.+...+|+.+-|....++++=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34578888888777653 4666788999999999999998888877777632
Q ss_pred ----CCCCchH---HHHHHHHHhhhCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHH-HHhcChhHHHHHHHHH
Q psy3701 142 ----FKGCHLP---ALYVGLECGLTNNARLASKFFDLALSIAHE-DPFVIHEMGVIA-YQNHNYTVAENCFMEA 206 (342)
Q Consensus 142 ----~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~~~~~~A~~~~~~a 206 (342)
.|.+... .+..-..+.+.|-+..|.++++-.+.++|. +|.....+..+| .+..+|+=-+..++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1222211 122333456679999999999999999998 777665555554 3456676666666554
No 323
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.47 E-value=0.22 Score=36.64 Aligned_cols=144 Identities=13% Similarity=0.043 Sum_probs=87.9
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCCh--HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701 157 GLTNNARLASKFFDLALSIAHEDP--FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE 234 (342)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (342)
...+..++|+..|...-+..-... -+....+.+....|+...|+..|..+-...|...
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~-------------------- 128 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ-------------------- 128 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc--------------------
Confidence 344666777777776665443332 3455667777888888888888887765544331
Q ss_pred HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH-hhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL-VVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
.....+...-+.++...|-|++-..-.+..- ..+|-...+.-.||..-++.|++.+|..+|.+...
T Consensus 129 ------------~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~- 195 (221)
T COG4649 129 ------------IGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN- 195 (221)
T ss_pred ------------hhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-
Confidence 0001244455666777788877655544322 12333445667788888888888888888888776
Q ss_pred ccCchhHHhHHHHHHHHhhh
Q psy3701 314 KRDDSFATTMLSYVIEQLIE 333 (342)
Q Consensus 314 ~p~~~~~~~~l~~~~~~~~~ 333 (342)
+..-|.....-+.+..++..
T Consensus 196 Da~aprnirqRAq~mldlI~ 215 (221)
T COG4649 196 DAQAPRNIRQRAQIMLDLID 215 (221)
T ss_pred cccCcHHHHHHHHHHHHHHh
Confidence 44444444444555544443
No 324
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.37 E-value=0.46 Score=41.56 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=58.4
Q ss_pred HHhCChHHHHHHHHHHhhcCCCc-HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHH
Q psy3701 89 YLIGRSDPARRFLGKATSLDKLF-LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASK 167 (342)
Q Consensus 89 ~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 167 (342)
...++++++.+..... ++-|.- ..-...++..+...|..+.|+... .++...+.+ ..+.|+.+.|.+
T Consensus 272 v~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHHHHH
Confidence 3467777766665411 122222 233555666777788888877752 233344443 356778888776
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHH
Q psy3701 168 FFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEA 206 (342)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 206 (342)
..++ .+++..|..+|.....+|+++-|..+|+++
T Consensus 340 ~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 340 IAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 5433 346778889999999999998888888874
No 325
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.33 E-value=0.008 Score=45.92 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=50.4
Q ss_pred HHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc
Q psy3701 87 YYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH 146 (342)
Q Consensus 87 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 146 (342)
.....++.+.|.+.+.+++.+.|+....|+.+|......|+++.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345677888888888888888888888888888888888888888888888888888754
No 326
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.33 E-value=0.21 Score=38.82 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHhCChHHHHHH
Q psy3701 27 QSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYP------DSAIAWYAVGCYYYLIGRSDPARRF 100 (342)
Q Consensus 27 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~ 100 (342)
.....+.++..++.+|...|+-+.....+++| ...+.++..... +.....+.+|....+.|++++|.++
T Consensus 113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~A-----l~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~ 187 (214)
T PF09986_consen 113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKA-----LEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRW 187 (214)
T ss_pred CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH-----HHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44456777777899999988866666666654 355555554332 2356788899999999999999999
Q ss_pred HHHHhhcCCC
Q psy3701 101 LGKATSLDKL 110 (342)
Q Consensus 101 ~~~a~~~~~~ 110 (342)
|.+++.....
T Consensus 188 fs~vi~~~~~ 197 (214)
T PF09986_consen 188 FSRVIGSKKA 197 (214)
T ss_pred HHHHHcCCCC
Confidence 9998876443
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.29 E-value=0.011 Score=32.08 Aligned_cols=29 Identities=45% Similarity=0.634 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701 251 PLLNNLGHVNRKLKKYEEALEFHKQALVV 279 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 279 (342)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45666777777777777777777766654
No 328
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.38 Score=42.43 Aligned_cols=118 Identities=14% Similarity=-0.045 Sum_probs=85.3
Q ss_pred hcCCCcHHHHHH--HHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHH-HhccCCCCchH
Q psy3701 72 DLYPDSAIAWYA--VGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFN-AFNLFKGCHLP 148 (342)
Q Consensus 72 ~~~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~ 148 (342)
..+|.++..+.. +...+...++...+.-.+..++..+|++..+..+++......|....+...+.. +....|.+...
T Consensus 59 ~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~ 138 (620)
T COG3914 59 AINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEF 138 (620)
T ss_pred ccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHH
Confidence 456666665433 466667777877888888888888888888888888887777776666655555 77777777666
Q ss_pred HHHH------HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy3701 149 ALYV------GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI 189 (342)
Q Consensus 149 ~~~l------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 189 (342)
...+ +.....+|+..++.....++....|.++.+...+...
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 139 LGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 5554 7777777888888888888888888876654444333
No 329
>KOG3783|consensus
Probab=96.26 E-value=0.46 Score=41.51 Aligned_cols=206 Identities=13% Similarity=0.016 Sum_probs=118.3
Q ss_pred HHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH
Q psy3701 35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA 114 (342)
Q Consensus 35 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 114 (342)
.+..++.+...|+.+.|+..++.+.. .....-....++.+|.++..+.+|..|...+......+.-....
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~----------~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~ 339 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIP----------IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAF 339 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhccc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHH
Confidence 33467777777887777777777531 00001124456788888888999999999998887776544444
Q ss_pred HHHhh-hHHHh--------hccHHHHHHHHHHHh---cc----CCCC--------------------chH--HHHHHHHH
Q psy3701 115 WLMYG-HSFAV--------ENEHDQAMAAYFNAF---NL----FKGC--------------------HLP--ALYVGLEC 156 (342)
Q Consensus 115 ~~~la-~~~~~--------~g~~~~A~~~~~~al---~~----~~~~--------------------~~~--~~~l~~~~ 156 (342)
|..++ -|+.. .|+-+.|..+.+... .. .|-. ..+ ++.+ +|
T Consensus 340 Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El--~Y 417 (546)
T KOG3783|consen 340 YTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYEL--AY 417 (546)
T ss_pred HHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHH--HH
Confidence 44333 33322 234444333333222 11 1110 001 1111 12
Q ss_pred hhhC----CHHHHHHHHHHHH---hh-CCCCh-HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHH
Q psy3701 157 GLTN----NARLASKFFDLAL---SI-AHEDP-FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN 227 (342)
Q Consensus 157 ~~~~----~~~~A~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 227 (342)
.-.| ..++.. -++... .. ++++. -....+|.++..+|+...|..+|...++......
T Consensus 418 ~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~------------- 483 (546)
T KOG3783|consen 418 FWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRT------------- 483 (546)
T ss_pred HHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc-------------
Confidence 2111 111222 111111 11 22222 2356789999999999999999998886532221
Q ss_pred HhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhCCC
Q psy3701 228 NLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVVAPM 282 (342)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~ 282 (342)
....-.+-+++.+|..+..+|. ..++..++.+|-....+
T Consensus 484 ----------------~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 484 ----------------EDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred ----------------cccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 1233346799999999999998 99999999999876643
No 330
>KOG1839|consensus
Probab=96.25 E-value=0.099 Score=50.27 Aligned_cols=176 Identities=13% Similarity=0.036 Sum_probs=127.0
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc--
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAH-ELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL-- 107 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~-~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 107 (342)
.+......|+.....|.+.+|.+ ..++ +.++. ..-..+|+.+..+..++..+...++.++|+..-.++.-+
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~s-----lnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~e 1004 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYE-LPES-----LNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISE 1004 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhh-hhhh-----hhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeec
Confidence 34444556777777777777766 2222 22333 234568999999999999999999999999998887654
Q ss_pred ------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc--------CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHH
Q psy3701 108 ------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL--------FKGCHLPALYVGLECGLTNNARLASKFFDLAL 173 (342)
Q Consensus 108 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 173 (342)
.|+....+..++......++...|+..+.++..+ .|........++.++...++++.|+++.+.+.
T Consensus 1005 R~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~ 1084 (1236)
T KOG1839|consen 1005 RVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESAL 1084 (1236)
T ss_pred hhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2445567888888888888888999988888765 24444455668888888899999999999998
Q ss_pred hhCCC--------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhh
Q psy3701 174 SIAHE--------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212 (342)
Q Consensus 174 ~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 212 (342)
..+.. ....+..++.++...+++..|+...+....+.+.
T Consensus 1085 a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1085 AKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred HHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Confidence 85421 2345666777777777777777777666655443
No 331
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.24 E-value=0.019 Score=46.03 Aligned_cols=86 Identities=13% Similarity=0.031 Sum_probs=63.7
Q ss_pred HHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHH-HHHHHhhhCCHHHHHHHHHHHHhhCCCC
Q psy3701 101 LGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY-VGLECGLTNNARLASKFFDLALSIAHED 179 (342)
Q Consensus 101 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 179 (342)
|.++....|.++..|...+......|.+.+--..|.++++..|.+.+.|.. -+.-+...++.+.+...|.++++.+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 444555567777777777777777777778788888888888888777776 4455667778888888888888888888
Q ss_pred hHHHHHH
Q psy3701 180 PFVIHEM 186 (342)
Q Consensus 180 ~~~~~~l 186 (342)
|.+|...
T Consensus 176 p~iw~ey 182 (435)
T COG5191 176 PRIWIEY 182 (435)
T ss_pred chHHHHH
Confidence 8776543
No 332
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.22 E-value=0.089 Score=39.60 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhh
Q psy3701 148 PALYVGLECGLTNNARLASKFFDLALSIAHED---PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEP 224 (342)
Q Consensus 148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 224 (342)
++..+|..|.+.|+.++|++.|.++....... .+.+..+..+.+..+++.....+..++-..-.... . |
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~-d-----~-- 109 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG-D-----W-- 109 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc-h-----H--
Confidence 44456666666666666666666655543222 34566777777788888888888777765543321 0 0
Q ss_pred HHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701 225 LLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 279 (342)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 279 (342)
.........-|..+...++|.+|...|-.+...
T Consensus 110 ----------------------~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 110 ----------------------ERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred ----------------------HHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 000123344566667778888888887766543
No 333
>KOG1538|consensus
Probab=96.19 E-value=0.9 Score=40.82 Aligned_cols=69 Identities=10% Similarity=-0.006 Sum_probs=39.3
Q ss_pred HHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701 35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLY--PDSAIAWYAVGCYYYLIGRSDPARRFLGKA 104 (342)
Q Consensus 35 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 104 (342)
|..++......=+++-|.+.|.+...-.-+.+.-++-+.. ...|. -..++..+.-.|++.+|.+.|.+.
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHc
Confidence 3445555555556777777777665433333333332221 11122 245677778888888888888763
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.38 Score=35.43 Aligned_cols=136 Identities=14% Similarity=0.056 Sum_probs=83.6
Q ss_pred hhccHHHHHHHHHHHhccCCCCc--hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHhcChh
Q psy3701 124 VENEHDQAMAAYFNAFNLFKGCH--LPALYVGLECGLTNNARLASKFFDLALSIAHED----PFVIHEMGVIAYQNHNYT 197 (342)
Q Consensus 124 ~~g~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 197 (342)
..|..++|+..|...-+..-... .+.+..+.+....|+...|+..|.++-...|.. ..+...-+.++...|.|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 45667777777777666544332 344556777888888888888888876554321 122344566677778887
Q ss_pred HHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy3701 198 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 277 (342)
Q Consensus 198 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 277 (342)
+.....+..-. +. +|....+.-.||..-.+.|++.+|...|....
T Consensus 150 dV~srvepLa~--d~---------------------------------n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 150 DVSSRVEPLAG--DG---------------------------------NPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHhhhccC--CC---------------------------------ChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 76554443211 11 12224566678888888888888888888876
Q ss_pred hhCCCchHHHHHHHHHHH
Q psy3701 278 VVAPMKASTFCCIGYIQA 295 (342)
Q Consensus 278 ~~~~~~~~~~~~l~~~~~ 295 (342)
. +...+....+.+.+..
T Consensus 195 ~-Da~aprnirqRAq~ml 211 (221)
T COG4649 195 N-DAQAPRNIRQRAQIML 211 (221)
T ss_pred c-cccCcHHHHHHHHHHH
Confidence 5 4444444445554443
No 335
>KOG2422|consensus
Probab=96.01 E-value=0.41 Score=42.15 Aligned_cols=141 Identities=13% Similarity=0.013 Sum_probs=100.1
Q ss_pred hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc-----CC----------------CcHH---HHHHhhhHHHhhcc
Q psy3701 72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL-----DK----------------LFLP---AWLMYGHSFAVENE 127 (342)
Q Consensus 72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~----------------~~~~---~~~~la~~~~~~g~ 127 (342)
...|-+.+.+..++.+...+|+.+-|....++++-. .| .+-. +.+..-..+.+.|-
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC 357 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456888999999999999999999888888877521 12 2222 22334455667899
Q ss_pred HHHHHHHHHHHhccCCC-CchHHHHHHHHHh-hhCCHHHHHHHHHHHH-----hhCCCChHHHHHHHHHHHHhcC---hh
Q psy3701 128 HDQAMAAYFNAFNLFKG-CHLPALYVGLECG-LTNNARLASKFFDLAL-----SIAHEDPFVIHEMGVIAYQNHN---YT 197 (342)
Q Consensus 128 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~---~~ 197 (342)
+..|.++++-.+.++|. ++.+...+..+|. +..+|+--++.++..- ...|+-+ .-..++..|..... -+
T Consensus 358 ~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rq 436 (665)
T KOG2422|consen 358 WRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQ 436 (665)
T ss_pred hHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCChhhHH
Confidence 99999999999999998 8877777666654 4567777777777653 2334332 23456666666555 56
Q ss_pred HHHHHHHHHHHhhhhc
Q psy3701 198 VAENCFMEALSKVKQL 213 (342)
Q Consensus 198 ~A~~~~~~al~~~~~~ 213 (342)
.|...+.+|+...|..
T Consensus 437 sa~~~l~qAl~~~P~v 452 (665)
T KOG2422|consen 437 SALNALLQALKHHPLV 452 (665)
T ss_pred HHHHHHHHHHHhCcHH
Confidence 7889999999988854
No 336
>KOG1310|consensus
Probab=96.00 E-value=0.032 Score=48.18 Aligned_cols=90 Identities=16% Similarity=-0.028 Sum_probs=66.9
Q ss_pred hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh---hhHHHH
Q psy3701 193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL---KKYEEA 269 (342)
Q Consensus 193 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A 269 (342)
.+....++..|.+++...|.. ...+.+.+.++++. |+.-.|
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~------------------------------------~~~l~nraa~lmkRkW~~d~~~A 430 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDA------------------------------------IYLLENRAAALMKRKWRGDSYLA 430 (758)
T ss_pred hHHHHHHHHHHHHHhhhccch------------------------------------hHHHHhHHHHHHhhhccccHHHH
Confidence 344566777777777777666 46777777777654 456677
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 270 LEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 270 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
+.-+..+++++|....+|+.|+.++..++++.+|+.+...+....|.+.
T Consensus 431 lrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 431 LRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 7777888888888888888888888888888888888877777777443
No 337
>KOG1310|consensus
Probab=95.94 E-value=0.032 Score=48.18 Aligned_cols=92 Identities=13% Similarity=0.033 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh---CChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHH
Q psy3701 53 DCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLI---GRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHD 129 (342)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 129 (342)
+.|.......++..+.+.+...|.....+.+.+.++.+. |+.-.|+.....+++++|....+|+.|+.++...+++.
T Consensus 383 d~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ 462 (758)
T KOG1310|consen 383 DGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYL 462 (758)
T ss_pred chhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHH
Confidence 334444456666667777777777777776666666654 34555666666677777777777777777777777777
Q ss_pred HHHHHHHHHhccCCC
Q psy3701 130 QAMAAYFNAFNLFKG 144 (342)
Q Consensus 130 ~A~~~~~~al~~~~~ 144 (342)
+|+.+...+....|.
T Consensus 463 eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 463 EALSCHWALQMSFPT 477 (758)
T ss_pred HhhhhHHHHhhcCch
Confidence 777766666666664
No 338
>KOG4814|consensus
Probab=95.92 E-value=0.11 Score=46.02 Aligned_cols=95 Identities=11% Similarity=-0.048 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCc------HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701 81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLF------LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154 (342)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 154 (342)
+.+-|.-.++..+|..++++|...+..-|.+ ......+..||....+.|.|.+++++|-+.+|.++.....+..
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3445677788899999999999998876654 3456778899999999999999999999999999988888888
Q ss_pred HHhhhCCHHHHHHHHHHHHhh
Q psy3701 155 ECGLTNNARLASKFFDLALSI 175 (342)
Q Consensus 155 ~~~~~~~~~~A~~~~~~~~~~ 175 (342)
+....+.-++|+.+.......
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
Confidence 888899999999988877654
No 339
>KOG1464|consensus
Probab=95.91 E-value=0.42 Score=37.92 Aligned_cols=168 Identities=11% Similarity=0.053 Sum_probs=92.2
Q ss_pred hccHHHHHHHHHHHhccCCCCc----hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHH
Q psy3701 125 ENEHDQAMAAYFNAFNLFKGCH----LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAE 200 (342)
Q Consensus 125 ~g~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 200 (342)
..+.++|+..|++++++.+... .++-.+..+.++++++++-.+.|.+.+..-.. ....+--++++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS-----------AVTrNySEKsI 108 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS-----------AVTRNYSEKSI 108 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH-----------HHhccccHHHH
Confidence 3467777777777777766533 23334555666677777777666666542110 00001111122
Q ss_pred HHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701 201 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 280 (342)
Q Consensus 201 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 280 (342)
...-..+... .-+..+...++..+..+.......-|...-..+|.+|+..|+|.+-.+.+++.-...
T Consensus 109 N~IlDyiStS-------------~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 109 NSILDYISTS-------------KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred HHHHHHHhhh-------------hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence 1111111111 111223334444444444444455555666779999999999988777776654432
Q ss_pred CC------------chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701 281 PM------------KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316 (342)
Q Consensus 281 ~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 316 (342)
.. -.+++..-...|..+.+...-...|++++.+...
T Consensus 176 q~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSA 223 (440)
T KOG1464|consen 176 QTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSA 223 (440)
T ss_pred ccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhcc
Confidence 11 1234555566777788888888889999877543
No 340
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.84 E-value=0.023 Score=45.62 Aligned_cols=83 Identities=6% Similarity=0.114 Sum_probs=73.7
Q ss_pred HHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHH-hhhHHHhhccHHHHHHHHHHHhccCCCCchH
Q psy3701 70 LVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLM-YGHSFAVENEHDQAMAAYFNAFNLFKGCHLP 148 (342)
Q Consensus 70 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 148 (342)
.....|+++..|...+..-...+.+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...+.++++.+|.++..
T Consensus 99 ~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 99 STNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred hhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 345678899999999999899999999999999999999999999987 5667888999999999999999999999988
Q ss_pred HHHH
Q psy3701 149 ALYV 152 (342)
Q Consensus 149 ~~~l 152 (342)
|...
T Consensus 179 w~ey 182 (435)
T COG5191 179 WIEY 182 (435)
T ss_pred HHHH
Confidence 7653
No 341
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.84 E-value=0.022 Score=30.92 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 285 STFCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
.++.++|.+|..+|++++|..++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56789999999999999999999999876
No 342
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.1 Score=41.40 Aligned_cols=77 Identities=22% Similarity=0.173 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 326 (342)
.....++=..+...++++.|....++.+..+|.++.-+.-.|.+|.++|.+.-|++.++..++..|+++.+-..-..
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 34556667778899999999999999999999999999999999999999999999999999999999876544333
No 343
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.61 E-value=0.065 Score=35.53 Aligned_cols=65 Identities=25% Similarity=0.309 Sum_probs=45.7
Q ss_pred HHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHH
Q psy3701 190 AYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEA 269 (342)
Q Consensus 190 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 269 (342)
..+.|+|.+|++.+.+.+........... ......+..++|.+....|++++|
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~---------------------------~~~~~~all~lA~~~~~~G~~~~A 60 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSS---------------------------NSGLAYALLNLAELHRRFGHYEEA 60 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchh---------------------------hHHHHHHHHHHHHHHHHhCCHHHH
Confidence 45678999999999998887665520000 001234667788888888888888
Q ss_pred HHHHHHHHhhCC
Q psy3701 270 LEFHKQALVVAP 281 (342)
Q Consensus 270 ~~~~~~al~~~~ 281 (342)
+..+++++++..
T Consensus 61 ~~~l~eAi~~Ar 72 (94)
T PF12862_consen 61 LQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHHHH
Confidence 888888887653
No 344
>KOG3807|consensus
Probab=95.53 E-value=1.1 Score=36.78 Aligned_cols=118 Identities=8% Similarity=0.022 Sum_probs=70.4
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCC
Q psy3701 82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNN 161 (342)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~ 161 (342)
+.+-...++..+..+-++....+++++|+...++..++.-- .--..+|.+.++++++.... .+.........|.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~ 261 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET----IYRQSQQCQHQSP 261 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhcc
Confidence 44445556667777778888888888888888888777532 22355677777777765332 1111111122222
Q ss_pred HHHHHHHHHHHHhhCCCCh--HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhh
Q psy3701 162 ARLASKFFDLALSIAHEDP--FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212 (342)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 212 (342)
..+|. .+. ..+. .+-..++.|..++|+..+|++.++...+..|-
T Consensus 262 ~~da~------~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 262 QHEAQ------LRR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL 307 (556)
T ss_pred chhhh------hhc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence 22221 111 1122 23456788888899999999988887776653
No 345
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.36 E-value=0.32 Score=32.18 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=41.4
Q ss_pred hhhCCHHHHHHHHHHHHhhCCC---------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701 157 GLTNNARLASKFFDLALSIAHE---------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214 (342)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 214 (342)
.+.|++.+|++.+.+.+..... ...+...+|.++...|++++|+..+++++++.....
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 4456666666665555543221 134567789999999999999999999999887763
No 346
>KOG0529|consensus
Probab=95.32 E-value=1.4 Score=37.30 Aligned_cols=178 Identities=12% Similarity=0.067 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701 95 DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALS 174 (342)
Q Consensus 95 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 174 (342)
++++..-.+.+..+|+...+|...-.++...-.. .+..|. .+..-.++-+.+...+++
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~----------~~~~~~------------ek~~~ld~eL~~~~~~L~ 103 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTR----------AQLEPL------------EKQALLDEELKYVESALK 103 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhh----------hcCCHH------------HHHHhhHHHHHHHHHHHH
Confidence 5666777777777887766665433332211110 011111 111234556666677777
Q ss_pred hCCCChHHHHHHHHHHHHhcC--hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHH
Q psy3701 175 IAHEDPFVIHEMGVIAYQNHN--YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPL 252 (342)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (342)
.+|++..+|+....++.+.+. +..=+.+.+++++.+|.+- .+
T Consensus 104 ~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNf------------------------------------h~ 147 (421)
T KOG0529|consen 104 VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNF------------------------------------HA 147 (421)
T ss_pred hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccc------------------------------------cc
Confidence 777777777777777766543 4566777777777777662 23
Q ss_pred HHHHHHHHHHh----hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH------hCC------hHHHHHHHHHHHhcccC
Q psy3701 253 LNNLGHVNRKL----KKYEEALEFHKQALVVAPMKASTFCCIGYIQAL------TGD------LDSAVNYFHKTMALKRD 316 (342)
Q Consensus 253 ~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~------~g~------~~~A~~~~~~al~~~p~ 316 (342)
|...=.+.... ....+=+++..+++..++.+..+|.....++.. .|+ ...-.+.-..++-.+|+
T Consensus 148 W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~ 227 (421)
T KOG0529|consen 148 WHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPE 227 (421)
T ss_pred hHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcc
Confidence 32222222111 123444566666666666666666666555542 221 12233444555666777
Q ss_pred chhHHhHHHHHHHH
Q psy3701 317 DSFATTMLSYVIEQ 330 (342)
Q Consensus 317 ~~~~~~~l~~~~~~ 330 (342)
|..+|..-..++.+
T Consensus 228 DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 228 DQSCWFYHRWLLGR 241 (421)
T ss_pred ccceeeehHHhhcc
Confidence 77666654444443
No 347
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.31 E-value=0.12 Score=42.30 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 269 ALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 269 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
|+.+|.+|+.+.|++...+..+|.+....|+.-.|+-+|-+++....-.+.+..+|..+++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999998765568899999999888
No 348
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.24 E-value=0.17 Score=42.66 Aligned_cols=108 Identities=12% Similarity=0.083 Sum_probs=76.0
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701 186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK 265 (342)
Q Consensus 186 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (342)
-|...+++++|..|..-|..++++..+.. ........ ..++... -..-+-..+..||.++++
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~--a~~k~~~~---~~~di~~-------------vaSfIetklv~CYL~~rk 243 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGA--ALSKPFKA---SAEDISS-------------VASFIETKLVTCYLRMRK 243 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhh--hccCCCCC---ChhhHHH-------------HHHHHHHHHHHhhhhcCC
Confidence 35667788888888888888888765542 00000000 0000000 001244568899999999
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701 266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311 (342)
Q Consensus 266 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 311 (342)
.+-|+....+.+..+|....-+...+.++..+.+|.+|-+.+--+.
T Consensus 244 pdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 244 PDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred CchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987765553
No 349
>KOG0529|consensus
Probab=95.04 E-value=1.9 Score=36.58 Aligned_cols=157 Identities=10% Similarity=0.033 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH------------hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhcc-
Q psy3701 61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYL------------IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE- 127 (342)
Q Consensus 61 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~- 127 (342)
.+++.+-.+++..+|+...+|...=.++.. ..-.++-+.+...++..+|+...+|+....++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 566677777889999988888765443322 2245677788899999999999999999999887664
Q ss_pred -HHHHHHHHHHHhccCCCCchHHHHHHHHHhhh----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH------hcC-
Q psy3701 128 -HDQAMAAYFNAFNLFKGCHLPALYVGLECGLT----NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ------NHN- 195 (342)
Q Consensus 128 -~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~- 195 (342)
+..-+...+++++.+|.+..+|.+.-.+.... ....+=+++..+++..++.+..+|.....++.. .|+
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~ 205 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF 205 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence 68889999999999999988887754443332 345677888999999999999999887766652 231
Q ss_pred -----hhHHHHHHHHHHHhhhhcCccc
Q psy3701 196 -----YTVAENCFMEALSKVKQLGGEI 217 (342)
Q Consensus 196 -----~~~A~~~~~~al~~~~~~~~~~ 217 (342)
...-+..-..++-.+|.+...+
T Consensus 206 ~~~~~l~sEle~v~saiFTdp~DqS~W 232 (421)
T KOG0529|consen 206 MPKELLQSELEMVHSAIFTDPEDQSCW 232 (421)
T ss_pred CCHHHHHHHHHHHHHHHhcCcccccee
Confidence 1233455556666778776333
No 350
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.94 E-value=0.1 Score=27.27 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhCChHHHHHH--HHHHHhccc
Q psy3701 286 TFCCIGYIQALTGDLDSAVNY--FHKTMALKR 315 (342)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~--~~~al~~~p 315 (342)
.++.+|..+..+|++++|+.. |+-+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344555555555555555555 224444444
No 351
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.87 E-value=0.099 Score=27.36 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHH--HHHHhhcCCC
Q psy3701 79 IAWYAVGCYYYLIGRSDPARRF--LGKATSLDKL 110 (342)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~--~~~a~~~~~~ 110 (342)
+.++.+|..+..+|++++|+.. |.-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3456666666667777777766 3355544443
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.70 E-value=2.8 Score=36.84 Aligned_cols=82 Identities=16% Similarity=0.038 Sum_probs=45.0
Q ss_pred cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701 111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA 190 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 190 (342)
++..|..||.....+|+++-|..+|+++-. +-.+..+|...|+.+.-.+..+.+..... ++..-.++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~ 412 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD-----INIAFQAA 412 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHH
Confidence 456777777777777777777777776532 33455556666666555444444433221 11222334
Q ss_pred HHhcChhHHHHHHHH
Q psy3701 191 YQNHNYTVAENCFME 205 (342)
Q Consensus 191 ~~~~~~~~A~~~~~~ 205 (342)
+..|+.++.++.+.+
T Consensus 413 ~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 413 LLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHT-HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 455666666666654
No 353
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.64 E-value=0.062 Score=25.71 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhCChHHHHHHH
Q psy3701 287 FCCIGYIQALTGDLDSAVNYF 307 (342)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~ 307 (342)
...+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 444555555555555555544
No 354
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.58 E-value=2.7 Score=36.24 Aligned_cols=131 Identities=8% Similarity=-0.065 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHH-----HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701 80 AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLP-----AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154 (342)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 154 (342)
.+..-|-++..++++.+|...|.+..+...+.+. .+.++..-..-.++.+.-....-..-+..|..+......|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 4556688888999999999999998776554432 23333333344566777666666667777887788888899
Q ss_pred HHhhhCCHHHHHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhh
Q psy3701 155 ECGLTNNARLASKFFDLALSIAHED---------------PFVIHEMGVIAYQNHNYTVAENCFMEALSKV 210 (342)
Q Consensus 155 ~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 210 (342)
..++.+.+.+|++.+......-.+. ...-...+.++...|++.++...+.+.+..-
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 9999999999999887665442111 1112345788899999999999998887653
No 355
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.51 E-value=0.3 Score=39.42 Aligned_cols=64 Identities=9% Similarity=0.144 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
..++..++..+...|+++.+++.+++.+..+|.+...|..+-..|...|+...|+..|++.-..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4688889999999999999999999999999999999999999999999999999999987663
No 356
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.50 E-value=0.68 Score=39.25 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHH
Q psy3701 81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNA 138 (342)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 138 (342)
--.+..||...++.+-|+....+.+.++|....-+...|.++....+|.+|-..+--+
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999987765443
No 357
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=0.29 Score=39.00 Aligned_cols=70 Identities=11% Similarity=-0.021 Sum_probs=51.2
Q ss_pred HhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701 117 MYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM 186 (342)
Q Consensus 117 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 186 (342)
++=..+...++++.|..+.++.+.++|.++..+.-.|.+|.+.|.+.-|++.+...++..|+++.+-...
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence 3445666777777777777777777777777777777778777877777777777777777776654433
No 358
>KOG2581|consensus
Probab=94.48 E-value=2.7 Score=35.69 Aligned_cols=66 Identities=24% Similarity=0.269 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhh--C--CCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALVV--A--PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD 317 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 317 (342)
..+.+-..|...+.|+.|.....+..-- . ...+...+.+|.+..-+++|..|.++|-+|+...|.+
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 3334445555556666665555443310 0 0122344556666666666666666666666666653
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.47 E-value=0.57 Score=29.42 Aligned_cols=60 Identities=15% Similarity=0.092 Sum_probs=42.3
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH---HHHHHhcChhHHHHHHHHHHHhhh
Q psy3701 152 VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG---VIAYQNHNYTVAENCFMEALSKVK 211 (342)
Q Consensus 152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~al~~~~ 211 (342)
-|.-++..++.++|+..++++++..++.+..+..+| .+|...|+|.+.+.+..+-+.+..
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677788888888888887777766555544 567788888888887766666544
No 360
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.28 E-value=0.071 Score=25.49 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhCChHHHHHHH
Q psy3701 80 AWYAVGCYYYLIGRSDPARRFL 101 (342)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~ 101 (342)
+.+.+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 361
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.23 E-value=0.31 Score=39.35 Aligned_cols=65 Identities=9% Similarity=-0.026 Sum_probs=50.1
Q ss_pred cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh
Q psy3701 111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSI 175 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 175 (342)
...++..++..+...|+++.++..+++.+..+|.+...+..+-..|...|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 35567777777777888888888888888888887777777778888888888888888777653
No 362
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.03 E-value=0.73 Score=44.11 Aligned_cols=106 Identities=7% Similarity=-0.048 Sum_probs=71.2
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh-
Q psy3701 185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL- 263 (342)
Q Consensus 185 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 263 (342)
....++...+.|+.|+..|++.....|...+ --++.+..|.++...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~ 526 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKE---------------------------------GYEAQFRLGITLLEKA 526 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCccc---------------------------------chHHHHHhhHHHHHHH
Confidence 4456777888999999999999888876630 024555556555432
Q ss_pred ------hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701 264 ------KKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML 324 (342)
Q Consensus 264 ------g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 324 (342)
..+++|+.-|++.- -.|.-|--|...|.+|.++|++++-++++.-+++..|++|..-..-
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (932)
T PRK13184 527 SEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLR 592 (932)
T ss_pred HhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 24566666665532 2345555677777778888888888888888888888777654433
No 363
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.99 E-value=0.093 Score=27.82 Aligned_cols=28 Identities=14% Similarity=-0.009 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701 80 AWYAVGCYYYLIGRSDPARRFLGKATSL 107 (342)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 107 (342)
++..+|.+....++|++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555666666666666666666665543
No 364
>KOG2114|consensus
Probab=93.90 E-value=3 Score=38.80 Aligned_cols=52 Identities=25% Similarity=0.200 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701 55 YKGALLADLFKLAHELVDLYPD-SAIAWYAVGCYYYLIGRSDPARRFLGKATSL 107 (342)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 107 (342)
+++.+++-|+.+++.. ..+++ -...+...|..++..|++++|...|-+.+..
T Consensus 345 ~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 345 FKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3444444444444432 33333 2466778899999999999999999998864
No 365
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.88 E-value=0.14 Score=27.11 Aligned_cols=29 Identities=14% Similarity=0.382 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 285 STFCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
+++..+|.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35666777777777777777777777765
No 366
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.63 E-value=7.4 Score=37.70 Aligned_cols=129 Identities=17% Similarity=0.022 Sum_probs=90.5
Q ss_pred HHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhh-------ccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701 84 VGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVE-------NEHDQAMAAYFNAFNLFKGCHLPALYVG 153 (342)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~-------g~~~~A~~~~~~al~~~~~~~~~~~~l~ 153 (342)
...++...+.|++|+..|++.-...|.. -++.+..|.....+ ..+++|+..|++.- -.|.-+.-+...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence 3456677788899999999988888765 35667777666543 24677887777654 3466677788888
Q ss_pred HHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc-----ChhHHHHHHHHHHHhhhhc
Q psy3701 154 LECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH-----NYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~al~~~~~~ 213 (342)
.+|.++|++++-++++.-+++..|.+|.+-...-.+-+++. +-..|....--++...|..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999988765443333222221 2245556666667777765
No 367
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.60 E-value=0.56 Score=36.04 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=57.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHH
Q psy3701 257 GHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFAT 321 (342)
Q Consensus 257 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 321 (342)
..-+.+.+..++|+...+.-++..|.+......+-.++.-.|+|++|...++-+-++.|++..-.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a 72 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGA 72 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHH
Confidence 34466778999999999999999999999888899999999999999999999999999887433
No 368
>KOG3807|consensus
Probab=93.45 E-value=3.8 Score=33.83 Aligned_cols=144 Identities=15% Similarity=0.054 Sum_probs=82.5
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701 151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG 230 (342)
Q Consensus 151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 230 (342)
.+-....+..+..+-++.-..+++++|....++..++.- ...-..+|.+.++++++.....- +..
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~y-------------r~s 253 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIY-------------RQS 253 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHH-------------hhH
Confidence 344445555667777777788888888887777766542 22334577777777777544331 000
Q ss_pred hhHHHHHHHhchhccCCCC--hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch--HHHHHHHHHHHHhCChHHHHHH
Q psy3701 231 HKAEDKVKQLGGEIIADKW--EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA--STFCCIGYIQALTGDLDSAVNY 306 (342)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~ 306 (342)
+.....-...+.....+.. ..+...++.|..++|+..+|++.++...+..|-.. .++-++-..+....-|.+....
T Consensus 254 qq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqav 333 (556)
T KOG3807|consen 254 QQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAV 333 (556)
T ss_pred HHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000001111111 23455689999999999999999999888776322 4555666666665555544444
Q ss_pred HHH
Q psy3701 307 FHK 309 (342)
Q Consensus 307 ~~~ 309 (342)
+-+
T Consensus 334 Lak 336 (556)
T KOG3807|consen 334 LAK 336 (556)
T ss_pred HHh
Confidence 433
No 369
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=3.5 Score=33.32 Aligned_cols=202 Identities=9% Similarity=-0.025 Sum_probs=107.0
Q ss_pred HHHHHHHHhCChHHHHHHHHHHhhcCCC--------cHHHHHHhhhHHHhhccHHHHHHHHH---HHhccCCC--CchHH
Q psy3701 83 AVGCYYYLIGRSDPARRFLGKATSLDKL--------FLPAWLMYGHSFAVENEHDQAMAAYF---NAFNLFKG--CHLPA 149 (342)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~---~al~~~~~--~~~~~ 149 (342)
.++.-....+++++|+..|.+.+...-. ...+...++.+|...|++..--+... .+...... .....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 3444445556666666666666554111 12234556666666665543222221 11111111 00000
Q ss_pred HHH-HHHHhhhCCHHHHHHHHHHHHhhCCCCh------HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccch
Q psy3701 150 LYV-GLECGLTNNARLASKFFDLALSIAHEDP------FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKW 222 (342)
Q Consensus 150 ~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 222 (342)
..+ -..-.....++.-+..+...++...... ..-..+..++++.|+|.+|+......+..-....
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D-------- 159 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD-------- 159 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--------
Confidence 000 0111122344555555555544332222 1234567888999999999988777665433221
Q ss_pred hhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCchHHH--HHHHHHHH
Q psy3701 223 EPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMKASTF--CCIGYIQA 295 (342)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~--~~l~~~~~ 295 (342)
..+....++..-..+|....+..++...+..|-.. .|....+. ..-|....
T Consensus 160 ----------------------DK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhc 217 (421)
T COG5159 160 ----------------------DKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHC 217 (421)
T ss_pred ----------------------CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceee
Confidence 33444567777788888888888887777666443 23222221 22345556
Q ss_pred HhCChHHHHHHHHHHHhcc
Q psy3701 296 LTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 296 ~~g~~~~A~~~~~~al~~~ 314 (342)
.-.+|..|..+|-++++-.
T Consensus 218 dd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 218 DDRDYKTASSYFIEALEGF 236 (421)
T ss_pred ccccchhHHHHHHHHHhcc
Confidence 6678999999999988743
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.36 E-value=1 Score=28.29 Aligned_cols=53 Identities=11% Similarity=-0.066 Sum_probs=29.9
Q ss_pred HHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHh---hhHHHhhccHHHHHHHHH
Q psy3701 84 VGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMY---GHSFAVENEHDQAMAAYF 136 (342)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l---a~~~~~~g~~~~A~~~~~ 136 (342)
.|.-++...+.++|+..++++++..++.++-+..+ ..++...|++.+++.+..
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666665555444333 345556666666655543
No 371
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.98 E-value=7.7 Score=36.07 Aligned_cols=57 Identities=9% Similarity=-0.096 Sum_probs=43.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701 256 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312 (342)
Q Consensus 256 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 312 (342)
........++++.+...+...-..........+.+|..+...|+.++|...|+++..
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 344455788888877777775443345667788999999999999999999999854
No 372
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.93 E-value=3.3 Score=31.65 Aligned_cols=54 Identities=13% Similarity=0.117 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC----chHHHHHHHHHHHHhCChHHHH
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM----KASTFCCIGYIQALTGDLDSAV 304 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~g~~~~A~ 304 (342)
++..+.+|..|. ..+.++|+..+-+++++.+. +++++..|+.++.++|+++.|.
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566667776665 45677777777777776533 3677777777777777777764
No 373
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.92 E-value=0.42 Score=39.05 Aligned_cols=62 Identities=11% Similarity=-0.040 Sum_probs=41.5
Q ss_pred HHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701 97 ARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL 158 (342)
Q Consensus 97 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 158 (342)
|+.+|.+|+.+.|.+...|..+|.+....|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56777777777777777777777777777777777777777776654455566666655555
No 374
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=92.88 E-value=4.8 Score=33.36 Aligned_cols=162 Identities=10% Similarity=-0.001 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHHhhh--------------------------CCHHHHHHHHHHHHhhC-CCChH
Q psy3701 129 DQAMAAYFNAFNLFKGCHLPALYVGLECGLT--------------------------NNARLASKFFDLALSIA-HEDPF 181 (342)
Q Consensus 129 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~A~~~~~~~~~~~-~~~~~ 181 (342)
++|+..-+-...+.|+.++++-.++.+.... +-.+++...+.+++... |.-..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPYq 292 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPYQ 292 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChHH
Confidence 5666666666666676666665555443322 23456666666665543 22222
Q ss_pred HHHHHHHHHHH-----hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHH
Q psy3701 182 VIHEMGVIAYQ-----NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNL 256 (342)
Q Consensus 182 ~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 256 (342)
+.-.++.++.. .-+|..-..+|+-.....|+. .+-.|.
T Consensus 293 lqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-------------------------------------vV~LNR 335 (415)
T COG4941 293 LQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-------------------------------------VVTLNR 335 (415)
T ss_pred HHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-------------------------------------eEeehH
Confidence 22333333332 224445555555555555544 244556
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701 257 GHVNRKLKKYEEALEFHKQALVV--APMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327 (342)
Q Consensus 257 ~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 327 (342)
+.+..+..-.+.++...+..... -......+...|..+.++|+.++|...|++++.+.++..+..+...+.
T Consensus 336 AVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 336 AVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred HHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 66665555556666666555443 123445667789999999999999999999999998887766655443
No 375
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.73 E-value=6.6 Score=34.63 Aligned_cols=60 Identities=17% Similarity=0.052 Sum_probs=40.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH--------------------hCChHHHHHHHHHHHhcccCc
Q psy3701 258 HVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL--------------------TGDLDSAVNYFHKTMALKRDD 317 (342)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al~~~p~~ 317 (342)
.-|....++++|++.+.-.++.+..+..+.-.+..-+.. -.++.+++.-|++.+..+..+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 445667889999999999998888777666555544443 234556666666666555444
No 376
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.72 E-value=2.4 Score=32.40 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHHhccCC-CCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHhcChhHHH
Q psy3701 127 EHDQAMAAYFNAFNLFK-GCHLPALYVGLECGLTNNARLASKFFDLALSIAHE----DPFVIHEMGVIAYQNHNYTVAE 200 (342)
Q Consensus 127 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~ 200 (342)
.-++|...|-++-.... +++...+.+|..|. ..+.++++..+.+++++.+. +++++..++.++..+|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34566666665543322 24455555665555 67888899999988887644 4788999999999999998874
No 377
>KOG0546|consensus
Probab=92.49 E-value=0.29 Score=40.37 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=89.3
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701 186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK 265 (342)
Q Consensus 186 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (342)
.+.-.++.++++.|..-+.+++..-...+.. ..+ +... +.............+++.+-...+.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~---~~~------------e~~~--~~~~~~~~r~~~~~n~~~~~lk~~~ 290 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRD---REK------------EQEN--RIPPLRELRFSIRRNLAAVGLKVKG 290 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccc---ccc------------cccc--ccccccccccccccchHHhcccccC
Confidence 4556778888888888888877643211000 000 0000 0001111123455668888889999
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701 266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE 329 (342)
Q Consensus 266 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 329 (342)
+..|+.....++..++....+++..+..+....++++|++.++.+....|++......+...-.
T Consensus 291 ~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 291 RGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred CCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 9999998888888888889999999999999999999999999999999999977766654443
No 378
>KOG1538|consensus
Probab=92.04 E-value=9.4 Score=34.80 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=15.1
Q ss_pred HHhHHHHhhccHHHHHHHHHHH
Q psy3701 37 LKGRVYEALENRALAADCYKGA 58 (342)
Q Consensus 37 ~~g~~~~~~~~~~~A~~~~~~~ 58 (342)
+++....-.|.|.+|.++|.+.
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHc
Confidence 4566666677777777777664
No 379
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.99 E-value=0.78 Score=36.91 Aligned_cols=59 Identities=8% Similarity=-0.060 Sum_probs=45.2
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHH
Q psy3701 115 WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLAL 173 (342)
Q Consensus 115 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 173 (342)
....+..|...|.+.+|+++.++++.++|-+...+..+-.++...|+--.+.+.|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456667778888888888888888888888888888888888888777777776654
No 380
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.99 E-value=0.75 Score=37.00 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 311 (342)
.+...+..|...|.+.+|+++.++++..+|-+...+..+-.++..+|+--.+...|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445567778899999999999999999999999999999999999999888888877653
No 381
>KOG1463|consensus
Probab=91.70 E-value=6.9 Score=32.53 Aligned_cols=256 Identities=16% Similarity=0.070 Sum_probs=139.5
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q psy3701 33 ALLLLKGRVYEALENRALAADCYKGAL-------LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKAT 105 (342)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~-------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 105 (342)
.....+|+.+...|+..+-.+...+.. ..++..+.+.+++..+.. .+..+.-+..+..++
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~-------------~~~~~~~i~l~~~cI 115 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKI-------------DDGTGDQIELCTECI 115 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-------------CCCcchHHHHHHHHH
Confidence 344467888888888877666555533 123333333333322211 112223333444444
Q ss_pred hcCCCcHH------HHHHhhhHHHhhccHHHHHHHHHHHhc----cCCC--CchHHHHHHHHHhhhCCHHHHHHHHHHHH
Q psy3701 106 SLDKLFLP------AWLMYGHSFAVENEHDQAMAAYFNAFN----LFKG--CHLPALYVGLECGLTNNARLASKFFDLAL 173 (342)
Q Consensus 106 ~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 173 (342)
+.....-. .-..+...|...++|.+|+......++ ++.. -..++..-...|....+..+|...+..+-
T Consensus 116 eWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsAR 195 (411)
T KOG1463|consen 116 EWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSAR 195 (411)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHH
Confidence 33222211 234578889999999999988766554 2322 23455566778888999999988888775
Q ss_pred hhC-----CCCh--HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccC
Q psy3701 174 SIA-----HEDP--FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIA 246 (342)
Q Consensus 174 ~~~-----~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
... |... .+-..-|.++....+|..|..+|-++++-...-.... .+.
T Consensus 196 T~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v------~A~-------------------- 249 (411)
T KOG1463|consen 196 TTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV------KAL-------------------- 249 (411)
T ss_pred HhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH------HHH--------------------
Confidence 432 2111 1222335566666899999999999887554332000 000
Q ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH--hCChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701 247 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL--TGDLDSAVNYFHKTMALKRDDSFATTML 324 (342)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l 324 (342)
...-|..+..+....-+--.++-.-+.+++....+.++....+.++.+ +.+|+.|...|+.-+..+| .+...+
T Consensus 250 --~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl 324 (411)
T KOG1463|consen 250 --TSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHL 324 (411)
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHH
Confidence 001122222222222222334444445555555666777777777653 4577777777777666544 555555
Q ss_pred HHHHHHhh
Q psy3701 325 SYVIEQLI 332 (342)
Q Consensus 325 ~~~~~~~~ 332 (342)
..++..+.
T Consensus 325 ~~Lyd~lL 332 (411)
T KOG1463|consen 325 QSLYDNLL 332 (411)
T ss_pred HHHHHHHH
Confidence 55554443
No 382
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.40 E-value=1.2 Score=24.53 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=12.9
Q ss_pred HHHHHHHHhCChHHHHHHHHHHH
Q psy3701 289 CIGYIQALTGDLDSAVNYFHKTM 311 (342)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~al 311 (342)
.++..|..+|+.+.|+..+++++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 45555555555555555555555
No 383
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.23 E-value=5.9 Score=34.16 Aligned_cols=58 Identities=14% Similarity=-0.051 Sum_probs=38.9
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHh--------hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701 152 VGLECGLTNNARLASKFFDLALS--------IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSK 209 (342)
Q Consensus 152 l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 209 (342)
+.+++..+|+|..|++.++..-- ..+-+..+++..|.+|+.+++|.+|++.|..++-.
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777666554311 11224456788899999999999999988887654
No 384
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.22 E-value=2.1 Score=36.77 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
...+.+++.-+|+|..|++.++.. +++.... -...++....+++.+|-+|+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l---------------------------~~~V~~~~is~~YyvGFaylM 176 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGL---------------------------YTKVPACHISTYYYVGFAYLM 176 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-Ccccchh---------------------------hccCcchheehHHHHHHHHHH
Confidence 456778889999999999988653 2221110 001223335788999999999
Q ss_pred hhhHHHHHHHHHHHHh
Q psy3701 263 LKKYEEALEFHKQALV 278 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~ 278 (342)
+++|.+|++.|...+.
T Consensus 177 lrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 177 LRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998874
No 385
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=91.18 E-value=0.74 Score=22.86 Aligned_cols=29 Identities=14% Similarity=0.080 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy3701 160 NNARLASKFFDLALSIAHEDPFVIHEMGV 188 (342)
Q Consensus 160 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 188 (342)
|+.+.+...|++++...|.++.+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 35566777777777777777777766554
No 386
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=91.03 E-value=6.7 Score=31.19 Aligned_cols=60 Identities=5% Similarity=-0.020 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCc-HHHHHHhhhHHH-hhccHHHHHHHHHHHhc
Q psy3701 81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLF-LPAWLMYGHSFA-VENEHDQAMAAYFNAFN 140 (342)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 140 (342)
+..++.+..+.|+|++.+.+.++++..+|.. .+-...++.+|- ..|....+...+.....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 5667888888999999999999998887653 333444444442 23444444444444333
No 387
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=90.87 E-value=0.73 Score=22.87 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3701 265 KYEEALEFHKQALVVAPMKASTFCCIG 291 (342)
Q Consensus 265 ~~~~A~~~~~~al~~~~~~~~~~~~l~ 291 (342)
+.+.|...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555566666655555555555443
No 388
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.75 E-value=2.5 Score=33.95 Aligned_cols=61 Identities=11% Similarity=0.050 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc------HHHHHHhhhHHHhhccHHHHHHHHHHH
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF------LPAWLMYGHSFAVENEHDQAMAAYFNA 138 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 138 (342)
......+|..|+..|++++|.++|+.+....... ......+..|+...|+.+..+...-+.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445667778888888888888887775432221 233445566666666666666554443
No 389
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.39 E-value=0.69 Score=25.49 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701 254 NNLGHVNRKLKKYEEALEFHKQALVV 279 (342)
Q Consensus 254 ~~l~~~~~~~g~~~~A~~~~~~al~~ 279 (342)
+.++.+|..+|+.+.|.+.+++.+..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999953
No 390
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=90.25 E-value=5.4 Score=34.36 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=14.3
Q ss_pred HHHHHHhCChHHHHHHHHHHhhc
Q psy3701 85 GCYYYLIGRSDPARRFLGKATSL 107 (342)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~a~~~ 107 (342)
|..++..-++.+|.+.+++.+..
T Consensus 176 ~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 176 GYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 44445566777777777766554
No 391
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=90.24 E-value=11 Score=32.52 Aligned_cols=58 Identities=12% Similarity=0.008 Sum_probs=33.3
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHhhCCCChH--HHHH--HHHHHHHhcChhHHHHHHHHHHHh
Q psy3701 152 VGLECGLTNNARLASKFFDLALSIAHEDPF--VIHE--MGVIAYQNHNYTVAENCFMEALSK 209 (342)
Q Consensus 152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~--l~~~~~~~~~~~~A~~~~~~al~~ 209 (342)
.+...+..++|..|.+.+......-|.... .+.. .|..+...-++++|.+.+++.+..
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344556667777777777776664233322 2222 233444566777777777776654
No 392
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.01 E-value=13 Score=32.90 Aligned_cols=78 Identities=14% Similarity=0.079 Sum_probs=42.2
Q ss_pred HHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHH
Q psy3701 190 AYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEA 269 (342)
Q Consensus 190 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 269 (342)
|....++++|+..+...++.+..+. .+.-.+..++...+ ......+-|....++-..-.++.++
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~-----~ar~~~i~~lRd~y-----------~~~~~~e~yl~~s~i~~~~rnf~~~ 278 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDV-----WARKEIIENLRDKY-----------RGHSQLEEYLKISNISQSGRNFFEA 278 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhh-----hHHHHHHHHHHHHh-----------ccchhHHHHHHhcchhhccccHHHH
Confidence 3456788899999988888877762 11111111111111 1111123344444444445677888
Q ss_pred HHHHHHHHhhCCCc
Q psy3701 270 LEFHKQALVVAPMK 283 (342)
Q Consensus 270 ~~~~~~al~~~~~~ 283 (342)
+.-|++.+..+..+
T Consensus 279 l~dFek~m~f~eGn 292 (711)
T COG1747 279 LNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHHHHheeccCc
Confidence 88888887665443
No 393
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=89.85 E-value=5.7 Score=28.44 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=25.5
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHH
Q psy3701 157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFM 204 (342)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 204 (342)
...+.....+.+++..+..++.++..+..+..++.+. +..+.+..++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3345566666666666666555556666666666543 2233344443
No 394
>PF12854 PPR_1: PPR repeat
Probab=89.77 E-value=1.1 Score=22.91 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHH
Q psy3701 285 STFCCIGYIQALTGDLDSAVNYFH 308 (342)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~ 308 (342)
.+|..+-..+.+.|+.++|.+.|+
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444555555555554444
No 395
>PF13041 PPR_2: PPR repeat family
Probab=89.66 E-value=2.4 Score=23.90 Aligned_cols=29 Identities=31% Similarity=0.208 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701 251 PLLNNLGHVNRKLKKYEEALEFHKQALVV 279 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 279 (342)
..|..+-..+.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 45666667777777777777777776654
No 396
>PF12854 PPR_1: PPR repeat
Probab=89.60 E-value=1.1 Score=22.98 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGK 103 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~ 103 (342)
+..+|..+-..+.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345566666666666666666666554
No 397
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.58 E-value=3.6 Score=25.77 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=35.7
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWY 82 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 82 (342)
+..+...+.-+-..|++++|+.+|+++ +.++.+++...|+++.-..
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~a-----Ie~L~q~~~~~pD~~~k~~ 51 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKA-----IEVLSQIVKNYPDSPTRLI 51 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH-----HHHHHHHHHhCCChHHHHH
Confidence 344556788888999999999999996 4778888888888765433
No 398
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.33 E-value=2.4 Score=30.51 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcC
Q psy3701 286 TFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEES 335 (342)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 335 (342)
.....+.-....|++.-|.+....++..+|++..++...+.++.+++...
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 34445555556666666666666666666666666666666666655443
No 399
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.20 E-value=11 Score=30.69 Aligned_cols=57 Identities=12% Similarity=-0.076 Sum_probs=33.8
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHH
Q psy3701 37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97 (342)
Q Consensus 37 ~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A 97 (342)
.+++-....+++++|+..|.+.+-..+..- + +.-.+...+...++..|...|++..-
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~d-e---k~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKD-E---KTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChh-h---hhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 456667778889999988888541100000 0 00112345677888888888876543
No 400
>PF13041 PPR_2: PPR repeat family
Probab=88.82 E-value=2.7 Score=23.71 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSK 209 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 209 (342)
...|..+-..+.+.|++++|.+.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 344555666666666666666666666543
No 401
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.72 E-value=11 Score=30.43 Aligned_cols=61 Identities=8% Similarity=-0.041 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHHHHHhCChH-HHHHHHHHHhhcC------CCcHHHHHHhhhHHHhhccHHHHHHHHH
Q psy3701 76 DSAIAWYAVGCYYYLIGRSD-PARRFLGKATSLD------KLFLPAWLMYGHSFAVENEHDQAMAAYF 136 (342)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 136 (342)
.+......++.+......-+ +-.++.+++++.. -.++..+..+|..+...|++.+|...+-
T Consensus 47 ~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 47 VDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34444456666655554322 2333444444432 2357788888888888888888877663
No 402
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.49 E-value=11 Score=30.16 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------ASTFCCIGYIQALTGDLDSAVNYFHKTM 311 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al 311 (342)
.+...+|..|...|++++|+++|+.+....... ..+...+..|+...|+.+..+...-+.+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 466678999999999999999999996554322 3566778888889999888777654443
No 403
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=88.36 E-value=17 Score=31.90 Aligned_cols=29 Identities=3% Similarity=-0.149 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhhcC
Q psy3701 80 AWYAVGCYYYLIGRSDPARRFLGKATSLD 108 (342)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 108 (342)
....+|+.++..++|+-|...|+.+..-.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 45668999999999999999998877643
No 404
>KOG2063|consensus
Probab=88.23 E-value=25 Score=33.80 Aligned_cols=173 Identities=12% Similarity=0.006 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcC----CCcHHHHHHhhhHHHhhccH--HHHHHHHHHHhccCCCCchH------
Q psy3701 81 WYAVGCYYYLIGRSDPARRFLGKATSLD----KLFLPAWLMYGHSFAVENEH--DQAMAAYFNAFNLFKGCHLP------ 148 (342)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~------ 148 (342)
+..|+..|...|++++|++.+.+...-. +.....+-..-..+...+.. +-..++-.-.+..+|....-
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5667888888888888888888877633 33333333333333344433 44555555555555542110
Q ss_pred -----HH--HHHHHHhhhCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhc--------ChhHHHHH--HHHHHHhh
Q psy3701 149 -----AL--YVGLECGLTNNARLASKFFDLALSIAHE-DPFVIHEMGVIAYQNH--------NYTVAENC--FMEALSKV 210 (342)
Q Consensus 149 -----~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~--------~~~~A~~~--~~~al~~~ 210 (342)
-. ....-+......+-++.+++.++..+.. +...+..+...|.+.= +-+++.+. .++....-
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 00 1222355667777788888888776654 3444555555444321 11222222 11111111
Q ss_pred hhcCccccccchhhHHHHhhhhHHHHHHHhch---hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701 211 KQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG---EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 278 (342)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 278 (342)
+.+. .+.. ....+ ....|...+..+.++|+.++|+..|-..+.
T Consensus 667 ~~s~------------------------~Y~p~~~L~~~~-~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 667 ESSD------------------------LYDPQLLLERLN-GDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhc------------------------ccCcchhhhhcc-chhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1110 0000 01111 145778888888999999999988876654
No 405
>KOG0546|consensus
Probab=87.38 E-value=1.4 Score=36.51 Aligned_cols=108 Identities=14% Similarity=-0.079 Sum_probs=75.0
Q ss_pred HHHHHHHhCChHHHHHHHHHHhhcCC---C----------------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC
Q psy3701 84 VGCYYYLIGRSDPARRFLGKATSLDK---L----------------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG 144 (342)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~a~~~~~---~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 144 (342)
.|.-.+..++++.|..-+.++...-. . -.....+++.+-...+.+..|+..-..++..++.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s 307 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS 307 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence 45567777888887777776654211 0 0112344666667777777777777777777777
Q ss_pred CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701 145 CHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY 191 (342)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (342)
...+++..+..+....++++|++.++.+....|.+..+...+..+-.
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 78888888888888888888888888888888887776555544433
No 406
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.78 E-value=17 Score=30.30 Aligned_cols=152 Identities=11% Similarity=0.024 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC--------------------------hHHHHHHHHHHhhcCC-CcHH
Q psy3701 61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR--------------------------SDPARRFLGKATSLDK-LFLP 113 (342)
Q Consensus 61 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--------------------------~~~A~~~~~~a~~~~~-~~~~ 113 (342)
.+++.+..-+...-|..++++-.++...++..+ .+++...+.+++.... ....
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPYq 292 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPYQ 292 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChHH
Confidence 677888888889999999988888777664321 4567777777766532 2111
Q ss_pred HHHHhhhHHH-----hhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh--CCCChHHHHHH
Q psy3701 114 AWLMYGHSFA-----VENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSI--AHEDPFVIHEM 186 (342)
Q Consensus 114 ~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 186 (342)
..-.++.++. ..-++..-..+|.-.....|+ +.+-.+.+.......-...++...+..... -.+....+...
T Consensus 293 lqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~R 371 (415)
T COG4941 293 LQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAAR 371 (415)
T ss_pred HHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHH
Confidence 2222222222 223555555666666666665 556666777777666777777777766553 22344567788
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 187 GVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 187 ~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
|.++.+.|+.++|...|++++.+.++.
T Consensus 372 adlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 372 ADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred HHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 999999999999999999999998776
No 407
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=86.77 E-value=1.3 Score=21.56 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701 253 LNNLGHVNRKLKKYEEALEFHKQALV 278 (342)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~al~ 278 (342)
|..+-..|.+.|++++|.+.+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555666666666666666666543
No 408
>KOG2581|consensus
Probab=86.37 E-value=20 Score=30.74 Aligned_cols=147 Identities=17% Similarity=0.050 Sum_probs=89.9
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc---
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL--- 107 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--- 107 (342)
+...+++..-......++.+|..+-+..+.. +....+ -..+--.+..|+.+..+|-..|+...-...+...+..
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~--i~~~nr-RtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL 201 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLAS--ISIQNR-RTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL 201 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHhcch-hhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh
Confidence 3334334444555678888888776664311 000000 0011123567788888888888876666666554432
Q ss_pred --CCCc-HHHHHHhhhHHHhhccHHHHHHHHHHHhccC--CCCc--hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh
Q psy3701 108 --DKLF-LPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--KGCH--LPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180 (342)
Q Consensus 108 --~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 180 (342)
+... .-....+-+.|...+.|+.|-....+..--. .++. ...+++|.+..-+++|..|.+++-+++...|.+.
T Consensus 202 rhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 202 RHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred cCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 2221 2334556778888899999988877765221 1222 3345688888888899999999999998888743
No 409
>KOG1463|consensus
Probab=86.17 E-value=19 Score=30.14 Aligned_cols=101 Identities=17% Similarity=0.094 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh
Q psy3701 184 HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL 263 (342)
Q Consensus 184 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (342)
..+..+|+..++|.+|+......++--.... ..+...+++..-..+|...
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlD------------------------------DK~lLvev~llESK~y~~l 181 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLD------------------------------DKILLVEVHLLESKAYHAL 181 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc------------------------------cccceeeehhhhhHHHHHH
Confidence 4678889999999999988877665433221 2233345666667788888
Q ss_pred hhHHHHHHHHHHHHhhC-----CCch--HHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701 264 KKYEEALEFHKQALVVA-----PMKA--STFCCIGYIQALTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 264 g~~~~A~~~~~~al~~~-----~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 314 (342)
.+..+|...+..|-... |... ..-..-|..+..-.+|..|..+|-++.+-.
T Consensus 182 ~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 182 RNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred hcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccc
Confidence 88888888887765432 2111 112233555666689999999999998743
No 410
>KOG4014|consensus
Probab=85.99 E-value=13 Score=28.07 Aligned_cols=161 Identities=16% Similarity=0.052 Sum_probs=99.6
Q ss_pred HHHHHHHhHHHHh-hccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-----hCChHHHHHHHHHHh
Q psy3701 32 SALLLLKGRVYEA-LENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYL-----IGRSDPARRFLGKAT 105 (342)
Q Consensus 32 ~~~~~~~g~~~~~-~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~a~ 105 (342)
.+....+|..+.. +.+|++|...|..- -.....+...+.+|..++. .++...|++.+..+.
T Consensus 34 Pe~C~lLgdYlEgi~knF~~A~kv~K~n-------------Cden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC 100 (248)
T KOG4014|consen 34 PESCQLLGDYLEGIQKNFQAAVKVFKKN-------------CDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIAC 100 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc-------------ccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHh
Confidence 3455667766654 56788888888773 2233456667777766653 357889999999887
Q ss_pred hcCCCcHHHHHHhhhHHHhh-----c--cHHHHHHHHHHHhccCCCCchHHHHHHHHHh---------------------
Q psy3701 106 SLDKLFLPAWLMYGHSFAVE-----N--EHDQAMAAYFNAFNLFKGCHLPALYVGLECG--------------------- 157 (342)
Q Consensus 106 ~~~~~~~~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~--------------------- 157 (342)
.. +.+.+...+|.++..- + +.++|.+++.++-.+... .+.+.+...+.
T Consensus 101 ~~--n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~--~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~ 176 (248)
T KOG4014|consen 101 DA--NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDG--EACFLLSTMYMGGKEKFKTNAPGEGKPLDRAE 176 (248)
T ss_pred cc--CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCc--hHHHHHHHHHhccchhhcccCCCCCCCcchhh
Confidence 74 4566777777666532 2 367899999988776543 33344333332
Q ss_pred ---hhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh----cChhHHHHHHHHHHHhhh
Q psy3701 158 ---LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN----HNYTVAENCFMEALSKVK 211 (342)
Q Consensus 158 ---~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~~ 211 (342)
...+.+.|.++--++-++ +++.+.-++.+.|-.- .+-++|..+-.++.++..
T Consensus 177 ~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~ 235 (248)
T KOG4014|consen 177 LGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIME 235 (248)
T ss_pred hhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHH
Confidence 334556666666666554 3555666666655431 345677777777766543
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=85.29 E-value=6.3 Score=30.16 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 265 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
..+..++..++.+...| ++.++..++.++...|+.++|....+++..+.|.+.
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 34555666677777777 678888999999999999999999999999999444
No 412
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=85.13 E-value=19 Score=29.35 Aligned_cols=164 Identities=9% Similarity=-0.005 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCCcHHHHH--HHHHHHHHhCChHHHHHHHHHHhhc-CCC-----cHHHHHHhh
Q psy3701 50 LAADCYKGALLADLFKLAHELVDL--YPDSAIAWY--AVGCYYYLIGRSDPARRFLGKATSL-DKL-----FLPAWLMYG 119 (342)
Q Consensus 50 ~A~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~--~l~~~~~~~~~~~~A~~~~~~a~~~-~~~-----~~~~~~~la 119 (342)
+|.+.+...+.++...-+-+.+.. +|.....|. ..+..-......++-++-+.+.++. ..+ -.+++.++|
T Consensus 43 ka~e~l~~~i~d~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~a 122 (412)
T COG5187 43 KALEHLERLIIDKCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIA 122 (412)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 366666666555443333333333 565444432 2333333334445555555444432 222 257899999
Q ss_pred hHHHhhccHHHHHHHHHHHhccCCCC------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHH
Q psy3701 120 HSFAVENEHDQAMAAYFNAFNLFKGC------HLPALYVGLECGLTNNARLASKFFDLALSIAHEDP---FVIHEMGVIA 190 (342)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~ 190 (342)
..|.+.++.+.+.+...+.++..-.. ......+|.+|..+.-.++.++..+..++...+-. ..-...|...
T Consensus 123 eyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~ 202 (412)
T COG5187 123 EYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFK 202 (412)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHH
Confidence 99999999999999988877654321 12234467777777767777777777776554321 2233456666
Q ss_pred HHhcChhHHHHHHHHHHHhhhhc
Q psy3701 191 YQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 191 ~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
+...++.+|-..+...+......
T Consensus 203 m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 203 MMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred HHHHhhHHHHHHHHHHhcccccc
Confidence 77788899988888877655444
No 413
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=85.07 E-value=19 Score=29.20 Aligned_cols=68 Identities=19% Similarity=0.056 Sum_probs=43.0
Q ss_pred CCCChHHHHHHHHHHHHhhhHHHHHHHHHHH----------------HhhCCCchHHHHHHHHH-HHHhCChHHHHHHHH
Q psy3701 246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQA----------------LVVAPMKASTFCCIGYI-QALTGDLDSAVNYFH 308 (342)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------------l~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~ 308 (342)
+...+..+..+|..+.+.|++.+|..+|-.. .+-.|...+.+...+.+ |...|+...|...+.
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~ 165 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFD 165 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4445789999999999999999998777321 11234445555444433 566789998888776
Q ss_pred HHHhc
Q psy3701 309 KTMAL 313 (342)
Q Consensus 309 ~al~~ 313 (342)
.-.+.
T Consensus 166 ~f~~~ 170 (260)
T PF04190_consen 166 TFTSK 170 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 414
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=84.19 E-value=28 Score=30.51 Aligned_cols=163 Identities=14% Similarity=-0.003 Sum_probs=86.2
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHHH----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCh-------HHHHHHHH
Q psy3701 34 LLLLKGRVYEALENRALAADCYKGALLA----DLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS-------DPARRFLG 102 (342)
Q Consensus 34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~-------~~A~~~~~ 102 (342)
..-.+|...+..++|+-|...|+....+ ++... .+.+....|.+.+..+.. ++...+++
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~----------~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le 279 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKY----------LAGAQEMAALSLLMQGQSISAKIRKDEIEPYLE 279 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHH----------HHhHHHHHHHHHHhcCCCCccccccccHHHHHH
Confidence 3345899999999999999999986411 00000 122333344455544422 23334444
Q ss_pred HHhhc-----------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc--CCCCc---h--HHHHHHHHH--hhhCCH
Q psy3701 103 KATSL-----------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL--FKGCH---L--PALYVGLEC--GLTNNA 162 (342)
Q Consensus 103 ~a~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~---~--~~~~l~~~~--~~~~~~ 162 (342)
.++.. ......+....+.++...|.+.+|...+-+.... ..+.. . .+-.++.++ ......
T Consensus 280 ~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~ 359 (414)
T PF12739_consen 280 NAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRP 359 (414)
T ss_pred HHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCC
Confidence 43321 1122345566677777888887777766665544 22211 1 112233333 111000
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 163 RLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 163 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
.....-+++ ...-+..-|.-+...|+...|..+|.+++......
T Consensus 360 ~~~~~r~RK-------~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~ 403 (414)
T PF12739_consen 360 SPGLTRFRK-------YAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGK 403 (414)
T ss_pred CccchhhHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 000000000 11123345677889999999999999999887644
No 415
>KOG4279|consensus
Probab=83.88 E-value=38 Score=31.78 Aligned_cols=124 Identities=6% Similarity=-0.027 Sum_probs=74.4
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc------HHHHHHhhhHHH---hhccHHHHHHHHHHHhccCC-CCc
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF------LPAWLMYGHSFA---VENEHDQAMAAYFNAFNLFK-GCH 146 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~-~~~ 146 (342)
.+++-.++-..|....+|+.-++..+..-.+ |+. ....+..+.++- .-|+-++|+...-.+++... -.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 4677777888888888888888777665443 321 111122222222 34677888888777777643 344
Q ss_pred hHHHHHHHHHhh---------hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC-hhHHHHH
Q psy3701 147 LPALYVGLECGL---------TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN-YTVAENC 202 (342)
Q Consensus 147 ~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 202 (342)
..+...|++|.. .+..+.|+++|+++++..|.... -.+++.++...|+ ++...+.
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~~Fens~El 343 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGEHFENSLEL 343 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhhhccchHHH
Confidence 555555666543 35677888888888888875432 2455555555553 3444433
No 416
>KOG4151|consensus
Probab=83.85 E-value=5.7 Score=36.78 Aligned_cols=110 Identities=17% Similarity=0.107 Sum_probs=85.0
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH--H
Q psy3701 185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR--K 262 (342)
Q Consensus 185 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~ 262 (342)
.-|..++..+++..+.--|..++.+-|.+. ...+....+.+.+++ .
T Consensus 58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~--------------------------------~~~a~~~~~~~s~~m~~~ 105 (748)
T KOG4151|consen 58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDH--------------------------------HVVATLRSNQASCYMQLG 105 (748)
T ss_pred hhhhHHhhhhhhhccchhhhhhheeccccc--------------------------------hhhhhHHHHHHHHHhhcC
Confidence 345667778888888888888888888552 222345556666655 4
Q ss_pred hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701 263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 326 (342)
.|++.+++.-..-++...|....++...+.+|...++.+-|++...-.....|.+..+...+.+
T Consensus 106 l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~e 169 (748)
T KOG4151|consen 106 LGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEE 169 (748)
T ss_pred ccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Confidence 5789999999999999999999999999999999999999999988888899998665553333
No 417
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.76 E-value=24 Score=28.63 Aligned_cols=139 Identities=13% Similarity=0.037 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHH
Q psy3701 162 ARLASKFFDLALSIAHEDPFVIHEMGVIAYQN--HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQ 239 (342)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (342)
.+.-+..+..+++.+|.+..+|...-.++..- .++..-....++.++.++.+- ..|..-..
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNy-----H~W~YR~~------------ 152 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNY-----HVWSYRRW------------ 152 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhccccccc-----ceeeeEee------------
Confidence 34445567777778888877777766665543 456666777777777777762 11110000
Q ss_pred hchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHH---HHHHHHhCC------hHHHHHHHHHH
Q psy3701 240 LGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI---GYIQALTGD------LDSAVNYFHKT 310 (342)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l---~~~~~~~g~------~~~A~~~~~~a 310 (342)
+.. -+.-...-..+..-.++-...+..++.+..+|... -......|+ +++-+++.-.+
T Consensus 153 ------------vl~-~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~ 219 (328)
T COG5536 153 ------------VLR-TIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDK 219 (328)
T ss_pred ------------eee-cchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhh
Confidence 000 01111112223333555556667777777777655 222223333 34455666666
Q ss_pred HhcccCchhHHhHHHHHHHH
Q psy3701 311 MALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 311 l~~~p~~~~~~~~l~~~~~~ 330 (342)
+-.+|++..++..+..+.+.
T Consensus 220 if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 220 IFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred hhcCccccchhhHHHHHhcc
Confidence 77788888777766555443
No 418
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.55 E-value=5.8 Score=28.54 Aligned_cols=51 Identities=12% Similarity=-0.118 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccH
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH 128 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 128 (342)
.+.....+...+..|++.-|..+.+.++..+|++..+...++.++..+|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 455566677777788888888888888888888888887777777766653
No 419
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=82.36 E-value=3.4 Score=20.61 Aligned_cols=26 Identities=38% Similarity=0.304 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701 253 LNNLGHVNRKLKKYEEALEFHKQALV 278 (342)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~al~ 278 (342)
|..+-..|.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455556666666666666665543
No 420
>KOG0276|consensus
Probab=81.45 E-value=23 Score=32.12 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=20.9
Q ss_pred CcHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701 76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATS 106 (342)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 106 (342)
++..-|..||.+....+++..|.++|.++..
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 4556677777777777777777777776543
No 421
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=81.33 E-value=16 Score=25.98 Aligned_cols=54 Identities=9% Similarity=-0.009 Sum_probs=37.1
Q ss_pred HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 260 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
+...|+-++--+.+....+....++..+..+|.+|.+.|+..+|-+.+.+|-+.
T Consensus 96 lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 445666666666666666656677899999999999999999999999988764
No 422
>KOG4279|consensus
Probab=80.83 E-value=51 Score=31.06 Aligned_cols=102 Identities=9% Similarity=-0.071 Sum_probs=70.8
Q ss_pred cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC------CchHHHHHHHHHhh---hCCHHHHHHHHHHHHhhC-CCCh
Q psy3701 111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG------CHLPALYVGLECGL---TNNARLASKFFDLALSIA-HEDP 180 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~-~~~~ 180 (342)
.++.-.++-..|....+|+.-++..+..-.+ |+ .....+..+.++-+ -|+-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3667777888899999999888877665444 32 12223333444333 478888998888877754 4456
Q ss_pred HHHHHHHHHHHH---------hcChhHHHHHHHHHHHhhhhc
Q psy3701 181 FVIHEMGVIAYQ---------NHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 181 ~~~~~l~~~~~~---------~~~~~~A~~~~~~al~~~~~~ 213 (342)
+.+...|++|-. .+..+.|+.+|+++.+..|..
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~ 320 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE 320 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence 777777877753 345578999999999998876
No 423
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=80.24 E-value=8.7 Score=32.97 Aligned_cols=43 Identities=14% Similarity=0.013 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHH
Q psy3701 94 SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYF 136 (342)
Q Consensus 94 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 136 (342)
.-+|+..++.++..+|.+......+..+|...|-.+.|...|.
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455555666666666666666666666666666666666654
No 424
>KOG4014|consensus
Probab=79.89 E-value=24 Score=26.71 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=76.7
Q ss_pred CcHHHHHHHHHHHHH-hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHH-----hhccHHHHHHHHHHHhccCCCCchHH
Q psy3701 76 DSAIAWYAVGCYYYL-IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFA-----VENEHDQAMAAYFNAFNLFKGCHLPA 149 (342)
Q Consensus 76 ~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~ 149 (342)
..|+....||...-. +.++++|...|..-..-+. .+...+.+|.-+. ..++...|++.+..+-.. +.+.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHH
Confidence 457778888887754 4588999999887665443 3455555554433 356788999999988774 456677
Q ss_pred HHHHHHHhhh-----C--CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy3701 150 LYVGLECGLT-----N--NARLASKFFDLALSIAHEDPFVIHEMGVIAYQ 192 (342)
Q Consensus 150 ~~l~~~~~~~-----~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (342)
.++|.++..- + +..+|++++.++-.+. +..+.+.+...++.
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMG 156 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhc
Confidence 7777776543 2 3778999999987654 55566666666554
No 425
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.77 E-value=15 Score=24.39 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=40.0
Q ss_pred HHHHHHHHhhC-CCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhH
Q psy3701 270 LEFHKQALVVA-PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTM 323 (342)
Q Consensus 270 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 323 (342)
.+.++++-..+ +--+..+..+|.+|...|+.+.|.+-|+.--.+.|++......
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDF 111 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDF 111 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHH
Confidence 34445544333 3345678889999999999999999999999999987754443
No 426
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.77 E-value=35 Score=28.62 Aligned_cols=194 Identities=13% Similarity=0.097 Sum_probs=97.7
Q ss_pred HHHHHHHHhhcCCCcHHHH---HHhhhHHHhhccHHHHHHHHHHHhccCC---C----CchHHHHHHHHHhhhCCHHHHH
Q psy3701 97 ARRFLGKATSLDKLFLPAW---LMYGHSFAVENEHDQAMAAYFNAFNLFK---G----CHLPALYVGLECGLTNNARLAS 166 (342)
Q Consensus 97 A~~~~~~a~~~~~~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~~---~----~~~~~~~l~~~~~~~~~~~~A~ 166 (342)
+...|+++.+.-|+..... ..-|.++...++|.++...+..+-.... + ++.+-...|......
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vND------- 112 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMIND------- 112 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhcc-------
Confidence 4567788888777655432 3467888888888887777665543321 1 111111222222111
Q ss_pred HHHHHHHhhCCCC---hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchh
Q psy3701 167 KFFDLALSIAHED---PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGE 243 (342)
Q Consensus 167 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
...+..|.. ..+.+.+|.-|+..++++.|.--|.++......-. ....+..+......++.
T Consensus 113 ----Ni~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AK------------e~~~~ei~ka~~e~ds~ 176 (449)
T COG3014 113 ----NVRAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAK------------EFYYEEVQKAIKEIDSS 176 (449)
T ss_pred ----chhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhc
Confidence 111112221 22456677888888888888888888876543321 11111222222223333
Q ss_pred ccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc
Q psy3701 244 IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD 317 (342)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 317 (342)
..++........-..+ -...|..=...|+.- .+-.++.+-+..|..+.-.|++.++...+..+.-+.|+.
T Consensus 177 k~~~N~~~~~ae~s~~--i~n~Y~ny~~~yea~--~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~ 246 (449)
T COG3014 177 KHNINMERSRAEVSEI--LNNTYSNYLDKYEAY--QGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQ 246 (449)
T ss_pred cCCCchhHHHHHHHHH--HHHHHHHHHHHHHhh--cccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchh
Confidence 3333222221111110 011111111112111 122345555666777777888899999999998888873
No 427
>KOG2114|consensus
Probab=79.41 E-value=59 Score=30.98 Aligned_cols=76 Identities=12% Similarity=0.018 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHH-----------------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q psy3701 28 SEMKSALLLLKGRVYEALENRALAADCYKGALL-----------------ADLFKLAHELVDLYPDSAIAWYAVGCYYYL 90 (342)
Q Consensus 28 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-----------------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 90 (342)
......+...-|..++.+|++++|...|-+.+- .+...+++.+.+..-.+.+--..|-.+|.+
T Consensus 364 ~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiK 443 (933)
T KOG2114|consen 364 EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIK 443 (933)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHH
Confidence 344566777789999999999999999988761 344455555555554455555556677777
Q ss_pred hCChHHHHHHHHH
Q psy3701 91 IGRSDPARRFLGK 103 (342)
Q Consensus 91 ~~~~~~A~~~~~~ 103 (342)
+++.++-.++.++
T Consensus 444 lkd~~kL~efI~~ 456 (933)
T KOG2114|consen 444 LKDVEKLTEFISK 456 (933)
T ss_pred hcchHHHHHHHhc
Confidence 7776655544443
No 428
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=79.24 E-value=3.8 Score=25.70 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=8.0
Q ss_pred hccHHHHHHHHHHHhc
Q psy3701 125 ENEHDQAMAAYFNAFN 140 (342)
Q Consensus 125 ~g~~~~A~~~~~~al~ 140 (342)
.|++++|+.+|..+++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3455555555554443
No 429
>KOG2561|consensus
Probab=79.17 E-value=23 Score=30.76 Aligned_cols=106 Identities=19% Similarity=0.075 Sum_probs=64.0
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCcHHHHHHHHHHHHHhCCh----------HHHHHHHH
Q psy3701 34 LLLLKGRVYEALENRALAADCYKGALLADLFKLA-HELVDLYPDSAIAWYAVGCYYYLIGRS----------DPARRFLG 102 (342)
Q Consensus 34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~-~~~~~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~ 102 (342)
.+..+|++.+....|++|+.++-.+. +.+..+ .++++.-.+.+..-.-+.+||+.+.+. ..|.+.|.
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleAD--e~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEAD--ESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 44457888888888888888777653 222222 233444444455555677888887653 33444444
Q ss_pred HHhhc---------CCCcH------HHHHHhhhHHHhhccHHHHHHHHHHHhcc
Q psy3701 103 KATSL---------DKLFL------PAWLMYGHSFAVENEHDQAMAAYFNAFNL 141 (342)
Q Consensus 103 ~a~~~---------~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 141 (342)
++.-. .+..| ..+..-|.+.+.+|+-++|.++++.+...
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 43221 12222 23455678888888888888888877543
No 430
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=78.83 E-value=6.2 Score=19.61 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALV 278 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 278 (342)
.|..+..++.+.|+++.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 431
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=78.39 E-value=21 Score=30.68 Aligned_cols=48 Identities=17% Similarity=-0.004 Sum_probs=39.0
Q ss_pred hccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHH
Q psy3701 125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLA 172 (342)
Q Consensus 125 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 172 (342)
....-+|+..++.++...|.+......+..+|...|-.+.|...|...
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 344567888888888888888888888888888888888888888654
No 432
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=78.14 E-value=18 Score=25.67 Aligned_cols=54 Identities=13% Similarity=0.024 Sum_probs=32.9
Q ss_pred HhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701 156 CGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSK 209 (342)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 209 (342)
....|+-++-.+.+....+....+|..+..+|.+|.+.|+..++-+.+.+|-+.
T Consensus 96 lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 445566666666666666555567777888888888888888888887777654
No 433
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.21 E-value=12 Score=28.70 Aligned_cols=48 Identities=13% Similarity=-0.004 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhh
Q psy3701 164 LASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212 (342)
Q Consensus 164 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 212 (342)
..++..++.++..| ++.++..++.++...|+.++|....+++....|.
T Consensus 129 ~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 129 AYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34444455555555 5566666667777777777777777777666663
No 434
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.92 E-value=36 Score=26.67 Aligned_cols=102 Identities=17% Similarity=0.046 Sum_probs=69.8
Q ss_pred HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 267 (342)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (342)
.-+.+.++.++|+...+.-++..|.+ ......+-..+.-.|+++
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtd------------------------------------a~~RhflfqLlcvaGdw~ 52 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTD------------------------------------AGGRHFLFQLLCVAGDWE 52 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCcc------------------------------------ccchhHHHHHHhhcchHH
Confidence 34566778888888888888888877 356666777888889999
Q ss_pred HHHHHHHHHHhhCCCch---HHHHHHHHHHHH-------------h-CChHHHHHHHHHHHhcccC-chhHHhHHH
Q psy3701 268 EALEFHKQALVVAPMKA---STFCCIGYIQAL-------------T-GDLDSAVNYFHKTMALKRD-DSFATTMLS 325 (342)
Q Consensus 268 ~A~~~~~~al~~~~~~~---~~~~~l~~~~~~-------------~-g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 325 (342)
+|...++-+-++.|++. ..|..+-.+... . |...+=+..+..++.++.+ ..++...+.
T Consensus 53 kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alr 128 (273)
T COG4455 53 KALAQLNLAATLSPQDTVGASLYRHLIRCEAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALR 128 (273)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHH
Confidence 99999998888888764 334444333321 1 3566667777777777665 444444443
No 435
>KOG0687|consensus
Probab=75.82 E-value=46 Score=27.82 Aligned_cols=104 Identities=13% Similarity=-0.012 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV 259 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (342)
.+++...|..|.+.|+-+.|.+.+++..+..-..+ ..-+..-....+|..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g------------------------------~kiDVvf~~iRlglf 153 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG------------------------------HKIDVVFYKIRLGLF 153 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc------------------------------cchhhHHHHHHHHHh
Confidence 45677888888888888888888888776554332 111112334455655
Q ss_pred HHHhhhHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 260 NRKLKKYEEALEFHKQALVVAPMKA---STFCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 260 ~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
|....-..+-++-.+..++..-+.. ..-...|.......++.+|-..|-.++..
T Consensus 154 y~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 154 YLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 5554444444444444444332211 11222344445556677777776666544
No 436
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=75.14 E-value=18 Score=22.84 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=31.2
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSA 78 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~ 78 (342)
+.-+...|...-..|++++|+.+|.+++ ..+..++...|+..
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~ai-----e~l~~~lk~e~d~~ 47 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGI-----DLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH-----HHHHHHHhhCCCHH
Confidence 3344457778888999999999999974 66777777777543
No 437
>KOG1920|consensus
Probab=74.81 E-value=82 Score=31.42 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHH
Q psy3701 184 HEMGVIAYQNHNYTVAENCFMEALS 208 (342)
Q Consensus 184 ~~l~~~~~~~~~~~~A~~~~~~al~ 208 (342)
..|..-+..++++-+|-+.....+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 5566666777777777776666544
No 438
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=74.52 E-value=6.4 Score=24.69 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=11.9
Q ss_pred hCCHHHHHHHHHHHHhh
Q psy3701 159 TNNARLASKFFDLALSI 175 (342)
Q Consensus 159 ~~~~~~A~~~~~~~~~~ 175 (342)
.|++++|+++|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 46777777777777653
No 439
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=74.51 E-value=42 Score=26.76 Aligned_cols=59 Identities=3% Similarity=-0.058 Sum_probs=33.9
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHHhccCCCCc-hHHHHHHHHHhh-hCCHHHHHHHHHHHH
Q psy3701 115 WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH-LPALYVGLECGL-TNNARLASKFFDLAL 173 (342)
Q Consensus 115 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~l~~~~~~-~~~~~~A~~~~~~~~ 173 (342)
+..++.+....|+|++.+.+.++++..+|.-. .-...++.+|-. .|....+...+....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 45677888888888888888888888866522 223334444322 244444444444433
No 440
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.43 E-value=19 Score=22.65 Aligned_cols=26 Identities=15% Similarity=-0.018 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701 81 WYAVGCYYYLIGRSDPARRFLGKATS 106 (342)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~a~~ 106 (342)
+...|.-+-..|++++|+.+|+++++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555556666666666655543
No 441
>PRK11619 lytic murein transglycosylase; Provisional
Probab=74.32 E-value=78 Score=29.76 Aligned_cols=215 Identities=8% Similarity=-0.154 Sum_probs=126.1
Q ss_pred HHHHHHHhCChHHHHHHHHHHhhcCCCc----HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh
Q psy3701 84 VGCYYYLIGRSDPARRFLGKATSLDKLF----LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT 159 (342)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 159 (342)
++.......+.+.|...+.+.....+-+ ..++..+|.-....+..++|...+..+..... +....-.........
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGT 325 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHc
Confidence 3444455667788888887754443322 22334444433333336677777776554332 223333344455588
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHH
Q psy3701 160 NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQ 239 (342)
Q Consensus 160 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (342)
++++.+...+...-..........+-+|..+...|+.++|...|+++.. +.+- .. ..+...+|....-....
T Consensus 326 ~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~f-----YG-~LAa~~Lg~~~~~~~~~ 397 (644)
T PRK11619 326 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRGF-----YP-MVAAQRLGEEYPLKIDK 397 (644)
T ss_pred cCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCc-----HH-HHHHHHcCCCCCCCCCC
Confidence 8998888888776554455677888999998899999999999999744 2220 00 00111111110000000
Q ss_pred hchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701 240 LGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT 310 (342)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 310 (342)
.. .........-....+..+...|+...|...+..++.. .+..-...++.+....|.++.++....++
T Consensus 398 ~~-~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 398 AP-KPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred CC-chhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 00 0000000112345677788899999999999888775 34556677888888999988888766544
No 442
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=74.01 E-value=29 Score=24.71 Aligned_cols=33 Identities=12% Similarity=-0.057 Sum_probs=17.0
Q ss_pred hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHH
Q psy3701 91 IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFA 123 (342)
Q Consensus 91 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 123 (342)
.+.....+.+++..+..++.++..+..+..+|.
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 345555555555555554444444555554444
No 443
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=72.91 E-value=9.9 Score=24.16 Aligned_cols=13 Identities=23% Similarity=0.181 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHhc
Q psy3701 128 HDQAMAAYFNAFN 140 (342)
Q Consensus 128 ~~~A~~~~~~al~ 140 (342)
|+.|.....+++.
T Consensus 5 ~~~A~~~I~kaL~ 17 (79)
T cd02679 5 YKQAFEEISKALR 17 (79)
T ss_pred HHHHHHHHHHHhh
Confidence 3344444444433
No 444
>KOG2063|consensus
Probab=72.77 E-value=97 Score=30.15 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=21.4
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHHhcc
Q psy3701 115 WLMYGHSFAVENEHDQAMAAYFNAFNL 141 (342)
Q Consensus 115 ~~~la~~~~~~g~~~~A~~~~~~al~~ 141 (342)
+..|+..|...|++++|++.+.+...-
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 567788888888888888888887763
No 445
>PRK12798 chemotaxis protein; Reviewed
Probab=71.87 E-value=67 Score=27.94 Aligned_cols=210 Identities=14% Similarity=0.009 Sum_probs=108.7
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHHhccC-CCCchHHHHHHHH-HhhhCCHHHHHHHHHHHHhhCCCCh---HHHHHHH
Q psy3701 113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLF-KGCHLPALYVGLE-CGLTNNARLASKFFDLALSIAHEDP---FVIHEMG 187 (342)
Q Consensus 113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~ 187 (342)
+.-..-|..-+-.|+-.++.+.+...-... |.....+..+... .....+..+|+..|+.+--..|... .++..--
T Consensus 113 d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi 192 (421)
T PRK12798 113 DQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSL 192 (421)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhh
Confidence 334444555555666666666655433221 2222233333222 3344566777777777666666542 2333333
Q ss_pred HHHHHhcChhHHHHHHHHHHHhhhhcCccccc-cchhhHHHHhh-hhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIA-DKWEPLLNNLG-HKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK 265 (342)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (342)
.+....|+.+++..+-.+.+.....++-.... ..+......+. +...+.+...-.....+....+|..++..-.-.|+
T Consensus 193 ~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk 272 (421)
T PRK12798 193 FIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGK 272 (421)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCc
Confidence 44456667776666666666665555300000 00000111111 00111111111122333345788999999999999
Q ss_pred HHHHHHHHHHHHhhCCC----chHHHHHHHHHHHHhCChHHHHHHHHHHH--hcccCchhHHh
Q psy3701 266 YEEALEFHKQALVVAPM----KASTFCCIGYIQALTGDLDSAVNYFHKTM--ALKRDDSFATT 322 (342)
Q Consensus 266 ~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~ 322 (342)
.+-|.-.-++++.+... ...+.+..+....-..+.++|.+.+.+.- ++.|.|.....
T Consensus 273 ~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll~ 335 (421)
T PRK12798 273 TELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRALLE 335 (421)
T ss_pred HHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHHHH
Confidence 99999999999987633 22344444444555667788877776553 34555554333
No 446
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=71.63 E-value=66 Score=27.75 Aligned_cols=54 Identities=11% Similarity=-0.209 Sum_probs=39.4
Q ss_pred HHHHHHHhCChHHHHHHHHHHhhcCCCc-----HHHHHHh--hhHHHhhccHHHHHHHHHH
Q psy3701 84 VGCYYYLIGRSDPARRFLGKATSLDKLF-----LPAWLMY--GHSFAVENEHDQAMAAYFN 137 (342)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l--a~~~~~~g~~~~A~~~~~~ 137 (342)
.+...+..++|..|...|..+.+..+.. ...+..+ |..++..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4557889999999999999998875422 2233333 4455677889999999986
No 447
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=71.49 E-value=80 Score=28.67 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=55.6
Q ss_pred HHHHHhchhccCCCChHHHHHHHHHHHH--hhhHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHhCChHHHHHHH
Q psy3701 235 DKVKQLGGEIIADKWEPLLNNLGHVNRK--LKKYEEALEFHKQALVVA-----PMKASTFCCIGYIQALTGDLDSAVNYF 307 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 307 (342)
+.+..+........++.++.+||.+-.- ...-..++..|.+++... ..+...|..+|-.+.+.+++.+|+..+
T Consensus 262 ~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~W 341 (618)
T PF05053_consen 262 DLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSW 341 (618)
T ss_dssp HHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHH
Confidence 4444444455556667788888876542 233456788888887642 334566788999999999999999999
Q ss_pred HHHHhc------ccCchhHHhHH
Q psy3701 308 HKTMAL------KRDDSFATTML 324 (342)
Q Consensus 308 ~~al~~------~p~~~~~~~~l 324 (342)
.++-.. ..++.+++..+
T Consensus 342 a~aa~Vi~~YnY~reDeEiYKEf 364 (618)
T PF05053_consen 342 AEAADVIRKYNYSREDEEIYKEF 364 (618)
T ss_dssp HHHHHHHTTSB--GGGHHHHHHH
T ss_pred HHHHHHHHHcccCccHHHHHHHH
Confidence 887543 24455555443
No 448
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=71.37 E-value=14 Score=29.20 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=24.7
Q ss_pred HHHHHHHHHH---------HhcChhHHHHHHHHHHHhhhhcC
Q psy3701 182 VIHEMGVIAY---------QNHNYTVAENCFMEALSKVKQLG 214 (342)
Q Consensus 182 ~~~~l~~~~~---------~~~~~~~A~~~~~~al~~~~~~~ 214 (342)
.+...|..+. ..++...|+.+++++++++|..+
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 3455666663 44677889999999999999885
No 449
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=70.60 E-value=8.7 Score=30.24 Aligned_cols=21 Identities=24% Similarity=0.107 Sum_probs=10.7
Q ss_pred HHhCChHHHHHHHHHHhhcCC
Q psy3701 89 YLIGRSDPARRFLGKATSLDK 109 (342)
Q Consensus 89 ~~~~~~~~A~~~~~~a~~~~~ 109 (342)
+..|+++.|+++..-+++.+-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCC
Confidence 444555555555555555443
No 450
>KOG0276|consensus
Probab=69.40 E-value=93 Score=28.60 Aligned_cols=80 Identities=15% Similarity=0.080 Sum_probs=51.7
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q psy3701 114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN 193 (342)
Q Consensus 114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (342)
.....+..+..+|-.++|++ +.++ +.-. -.+..+.|+++.|.+...++ ++..-|..+|......
T Consensus 616 ~rt~va~Fle~~g~~e~AL~-------~s~D-~d~r---Felal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALE-------LSTD-PDQR---FELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSA 679 (794)
T ss_pred hhhhHHhHhhhccchHhhhh-------cCCC-hhhh---hhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhc
Confidence 34455555666665555554 3333 1122 23345677888887765554 4566788899999999
Q ss_pred cChhHHHHHHHHHHHh
Q psy3701 194 HNYTVAENCFMEALSK 209 (342)
Q Consensus 194 ~~~~~A~~~~~~al~~ 209 (342)
+++..|.+++.++...
T Consensus 680 ~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 680 GELPLASECFLRARDL 695 (794)
T ss_pred ccchhHHHHHHhhcch
Confidence 9999999988887554
No 451
>PF15469 Sec5: Exocyst complex component Sec5
Probab=69.34 E-value=40 Score=25.52 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=13.7
Q ss_pred HHhcChhHHHHHHHHHHHhhhh
Q psy3701 191 YQNHNYTVAENCFMEALSKVKQ 212 (342)
Q Consensus 191 ~~~~~~~~A~~~~~~al~~~~~ 212 (342)
...|+|+.++..|.++..+...
T Consensus 97 i~~~dy~~~i~dY~kak~l~~~ 118 (182)
T PF15469_consen 97 IKKGDYDQAINDYKKAKSLFEK 118 (182)
T ss_pred HHcCcHHHHHHHHHHHHHHHHH
Confidence 3556777777777666655443
No 452
>PRK12798 chemotaxis protein; Reviewed
Probab=68.76 E-value=79 Score=27.52 Aligned_cols=165 Identities=15% Similarity=-0.006 Sum_probs=103.7
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHhCChHHHHHHHHHHhhcCCCcH---
Q psy3701 37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGC-YYYLIGRSDPARRFLGKATSLDKLFL--- 112 (342)
Q Consensus 37 ~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~~~~~--- 112 (342)
..|-..+..|+-.++...+.... -...|...-.+..|.. ......+..+|+.+|+.+--..|...
T Consensus 117 ~~g~laY~~Gr~~~a~~~La~i~-----------~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEE 185 (421)
T PRK12798 117 ADGALAYLSGRGREARKLLAGVA-----------PEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEE 185 (421)
T ss_pred HHHHHHHHcCCHHHHHHHhhcCC-----------hhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHH
Confidence 55555666677777777666642 1222333334444433 34455688999999999988888642
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHH---HHHHHhhhCCHHHHHHHHHHHHhh-CCC-ChHHHHHHH
Q psy3701 113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY---VGLECGLTNNARLASKFFDLALSI-AHE-DPFVIHEMG 187 (342)
Q Consensus 113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~-~~~-~~~~~~~l~ 187 (342)
.++..-..+....|+.++...+-.+.+.....++.+... .+......++-.. ...+..++.. +|. ...+|..++
T Consensus 186 AALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d~~~q~~lYL~iA 264 (421)
T PRK12798 186 AALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFMDPERQRELYLRIA 264 (421)
T ss_pred HHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhcCchhHHHHHHHHH
Confidence 234444445678899999888888888877766654333 2223333332211 1224555543 332 346788889
Q ss_pred HHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 188 VIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
..-.-.|+.+-|.-.-++++.+....
T Consensus 265 R~Ali~Gk~~lA~~As~~A~~L~~~~ 290 (421)
T PRK12798 265 RAALIDGKTELARFASERALKLADPD 290 (421)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999887544
No 453
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=68.16 E-value=38 Score=23.69 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc---------------hHHHHHHHHHHHHhCChHHHHHHHHHH----Hhc
Q psy3701 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMK---------------ASTFCCIGYIQALTGDLDSAVNYFHKT----MAL 313 (342)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~a----l~~ 313 (342)
+..+|....+.+++-.++-.|++|+....+- .....++|..+..+|+.+-.++|++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567888888888888888888887653211 234578999999999999999998654 556
Q ss_pred ccCch
Q psy3701 314 KRDDS 318 (342)
Q Consensus 314 ~p~~~ 318 (342)
-|.-+
T Consensus 84 iPQCp 88 (140)
T PF10952_consen 84 IPQCP 88 (140)
T ss_pred ccCCC
Confidence 66655
No 454
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.85 E-value=66 Score=26.30 Aligned_cols=88 Identities=10% Similarity=0.078 Sum_probs=52.1
Q ss_pred HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 267 (342)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (342)
.++.++++|.+++...-+-.+.-.+-| +.+.-.-...|.+.|+..
T Consensus 91 QALAEmnrWreVLsWvlqyYq~pEklP-----------------------------------pkIleLCILLysKv~Ep~ 135 (309)
T PF07163_consen 91 QALAEMNRWREVLSWVLQYYQVPEKLP-----------------------------------PKILELCILLYSKVQEPA 135 (309)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCcccCC-----------------------------------HHHHHHHHHHHHHhcCHH
Confidence 356677888888777666655433333 345555556677778877
Q ss_pred HHHHHHHHHHhhCCCch--HHHHHHHH-----HHHHhCChHHHHHHHHHHH
Q psy3701 268 EALEFHKQALVVAPMKA--STFCCIGY-----IQALTGDLDSAVNYFHKTM 311 (342)
Q Consensus 268 ~A~~~~~~al~~~~~~~--~~~~~l~~-----~~~~~g~~~~A~~~~~~al 311 (342)
...+.-...+. +|+|. .-+..++. ++.=+|.+++|.+......
T Consensus 136 amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~gs~ 185 (309)
T PF07163_consen 136 AMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVVGSA 185 (309)
T ss_pred HHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHHhccccHHHHHHHHhcCC
Confidence 77776666554 34332 22333443 3445688888887764333
No 455
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=67.77 E-value=32 Score=23.39 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhcc
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE 127 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 127 (342)
.......|......||+..|.+...++-+..+..+-.+..-+.+-..+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 33445567777788899999999988877655555555555555555543
No 456
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=67.64 E-value=17 Score=22.23 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALV 278 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 278 (342)
.+...|.-.-..|++++|+.+|.++++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445566666677777777777777654
No 457
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=67.40 E-value=68 Score=26.28 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHHh----------------------CChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701 268 EALEFHKQALVVAPMKASTFCCIGYIQALT----------------------GDLDSAVNYFHKTMALKRDDSFATTMLS 325 (342)
Q Consensus 268 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~----------------------g~~~~A~~~~~~al~~~p~~~~~~~~l~ 325 (342)
.-...++.-++..|++..++..+|..+... .-.+.|...+.++++++|....+...+.
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 345556666677788877777777766542 1246788888899999999888888877
Q ss_pred HHHHHhh
Q psy3701 326 YVIEQLI 332 (342)
Q Consensus 326 ~~~~~~~ 332 (342)
.+-..++
T Consensus 141 ~~s~~fg 147 (277)
T PF13226_consen 141 NISAYFG 147 (277)
T ss_pred HHHhhcC
Confidence 6665544
No 458
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=66.97 E-value=18 Score=25.24 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=14.9
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 290 IGYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 290 l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
+|..+...|++++|..+|-+|+...|+-.
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 45555555555555555555555555433
No 459
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=66.83 E-value=14 Score=18.63 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHh----CChHHHHHHHHHHhh
Q psy3701 80 AWYAVGCYYYLI----GRSDPARRFLGKATS 106 (342)
Q Consensus 80 ~~~~l~~~~~~~----~~~~~A~~~~~~a~~ 106 (342)
+.+.+|.+|..- .+..+|..+++++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 445555555432 255666666666544
No 460
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=65.50 E-value=17 Score=18.70 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHhh
Q psy3701 94 SDPARRFLGKATS 106 (342)
Q Consensus 94 ~~~A~~~~~~a~~ 106 (342)
.++|..+|+++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4555555555543
No 461
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=64.14 E-value=80 Score=25.90 Aligned_cols=36 Identities=11% Similarity=-0.132 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChh
Q psy3701 162 ARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT 197 (342)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (342)
.+.|...+.+++.++|....+...+-.+-...|..+
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 456777778888888887777777666666666543
No 462
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=63.90 E-value=17 Score=17.93 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=15.1
Q ss_pred HHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 304 VNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 304 ~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
+++..+++..+|.+..++.....+++.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 344455556666666666655555544
No 463
>KOG0686|consensus
Probab=63.69 E-value=1e+02 Score=26.84 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHH
Q psy3701 181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN 260 (342)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (342)
.++..+|.-|...|+.+.|++.|-++........ .....+.++..+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k---------------------------------hvInm~ln~i~VS 197 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK---------------------------------HVINMCLNLILVS 197 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH---------------------------------HHHHHHHHHHHHH
Confidence 4567788888888999999988888655443321 1145666666677
Q ss_pred HHhhhHHHHHHHHHHHHhhC-------C-CchHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701 261 RKLKKYEEALEFHKQALVVA-------P-MKASTFCCIGYIQALTGDLDSAVNYFHKTM 311 (342)
Q Consensus 261 ~~~g~~~~A~~~~~~al~~~-------~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 311 (342)
..+|+|..-..+..++.+.- + -.+.+...-|.+...++++..|..+|-.+.
T Consensus 198 I~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 198 IYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77777776666666665431 0 012344455666666778888888876654
No 464
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.85 E-value=86 Score=25.84 Aligned_cols=34 Identities=3% Similarity=-0.132 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
.+++.++|..|.+.++.+.+.+.+.+.++.+-..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st 148 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST 148 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 5678899999999999999999888887765544
No 465
>KOG0687|consensus
Probab=62.74 E-value=93 Score=26.15 Aligned_cols=101 Identities=11% Similarity=0.067 Sum_probs=54.5
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC------CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC---hHH
Q psy3701 112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG------CHLPALYVGLECGLTNNARLASKFFDLALSIAHED---PFV 182 (342)
Q Consensus 112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ 182 (342)
.+++...|..|++.|+-+.|.+.+.+..+..-. -......+|..|....-..+.++..+..++...+- ...
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 456777777777777777777777766554321 11222335555555544444444444433332211 112
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhh
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 212 (342)
-...|...+...++.+|-..|-.++.....
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 233455555666777777777666654433
No 466
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=62.67 E-value=9.4 Score=32.55 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC
Q psy3701 62 DLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR 93 (342)
Q Consensus 62 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 93 (342)
+|+..++++. +.++|++|..+|.+++.+|+
T Consensus 336 ~Al~yL~kA~--d~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 336 KALEYLKKAQ--DEDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHH--HS--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh--ccCChhHHHHHHHHHhhhhc
Confidence 3344444433 34567778888888877765
No 467
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=61.77 E-value=23 Score=22.36 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701 251 PLLNNLGHVNRKLKKYEEALEFHKQALVV 279 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 279 (342)
..+...|.-.-..|+|++|+.+|..+++.
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555666777788888888888887753
No 468
>KOG4563|consensus
Probab=61.50 E-value=47 Score=28.17 Aligned_cols=67 Identities=15% Similarity=0.069 Sum_probs=49.7
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHhCChHHHHHHH
Q psy3701 30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELV-DLYPDSAIAWYAVGCYYYLIGRSDPARRFL 101 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 101 (342)
....-+...|+-.+..+++++|.+.|..+. .++.+.. ...-++..+++..|..++..++.+...-.+
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~-----~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEAT-----ELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHH-----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555678999999999999999999864 4444443 334456789999999999998877665443
No 469
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=60.60 E-value=19 Score=30.75 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhcc
Q psy3701 95 DPARRFLGKATSLDKLFLPAWLMYGHSFAVENE 127 (342)
Q Consensus 95 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 127 (342)
..|++++++|.. .+.|..|..+|.+++..|+
T Consensus 335 ~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 335 KKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 344555555433 3345555555555555554
No 470
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=60.51 E-value=33 Score=23.99 Aligned_cols=35 Identities=34% Similarity=0.298 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST 286 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 286 (342)
--..+|..+...|++++|..+|-+|+...|+-...
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 44568999999999999999999999999875543
No 471
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=59.71 E-value=53 Score=22.33 Aligned_cols=46 Identities=9% Similarity=0.035 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC
Q psy3701 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG 298 (342)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 298 (342)
....|.+-...|++..|.+...++-+..+..+-.+..-+.+-..+|
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3444555555566666666666665443333333333344444433
No 472
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=59.32 E-value=26 Score=22.09 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALV 278 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 278 (342)
-+...|.-.-..|++++|+.+|.++++
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445556666777777777777777664
No 473
>KOG1497|consensus
Probab=59.11 E-value=1.1e+02 Score=25.71 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=66.9
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYP--------DSAIAWYAVGCYYYLIGRSDPARRFLG 102 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p--------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 102 (342)
-..+...++.+|.+.+++..|...+... ..+. .....+..+|..|...++..+|..+..
T Consensus 102 v~~irl~LAsiYE~Eq~~~~aaq~L~~I-------------~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~in 168 (399)
T KOG1497|consen 102 VASIRLHLASIYEKEQNWRDAAQVLVGI-------------PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYIN 168 (399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcc-------------CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3456677999999999999998877653 2222 123466788999999999999999998
Q ss_pred HHhh--cCCCcHHHHH----HhhhHHHhhccHHHHHHHHHHHhc
Q psy3701 103 KATS--LDKLFLPAWL----MYGHSFAVENEHDQAMAAYFNAFN 140 (342)
Q Consensus 103 ~a~~--~~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~al~ 140 (342)
++-- .+..+..... ..|+++-..++|-+|...|.+...
T Consensus 169 RaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 169 RASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7632 3345554433 345666667777777766665543
No 474
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=58.91 E-value=1.2e+02 Score=28.02 Aligned_cols=74 Identities=9% Similarity=0.008 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHH
Q psy3701 61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYF 136 (342)
Q Consensus 61 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 136 (342)
+.+..+.+.-+..........+..+..+-..+..++|-.+|++.+..+|+ +.++..+.-+...|-..+|...++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 25 AQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 33334444433334445556666777777788888888888888888877 566777777888888777777776
No 475
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=56.47 E-value=43 Score=20.37 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=27.8
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy3701 34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD 76 (342)
Q Consensus 34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~ 76 (342)
.+...|...-..|++++|+.+|.++. ..+..++...|+
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai-----~~l~~~~~~~~~ 44 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAI-----EYLMQALKSESN 44 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH-----HHHHHHHHHSTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHHhccCCC
Confidence 34457778888999999999999864 556666665543
No 476
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=55.86 E-value=27 Score=17.73 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHhhCCCchHHHHH
Q psy3701 265 KYEEALEFHKQALVVAPMKASTFCC 289 (342)
Q Consensus 265 ~~~~A~~~~~~al~~~~~~~~~~~~ 289 (342)
+++.|...|++.+...|+ +..|..
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHH
Confidence 345566666666655543 334443
No 477
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=55.85 E-value=1.7e+02 Score=26.92 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHH-hhhHHHHHHHHHHHHhh---------CCCchHHHHHHHHHHH
Q psy3701 250 EPLLNNLGHVNRK-LKKYEEALEFHKQALVV---------APMKASTFCCIGYIQA 295 (342)
Q Consensus 250 ~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~---------~~~~~~~~~~l~~~~~ 295 (342)
..+|..+..++.+ .++++.-.+..+.++++ ...+..+|..+.....
T Consensus 411 ~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~ 466 (547)
T PF14929_consen 411 HPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLP 466 (547)
T ss_pred chHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhh
Confidence 3588888888877 55565444455555421 1234456665555544
No 478
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=55.71 E-value=47 Score=23.49 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=20.2
Q ss_pred HhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701 296 LTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE 329 (342)
Q Consensus 296 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 329 (342)
..-+.+.|...|+..++.+|++..++..+...++
T Consensus 88 aKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 88 AKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp TTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 3345566777777777777777776666655554
No 479
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=55.71 E-value=1.3e+02 Score=27.67 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701 60 LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLG 102 (342)
Q Consensus 60 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 102 (342)
.+.+-.+|+.++..+|+ ..++..+.-+.+.|-...|...++
T Consensus 58 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 58 TERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 47888999999999998 667888888889998888888877
No 480
>KOG2062|consensus
Probab=55.23 E-value=1.9e+02 Score=27.47 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q psy3701 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKAT 105 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 105 (342)
.|+...+-.....+|+.+|+|++|+.+.-++-
T Consensus 55 F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag 86 (929)
T KOG2062|consen 55 FPERQLAALLASKVYYYLGEYEDALEYALRAG 86 (929)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44455566778899999999999999987773
No 481
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.10 E-value=28 Score=21.96 Aligned_cols=18 Identities=22% Similarity=0.148 Sum_probs=8.8
Q ss_pred HHhCChHHHHHHHHHHhh
Q psy3701 89 YLIGRSDPARRFLGKATS 106 (342)
Q Consensus 89 ~~~~~~~~A~~~~~~a~~ 106 (342)
-..|++++|+.+|..+++
T Consensus 17 D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 17 DQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 344555555555554443
No 482
>KOG1920|consensus
Probab=54.91 E-value=2.4e+02 Score=28.49 Aligned_cols=16 Identities=6% Similarity=0.054 Sum_probs=8.5
Q ss_pred HhhccHHHHHHHHHHH
Q psy3701 123 AVENEHDQAMAAYFNA 138 (342)
Q Consensus 123 ~~~g~~~~A~~~~~~a 138 (342)
...++|++|+..+.++
T Consensus 891 ~~L~ry~~AL~hLs~~ 906 (1265)
T KOG1920|consen 891 DYLKRYEDALSHLSEC 906 (1265)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3455566666555443
No 483
>KOG2758|consensus
Probab=54.91 E-value=1.3e+02 Score=25.30 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=38.2
Q ss_pred cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHH--hhcCCC--cHHHHHHhhhHHHhhccHHHHHHHHHHHhcc
Q psy3701 73 LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKA--TSLDKL--FLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141 (342)
Q Consensus 73 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 141 (342)
..|+..++++..+...+.-|+|..|..++-.. +-.+|+ ...+....-..-.-..+++.|++-+.+.-+.
T Consensus 124 f~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 124 FTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred CCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34556677777777777777777777665433 222222 2222222222334456677777766665544
No 484
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=54.78 E-value=1.2e+02 Score=27.74 Aligned_cols=30 Identities=30% Similarity=0.239 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVV 279 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 279 (342)
.--|..+|..+.+.+++.+|+..+-++-..
T Consensus 318 vYPYty~gg~~yR~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 318 VYPYTYLGGYYYRHKRYREALRSWAEAADV 347 (618)
T ss_dssp SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccceehhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888899999999999888877543
No 485
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.75 E-value=74 Score=24.19 Aligned_cols=47 Identities=13% Similarity=0.003 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHH
Q psy3701 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS 302 (342)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (342)
....++++.|.+++|.+.+++..+ +|++......|..+-.....+..
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~ 162 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHP 162 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccH
Confidence 345678899999999999999988 77776666666665555444433
No 486
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=53.48 E-value=1.3e+02 Score=25.06 Aligned_cols=135 Identities=10% Similarity=-0.030 Sum_probs=0.0
Q ss_pred hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc----------
Q psy3701 72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL---------- 141 (342)
Q Consensus 72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------- 141 (342)
...|-..+....+-..+ ..+++.+.++..++.+..+|-..+.++..+.+....| ++.+....+..+..
T Consensus 94 ~L~~p~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~ 171 (301)
T TIGR03362 94 RLAPPPADRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLE 171 (301)
T ss_pred cCCCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhh
Q ss_pred ----------------------CC---------------CCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHH
Q psy3701 142 ----------------------FK---------------GCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIH 184 (342)
Q Consensus 142 ----------------------~~---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 184 (342)
.+ ........-+......+..+.|+..++..+...++.-.-++
T Consensus 172 L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~ 251 (301)
T TIGR03362 172 LKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFH 251 (301)
T ss_pred cccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHH
Q ss_pred ---HHHHHHHHhcChhHHHHHHHHHHH
Q psy3701 185 ---EMGVIAYQNHNYTVAENCFMEALS 208 (342)
Q Consensus 185 ---~l~~~~~~~~~~~~A~~~~~~al~ 208 (342)
.++.++...|.++-|...|+...+
T Consensus 252 ~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 252 WRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
No 487
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=53.32 E-value=4.4 Score=36.71 Aligned_cols=112 Identities=13% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCC-cHHHHHHhhhHHHhhccHHHHHHHHHHHh--ccCCC-CchHHHHHHHHHhhhCCHHHHHHHHHHH
Q psy3701 97 ARRFLGKATSLDKL-FLPAWLMYGHSFAVENEHDQAMAAYFNAF--NLFKG-CHLPALYVGLECGLTNNARLASKFFDLA 172 (342)
Q Consensus 97 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 172 (342)
|..++.++-...+. .......-+..+...|++..|...+.+.- .+.|. ........+.+....|++++|+..+...
T Consensus 8 A~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~ 87 (536)
T PF04348_consen 8 AEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQ 87 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccC
Confidence 33444444444332 23345556678888888888888887665 22332 2233445677777788888888877641
Q ss_pred --HhhCCC-ChHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q psy3701 173 --LSIAHE-DPFVIHEMGVIAYQNHNYTVAENCFMEALS 208 (342)
Q Consensus 173 --~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 208 (342)
..+.+. ....+...+.++...|++-+|...+-..-.
T Consensus 88 ~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~ 126 (536)
T PF04348_consen 88 DLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALDP 126 (536)
T ss_dssp ---------------------------------------
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 111111 123445567777777777777665544433
No 488
>KOG0686|consensus
Probab=51.34 E-value=1.7e+02 Score=25.58 Aligned_cols=103 Identities=15% Similarity=0.018 Sum_probs=69.2
Q ss_pred hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchh
Q psy3701 147 LPALYVGLECGLTNNARLASKFFDLALSIAHED---PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE 223 (342)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 223 (342)
.++..+|.-|...|+++.|++.|-++-...... ...+.++-.+-...|+|..-..+-.++...-..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~--------- 221 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE--------- 221 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh---------
Confidence 355668888999999999999999976554433 34567777888888999888887777765410000
Q ss_pred hHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy3701 224 PLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 277 (342)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 277 (342)
.....-.+.+...-|.+...+++|..|..+|-.+.
T Consensus 222 -------------------~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 222 -------------------NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred -------------------hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 00000012355566677777789999998887654
No 489
>KOG0128|consensus
Probab=51.34 E-value=2.3e+02 Score=27.27 Aligned_cols=252 Identities=9% Similarity=-0.055 Sum_probs=138.5
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHH---hhccHHHHHHHHHHHhccCCC
Q psy3701 68 HELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFA---VENEHDQAMAAYFNAFNLFKG 144 (342)
Q Consensus 68 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~ 144 (342)
+..+..++.+...+..|-.+++..|++++-...-.++.++.|..+..|.....-.. ..++-.++...|++++...-
T Consensus 103 ~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~- 181 (881)
T KOG0128|consen 103 EEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN- 181 (881)
T ss_pred HHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc-
Confidence 33457788888888899999999999998888888888888888888776554333 23667788889999886532
Q ss_pred CchHHHHHHHH-------HhhhCCHHHHHHHHHHHHhhCCC-------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhh
Q psy3701 145 CHLPALYVGLE-------CGLTNNARLASKFFDLALSIAHE-------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKV 210 (342)
Q Consensus 145 ~~~~~~~l~~~-------~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 210 (342)
++..|...+.. +...++++.-...|.+++..-.. ....+...-..+...-..++-+.++...+...
T Consensus 182 ~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 182 SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 23344433332 34557788888889888864321 12334445555555555566777777766654
Q ss_pred hhcCccccccchhhHH---------HHhhhhHHH---HHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy3701 211 KQLGGEIIADKWEPLL---------NNLGHKAED---KVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 277 (342)
Q Consensus 211 ~~~~~~~~~~~~~~~~---------~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 277 (342)
-+.. .....|.... .+....+.. ....+.. ....+.....|..+..-....|....-...+++++
T Consensus 262 ~D~~--~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~ 339 (881)
T KOG0128|consen 262 LDED--TRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAV 339 (881)
T ss_pred chhh--hhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 1111 1111111000 000011110 0000111 11122222344444444455555555555666666
Q ss_pred hhCCCchHHHHHHHHHHH-HhCChHHHHHHHHHHHhcccCchhHHh
Q psy3701 278 VVAPMKASTFCCIGYIQA-LTGDLDSAVNYFHKTMALKRDDSFATT 322 (342)
Q Consensus 278 ~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~ 322 (342)
...+.+...|...|...- .++-.+.+...+.++++..|-....+.
T Consensus 340 ~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~ 385 (881)
T KOG0128|consen 340 AEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWK 385 (881)
T ss_pred HhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHH
Confidence 655555555555554332 233344455555666666555444443
No 490
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.33 E-value=51 Score=19.69 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701 284 ASTFCCIGYIQALTGDLDSAVNYFHKTMA 312 (342)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 312 (342)
..-+...-..+..+|++++|.++..+...
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445555666777888888777776654
No 491
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=50.97 E-value=85 Score=22.07 Aligned_cols=81 Identities=14% Similarity=0.038 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
+..+|...++.+++-.++-.|++|+.+..+-... ....+.+. -...+....++|..+..
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~--------~~~el~dl-------------l~i~VisCHNLA~FWR~ 62 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDES--------NEIELEDL-------------LTISVISCHNLADFWRS 62 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccc--------ccccHHHH-------------HHHHHHHHhhHHHHHHH
Confidence 4577888888999999999999998876543100 00000000 00113567889999999
Q ss_pred hhhHHHHHHHHHHHH----hhCCCch
Q psy3701 263 LKKYEEALEFHKQAL----VVAPMKA 284 (342)
Q Consensus 263 ~g~~~~A~~~~~~al----~~~~~~~ 284 (342)
+|+.+-.+++++-|- .+-|+.+
T Consensus 63 ~gd~~yELkYLqlASE~VltLiPQCp 88 (140)
T PF10952_consen 63 QGDSDYELKYLQLASEKVLTLIPQCP 88 (140)
T ss_pred cCChHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999987654 4456544
No 492
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=49.69 E-value=1.5e+02 Score=24.44 Aligned_cols=153 Identities=9% Similarity=-0.020 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----h----CChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhh--ccHHH
Q psy3701 61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYL----I----GRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE--NEHDQ 130 (342)
Q Consensus 61 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~----~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--g~~~~ 130 (342)
..++++...++..+|....+|...=.+... . --++.-+.++..++.-+|.+-..|...-.++... .++..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 455666677788888877777665554443 1 1246667888899999999998888776666554 56778
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHH------hhhCCHHHHHHHHHHHHhhCCCChHHHHHH---HHHHHHhcC------
Q psy3701 131 AMAAYFNAFNLFKGCHLPALYVGLEC------GLTNNARLASKFFDLALSIAHEDPFVIHEM---GVIAYQNHN------ 195 (342)
Q Consensus 131 A~~~~~~al~~~~~~~~~~~~l~~~~------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~------ 195 (342)
-+...++.++.++.+...|.+.-.+. .....+..-.++-..++..++.+..+|... -...+..|+
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~ 208 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKY 208 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHH
Confidence 88888999999999887776643333 333445555666667888899999888766 222333443
Q ss_pred hhHHHHHHHHHHHhhhhc
Q psy3701 196 YTVAENCFMEALSKVKQL 213 (342)
Q Consensus 196 ~~~A~~~~~~al~~~~~~ 213 (342)
+++-+++.-.++-.+|++
T Consensus 209 l~~eL~~i~~~if~~p~~ 226 (328)
T COG5536 209 LEKELEYIFDKIFTDPDN 226 (328)
T ss_pred HHHHHHHHHhhhhcCccc
Confidence 334444555555556665
No 493
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.91 E-value=92 Score=21.91 Aligned_cols=112 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhcCC---CcHHHHHHhhhHHHhh----ccHHHHHHHHHHHhccCCC-----CchHHHHHHHHHhhhCC
Q psy3701 94 SDPARRFLGKATSLDK---LFLPAWLMYGHSFAVE----NEHDQAMAAYFNAFNLFKG-----CHLPALYVGLECGLTNN 161 (342)
Q Consensus 94 ~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~~~~~ 161 (342)
.++-...|++.+.... +..+.|.....-.... +....-...+++++....+ +..-+..+-..|...-+
T Consensus 1 ~~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~ 80 (126)
T PF08311_consen 1 LEQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS 80 (126)
T ss_dssp -HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS
T ss_pred CHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc
Q ss_pred HHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHH
Q psy3701 162 ARLASKFFDLALS--IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEAL 207 (342)
Q Consensus 162 ~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 207 (342)
++.++|..+.. +....+..|...|..+...|++++|.+.|+.++
T Consensus 81 --~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 --DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp --HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
No 494
>KOG4151|consensus
Probab=47.21 E-value=66 Score=30.30 Aligned_cols=101 Identities=12% Similarity=-0.022 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHh--CChHHHHHHHHHHhhcCCCcHHHHHHhhhHHH
Q psy3701 50 LAADCYKGALLADLFKLAHELVDLYPD----SAIAWYAVGCYYYLI--GRSDPARRFLGKATSLDKLFLPAWLMYGHSFA 123 (342)
Q Consensus 50 ~A~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 123 (342)
+.-..|++..+..+..-+...+...|. ......+.+.++... +++.+++.-..-++...|....++...+.+|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 334456666666665555555555552 344556666666654 58888888888888899988888888889999
Q ss_pred hhccHHHHHHHHHHHhccCCCCchHHH
Q psy3701 124 VENEHDQAMAAYFNAFNLFKGCHLPAL 150 (342)
Q Consensus 124 ~~g~~~~A~~~~~~al~~~~~~~~~~~ 150 (342)
..+.++-|++...-.....|.+..+..
T Consensus 139 al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 999999999888888888888755444
No 495
>KOG0292|consensus
Probab=46.31 E-value=1.5e+02 Score=28.86 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=27.4
Q ss_pred CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701 76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSL 107 (342)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 107 (342)
++++.|..||.....+|+.+-|..+|++.-..
T Consensus 670 dd~d~w~rLge~Al~qgn~~IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 670 DDKDVWERLGEEALRQGNHQIAEMCYQRTKNF 701 (1202)
T ss_pred CcHHHHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 57889999999999999999999999886443
No 496
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=44.93 E-value=49 Score=21.05 Aligned_cols=27 Identities=15% Similarity=0.006 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALV 278 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 278 (342)
.+...|..+-..|+.++|+.+|++++.
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 344445555555666666666666554
No 497
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=44.57 E-value=77 Score=19.74 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=27.2
Q ss_pred HHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy3701 35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD 76 (342)
Q Consensus 35 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~ 76 (342)
+...|......|++++|+.+|.++. ..+...+...|+
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~-----e~l~~~~~~~~~ 47 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAI-----EYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHhccCCC
Confidence 3446777778899999999999974 555556666654
No 498
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=43.32 E-value=85 Score=22.26 Aligned_cols=32 Identities=16% Similarity=0.046 Sum_probs=16.4
Q ss_pred HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhh
Q psy3701 89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGH 120 (342)
Q Consensus 89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 120 (342)
+..-+.+.|..+|+..++..|++..++..+..
T Consensus 87 iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~ 118 (139)
T PF12583_consen 87 IAKLEPENAEQVYEELLEAHPDHLPAHLAMIQ 118 (139)
T ss_dssp HTTS-HHHHHHHHHHHHHH-TT-THHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence 33444555666666666666666655555443
No 499
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.28 E-value=1.5e+02 Score=22.68 Aligned_cols=36 Identities=14% Similarity=-0.099 Sum_probs=20.5
Q ss_pred HHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhH
Q psy3701 85 GCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHS 121 (342)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 121 (342)
..++.+.|.+++|.+.+++... +|++......|..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 3455666677777777666666 55544444444433
No 500
>KOG4521|consensus
Probab=42.47 E-value=3.9e+02 Score=27.24 Aligned_cols=74 Identities=8% Similarity=-0.043 Sum_probs=38.8
Q ss_pred hHHHhhccHHHHHHHHHHHhccCCCCc----hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHH
Q psy3701 120 HSFAVENEHDQAMAAYFNAFNLFKGCH----LPALYVGLECGLTNNARLASKFFDLALSIAHEDP---FVIHEMGVIAYQ 192 (342)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 192 (342)
+++..-+-.+.+.+...+|++.-|.+. .....+-.-+...|.+.+|.+.+ -.+|+.. ..+..+-.++++
T Consensus 991 rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 991 RLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHh
Confidence 344445556666666666666544422 22223344455667777665433 3345432 345556666666
Q ss_pred hcChh
Q psy3701 193 NHNYT 197 (342)
Q Consensus 193 ~~~~~ 197 (342)
.|+++
T Consensus 1067 cg~l~ 1071 (1480)
T KOG4521|consen 1067 CGELE 1071 (1480)
T ss_pred ccchH
Confidence 66653
Done!