Query psy3701
Match_columns 342
No_of_seqs 805 out of 1720
Neff 11.7
Searched_HMMs 29240
Date Fri Aug 16 23:23:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-35 6.1E-40 252.8 32.4 298 31-331 66-386 (388)
2 3hym_B Cell division cycle pro 100.0 5.2E-35 1.8E-39 244.0 33.0 282 33-341 23-327 (330)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.1E-34 1E-38 245.1 34.7 297 32-331 33-352 (388)
4 3ieg_A DNAJ homolog subfamily 100.0 5.2E-33 1.8E-37 234.5 37.8 289 32-333 37-355 (359)
5 2h6f_A Protein farnesyltransfe 100.0 3.6E-34 1.2E-38 241.4 27.1 256 30-334 95-369 (382)
6 4eqf_A PEX5-related protein; a 100.0 4.6E-34 1.6E-38 242.0 26.9 254 31-332 64-341 (365)
7 2y4t_A DNAJ homolog subfamily 100.0 2.7E-32 9.3E-37 237.5 36.2 302 30-332 24-377 (450)
8 1fch_A Peroxisomal targeting s 100.0 1E-32 3.6E-37 233.8 30.8 253 32-333 64-345 (368)
9 2xpi_A Anaphase-promoting comp 100.0 4E-32 1.4E-36 244.8 35.1 270 30-329 303-595 (597)
10 3cv0_A Peroxisome targeting si 100.0 8E-32 2.7E-36 224.4 29.4 255 31-333 20-301 (327)
11 2pl2_A Hypothetical conserved 100.0 1.5E-32 5.3E-37 215.1 22.2 201 75-312 2-213 (217)
12 3u4t_A TPR repeat-containing p 100.0 2.1E-32 7E-37 222.2 22.8 252 31-331 2-268 (272)
13 3hym_B Cell division cycle pro 100.0 3.1E-31 1.1E-35 221.2 30.0 250 48-333 26-285 (330)
14 3uq3_A Heat shock protein STI1 100.0 1.2E-31 4E-36 215.9 26.0 240 31-327 4-256 (258)
15 2h6f_A Protein farnesyltransfe 100.0 8E-32 2.7E-36 227.1 23.1 225 71-332 90-323 (382)
16 3ieg_A DNAJ homolog subfamily 100.0 6.2E-30 2.1E-34 215.6 32.5 287 31-332 2-320 (359)
17 2xpi_A Anaphase-promoting comp 100.0 5.8E-30 2E-34 230.6 30.8 284 33-332 273-564 (597)
18 2y4t_A DNAJ homolog subfamily 100.0 1.9E-29 6.5E-34 219.5 32.8 282 48-332 30-343 (450)
19 2gw1_A Mitochondrial precursor 100.0 8.9E-30 3E-34 225.2 29.8 257 29-328 234-493 (514)
20 3fp2_A TPR repeat-containing p 100.0 9.4E-30 3.2E-34 226.3 29.8 285 30-331 23-391 (537)
21 3fp2_A TPR repeat-containing p 100.0 3.1E-29 1E-33 223.0 32.0 250 32-324 243-502 (537)
22 2pl2_A Hypothetical conserved 100.0 2.4E-30 8.1E-35 202.7 21.9 197 32-277 5-212 (217)
23 2gw1_A Mitochondrial precursor 100.0 1.3E-29 4.4E-34 224.1 29.3 217 112-332 237-463 (514)
24 1fch_A Peroxisomal targeting s 100.0 1.7E-30 5.8E-35 220.2 22.4 246 40-332 33-299 (368)
25 4eqf_A PEX5-related protein; a 100.0 1.4E-30 4.8E-35 220.6 20.0 219 78-332 65-295 (365)
26 3mkr_A Coatomer subunit epsilo 100.0 1.1E-28 3.8E-33 201.5 28.1 238 31-324 33-275 (291)
27 3cv0_A Peroxisome targeting si 100.0 1.1E-29 3.8E-34 211.5 22.5 240 31-318 54-320 (327)
28 2q7f_A YRRB protein; TPR, prot 100.0 1.8E-29 6E-34 201.3 21.1 218 77-330 22-239 (243)
29 2ho1_A Type 4 fimbrial biogene 100.0 2.2E-28 7.6E-33 196.2 25.7 217 72-324 30-249 (252)
30 2vq2_A PILW, putative fimbrial 100.0 4.7E-28 1.6E-32 190.6 26.7 217 72-324 2-222 (225)
31 4g1t_A Interferon-induced prot 100.0 1E-27 3.5E-32 209.9 30.2 295 30-333 49-445 (472)
32 2q7f_A YRRB protein; TPR, prot 100.0 9.3E-29 3.2E-33 197.1 21.0 224 27-298 18-241 (243)
33 4abn_A Tetratricopeptide repea 100.0 2.6E-28 8.8E-33 213.0 24.8 214 60-310 84-318 (474)
34 1xnf_A Lipoprotein NLPI; TPR, 100.0 1.2E-28 3.9E-33 200.3 20.8 249 38-336 11-267 (275)
35 3vtx_A MAMA; tetratricopeptide 100.0 5.9E-28 2E-32 184.3 22.0 171 112-318 5-175 (184)
36 3vtx_A MAMA; tetratricopeptide 100.0 5.6E-28 1.9E-32 184.4 21.5 174 76-285 3-176 (184)
37 3uq3_A Heat shock protein STI1 100.0 1.2E-27 4.2E-32 192.3 23.6 214 75-333 2-222 (258)
38 4g1t_A Interferon-induced prot 100.0 3.9E-27 1.3E-31 206.2 26.9 291 32-325 94-471 (472)
39 3mkr_A Coatomer subunit epsilo 100.0 5.7E-27 2E-31 191.4 25.9 238 40-333 7-249 (291)
40 1ouv_A Conserved hypothetical 100.0 1.4E-26 4.8E-31 188.0 27.7 229 31-319 5-257 (273)
41 2ho1_A Type 4 fimbrial biogene 100.0 1.2E-26 4E-31 186.1 26.2 212 30-289 35-248 (252)
42 4i17_A Hypothetical protein; T 100.0 7.7E-27 2.6E-31 184.3 23.8 213 74-329 3-225 (228)
43 2ond_A Cleavage stimulation fa 100.0 3E-26 1E-30 189.2 28.2 224 49-320 33-277 (308)
44 3u4t_A TPR repeat-containing p 100.0 2.8E-27 9.6E-32 191.9 21.6 219 77-332 2-235 (272)
45 4abn_A Tetratricopeptide repea 100.0 2.3E-26 7.9E-31 200.7 25.9 205 91-332 81-306 (474)
46 3sf4_A G-protein-signaling mod 100.0 3.6E-27 1.2E-31 202.2 20.4 292 32-336 9-365 (406)
47 4a1s_A PINS, partner of inscut 100.0 3.9E-27 1.3E-31 202.6 20.5 278 29-319 45-378 (411)
48 2vq2_A PILW, putative fimbrial 100.0 1.7E-25 5.7E-30 176.0 28.1 213 30-290 6-222 (225)
49 3ro2_A PINS homolog, G-protein 100.0 6.9E-27 2.3E-31 195.1 20.7 243 31-315 4-294 (338)
50 3sf4_A G-protein-signaling mod 99.9 7.9E-27 2.7E-31 200.1 18.8 274 31-313 46-376 (406)
51 4gyw_A UDP-N-acetylglucosamine 99.9 9E-27 3.1E-31 210.8 19.7 172 74-281 5-176 (723)
52 1xnf_A Lipoprotein NLPI; TPR, 99.9 6.4E-26 2.2E-30 184.1 21.5 231 28-307 39-269 (275)
53 4gyw_A UDP-N-acetylglucosamine 99.9 1.5E-26 5.1E-31 209.4 18.4 175 107-317 4-178 (723)
54 4i17_A Hypothetical protein; T 99.9 7.3E-25 2.5E-29 173.0 25.1 209 32-295 7-225 (228)
55 4a1s_A PINS, partner of inscut 99.9 6E-26 2.1E-30 195.1 16.9 246 32-284 86-377 (411)
56 1ouv_A Conserved hypothetical 99.9 5.6E-24 1.9E-28 172.6 27.4 209 74-330 2-230 (273)
57 3nf1_A KLC 1, kinesin light ch 99.9 3.9E-26 1.3E-30 188.6 14.9 256 29-316 24-310 (311)
58 3ulq_A Response regulator aspa 99.9 1.9E-25 6.4E-30 190.3 19.4 243 33-316 104-371 (383)
59 3ro2_A PINS homolog, G-protein 99.9 1.3E-25 4.4E-30 187.3 16.4 250 32-317 43-336 (338)
60 3qky_A Outer membrane assembly 99.9 1.4E-24 4.8E-29 175.0 21.2 199 72-303 9-251 (261)
61 3dra_A Protein farnesyltransfe 99.9 4.2E-24 1.4E-28 173.3 23.9 232 49-328 50-303 (306)
62 2ond_A Cleavage stimulation fa 99.9 4.9E-24 1.7E-28 176.0 24.8 238 30-326 48-305 (308)
63 2pzi_A Probable serine/threoni 99.9 9.5E-25 3.2E-29 198.5 20.4 188 72-299 388-583 (681)
64 3qky_A Outer membrane assembly 99.9 7.9E-24 2.7E-28 170.6 22.4 210 105-333 8-247 (261)
65 1qqe_A Vesicular transport pro 99.9 1.6E-24 5.3E-29 177.5 17.8 217 85-330 44-286 (292)
66 3urz_A Uncharacterized protein 99.9 7.5E-24 2.6E-28 164.5 18.3 195 77-327 3-199 (208)
67 3as5_A MAMA; tetratricopeptide 99.9 3.7E-23 1.3E-27 157.4 20.1 174 112-321 8-181 (186)
68 3q15_A PSP28, response regulat 99.9 1.7E-23 5.9E-28 177.8 19.8 246 32-315 101-367 (378)
69 3as5_A MAMA; tetratricopeptide 99.9 7E-23 2.4E-27 155.9 19.8 175 75-285 5-179 (186)
70 2xm6_A Protein corresponding t 99.9 2E-21 6.8E-26 170.8 31.6 232 77-328 182-450 (490)
71 3edt_B KLC 2, kinesin light ch 99.9 8E-24 2.7E-28 172.2 14.9 240 43-314 12-282 (283)
72 3ulq_A Response regulator aspa 99.9 6.5E-23 2.2E-27 174.6 21.0 222 80-332 105-353 (383)
73 3urz_A Uncharacterized protein 99.9 5.9E-23 2E-27 159.4 19.0 161 112-327 4-166 (208)
74 4ga2_A E3 SUMO-protein ligase 99.9 2.5E-24 8.6E-29 158.0 10.6 143 152-330 3-146 (150)
75 2xm6_A Protein corresponding t 99.9 9.8E-21 3.3E-25 166.4 35.3 238 77-330 146-411 (490)
76 2pzi_A Probable serine/threoni 99.9 1.6E-23 5.5E-28 190.5 18.0 183 106-328 388-578 (681)
77 4ga2_A E3 SUMO-protein ligase 99.9 6.3E-24 2.2E-28 155.8 11.9 147 117-299 2-149 (150)
78 2ooe_A Cleavage stimulation fa 99.9 5.8E-22 2E-26 175.9 25.9 221 62-318 256-497 (530)
79 3dss_A Geranylgeranyl transfer 99.9 1.3E-20 4.6E-25 153.5 30.3 231 61-327 47-318 (331)
80 2yhc_A BAMD, UPF0169 lipoprote 99.9 3.7E-22 1.3E-26 157.0 20.0 208 77-319 3-219 (225)
81 1qqe_A Vesicular transport pro 99.9 9.4E-23 3.2E-27 166.9 17.1 226 32-294 37-284 (292)
82 3nf1_A KLC 1, kinesin light ch 99.9 2.5E-23 8.6E-28 171.7 13.3 234 72-333 21-293 (311)
83 2ooe_A Cleavage stimulation fa 99.9 6.6E-20 2.3E-24 162.7 30.1 189 95-319 255-460 (530)
84 4f3v_A ESX-1 secretion system 99.9 4.6E-22 1.6E-26 157.6 14.3 208 80-325 9-248 (282)
85 3dra_A Protein farnesyltransfe 99.9 3.3E-20 1.1E-24 150.5 25.2 207 89-331 43-271 (306)
86 2yhc_A BAMD, UPF0169 lipoprote 99.9 6.9E-21 2.4E-25 149.7 20.7 171 31-213 3-217 (225)
87 1hz4_A MALT regulatory protein 99.9 2.3E-20 7.8E-25 158.3 24.9 295 29-336 11-351 (373)
88 4gco_A Protein STI-1; structur 99.9 8.6E-22 3E-26 139.7 13.3 121 172-328 5-125 (126)
89 3q7a_A Farnesyltransferase alp 99.9 7E-20 2.4E-24 149.8 25.9 238 43-328 65-347 (349)
90 2r5s_A Uncharacterized protein 99.9 7.6E-22 2.6E-26 149.0 12.8 170 74-278 2-172 (176)
91 4gco_A Protein STI-1; structur 99.9 1.6E-21 5.5E-26 138.3 13.4 121 70-190 5-125 (126)
92 2r5s_A Uncharacterized protein 99.9 1.7E-21 5.7E-26 147.2 14.3 168 108-312 2-172 (176)
93 3q15_A PSP28, response regulat 99.9 3.8E-20 1.3E-24 157.2 24.0 221 80-332 103-350 (378)
94 3qou_A Protein YBBN; thioredox 99.9 1.4E-20 4.9E-25 153.4 19.5 169 108-312 113-283 (287)
95 3qou_A Protein YBBN; thioredox 99.9 9.3E-21 3.2E-25 154.5 18.4 172 73-278 112-283 (287)
96 3e4b_A ALGK; tetratricopeptide 99.9 7E-20 2.4E-24 158.8 24.7 258 34-330 37-366 (452)
97 3e4b_A ALGK; tetratricopeptide 99.9 1.1E-19 3.8E-24 157.6 23.6 275 31-330 68-402 (452)
98 3dss_A Geranylgeranyl transfer 99.9 8.6E-19 2.9E-23 142.9 26.8 200 90-325 41-279 (331)
99 2vsy_A XCC0866; transferase, g 99.9 3.4E-20 1.1E-24 165.9 20.4 165 91-291 2-169 (568)
100 2vsy_A XCC0866; transferase, g 99.9 1.9E-20 6.5E-25 167.5 18.4 164 125-324 2-168 (568)
101 2ifu_A Gamma-SNAP; membrane fu 99.9 6.5E-21 2.2E-25 157.1 13.9 203 44-283 3-227 (307)
102 3gyz_A Chaperone protein IPGC; 99.8 5.4E-21 1.9E-25 139.4 10.6 118 165-318 21-138 (151)
103 1hz4_A MALT regulatory protein 99.8 4.8E-19 1.7E-23 150.1 23.5 271 31-318 52-354 (373)
104 3edt_B KLC 2, kinesin light ch 99.8 1.1E-19 3.7E-24 147.6 17.5 217 29-280 40-282 (283)
105 3gyz_A Chaperone protein IPGC; 99.8 7.6E-21 2.6E-25 138.6 9.2 115 99-213 23-137 (151)
106 3rjv_A Putative SEL1 repeat pr 99.8 5E-19 1.7E-23 137.6 19.9 185 96-326 4-208 (212)
107 1xi4_A Clathrin heavy chain; a 99.8 1.9E-18 6.5E-23 160.7 26.8 263 38-331 1055-1327(1630)
108 1p5q_A FKBP52, FK506-binding p 99.8 1.1E-21 3.8E-26 163.5 4.1 184 92-313 79-294 (336)
109 2c2l_A CHIP, carboxy terminus 99.8 5E-20 1.7E-24 149.6 13.2 198 75-313 1-199 (281)
110 2vgx_A Chaperone SYCD; alterna 99.8 8.1E-20 2.8E-24 133.4 12.4 126 166-327 7-132 (148)
111 4f3v_A ESX-1 secretion system 99.8 1.6E-19 5.5E-24 143.1 14.8 207 36-292 11-249 (282)
112 1p5q_A FKBP52, FK506-binding p 99.8 4.3E-21 1.5E-25 159.9 4.8 190 40-279 73-294 (336)
113 2ifu_A Gamma-SNAP; membrane fu 99.8 4.7E-19 1.6E-23 146.0 16.8 205 59-319 6-229 (307)
114 3q7a_A Farnesyltransferase alp 99.8 4.6E-18 1.6E-22 139.1 21.8 218 78-331 54-315 (349)
115 3rjv_A Putative SEL1 repeat pr 99.8 3.5E-18 1.2E-22 132.8 19.6 173 75-291 15-207 (212)
116 2xcb_A PCRH, regulatory protei 99.8 5.7E-19 2E-23 128.2 12.5 126 167-328 5-130 (142)
117 2vgx_A Chaperone SYCD; alterna 99.8 8.3E-19 2.8E-23 128.0 13.1 116 68-183 11-126 (148)
118 2fo7_A Synthetic consensus TPR 99.8 5.7E-18 1.9E-22 121.4 17.2 134 79-212 2-135 (136)
119 2fo7_A Synthetic consensus TPR 99.8 1E-17 3.6E-22 120.0 18.3 133 148-316 3-135 (136)
120 1dce_A Protein (RAB geranylger 99.8 6.8E-19 2.3E-23 155.8 14.0 188 94-317 45-271 (567)
121 1b89_A Protein (clathrin heavy 99.8 2.7E-19 9.4E-24 149.7 10.4 222 33-331 33-254 (449)
122 2qfc_A PLCR protein; TPR, HTH, 99.8 2.9E-17 1E-21 134.3 22.2 176 74-279 71-266 (293)
123 2c2l_A CHIP, carboxy terminus 99.8 3.7E-18 1.3E-22 138.6 15.6 181 109-330 1-181 (281)
124 2xcb_A PCRH, regulatory protei 99.8 4.4E-18 1.5E-22 123.5 14.1 115 99-213 5-119 (142)
125 3upv_A Heat shock protein STI1 99.8 7.2E-18 2.5E-22 119.7 14.3 117 178-330 2-124 (126)
126 1dce_A Protein (RAB geranylger 99.8 8.5E-19 2.9E-23 155.1 11.3 185 62-282 47-270 (567)
127 3mv2_B Coatomer subunit epsilo 99.8 1.3E-16 4.6E-21 128.0 22.9 189 97-324 85-293 (310)
128 2e2e_A Formate-dependent nitri 99.8 5.3E-18 1.8E-22 128.0 13.8 133 156-324 20-155 (177)
129 2qfc_A PLCR protein; TPR, HTH, 99.8 5E-17 1.7E-21 133.0 19.1 178 108-315 71-268 (293)
130 3upv_A Heat shock protein STI1 99.8 1.3E-17 4.6E-22 118.3 13.6 118 75-192 1-124 (126)
131 1hh8_A P67PHOX, NCF-2, neutrop 99.8 9E-17 3.1E-21 125.0 19.2 145 112-283 6-154 (213)
132 1a17_A Serine/threonine protei 99.8 4.6E-17 1.6E-21 121.2 16.8 137 77-213 12-150 (166)
133 3u3w_A Transcriptional activat 99.8 6.3E-17 2.1E-21 132.4 18.7 171 79-279 76-266 (293)
134 1xi4_A Clathrin heavy chain; a 99.8 5E-16 1.7E-20 144.8 26.4 256 31-332 1104-1369(1630)
135 1hh8_A P67PHOX, NCF-2, neutrop 99.8 1E-16 3.5E-21 124.7 18.5 134 31-179 5-154 (213)
136 2fbn_A 70 kDa peptidylprolyl i 99.8 4.9E-18 1.7E-22 130.6 10.7 161 80-276 6-183 (198)
137 2hr2_A Hypothetical protein; a 99.7 2.5E-17 8.5E-22 118.4 12.8 128 180-331 11-149 (159)
138 2fbn_A 70 kDa peptidylprolyl i 99.7 5E-18 1.7E-22 130.6 9.7 166 151-336 9-174 (198)
139 2vyi_A SGTA protein; chaperone 99.7 4.9E-17 1.7E-21 115.8 14.0 126 72-197 6-131 (131)
140 3u3w_A Transcriptional activat 99.7 1.4E-16 4.8E-21 130.3 18.6 172 114-314 77-267 (293)
141 2lni_A Stress-induced-phosphop 99.7 6.6E-17 2.3E-21 115.6 14.7 123 73-195 11-133 (133)
142 3mv2_B Coatomer subunit epsilo 99.7 1.8E-16 6E-21 127.3 18.3 224 33-287 46-290 (310)
143 3rkv_A Putative peptidylprolyl 99.7 1.7E-16 5.8E-21 117.8 16.7 138 180-337 11-151 (162)
144 3sz7_A HSC70 cochaperone (SGT) 99.7 8.9E-17 3.1E-21 119.6 14.8 108 178-321 9-116 (164)
145 1a17_A Serine/threonine protei 99.7 1.9E-16 6.3E-21 117.9 16.2 130 148-313 15-146 (166)
146 3sz7_A HSC70 cochaperone (SGT) 99.7 4.9E-17 1.7E-21 121.0 12.9 119 73-191 6-124 (164)
147 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 5.2E-19 1.8E-23 153.4 2.4 145 125-305 247-406 (457)
148 2e2e_A Formate-dependent nitri 99.7 3.6E-17 1.2E-21 123.4 12.1 123 91-213 23-148 (177)
149 4gcn_A Protein STI-1; structur 99.7 1.4E-16 4.9E-21 112.9 12.9 66 148-213 10-75 (127)
150 4e6h_A MRNA 3'-END-processing 99.7 5.3E-15 1.8E-19 132.8 26.1 224 63-322 328-579 (679)
151 4gcn_A Protein STI-1; structur 99.7 9.8E-17 3.4E-21 113.8 12.0 108 75-183 5-119 (127)
152 2lni_A Stress-induced-phosphop 99.7 4.7E-16 1.6E-20 111.1 15.4 123 107-265 11-133 (133)
153 3q49_B STIP1 homology and U bo 99.7 5.2E-16 1.8E-20 111.6 15.6 121 175-331 4-129 (137)
154 1b89_A Protein (clathrin heavy 99.7 1.3E-17 4.3E-22 139.7 7.6 228 31-330 60-294 (449)
155 2vyi_A SGTA protein; chaperone 99.7 3.1E-16 1.1E-20 111.6 13.6 79 251-329 47-125 (131)
156 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 2.8E-17 9.5E-22 142.6 9.2 151 90-276 246-412 (457)
157 3q49_B STIP1 homology and U bo 99.7 2.7E-16 9.3E-21 113.2 13.0 122 72-193 3-129 (137)
158 1na0_A Designed protein CTPR3; 99.7 1E-15 3.4E-20 108.0 15.5 121 74-194 4-125 (125)
159 1hxi_A PEX5, peroxisome target 99.7 2.7E-16 9.1E-21 110.4 12.0 102 182-319 19-120 (121)
160 3gw4_A Uncharacterized protein 99.7 3.4E-16 1.2E-20 120.6 13.4 162 89-280 3-177 (203)
161 3gw4_A Uncharacterized protein 99.7 9.8E-16 3.4E-20 118.0 15.0 181 122-333 2-195 (203)
162 1elw_A TPR1-domain of HOP; HOP 99.7 2.7E-15 9.2E-20 104.6 15.9 113 180-328 4-116 (118)
163 1na0_A Designed protein CTPR3; 99.7 3.2E-15 1.1E-19 105.3 16.4 115 180-330 9-123 (125)
164 1hxi_A PEX5, peroxisome target 99.7 2.8E-16 9.6E-21 110.3 10.7 101 80-180 19-119 (121)
165 2hr2_A Hypothetical protein; a 99.7 3.3E-16 1.1E-20 112.6 10.8 115 26-152 5-142 (159)
166 1elw_A TPR1-domain of HOP; HOP 99.7 2.1E-15 7E-20 105.2 14.7 114 77-190 3-116 (118)
167 3rkv_A Putative peptidylprolyl 99.7 4.7E-16 1.6E-20 115.4 11.9 122 76-197 9-149 (162)
168 2dba_A Smooth muscle cell asso 99.7 3.4E-15 1.2E-19 108.7 14.2 119 73-191 23-144 (148)
169 1wao_1 Serine/threonine protei 99.7 8.4E-17 2.9E-21 140.1 6.4 134 148-317 8-154 (477)
170 1wao_1 Serine/threonine protei 99.6 3.2E-17 1.1E-21 142.7 3.3 139 76-214 4-155 (477)
171 4b4t_Q 26S proteasome regulato 99.6 3.9E-15 1.3E-19 128.6 15.9 207 78-314 4-246 (434)
172 2dba_A Smooth muscle cell asso 99.6 6.9E-15 2.4E-19 107.1 14.8 121 175-328 23-143 (148)
173 1zu2_A Mitochondrial import re 99.6 3.5E-15 1.2E-19 107.0 11.9 91 158-284 14-125 (158)
174 2kck_A TPR repeat; tetratricop 99.6 1.9E-15 6.5E-20 104.4 10.4 106 176-317 2-110 (112)
175 2xev_A YBGF; tetratricopeptide 99.6 6.1E-15 2.1E-19 104.8 13.3 116 79-194 3-124 (129)
176 2if4_A ATFKBP42; FKBP-like, al 99.6 2.5E-16 8.7E-21 131.1 7.0 141 74-214 175-333 (338)
177 1elr_A TPR2A-domain of HOP; HO 99.6 4.3E-15 1.5E-19 105.6 12.1 120 75-195 1-127 (131)
178 1elr_A TPR2A-domain of HOP; HO 99.6 7.9E-15 2.7E-19 104.3 13.4 116 180-332 4-126 (131)
179 2xev_A YBGF; tetratricopeptide 99.6 1.6E-14 5.6E-19 102.6 15.0 114 182-328 4-120 (129)
180 2kck_A TPR repeat; tetratricop 99.6 2E-15 6.8E-20 104.3 9.8 106 74-179 2-110 (112)
181 1zu2_A Mitochondrial import re 99.6 3.2E-15 1.1E-19 107.2 10.7 101 191-327 13-134 (158)
182 2if4_A ATFKBP42; FKBP-like, al 99.6 1.1E-15 3.8E-20 127.3 8.7 159 108-319 175-334 (338)
183 1ihg_A Cyclophilin 40; ppiase 99.6 1.3E-14 4.4E-19 122.1 14.2 126 77-202 222-363 (370)
184 3k9i_A BH0479 protein; putativ 99.6 3E-15 1E-19 104.5 8.2 103 90-192 2-107 (117)
185 3k9i_A BH0479 protein; putativ 99.6 1.3E-14 4.3E-19 101.3 11.3 98 192-325 2-102 (117)
186 3ro3_A PINS homolog, G-protein 99.6 1.7E-14 5.7E-19 106.6 11.7 139 148-316 11-161 (164)
187 3ro3_A PINS homolog, G-protein 99.6 1.3E-14 4.4E-19 107.2 11.0 148 77-282 8-161 (164)
188 1ihg_A Cyclophilin 40; ppiase 99.6 6.4E-14 2.2E-18 117.8 16.2 134 180-333 223-356 (370)
189 4b4t_Q 26S proteasome regulato 99.6 2E-13 6.9E-18 117.8 17.7 177 112-318 4-209 (434)
190 4e6h_A MRNA 3'-END-processing 99.6 5.8E-13 2E-17 119.6 20.8 187 95-316 326-536 (679)
191 2kat_A Uncharacterized protein 99.4 1.7E-12 5.8E-17 90.1 12.0 101 197-333 2-104 (115)
192 2l6j_A TPR repeat-containing p 99.4 1.2E-13 4.2E-18 95.1 4.5 92 77-168 3-100 (111)
193 2kat_A Uncharacterized protein 99.4 1.3E-11 4.4E-16 85.5 13.9 84 130-213 3-86 (115)
194 2l6j_A TPR repeat-containing p 99.4 2.7E-13 9.3E-18 93.4 5.2 82 251-332 5-92 (111)
195 2uy1_A Cleavage stimulation fa 99.4 1E-09 3.6E-14 95.7 28.2 260 46-326 28-362 (493)
196 1na3_A Designed protein CTPR2; 99.4 6.2E-12 2.1E-16 83.0 10.9 82 250-331 9-90 (91)
197 1na3_A Designed protein CTPR2; 99.4 4.7E-12 1.6E-16 83.6 10.0 84 76-159 7-90 (91)
198 3ma5_A Tetratricopeptide repea 99.3 3.7E-11 1.3E-15 80.9 11.3 87 247-333 4-92 (100)
199 2kc7_A BFR218_protein; tetratr 99.3 1E-11 3.5E-16 83.5 7.7 90 185-318 5-95 (99)
200 2kc7_A BFR218_protein; tetratr 99.3 9.3E-12 3.2E-16 83.7 6.8 89 82-178 4-93 (99)
201 1klx_A Cysteine rich protein B 99.3 1.5E-10 5.1E-15 82.9 13.4 61 251-313 58-126 (138)
202 3ma5_A Tetratricopeptide repea 99.3 7.5E-11 2.6E-15 79.3 11.1 72 142-213 3-74 (100)
203 1klx_A Cysteine rich protein B 99.2 4.3E-10 1.5E-14 80.4 14.4 120 125-290 8-135 (138)
204 3ly7_A Transcriptional activat 99.2 3.9E-10 1.3E-14 92.2 15.4 142 72-214 188-344 (372)
205 3n71_A Histone lysine methyltr 99.2 6.2E-11 2.1E-15 102.6 11.3 134 153-314 316-465 (490)
206 3u64_A Protein TP_0956; tetrat 99.2 9.3E-10 3.2E-14 86.3 16.4 106 108-213 148-273 (301)
207 2uy1_A Cleavage stimulation fa 99.2 4.5E-09 1.5E-13 91.7 21.4 204 63-312 198-412 (493)
208 3n71_A Histone lysine methyltr 99.2 1.1E-10 3.7E-15 101.1 10.6 134 119-280 316-465 (490)
209 3ly7_A Transcriptional activat 99.2 6.3E-09 2.2E-13 85.2 19.1 148 140-318 188-344 (372)
210 3u64_A Protein TP_0956; tetrat 99.1 4.4E-09 1.5E-13 82.5 16.9 110 174-317 146-273 (301)
211 1pc2_A Mitochondria fission pr 99.1 1.6E-09 5.4E-14 76.8 12.0 84 250-333 32-120 (152)
212 3bee_A Putative YFRE protein; 99.1 1.5E-09 5E-14 71.3 10.7 74 74-147 2-78 (93)
213 3bee_A Putative YFRE protein; 99.0 5.9E-09 2E-13 68.5 10.6 73 247-319 3-78 (93)
214 1pc2_A Mitochondria fission pr 99.0 1.9E-08 6.5E-13 71.3 12.7 98 161-293 13-114 (152)
215 2v5f_A Prolyl 4-hydroxylase su 99.0 1.7E-08 6E-13 68.0 11.9 79 250-328 5-90 (104)
216 3qww_A SET and MYND domain-con 98.9 7.9E-09 2.7E-13 88.1 10.7 105 192-324 310-427 (433)
217 2v5f_A Prolyl 4-hydroxylase su 98.9 5.1E-08 1.8E-12 65.7 11.5 84 179-291 4-87 (104)
218 4g26_A Pentatricopeptide repea 98.8 1.1E-06 3.6E-11 76.9 21.3 127 81-208 29-168 (501)
219 3qwp_A SET and MYND domain-con 98.8 5.4E-08 1.8E-12 83.1 12.8 115 188-330 295-425 (429)
220 3qww_A SET and MYND domain-con 98.8 3.8E-08 1.3E-12 83.9 10.7 103 157-287 309-424 (433)
221 4g26_A Pentatricopeptide repea 98.7 4.7E-06 1.6E-10 72.8 23.0 170 114-318 28-211 (501)
222 3qwp_A SET and MYND domain-con 98.7 3.6E-08 1.2E-12 84.2 9.1 114 155-296 296-425 (429)
223 1nzn_A CGI-135 protein, fissio 98.6 6.5E-07 2.2E-11 61.0 10.7 84 250-333 35-123 (126)
224 4h7y_A Dual specificity protei 98.6 3E-06 1E-10 59.0 13.4 120 175-323 8-133 (161)
225 1nzn_A CGI-135 protein, fissio 98.5 4.6E-06 1.6E-10 56.9 12.1 97 161-292 16-116 (126)
226 4h7y_A Dual specificity protei 98.3 1.2E-05 4.2E-10 56.0 11.6 55 159-213 73-127 (161)
227 3o48_A Mitochondria fission 1 98.3 2.4E-05 8.3E-10 53.4 11.3 84 250-333 40-127 (134)
228 1y8m_A FIS1; mitochondria, unk 98.2 7.5E-05 2.6E-09 51.7 13.4 87 247-333 36-126 (144)
229 3ffl_A Anaphase-promoting comp 98.1 2.4E-05 8.3E-10 55.8 8.6 133 36-190 24-165 (167)
230 3ffl_A Anaphase-promoting comp 98.1 0.00013 4.4E-09 52.1 12.2 120 181-328 21-165 (167)
231 1y8m_A FIS1; mitochondria, unk 97.8 0.0013 4.4E-08 45.7 13.3 82 177-293 36-120 (144)
232 3o48_A Mitochondria fission 1 97.8 0.00088 3E-08 45.8 12.1 80 179-293 39-121 (134)
233 3txn_A 26S proteasome regulato 97.7 0.0028 9.4E-08 53.0 16.0 179 78-314 19-211 (394)
234 3txn_A 26S proteasome regulato 97.4 0.044 1.5E-06 45.8 23.2 168 31-211 18-212 (394)
235 4gns_B Protein CSD3, chitin bi 97.2 0.012 4E-07 53.6 15.3 134 158-310 260-397 (754)
236 4gns_B Protein CSD3, chitin bi 97.1 0.0037 1.3E-07 56.7 11.2 112 128-276 265-397 (754)
237 3mkq_B Coatomer subunit alpha; 97.0 0.052 1.8E-06 39.5 14.0 109 77-206 7-115 (177)
238 1ya0_A SMG-7 transcript varian 97.0 0.011 3.7E-07 51.2 12.0 84 251-334 153-236 (497)
239 3mkq_B Coatomer subunit alpha; 96.9 0.065 2.2E-06 39.0 14.2 19 257-275 96-114 (177)
240 3mkq_A Coatomer beta'-subunit; 96.9 0.12 4E-06 48.1 19.6 75 82-172 633-707 (814)
241 3mkq_A Coatomer beta'-subunit; 96.9 0.061 2.1E-06 49.9 17.6 166 87-309 608-774 (814)
242 3kae_A CDC27, possible protein 96.8 0.072 2.5E-06 38.1 17.6 206 75-317 30-241 (242)
243 1qsa_A Protein (soluble lytic 96.7 0.32 1.1E-05 43.4 21.5 238 70-312 61-347 (618)
244 1zbp_A Hypothetical protein VP 96.6 0.034 1.2E-06 43.3 11.4 123 87-216 6-136 (273)
245 3kae_A CDC27, possible protein 96.6 0.11 3.8E-06 37.2 17.6 70 74-143 58-145 (242)
246 2ff4_A Probable regulatory pro 96.6 0.093 3.2E-06 44.1 14.8 107 191-312 126-233 (388)
247 4fhn_B Nucleoporin NUP120; pro 96.6 0.42 1.4E-05 46.4 20.9 118 84-205 818-963 (1139)
248 1zbp_A Hypothetical protein VP 96.5 0.19 6.3E-06 39.2 14.8 59 155-213 6-64 (273)
249 3spa_A Mtrpol, DNA-directed RN 96.5 0.19 6.5E-06 47.2 17.3 61 149-209 130-194 (1134)
250 4b4t_P 26S proteasome regulato 96.5 0.36 1.2E-05 41.3 18.2 191 91-313 29-247 (445)
251 3spa_A Mtrpol, DNA-directed RN 96.4 0.1 3.5E-06 49.0 14.9 98 113-210 128-231 (1134)
252 1ya0_A SMG-7 transcript varian 96.4 0.024 8.4E-07 49.0 10.0 79 80-158 154-232 (497)
253 4b4t_R RPN7, 26S proteasome re 96.3 0.057 2E-06 46.1 12.0 106 145-280 130-238 (429)
254 2ff4_A Probable regulatory pro 96.1 0.1 3.5E-06 43.8 12.4 59 151-209 176-234 (388)
255 4fhn_B Nucleoporin NUP120; pro 96.0 0.35 1.2E-05 46.9 17.2 144 149-309 815-963 (1139)
256 4b4t_P 26S proteasome regulato 95.9 0.68 2.3E-05 39.6 19.8 197 45-279 29-247 (445)
257 4b4t_R RPN7, 26S proteasome re 95.7 0.13 4.5E-06 43.8 11.6 102 180-314 131-238 (429)
258 4b4t_S RPN3, 26S proteasome re 95.4 0.06 2E-06 46.4 8.2 138 156-318 146-304 (523)
259 4ady_A RPN2, 26S proteasome re 95.0 1.7 5.6E-05 40.8 16.8 125 79-206 414-550 (963)
260 4b4t_S RPN3, 26S proteasome re 94.3 0.055 1.9E-06 46.6 5.1 143 34-179 138-303 (523)
261 1qsa_A Protein (soluble lytic 91.8 6.9 0.00024 35.0 24.4 210 84-309 220-438 (618)
262 3lvg_A Clathrin heavy chain 1; 90.9 2.8E-06 9.5E-11 71.4 -24.6 38 293-330 238-275 (624)
263 4gq2_M Nucleoporin NUP120; bet 89.6 11 0.00036 35.9 14.8 53 151-207 815-867 (950)
264 2wpv_A GET4, UPF0363 protein Y 87.2 10 0.00035 30.5 15.1 62 246-310 130-194 (312)
265 3lvg_A Clathrin heavy chain 1; 83.5 4.5E-05 1.5E-09 64.3 -21.6 175 76-311 52-226 (624)
266 1wy6_A Hypothetical protein ST 83.5 6.8 0.00023 27.1 7.2 55 259-313 100-154 (172)
267 3ax2_A Mitochondrial import re 83.1 3.9 0.00013 24.6 5.3 28 255-282 22-49 (73)
268 4gq2_M Nucleoporin NUP120; bet 82.2 13 0.00044 35.4 11.3 94 84-181 816-933 (950)
269 3ax2_A Mitochondrial import re 78.1 7.7 0.00026 23.3 5.4 39 288-326 21-59 (73)
270 3esl_A Checkpoint serine/threo 75.8 17 0.00058 27.0 7.9 64 78-142 80-145 (202)
271 1wy6_A Hypothetical protein ST 72.3 22 0.00074 24.7 9.3 51 124-174 103-153 (172)
272 1om2_A Protein (mitochondrial 72.0 6.9 0.00024 24.9 4.3 32 254-285 24-55 (95)
273 2wpv_A GET4, UPF0363 protein Y 71.9 37 0.0013 27.3 21.4 66 144-209 132-217 (312)
274 2w2u_A Hypothetical P60 katani 70.8 16 0.00055 22.6 6.5 38 33-75 20-57 (83)
275 3t5x_A PCI domain-containing p 69.3 15 0.00051 27.4 6.5 35 250-284 14-48 (203)
276 2crb_A Nuclear receptor bindin 68.7 10 0.00035 23.8 4.4 29 250-278 15-43 (97)
277 2ijq_A Hypothetical protein; s 68.0 30 0.001 24.6 8.1 61 253-313 35-104 (161)
278 2crb_A Nuclear receptor bindin 67.9 10 0.00035 23.8 4.3 27 285-311 16-42 (97)
279 2v6y_A AAA family ATPase, P60 67.9 19 0.00064 22.2 6.3 38 34-76 13-50 (83)
280 3t5x_A PCI domain-containing p 67.5 13 0.00045 27.7 5.9 35 78-112 14-48 (203)
281 4a5x_A MITD1, MIT domain-conta 65.9 21 0.00073 22.2 9.1 42 31-77 15-56 (86)
282 1om2_A Protein (mitochondrial 64.1 13 0.00045 23.6 4.4 37 288-324 24-60 (95)
283 3re2_A Predicted protein; meni 63.0 51 0.0018 27.0 8.5 30 250-279 296-325 (472)
284 3re2_A Predicted protein; meni 62.9 63 0.0021 26.5 11.0 90 235-324 240-342 (472)
285 3t5v_B Nuclear mRNA export pro 62.3 24 0.00081 30.2 7.1 65 253-317 179-254 (455)
286 2cfu_A SDSA1; SDS-hydrolase, l 61.9 22 0.00076 32.1 7.3 51 286-336 451-501 (658)
287 2ijq_A Hypothetical protein; s 61.9 40 0.0014 24.0 8.1 61 81-141 35-104 (161)
288 3t5v_B Nuclear mRNA export pro 61.4 22 0.00075 30.4 6.7 64 82-145 180-254 (455)
289 2rpa_A Katanin P60 ATPase-cont 60.9 12 0.0004 22.9 3.7 25 288-312 16-40 (78)
290 2rpa_A Katanin P60 ATPase-cont 60.9 11 0.00038 23.0 3.5 27 81-107 15-41 (78)
291 2w2u_A Hypothetical P60 katani 56.9 21 0.00071 22.1 4.4 26 253-278 22-47 (83)
292 3u84_A Menin; MLL, JUND, ledgf 54.3 97 0.0033 26.0 11.1 91 235-325 262-365 (550)
293 3esl_A Checkpoint serine/threo 53.7 66 0.0022 23.9 12.6 64 250-314 80-145 (202)
294 2v6y_A AAA family ATPase, P60 52.8 26 0.0009 21.6 4.4 27 252-278 13-39 (83)
295 4ady_A RPN2, 26S proteasome re 50.9 1.7E+02 0.0058 27.8 18.5 170 28-208 409-588 (963)
296 4a5x_A MITD1, MIT domain-conta 49.0 33 0.0011 21.3 4.4 27 252-278 18-44 (86)
297 4gq4_A Menin; tumor suppressor 48.9 1.2E+02 0.0041 25.5 11.4 91 235-325 247-350 (489)
298 2dl1_A Spartin; SPG20, MIT, st 48.5 16 0.00055 24.2 3.0 16 265-280 18-33 (116)
299 3lpz_A GET4 (YOR164C homolog); 45.2 1.2E+02 0.0042 24.6 26.9 25 179-203 135-159 (336)
300 2npu_A FKBP12-rapamycin comple 45.0 69 0.0024 21.6 5.7 78 252-332 42-124 (126)
301 2v6x_A Vacuolar protein sortin 44.9 52 0.0018 20.2 8.7 40 33-77 14-53 (85)
302 2cfu_A SDSA1; SDS-hydrolase, l 43.6 47 0.0016 30.0 6.3 45 82-126 453-497 (658)
303 2cpt_A SKD1 protein, vacuolar 43.2 71 0.0024 21.2 7.4 39 35-78 21-59 (117)
304 1wfd_A Hypothetical protein 15 42.3 46 0.0016 21.0 4.4 27 252-278 17-43 (93)
305 2vkj_A TM1634; membrane protei 42.2 61 0.0021 20.2 6.0 28 31-58 52-79 (106)
306 1wfd_A Hypothetical protein 15 42.1 63 0.0022 20.4 8.7 40 34-78 17-56 (93)
307 4b4t_O 26S proteasome regulato 41.2 1.5E+02 0.0053 24.6 10.3 28 182-209 129-156 (393)
308 2cwy_A Hypothetical protein TT 39.9 70 0.0024 20.2 6.5 56 255-312 6-67 (94)
309 3bu8_A Telomeric repeat-bindin 39.2 37 0.0013 25.4 3.9 45 256-300 120-164 (235)
310 2cpt_A SKD1 protein, vacuolar 38.8 53 0.0018 21.8 4.4 27 252-278 20-46 (117)
311 3u84_A Menin; MLL, JUND, ledgf 38.6 1.8E+02 0.0061 24.5 10.4 30 250-279 318-347 (550)
312 3bqo_A Telomeric repeat-bindin 34.8 35 0.0012 25.2 3.2 44 256-299 123-166 (211)
313 3bqo_A Telomeric repeat-bindin 34.3 40 0.0014 24.9 3.4 40 289-328 122-161 (211)
314 2ynq_A ESSB; membrane protein, 33.3 1.3E+02 0.0044 21.3 8.4 84 37-138 13-99 (161)
315 4gq4_A Menin; tumor suppressor 33.2 2.2E+02 0.0075 24.0 10.9 41 250-290 303-349 (489)
316 4aez_C MAD3, mitotic spindle c 30.5 1.8E+02 0.006 22.0 9.1 48 267-314 131-180 (223)
317 2wvi_A Mitotic checkpoint seri 30.3 1.5E+02 0.0051 21.1 10.6 31 250-280 96-126 (164)
318 3myv_A SUSD superfamily protei 28.2 1.5E+02 0.005 25.3 6.7 30 250-279 190-219 (454)
319 2cwy_A Hypothetical protein TT 28.2 1.2E+02 0.004 19.2 6.2 59 151-211 6-70 (94)
320 3bu8_A Telomeric repeat-bindin 27.4 2E+02 0.0068 21.7 9.0 40 290-329 120-159 (235)
321 3myv_A SUSD superfamily protei 26.9 1.9E+02 0.0065 24.5 7.2 30 284-313 190-219 (454)
322 4b4t_O 26S proteasome regulato 26.8 2.7E+02 0.0093 23.1 8.9 89 121-209 85-198 (393)
323 3kez_A Putative sugar binding 26.6 1.6E+02 0.0056 25.0 6.7 30 250-279 196-225 (461)
324 3lew_A SUSD-like carbohydrate 26.3 1.9E+02 0.0065 24.9 7.1 30 180-209 203-232 (495)
325 3kez_A Putative sugar binding 24.8 2.1E+02 0.0073 24.3 7.1 30 284-313 196-225 (461)
326 2vkj_A TM1634; membrane protei 24.5 1.3E+02 0.0046 18.7 6.4 26 288-313 57-82 (106)
327 3lew_A SUSD-like carbohydrate 24.4 2.2E+02 0.0074 24.6 7.1 30 284-313 203-232 (495)
328 2yhe_A SEC-alkyl sulfatase; hy 29.6 17 0.00057 33.0 0.0 51 287-337 464-514 (668)
329 3mcx_A SUSD superfamily protei 22.8 2.4E+02 0.0081 24.1 7.1 30 180-209 202-231 (477)
330 3mkr_B Coatomer subunit alpha; 22.6 3E+02 0.01 22.1 12.2 25 258-282 206-230 (320)
331 4aez_C MAD3, mitotic spindle c 22.5 2.5E+02 0.0087 21.2 9.4 29 180-208 150-178 (223)
332 3mcx_A SUSD superfamily protei 22.3 1.9E+02 0.0063 24.8 6.3 30 250-279 202-231 (477)
333 2ca5_A MXIH; transport protein 20.4 1.2E+02 0.0042 18.6 3.3 25 264-288 24-48 (85)
334 2e2a_A Protein (enzyme IIA); h 20.1 1.6E+02 0.0056 19.0 4.1 32 74-105 16-47 (105)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.8e-35 Score=252.75 Aligned_cols=298 Identities=17% Similarity=0.179 Sum_probs=217.1
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYY 88 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 88 (342)
....++.+|.++...|++++|+..|++++ +++|...+++++..+|++..++..+|.++
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 145 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45577788888999999999998888875 14566667777777777777777777777
Q ss_pred HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHH
Q psy3701 89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKF 168 (342)
Q Consensus 89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 168 (342)
...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..
T Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCC
Q psy3701 169 FDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIAD 247 (342)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 247 (342)
+++++..+|+++.++..+|.++...|++++|+..|+++++.+|.++.. .......+...|+ ..++...+.. ....|
T Consensus 226 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~g~-~~~A~~~~~~al~~~p 302 (388)
T 1w3b_A 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA--YCNLANALKEKGS-VAEAEDCYNTALRLCP 302 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH--HHHHHHHHHHHSC-HHHHHHHHHHHHHHCT
T ss_pred HHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcCC-HHHHHHHHHHHHhhCc
Confidence 777777777777777777777777777777777777777777765310 0001111122222 2233333333 33456
Q ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701 248 KWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327 (342)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 327 (342)
....++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..|+++++++|+++.++..++.+
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHH
Confidence 66778888888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred HHHh
Q psy3701 328 IEQL 331 (342)
Q Consensus 328 ~~~~ 331 (342)
+...
T Consensus 383 ~~~~ 386 (388)
T 1w3b_A 383 LKEM 386 (388)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7654
No 2
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.2e-35 Score=244.05 Aligned_cols=282 Identities=54% Similarity=0.964 Sum_probs=215.2
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q psy3701 33 ALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYYYL 90 (342)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 90 (342)
.++..+|..+...|++++|+..|++++ +++|+..+++++..+|.++.++..+|.++..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM 102 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 455677888888888888888888864 2555566666667777777777777777777
Q ss_pred hC-ChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHH
Q psy3701 91 IG-RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFF 169 (342)
Q Consensus 91 ~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 169 (342)
.| ++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 77 77777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCC
Q psy3701 170 DLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKW 249 (342)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (342)
++++...|+++.++..+|.++...|++++|+..++++++..+...+ ....+..
T Consensus 183 ~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------------------~~~~~~~ 235 (330)
T 3hym_B 183 SQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN---------------------------EVTVDKW 235 (330)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC---------------------------SCTTTTC
T ss_pred HHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc---------------------------cccccHH
Confidence 7777777777777777777777777777777777777776644320 0012444
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE 329 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 329 (342)
..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..++.++.
T Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HhhhcCCCCCCC
Q psy3701 330 QLIEESPPFPGN 341 (342)
Q Consensus 330 ~~~~~~~~~~~~ 341 (342)
....+.+.++++
T Consensus 316 ~~~g~~~a~~~~ 327 (330)
T 3hym_B 316 MYIGDSEAYIGA 327 (330)
T ss_dssp TTTTC-------
T ss_pred HHhCchhccCCC
Confidence 777776666653
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.1e-34 Score=245.09 Aligned_cols=297 Identities=15% Similarity=0.148 Sum_probs=231.5
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYYY 89 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 89 (342)
...+..+|.++...|++++|+..+++++ +++|+..+++++..+|+++.++..+|.++.
T Consensus 33 ~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 112 (388)
T 1w3b_A 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALV 112 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 4566789999999999999999888765 367777777777777777777777777777
Q ss_pred HhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHH
Q psy3701 90 LIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFF 169 (342)
Q Consensus 90 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 169 (342)
..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|
T Consensus 113 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 192 (388)
T 1w3b_A 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192 (388)
T ss_dssp HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77888888888877777777777777777887777788888888888888777777777777888888888888888888
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCC
Q psy3701 170 DLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADK 248 (342)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 248 (342)
+++++.+|+++.++..+|.++...|++++|+..+++++..+|++.. .......++...++ .+++...+.. ....|.
T Consensus 193 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~ 269 (388)
T 1w3b_A 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV--VHGNLACVYYEQGL-IDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTC-HHHHHHHHHHHHHTCSS
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCC
Confidence 8888888888788888888888888888888888888877776630 00001112222222 2344444444 445677
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701 249 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI 328 (342)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 328 (342)
.+.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus 270 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHh
Q psy3701 329 EQL 331 (342)
Q Consensus 329 ~~~ 331 (342)
...
T Consensus 350 ~~~ 352 (388)
T 1w3b_A 350 QQQ 352 (388)
T ss_dssp HTT
T ss_pred HHc
Confidence 554
No 4
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=5.2e-33 Score=234.49 Aligned_cols=289 Identities=12% Similarity=-0.008 Sum_probs=240.9
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC--
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK-- 109 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-- 109 (342)
..+++.+|.++...|++++|+..|++ ++..+|+++.++..+|.++...|++++|+..|++++..+|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 104 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTK------------VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 104 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH------------HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH------------HHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Confidence 34555666666666666666666666 4688999999999999999999999999999999999999
Q ss_pred -CcHHHHHHh------------hhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC
Q psy3701 110 -LFLPAWLMY------------GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIA 176 (342)
Q Consensus 110 -~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 176 (342)
+++.++..+ |.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...
T Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 184 (359)
T 3ieg_A 105 QEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK 184 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888888777 7899999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccc----------hhhHHHHhhhhHHHHHHHhch-hcc
Q psy3701 177 HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK----------WEPLLNNLGHKAEDKVKQLGG-EII 245 (342)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~ 245 (342)
|.++.++..+|.++...|++++|+..++++++..|.++....... ....+...++ ..++...+.. ...
T Consensus 185 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 185 SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDATSKYESVMKT 263 (359)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988741110000 0111222222 2233333333 223
Q ss_pred CCCCh----HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHH
Q psy3701 246 ADKWE----PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFAT 321 (342)
Q Consensus 246 ~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 321 (342)
.|... .++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++
T Consensus 264 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 343 (359)
T 3ieg_A 264 EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343 (359)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence 34433 45778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhh
Q psy3701 322 TMLSYVIEQLIE 333 (342)
Q Consensus 322 ~~l~~~~~~~~~ 333 (342)
..++.+...+.+
T Consensus 344 ~~l~~~~~~~~~ 355 (359)
T 3ieg_A 344 EGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988877654
No 5
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=100.00 E-value=3.6e-34 Score=241.44 Aligned_cols=256 Identities=10% Similarity=-0.046 Sum_probs=240.2
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC-hHHHHHHHHHHhhcC
Q psy3701 30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR-SDPARRFLGKATSLD 108 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~ 108 (342)
....++..+|.++...|++++|+..|+++ +..+|++..+|+.+|.++...|+ +++|+.+|++++.++
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~a------------l~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDA------------IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHH------------HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHH------------HHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence 35677888999999999999999999996 59999999999999999999997 999999999999999
Q ss_pred CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy3701 109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGV 188 (342)
Q Consensus 109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 188 (342)
|++..+|+.+|.++...|++++|+..|+++++++|.+..+|..+|.++...|++++|+..|+++++++|++..+|+.+|.
T Consensus 163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 242 (382)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-hcChhHH-----HHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 189 IAYQ-NHNYTVA-----ENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 189 ~~~~-~~~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
++.. .|.+++| +.+|++++.++|++ ..+|.++|.++..
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~------------------------------------~~a~~~l~~ll~~ 286 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKLVPHN------------------------------------ESAWNYLKGILQD 286 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC------------------------------------HHHHHHHHHHHTT
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHCCCC------------------------------------HHHHHHHHHHHHc
Confidence 9999 5665888 59999999999999 5899999999999
Q ss_pred hh--hHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC--------C-hHHHHHHHHHH-HhcccCchhHHhHHHHHHHH
Q psy3701 263 LK--KYEEALEFHKQALVVAPMKASTFCCIGYIQALTG--------D-LDSAVNYFHKT-MALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 263 ~g--~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~ 330 (342)
.| ++++|++.++++ +.+|+++.++..+|.++..+| + +++|+.+|+++ ++++|.....|..++..+..
T Consensus 287 ~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 287 RGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp TCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 88 799999999998 999999999999999999985 2 58999999999 99999999999999998877
Q ss_pred hhhc
Q psy3701 331 LIEE 334 (342)
Q Consensus 331 ~~~~ 334 (342)
....
T Consensus 366 ~~~~ 369 (382)
T 2h6f_A 366 KHST 369 (382)
T ss_dssp HHCC
T ss_pred Hhcc
Confidence 5443
No 6
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=4.6e-34 Score=242.01 Aligned_cols=254 Identities=17% Similarity=0.093 Sum_probs=230.9
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
+...++.+|..+...|++++|+..|+++ +..+|+++.++..+|.++...|++++|+..|+++++.+|+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a------------l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 131 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAA------------ILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN 131 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHH------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHH------------HHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3455788999999999999999999996 5889999999999999999999999999999999999999
Q ss_pred cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH----------HHHHhhhCCHHHHHHHHHHHHhhCCC--
Q psy3701 111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV----------GLECGLTNNARLASKFFDLALSIAHE-- 178 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l----------~~~~~~~~~~~~A~~~~~~~~~~~~~-- 178 (342)
++.++..+|.++...|++++|+..++++++..|.+...+..+ |.++...|++++|+..+++++...|+
T Consensus 132 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 211 (365)
T 4eqf_A 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC
T ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc
Confidence 999999999999999999999999999999999866655544 89999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHH
Q psy3701 179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGH 258 (342)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 258 (342)
++.++..+|.++...|++++|+..|+++++..|.+ ..++..+|.
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------~~~~~~l~~ 255 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED------------------------------------YSLWNRLGA 255 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHH
Confidence 89999999999999999999999999999999988 589999999
Q ss_pred HHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc------------hhHHhHHHH
Q psy3701 259 VNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD------------SFATTMLSY 326 (342)
Q Consensus 259 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~ 326 (342)
++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++++.|++ ..++..++.
T Consensus 256 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~ 335 (365)
T 4eqf_A 256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRI 335 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999883 567888888
Q ss_pred HHHHhh
Q psy3701 327 VIEQLI 332 (342)
Q Consensus 327 ~~~~~~ 332 (342)
++...+
T Consensus 336 ~~~~~g 341 (365)
T 4eqf_A 336 ALSLMD 341 (365)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 876554
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2.7e-32 Score=237.49 Aligned_cols=302 Identities=13% Similarity=-0.007 Sum_probs=247.0
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy3701 30 MKSALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCY 87 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 87 (342)
.+...++.+|..+...|++++|+..|++++ +++|+..+++++..+|+++.++..+|.+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 355677788888888888888888888765 3677777888888899999999999999
Q ss_pred HHHhCChHHHHHHHHHHhhcCCCcH---HHHHHh------------hhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701 88 YYLIGRSDPARRFLGKATSLDKLFL---PAWLMY------------GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV 152 (342)
Q Consensus 88 ~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 152 (342)
+...|++++|+..|++++..+|++. .++..+ |.++...|++++|+..++++++..|.+..++..+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 183 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 183 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999999999999999999998887 666555 6668889999999999999999999988889999
Q ss_pred HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccc----------h
Q psy3701 153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK----------W 222 (342)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~----------~ 222 (342)
|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++...|++........ .
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887741110000 0
Q ss_pred hhHHHHhhhhHHHHHHHhch-hccCCCC----hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHh
Q psy3701 223 EPLLNNLGHKAEDKVKQLGG-EIIADKW----EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALT 297 (342)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 297 (342)
...+...++ ..++...+.. ....|.. ...+..+|.++...|++++|+..++++++.+|+++.++..+|.++...
T Consensus 264 ~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 342 (450)
T 2y4t_A 264 AEELIRDGR-YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE 342 (450)
T ss_dssp HHHHHHHTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 112222222 2233344433 2334443 347899999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 298 GDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 298 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
|++++|+..|+++++++|+++.++..++.+.....
T Consensus 343 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 343 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999997765543
No 8
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=1e-32 Score=233.78 Aligned_cols=253 Identities=20% Similarity=0.133 Sum_probs=238.9
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF 111 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 111 (342)
...++.+|..+...|++++|+..|+++ +..+|.++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~a------------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 131 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAA------------VQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 131 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHH------------HHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC
Confidence 456778999999999999999999996 58899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHH----------------HHHHHHhhhCCHHHHHHHHHHHHhh
Q psy3701 112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPAL----------------YVGLECGLTNNARLASKFFDLALSI 175 (342)
Q Consensus 112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------~l~~~~~~~~~~~~A~~~~~~~~~~ 175 (342)
+.++..+|.++...|++++|+..+++++...|.+...+. .++.++ ..|++++|+..+++++..
T Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 132 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999877765 466666 999999999999999999
Q ss_pred CCC--ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHH
Q psy3701 176 AHE--DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLL 253 (342)
Q Consensus 176 ~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (342)
.|+ ++.++..+|.++...|++++|+..+++++...|.+ ..++
T Consensus 211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------------~~~~ 254 (368)
T 1fch_A 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND------------------------------------YLLW 254 (368)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------------------------------------HHHH
Confidence 999 89999999999999999999999999999999988 5899
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc-----------hhHHh
Q psy3701 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD-----------SFATT 322 (342)
Q Consensus 254 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~ 322 (342)
..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++++.|++ ..++.
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHhhh
Q psy3701 323 MLSYVIEQLIE 333 (342)
Q Consensus 323 ~l~~~~~~~~~ 333 (342)
.++.++...++
T Consensus 335 ~l~~~~~~~g~ 345 (368)
T 1fch_A 335 TLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhCC
Confidence 99999987764
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-32 Score=244.75 Aligned_cols=270 Identities=32% Similarity=0.551 Sum_probs=234.4
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy3701 30 MKSALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCY 87 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 87 (342)
.+..++..+|..+...|++++|+..|++++ .++|..++++++...|+++.++..+|.+
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 456778889999999999999999999875 3677788888888888888888888888
Q ss_pred HHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHH
Q psy3701 88 YYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASK 167 (342)
Q Consensus 88 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 167 (342)
|...|++++|+.+|+++++.+|.+..+|..+|.++...|++++|+..|+++++..|.+..++..++.++...|++++|++
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCC
Q psy3701 168 FFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIAD 247 (342)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
.|+++++..|.++.++..+|.++...|++++|+..|+++++..|..+ ..|
T Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------------------~~p 512 (597)
T 2xpi_A 463 YLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ------------------------------SNE 512 (597)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC------------------------------CCS
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc------------------------------cch
Confidence 88888888888888888888888888888888888888888766532 122
Q ss_pred C-ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701 248 K-WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326 (342)
Q Consensus 248 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 326 (342)
. ...++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..++.
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 2 257999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHH
Q psy3701 327 VIE 329 (342)
Q Consensus 327 ~~~ 329 (342)
++.
T Consensus 593 ~~~ 595 (597)
T 2xpi_A 593 ALE 595 (597)
T ss_dssp TTC
T ss_pred HHh
Confidence 764
No 10
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=100.00 E-value=8e-32 Score=224.44 Aligned_cols=255 Identities=16% Similarity=0.113 Sum_probs=236.7
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
....++.+|..+...|++++|+..|+++ +..+|+++.++..+|.++...|++++|+..++++++.+|.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 87 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAV------------CQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 87 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Confidence 4456778999999999999999999996 5889999999999999999999999999999999999999
Q ss_pred cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH--------------HH-HHhhhCCHHHHHHHHHHHHhh
Q psy3701 111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV--------------GL-ECGLTNNARLASKFFDLALSI 175 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~ 175 (342)
++.++..+|.++...|++++|+..+++++...|.+...+..+ +. ++...|++++|+..++++++.
T Consensus 88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 167 (327)
T 3cv0_A 88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999988877776 66 688999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHH
Q psy3701 176 AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNN 255 (342)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (342)
.|.++.++..+|.++...|++++|+..++++++..|.+ ..++..
T Consensus 168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~ 211 (327)
T 3cv0_A 168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD------------------------------------AQLWNK 211 (327)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc------------------------------------HHHHHH
Confidence 99999999999999999999999999999999999888 589999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC------------chhHHhH
Q psy3701 256 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD------------DSFATTM 323 (342)
Q Consensus 256 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~ 323 (342)
+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+.+|+++++..|+ ++.++..
T Consensus 212 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (327)
T 3cv0_A 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDF 291 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 7889999
Q ss_pred HHHHHHHhhh
Q psy3701 324 LSYVIEQLIE 333 (342)
Q Consensus 324 l~~~~~~~~~ 333 (342)
++.++...++
T Consensus 292 l~~~~~~~g~ 301 (327)
T 3cv0_A 292 FRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 9998877653
No 11
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-32 Score=215.09 Aligned_cols=201 Identities=13% Similarity=0.016 Sum_probs=179.7
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154 (342)
Q Consensus 75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 154 (342)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh-----------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchh
Q psy3701 155 ECGLT-----------NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE 223 (342)
Q Consensus 155 ~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 223 (342)
++... |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++ ++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~---------- 150 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT---------- 150 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC----------
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc----------
Confidence 99999 999999999999999999999999999999999999999999999999999 65
Q ss_pred hHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHH
Q psy3701 224 PLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSA 303 (342)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 303 (342)
+.++.++|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus 151 --------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 151 --------------------------PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp --------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------
T ss_pred --------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence 689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy3701 304 VNYFHKTMA 312 (342)
Q Consensus 304 ~~~~~~al~ 312 (342)
+..|+++..
T Consensus 205 ~~~~~~~~~ 213 (217)
T 2pl2_A 205 ARAAALEHH 213 (217)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 999998754
No 12
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=100.00 E-value=2.1e-32 Score=222.24 Aligned_cols=252 Identities=17% Similarity=0.120 Sum_probs=225.4
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
+..+++..|..+...|++++|+..|+++ ++.+|+++.++..+|.++...|++++|+..++++++ .|.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~------------l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~ 68 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKL------------EAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVN 68 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHH------------HHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSC
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHH------------HHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccC
Confidence 3456778999999999999999999996 588999999999999999999999999999999999 444
Q ss_pred c----HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701 111 F----LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM 186 (342)
Q Consensus 111 ~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 186 (342)
+ ..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+
T Consensus 69 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 148 (272)
T 3u4t_A 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYEL 148 (272)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence 4 445999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh-
Q psy3701 187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK- 265 (342)
Q Consensus 187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 265 (342)
|...+..+++++|+..|+++++..|.+ ..++..+|.++...|+
T Consensus 149 ~~~~~~~~~~~~A~~~~~~a~~~~p~~------------------------------------~~~~~~~~~~~~~~~~~ 192 (272)
T 3u4t_A 149 GQAYYYNKEYVKADSSFVKVLELKPNI------------------------------------YIGYLWRARANAAQDPD 192 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTC------------------------------------HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccc------------------------------------hHHHHHHHHHHHHcCcc
Confidence 955555679999999999999999988 5899999999999999
Q ss_pred --HHHHHHHHHHHHhhC---CCc-----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701 266 --YEEALEFHKQALVVA---PMK-----ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331 (342)
Q Consensus 266 --~~~A~~~~~~al~~~---~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 331 (342)
+++|+..++++++.. |+. ..++..+|.++...|++++|+.+|+++++++|+++.++..++.+....
T Consensus 193 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp CSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 999999999999886 442 368899999999999999999999999999999999999988776543
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.1e-31 Score=221.17 Aligned_cols=250 Identities=14% Similarity=0.113 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc-
Q psy3701 48 RALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN- 126 (342)
Q Consensus 48 ~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g- 126 (342)
+..|...+..+.+++|+..+++++..+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.++...|
T Consensus 26 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 26 VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhh
Confidence 5677888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHH
Q psy3701 127 EHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEA 206 (342)
Q Consensus 127 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 206 (342)
++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|++...+..+|.++...|++++|+..++++
T Consensus 106 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC------
Q psy3701 207 LSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA------ 280 (342)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------ 280 (342)
++..|.+ ..++..+|.++...|++++|+..++++++..
T Consensus 186 l~~~~~~------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 229 (330)
T 3hym_B 186 LSIAPED------------------------------------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229 (330)
T ss_dssp HTTCTTC------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS
T ss_pred HHhCCCC------------------------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc
Confidence 9999988 5899999999999999999999999999986
Q ss_pred ---CCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701 281 ---PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE 333 (342)
Q Consensus 281 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 333 (342)
|..+.++..+|.++...|++++|+.+|+++++++|+++.++..++.++...++
T Consensus 230 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 285 (330)
T 3hym_B 230 VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN 285 (330)
T ss_dssp CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence 66778999999999999999999999999999999999999999999877553
No 14
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=215.86 Aligned_cols=240 Identities=12% Similarity=0.072 Sum_probs=226.6
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
.+..+..+|..+...|++++|+..|++++ ..+ .++.++..+|.++...|++++|+..++++++.+|+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~------------~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 70 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAW------------ELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------HHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH------------Hhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 46678899999999999999999999974 666 78999999999999999999999999999999887
Q ss_pred c-------HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHH
Q psy3701 111 F-------LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVI 183 (342)
Q Consensus 111 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 183 (342)
+ +.++..+|.++...|++++|+..+++++...|. +.++...|++++|+..+++++..+|.++.++
T Consensus 71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 142 (258)
T 3uq3_A 71 MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEA 142 (258)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHH
Confidence 7 789999999999999999999999999999887 5678888999999999999999999999999
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh
Q psy3701 184 HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL 263 (342)
Q Consensus 184 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (342)
..+|.++...|++++|+..++++++..|.+ ..++..+|.++...
T Consensus 143 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------------------~~~~~~l~~~~~~~ 186 (258)
T 3uq3_A 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPED------------------------------------ARGYSNRAAALAKL 186 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCccc------------------------------------HHHHHHHHHHHHHh
Confidence 999999999999999999999999999988 58999999999999
Q ss_pred hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc------cCchhHHhHHHHH
Q psy3701 264 KKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK------RDDSFATTMLSYV 327 (342)
Q Consensus 264 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~ 327 (342)
|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++++ |++..++..+..+
T Consensus 187 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 9888888887765
No 15
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=100.00 E-value=8e-32 Score=227.12 Aligned_cols=225 Identities=9% Similarity=0.017 Sum_probs=214.6
Q ss_pred HhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhcc-HHHHHHHHHHHhccCCCCchHH
Q psy3701 71 VDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE-HDQAMAAYFNAFNLFKGCHLPA 149 (342)
Q Consensus 71 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~ 149 (342)
+..+|++..+|..+|.++...|++++|+..|++++.++|++..+|..+|.++...|+ +++|+..|+++++++|++..+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 356788899999999999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHh
Q psy3701 150 LYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNL 229 (342)
Q Consensus 150 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 229 (342)
..+|.++..+|++++|+..|++++.++|++..+|..+|.++...|++++|+..|+++++++|.+
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~---------------- 233 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN---------------- 233 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC----------------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhchhccCCCChHHHHHHHHHHHH-hhhHHHH-----HHHHHHHHhhCCCchHHHHHHHHHHHHhC--ChH
Q psy3701 230 GHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEA-----LEFHKQALVVAPMKASTFCCIGYIQALTG--DLD 301 (342)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~l~~~~~~~g--~~~ 301 (342)
..+|+++|.++.. .|..++| +.+|++++.++|++..+|..+|.++...| +++
T Consensus 234 --------------------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~ 293 (382)
T 2h6f_A 234 --------------------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYP 293 (382)
T ss_dssp --------------------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCH
T ss_pred --------------------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchH
Confidence 6899999999999 5555777 59999999999999999999999999988 699
Q ss_pred HHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 302 SAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 302 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
+|++.++++ +.+|+++.++..++.++...+
T Consensus 294 ~a~~~~~~~-~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 294 NLLNQLLDL-QPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp HHHHHHHHH-TTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-ccCCCCHHHHHHHHHHHHHHh
Confidence 999999998 999999999999999998764
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=6.2e-30 Score=215.63 Aligned_cols=287 Identities=16% Similarity=0.072 Sum_probs=246.1
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
+...++.+|..+...|++++|+..|+++ +..+|+++.++..+|.++...|++++|+..++++++.+|+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~------------l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 69 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAA------------VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD 69 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3567788999999999999999999996 5889999999999999999999999999999999999999
Q ss_pred cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCC---CCchHHHHH------------HHHHhhhCCHHHHHHHHHHHHhh
Q psy3701 111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK---GCHLPALYV------------GLECGLTNNARLASKFFDLALSI 175 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~ 175 (342)
++.++..+|.++...|++++|+..++++++..| .+..++..+ |.++...|++++|+..++++++.
T Consensus 70 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 149 (359)
T 3ieg_A 70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 877777766 78999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHHH
Q psy3701 176 AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLN 254 (342)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 254 (342)
.|.++.++..+|.++...|++++|+..++++++..|.++... .....++...++. .++...+.. ....|.....+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~la~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~ 226 (359)
T 3ieg_A 150 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF--YKISTLYYQLGDH-ELSLSEVRECLKLDQDHKRCFA 226 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHH--HHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCH-HHHHHHHHHHHhhCccchHHHH
Confidence 999999999999999999999999999999999998874110 1111222222222 233333333 334455444433
Q ss_pred ------------HHHHHHHHhhhHHHHHHHHHHHHhhCCCchH----HHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 255 ------------NLGHVNRKLKKYEEALEFHKQALVVAPMKAS----TFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 255 ------------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
.+|.++...|++++|+..++++++..|+++. ++..+|.++...|++++|+..|+++++.+|+++
T Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 306 (359)
T 3ieg_A 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV 306 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH
Confidence 4588899999999999999999999999874 466799999999999999999999999999999
Q ss_pred hHHhHHHHHHHHhh
Q psy3701 319 FATTMLSYVIEQLI 332 (342)
Q Consensus 319 ~~~~~l~~~~~~~~ 332 (342)
.++..++.++...+
T Consensus 307 ~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 307 NALKDRAEAYLIEE 320 (359)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999887654
No 17
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.98 E-value=5.8e-30 Score=230.63 Aligned_cols=284 Identities=15% Similarity=0.051 Sum_probs=228.1
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH
Q psy3701 33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL 112 (342)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 112 (342)
.++..++..+...|++++|+..|+++. .. |.+..++..+|.++...|++++|+..|+++++.+|.+.
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~------------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 339 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSIN------------GL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNL 339 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTST------------TG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhh------------cC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccH
Confidence 334445778888999999999998863 33 67788888888888888888888888888888888888
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy3701 113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ 192 (342)
Q Consensus 113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (342)
.++..++.++...|++++|+..++++++..|.+..++..+|.++...|++++|++.|+++++..|.+..+|..+|.++..
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (597)
T 2xpi_A 340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI 419 (597)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701 193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALE 271 (342)
Q Consensus 193 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 271 (342)
.|++++|+..|+++++..|.+... .......+...| ..+++...+.. ....|..+.++..+|.++.+.|++++|+.
T Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 420 EGEHDQAISAYTTAARLFQGTHLP--YLFLGMQHMQLG-NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp HTCHHHHHHHHHHHHHTTTTCSHH--HHHHHHHHHHHT-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCccchHH--HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 888888888888888887766310 001111222222 22334444433 33455567899999999999999999999
Q ss_pred HHHHHHhh------CCCc-hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 272 FHKQALVV------APMK-ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 272 ~~~~al~~------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
.|+++++. +|+. ..++..+|.++...|++++|+..|+++++.+|+++.++..++.++...+
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 99999998 5654 7899999999999999999999999999999999999999999887654
No 18
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.98 E-value=1.9e-29 Score=219.53 Aligned_cols=282 Identities=16% Similarity=0.082 Sum_probs=241.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhcc
Q psy3701 48 RALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE 127 (342)
Q Consensus 48 ~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 127 (342)
+..+..++..+.+++|+..+++++..+|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 34566777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCc---hHHHHH------------HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy3701 128 HDQAMAAYFNAFNLFKGCH---LPALYV------------GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ 192 (342)
Q Consensus 128 ~~~A~~~~~~al~~~~~~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (342)
+++|+..|+++++.+|.+. .++..+ |.++...|++++|+..+++++...|.++.++..+|.++..
T Consensus 110 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIK 189 (450)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999887 665554 6679999999999999999999999999999999999999
Q ss_pred hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHH------------HHH
Q psy3701 193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNL------------GHV 259 (342)
Q Consensus 193 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l------------~~~ 259 (342)
.|++++|+..|+++++.+|.+... .......+...++ ..++...+.. ....|.....+..+ |.+
T Consensus 190 ~g~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 190 EGEPRKAISDLKAASKLKNDNTEA--FYKISTLYYQLGD-HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp TTCGGGGHHHHHHHHHHHCSCHHH--HHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCC-HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877311 0111122222222 2334444433 34456566666555 999
Q ss_pred HHHhhhHHHHHHHHHHHHhhCCCch----HHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 260 NRKLKKYEEALEFHKQALVVAPMKA----STFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 260 ~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
+...|++++|+..|+++++..|+++ ..+..+|.++...|++++|+..++++++++|+++.++..++.++...+
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 9999999999999999999999985 478899999999999999999999999999999999999998886654
No 19
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=8.9e-30 Score=225.18 Aligned_cols=257 Identities=16% Similarity=0.099 Sum_probs=240.0
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcC
Q psy3701 29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLD 108 (342)
Q Consensus 29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 108 (342)
.....+++.+|.++...|++++|+..|+++ +..+|. +.++..+|.++...|++++|+..+++++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~------------l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 300 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKA------------IELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLD 300 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHH------------HHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence 455678888999999999999999999996 578898 9999999999999999999999999999999
Q ss_pred CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy3701 109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGV 188 (342)
Q Consensus 109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 188 (342)
|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|+++.++..+|.
T Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 380 (514)
T 2gw1_A 301 SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAE 380 (514)
T ss_dssp TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH---hhh
Q psy3701 189 IAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK---LKK 265 (342)
Q Consensus 189 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~ 265 (342)
++...|++++|+..+++++...|.++ .......++..+|.++.. .|+
T Consensus 381 ~~~~~~~~~~A~~~~~~a~~~~~~~~------------------------------~~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 381 ILTDKNDFDKALKQYDLAIELENKLD------------------------------GIYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSS------------------------------SCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccc------------------------------hHHHHHHHHHHHHHHHhhhhhcCC
Confidence 99999999999999999999999884 111113489999999999 999
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701 266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI 328 (342)
Q Consensus 266 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 328 (342)
+++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+....
T Consensus 431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998887765443
No 20
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.98 E-value=9.4e-30 Score=226.35 Aligned_cols=285 Identities=14% Similarity=0.117 Sum_probs=190.5
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q psy3701 30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK 109 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 109 (342)
..+..++.+|..+...|++++|+..|+++ +..+|+++.++..+|.++...|++++|+..|+++++.+|
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~a------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 90 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYA------------IELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 90 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHH------------HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHH------------HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 45678889999999999999999999996 588999999999999999999999999999999999999
Q ss_pred CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHH----------------------------------------
Q psy3701 110 LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPA---------------------------------------- 149 (342)
Q Consensus 110 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------------------- 149 (342)
+++.++..+|.++...|++++|+..|+ ++...|+....+
T Consensus 91 ~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 169 (537)
T 3fp2_A 91 DHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS 169 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH
Confidence 999999999999999999999988884 665555432211
Q ss_pred ----------------------------HHHHH--------HHhhhCCHHHHHHHHHHHHhhCCCChH-------HHHHH
Q psy3701 150 ----------------------------LYVGL--------ECGLTNNARLASKFFDLALSIAHEDPF-------VIHEM 186 (342)
Q Consensus 150 ----------------------------~~l~~--------~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l 186 (342)
..++. .....|++++|+..++++++..|+++. ++..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 170 FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYT 249 (537)
T ss_dssp HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHH
Confidence 00111 111123566666666666666666644 35555
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhh
Q psy3701 187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKK 265 (342)
Q Consensus 187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~ 265 (342)
|.++...|++++|+..++++++.+|... ........+...++ ..++...+.. ....|..+.++..+|.++...|+
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLHPTPN---SYIFLALTLADKEN-SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHH---HHHHHHHHTCCSSC-CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHhcC-HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Confidence 6666666666666666666666665410 00000011111111 1222222222 23344556677777777777777
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701 266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331 (342)
Q Consensus 266 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 331 (342)
+++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..++.++...
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR 391 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 777777777777777777777777777777777777777777777777777777777776666543
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=3.1e-29 Score=223.03 Aligned_cols=250 Identities=14% Similarity=0.081 Sum_probs=230.6
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF 111 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 111 (342)
..++..+|.++...|++++|+..|+++ +..+|+ +.++..+|.++...|++++|+..+++++..+|++
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~------------~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 309 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQES------------INLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY 309 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHH------------HhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC
Confidence 456778999999999999999999996 578898 9999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701 112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY 191 (342)
Q Consensus 112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (342)
+.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|+++.++..+|.++.
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh--------
Q psy3701 192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL-------- 263 (342)
Q Consensus 192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 263 (342)
..|++++|+..|+++++..|.+. ........+..+|.++...
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 439 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQE------------------------------KIHVGIGPLIGKATILARQSSQDPTQL 439 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCS------------------------------SCSSTTHHHHHHHHHHHHHHTC----C
T ss_pred HhCCHHHHHHHHHHHHHcCCcch------------------------------hhHHHHHHHHHHHHHHHHHhhccchhh
Confidence 99999999999999999999874 1111234567788999999
Q ss_pred --hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701 264 --KKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML 324 (342)
Q Consensus 264 --g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 324 (342)
|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++++.|+++.....+
T Consensus 440 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 440 DEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988765544
No 22
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.97 E-value=2.4e-30 Score=202.66 Aligned_cols=197 Identities=16% Similarity=0.088 Sum_probs=176.5
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF 111 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 111 (342)
...++.+|.++...|++++|+..|+++ ++.+|+++.+++.+|.++...|++++|+..|+++++++|++
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~a------------l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 72 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERA------------LKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHH------------HTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 456778999999999999999999996 59999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHhh-----------ccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh
Q psy3701 112 LPAWLMYGHSFAVE-----------NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180 (342)
Q Consensus 112 ~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 180 (342)
+.++..+|.++... |++++|+..++++++++|+++.++..+|.++...|++++|+..|+++++++ +++
T Consensus 73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~ 151 (217)
T 2pl2_A 73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch
Confidence 99999999999999 999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHH
Q psy3701 181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN 260 (342)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (342)
.++..+|.++...|++++|+..|+++++.+|++ ..++..+|.++
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~------------------------------------~~~~~~la~~~ 195 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKD------------------------------------LDLRVRYASAL 195 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------hHHHHHHHHHH
Confidence 999999999999999999999999999999998 58999999999
Q ss_pred HHhhhHHHHHHHHHHHH
Q psy3701 261 RKLKKYEEALEFHKQAL 277 (342)
Q Consensus 261 ~~~g~~~~A~~~~~~al 277 (342)
...|++++|+..|+++-
T Consensus 196 ~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 196 LLKGKAEEAARAAALEH 212 (217)
T ss_dssp TC---------------
T ss_pred HHccCHHHHHHHHHHHh
Confidence 99999999999998864
No 23
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=224.13 Aligned_cols=217 Identities=16% Similarity=0.062 Sum_probs=143.9
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701 112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY 191 (342)
Q Consensus 112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (342)
+.++..+|.++...|++++|+..++++++..|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH
Confidence 344555566666666666666666666666666 5566666666666666666666666666666666666666666666
Q ss_pred HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHH
Q psy3701 192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEAL 270 (342)
Q Consensus 192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 270 (342)
..|++++|+..++++++..|.+... .......+...+ ...++...+.. ....|....++..+|.++...|++++|+
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFP--YIQLACLAYREN-KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHH--HHHHHHHTTTTT-CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHH--HHHHHHHHHHcC-CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 6666666666666666666655310 000001111112 22233333333 3345556678888888888888888888
Q ss_pred HHHHHHHhhCCCchH------HHHHHHHHHHH---hCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 271 EFHKQALVVAPMKAS------TFCCIGYIQAL---TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 271 ~~~~~al~~~~~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
..++++++..|+++. ++..+|.++.. .|++++|+..|+++++.+|+++.++..++.++...+
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 888888888877754 88888888888 888888888888888888888888888888876654
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=1.7e-30 Score=220.18 Aligned_cols=246 Identities=14% Similarity=0.110 Sum_probs=215.7
Q ss_pred HHHHhhccHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH
Q psy3701 40 RVYEALENRALAAD-CYKGALLADLFKLAHELVDLYPDS----AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA 114 (342)
Q Consensus 40 ~~~~~~~~~~~A~~-~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 114 (342)
.++...|+|++|+. .|++++ ...|.+ ...++.+|.++...|++++|+..|+++++.+|.++.+
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 100 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGY------------QFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA 100 (368)
T ss_dssp -------------CHHHHCCC------------CCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH
T ss_pred hhhHHHHHHHHHHhhhhhHHH------------hcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 36677789999998 888863 666665 4568999999999999999999999999999999999
Q ss_pred HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHH----------
Q psy3701 115 WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIH---------- 184 (342)
Q Consensus 115 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---------- 184 (342)
+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|.+...+.
T Consensus 101 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 1fch_A 101 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG 180 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999877664
Q ss_pred ------HHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHH
Q psy3701 185 ------EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGH 258 (342)
Q Consensus 185 ------~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 258 (342)
.++.++ ..|++++|+..++++++..|... .+.++..+|.
T Consensus 181 ~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~----------------------------------~~~~~~~l~~ 225 (368)
T 1fch_A 181 LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI----------------------------------DPDVQCGLGV 225 (368)
T ss_dssp -----CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC----------------------------------CHHHHHHHHH
T ss_pred ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc----------------------------------cHHHHHHHHH
Confidence 466666 99999999999999999999831 1579999999
Q ss_pred HHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 259 VNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 259 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.++...+
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887654
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=1.4e-30 Score=220.57 Aligned_cols=219 Identities=15% Similarity=0.108 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 157 (342)
...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCHHHHHHHHHHHHhhCCCChHHHHH----------HHHHHHHhcChhHHHHHHHHHHHhhhh--cCccccccchhhH
Q psy3701 158 LTNNARLASKFFDLALSIAHEDPFVIHE----------MGVIAYQNHNYTVAENCFMEALSKVKQ--LGGEIIADKWEPL 225 (342)
Q Consensus 158 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~ 225 (342)
..|++++|+..++++++..|++...+.. +|.++...|++++|+..++++++..|. +
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------ 212 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID------------ 212 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC------------
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC------------
Confidence 9999999999999999999886665554 499999999999999999999999988 5
Q ss_pred HHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHH
Q psy3701 226 LNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVN 305 (342)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 305 (342)
+.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.
T Consensus 213 ------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 213 ------------------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp ------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 306 YFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 306 ~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
.|+++++++|+++.++..++.++...+
T Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 269 AYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 999999999999999999999987764
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.97 E-value=1.1e-28 Score=201.55 Aligned_cols=238 Identities=15% Similarity=0.051 Sum_probs=210.9
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc--C
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL--D 108 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~ 108 (342)
.....+.++++|...|+++.|+..++.. +|....++..++..+...++.++|++.+++++.. +
T Consensus 33 ~~e~~~~l~r~yi~~g~~~~al~~~~~~---------------~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~ 97 (291)
T 3mkr_A 33 DVERDVFLYRAYLAQRKYGVVLDEIKPS---------------SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVD 97 (291)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHSCTT---------------SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCC
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHhccc---------------CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccC
Confidence 3455567899999999999999877552 5667888999999999999999999999998875 6
Q ss_pred CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH-
Q psy3701 109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG- 187 (342)
Q Consensus 109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~- 187 (342)
|+++.+++.+|.++...|++++|+..+++ |.+..++..+|.++..+|++++|++.++++++.+|++.......+
T Consensus 98 P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~ 172 (291)
T 3mkr_A 98 VTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW 172 (291)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHH
Confidence 99999999999999999999999999988 788899999999999999999999999999999998865544433
Q ss_pred -HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701 188 -VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY 266 (342)
Q Consensus 188 -~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (342)
.++...|++++|+..|+++++..|.+ +.++.++|.++...|++
T Consensus 173 ~~l~~~~~~~~eA~~~~~~~l~~~p~~------------------------------------~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 173 VSLAAGGEKLQDAYYIFQEMADKCSPT------------------------------------LLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHSCCC------------------------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHhCchHHHHHHHHHHHHHHhCCCc------------------------------------HHHHHHHHHHHHHcCCH
Confidence 33445589999999999999998887 68999999999999999
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHH-HHHHHHHHHhcccCchhHHhHH
Q psy3701 267 EEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS-AVNYFHKTMALKRDDSFATTML 324 (342)
Q Consensus 267 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~l 324 (342)
++|+..|+++++.+|+++.++.++|.++...|++++ +..+++++++++|+++.+....
T Consensus 217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR 275 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 999999999999999999999999999999999976 5789999999999999877643
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=1.1e-29 Score=211.47 Aligned_cols=240 Identities=13% Similarity=0.052 Sum_probs=222.3
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
...++..+|.++...|++++|+..|+++ +..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 121 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHA------------RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4567778999999999999999999996 5789999999999999999999999999999999999999
Q ss_pred cHHHHHHh--------------hh-HHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh
Q psy3701 111 FLPAWLMY--------------GH-SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSI 175 (342)
Q Consensus 111 ~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 175 (342)
+...+..+ +. ++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 201 (327)
T 3cv0_A 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL 201 (327)
T ss_dssp TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 98888777 66 7889999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHH
Q psy3701 176 AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNN 255 (342)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (342)
.|+++.++..+|.++...|++++|+..++++++..|.+ ..++..
T Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------------------~~~~~~ 245 (327)
T 3cv0_A 202 RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY------------------------------------VRVMYN 245 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------------------------------------HHHHHH
Confidence 99999999999999999999999999999999999988 589999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCC------------chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 256 LGHVNRKLKKYEEALEFHKQALVVAPM------------KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 256 l~~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
+|.++...|++++|+..++++++..|+ +..++..+|.++..+|++++|...++++++..|++.
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 999999999999999999999999999 789999999999999999999999999988877654
No 28
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.97 E-value=1.8e-29 Score=201.35 Aligned_cols=218 Identities=16% Similarity=0.103 Sum_probs=189.3
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC 156 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 156 (342)
.+..++.+|.++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHH
Q psy3701 157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK 236 (342)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|.+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------- 158 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND----------------------- 158 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC-----------------------
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-----------------------
Confidence 999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701 237 VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316 (342)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 316 (342)
..++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.+++++++++|+
T Consensus 159 -------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 159 -------------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp -------------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHhHHHHHHHH
Q psy3701 317 DSFATTMLSYVIEQ 330 (342)
Q Consensus 317 ~~~~~~~l~~~~~~ 330 (342)
++.++..++.+...
T Consensus 226 ~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 226 HMLALHAKKLLGHH 239 (243)
T ss_dssp CHHHHHHHTC----
T ss_pred hHHHHHHHHHHHhh
Confidence 99999888766543
No 29
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.97 E-value=2.2e-28 Score=196.17 Aligned_cols=217 Identities=17% Similarity=0.057 Sum_probs=207.1
Q ss_pred hcCCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHH
Q psy3701 72 DLYPDS-AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPAL 150 (342)
Q Consensus 72 ~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 150 (342)
..+|.+ +.+++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 456766 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH
Q psy3701 151 YVGLECGLTNNARLASKFFDLALS--IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN 228 (342)
Q Consensus 151 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 228 (342)
.+|.++...|++++|+..+++++. ..|.+..++..+|.++...|++++|+..++++++..|.+
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------------- 174 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ--------------- 174 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc---------------
Confidence 999999999999999999999999 888889999999999999999999999999999999887
Q ss_pred hhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701 229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFH 308 (342)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 308 (342)
..++..+|.++...|++++|+..++++++..|.+...+..++.++...|++++|..+++
T Consensus 175 ---------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 233 (252)
T 2ho1_A 175 ---------------------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGL 233 (252)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCchhHHhHH
Q psy3701 309 KTMALKRDDSFATTML 324 (342)
Q Consensus 309 ~al~~~p~~~~~~~~l 324 (342)
++++..|+++.....+
T Consensus 234 ~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 234 QLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHCTTSHHHHHHH
T ss_pred HHHHHCCCCHHHHHHH
Confidence 9999999999876654
No 30
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.97 E-value=4.7e-28 Score=190.62 Aligned_cols=217 Identities=15% Similarity=0.087 Sum_probs=206.3
Q ss_pred hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHH
Q psy3701 72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY 151 (342)
Q Consensus 72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 151 (342)
+..|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++...|.+..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh-CCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH
Q psy3701 152 VGLECGLT-NNARLASKFFDLALS--IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN 228 (342)
Q Consensus 152 l~~~~~~~-~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 228 (342)
+|.++... |++++|+..+++++. ..|.+..++..+|.++...|++++|+..++++++..|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------- 146 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF--------------- 146 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------
Confidence 99999999 999999999999999 667778999999999999999999999999999999887
Q ss_pred hhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC-CchHHHHHHHHHHHHhCChHHHHHHH
Q psy3701 229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP-MKASTFCCIGYIQALTGDLDSAVNYF 307 (342)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 307 (342)
..++..+|.++...|++++|+..++++++..| .+...+..++.++...|+.++|..++
T Consensus 147 ---------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 147 ---------------------PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp ---------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 58999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHhcccCchhHHhHH
Q psy3701 308 HKTMALKRDDSFATTML 324 (342)
Q Consensus 308 ~~al~~~p~~~~~~~~l 324 (342)
+.+.+.+|+++.+...+
T Consensus 206 ~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 206 AQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHCTTCHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHh
Confidence 99999999999887665
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=1e-27 Score=209.89 Aligned_cols=295 Identities=15% Similarity=0.074 Sum_probs=199.8
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHhc-----
Q psy3701 30 MKSALLLLKGRVYEALENRALAADCYKGAL-------------------------------LADLFKLAHELVDL----- 73 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-------------------------------~~~a~~~~~~~~~~----- 73 (342)
..+.++..+|.++..+|++++|++.|++++ +++|...+++++..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 345677788999999999999999998874 13344444444332
Q ss_pred ---CCCcHHHHHHHHHHHHHhC--ChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhh---ccHHHHHHHHHHHhccCCCC
Q psy3701 74 ---YPDSAIAWYAVGCYYYLIG--RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE---NEHDQAMAAYFNAFNLFKGC 145 (342)
Q Consensus 74 ---~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~ 145 (342)
.+..+.++..+|.++...| ++++|+.+|+++++++|+++.++..++.++... ++.++|+..++++++++|.+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 2233455555555444432 455666666666666666666666655554332 34455666666666666666
Q ss_pred chHHHHHHHHHhh----hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccc
Q psy3701 146 HLPALYVGLECGL----TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK 221 (342)
Q Consensus 146 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 221 (342)
..++..+|..+.. .+++++|++.+++++..+|+++.++..+|.++...|++++|+..++++++..|++.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~------- 281 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA------- 281 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-------
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH-------
Confidence 6666555554433 35677888888888888898999999999999999999999999999999999874
Q ss_pred hhhHHHHhhhh-------------------------HHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy3701 222 WEPLLNNLGHK-------------------------AEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ 275 (342)
Q Consensus 222 ~~~~~~~~~~~-------------------------~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 275 (342)
.++..+|.. ...+...+.. ....|....++..+|.++...|++++|+.+|++
T Consensus 282 --~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 282 --YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp --HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 222222211 1223333333 345667778899999999999999999999999
Q ss_pred HHhhCCCchH---HHHHHHHH-HHHhCChHHHHHHHHHHHhcc------------------------cCchhHHhHHHHH
Q psy3701 276 ALVVAPMKAS---TFCCIGYI-QALTGDLDSAVNYFHKTMALK------------------------RDDSFATTMLSYV 327 (342)
Q Consensus 276 al~~~~~~~~---~~~~l~~~-~~~~g~~~~A~~~~~~al~~~------------------------p~~~~~~~~l~~~ 327 (342)
+++..|++.. ++..+|.+ ....|++++|+.+|++++++. |+++.++..||.+
T Consensus 360 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~ 439 (472)
T 4g1t_A 360 EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFL 439 (472)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHH
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999887653 45666654 457899999999999998775 5556677777777
Q ss_pred HHHhhh
Q psy3701 328 IEQLIE 333 (342)
Q Consensus 328 ~~~~~~ 333 (342)
+...++
T Consensus 440 ~~~~g~ 445 (472)
T 4g1t_A 440 QELNEK 445 (472)
T ss_dssp HHHHHH
T ss_pred HHHcCC
Confidence 766554
No 32
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.97 E-value=9.3e-29 Score=197.13 Aligned_cols=224 Identities=16% Similarity=0.105 Sum_probs=188.4
Q ss_pred hhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701 27 QSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATS 106 (342)
Q Consensus 27 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 106 (342)
.....+..++.+|..+...|++++|+..|+++ +..+|.++.++..+|.++...|++++|+..++++++
T Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 85 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKA------------IEENKEDAIPYINFANLLSSVNELERALAFYDKALE 85 (243)
T ss_dssp ------------------------CCTTHHHH------------HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHH------------HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566778888999999999999999999996 588999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701 107 LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM 186 (342)
Q Consensus 107 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 186 (342)
.+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|+++.++..+
T Consensus 86 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 165 (243)
T 2q7f_A 86 LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQF 165 (243)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701 187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY 266 (342)
Q Consensus 187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (342)
|.++...|++++|+..++++++..|.+ ..++..+|.++...|++
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~la~~~~~~~~~ 209 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQDPGH------------------------------------ADAFYNAGVTYAYKENR 209 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHTTCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccc------------------------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999999999999887 58999999999999999
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC
Q psy3701 267 EEALEFHKQALVVAPMKASTFCCIGYIQALTG 298 (342)
Q Consensus 267 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 298 (342)
++|+..++++++.+|++..++..++.+....|
T Consensus 210 ~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 210 EKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999999999999999999998887765544
No 33
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.97 E-value=2.6e-28 Score=213.02 Aligned_cols=214 Identities=16% Similarity=0.095 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCh-HHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHH
Q psy3701 60 LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS-DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNA 138 (342)
Q Consensus 60 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 138 (342)
.++++..+.+.....|.++.+++.+|.++...|++ ++|+.+|+++++.+|+++.+|..+|.++...|++++|+..|+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555666667788999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hccCCCCchHHHHHHHHHhhh---------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--------cChhHHHH
Q psy3701 139 FNLFKGCHLPALYVGLECGLT---------NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN--------HNYTVAEN 201 (342)
Q Consensus 139 l~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~ 201 (342)
++++|+ ..++..+|.++... |++++|+..|+++++.+|+++.+|..+|.++... |++++|+.
T Consensus 164 l~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 164 LTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 999999 68999999999999 9999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhhh---hcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701 202 CFMEALSKVK---QLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 278 (342)
Q Consensus 202 ~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 278 (342)
.|+++++++| .+ +.++.++|.++...|++++|+..|+++++
T Consensus 243 ~~~~al~~~p~~~~~------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 243 AYAQAEKVDRKASSN------------------------------------PDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHCGGGGGC------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccC------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999 66 68999999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701 279 VAPMKASTFCCIGYIQALTGDLDSAVNYFHKT 310 (342)
Q Consensus 279 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 310 (342)
.+|++..++..++.++...|++++|+..+.+.
T Consensus 287 l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 287 LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999877554
No 34
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.97 E-value=1.2e-28 Score=200.33 Aligned_cols=249 Identities=15% Similarity=0.067 Sum_probs=214.9
Q ss_pred HhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHH
Q psy3701 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDL----YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLP 113 (342)
Q Consensus 38 ~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 113 (342)
++......|++++|+..|+++ +.. +|.++.+++.+|.++...|++++|+.+|++++..+|.++.
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 78 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQI------------LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE 78 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHH------------HTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH
T ss_pred eeeccCccchHHHHHHHHHHH------------HhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH
Confidence 455556678999999999996 354 3567899999999999999999999999999999999999
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q psy3701 114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN 193 (342)
Q Consensus 114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (342)
++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|+++......+.. ...
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 157 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQK 157 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998776666544 677
Q ss_pred cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q psy3701 194 HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFH 273 (342)
Q Consensus 194 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 273 (342)
|++++|+..+++++...|.+. .. ..++..+...++.++|+..+
T Consensus 158 ~~~~~A~~~~~~~~~~~~~~~------------------------------------~~-~~~~~~~~~~~~~~~a~~~~ 200 (275)
T 1xnf_A 158 LDEKQAKEVLKQHFEKSDKEQ------------------------------------WG-WNIVEFYLGNISEQTLMERL 200 (275)
T ss_dssp HCHHHHHHHHHHHHHHSCCCS------------------------------------TH-HHHHHHHTTSSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCcch------------------------------------HH-HHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999888773 33 44777788888999999999
Q ss_pred HHHHhhCCCc----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcCC
Q psy3701 274 KQALVVAPMK----ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESP 336 (342)
Q Consensus 274 ~~al~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 336 (342)
++++...|.. +.++..+|.++...|++++|+.+|+++++.+|++...+...-.-+.++.+...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 201 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQD 267 (275)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC--
T ss_pred HHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHH
Confidence 9998877643 68899999999999999999999999999999887655444444455544443
No 35
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.96 E-value=5.9e-28 Score=184.25 Aligned_cols=171 Identities=15% Similarity=0.154 Sum_probs=100.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701 112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY 191 (342)
Q Consensus 112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (342)
+.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555666666666
Q ss_pred HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701 192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE 271 (342)
Q Consensus 192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 271 (342)
..++++.|+..+.+++...|.+ ..++..+|.++...|++++|+.
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~------------------------------------~~~~~~lg~~~~~~g~~~~A~~ 128 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVY------------------------------------ADAYYKLGLVYDSMGEHDKAIE 128 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccc------------------------------------hHHHHHHHHHHHHhCCchhHHH
Confidence 6666666666666666665555 3555666666666666666666
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 272 FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 272 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
.|+++++.+|+++.++..+|.++..+|++++|+.+|+++++++|+++
T Consensus 129 ~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 129 AYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 66666666666666666666666666666666666666666666543
No 36
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.96 E-value=5.6e-28 Score=184.36 Aligned_cols=174 Identities=14% Similarity=0.096 Sum_probs=168.4
Q ss_pred CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701 76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE 155 (342)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 155 (342)
+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|....++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701 156 CGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED 235 (342)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (342)
+...++++.|...+.+++...|.++.++..+|.++...|++++|+..|+++++.+|.+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---------------------- 140 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF---------------------- 140 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh----------------------
Confidence 9999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchH
Q psy3701 236 KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 285 (342)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 285 (342)
+.++.++|.++..+|++++|+..|+++++.+|+++.
T Consensus 141 --------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 141 --------------IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred --------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 589999999999999999999999999999997653
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-27 Score=192.29 Aligned_cols=214 Identities=12% Similarity=-0.025 Sum_probs=202.0
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC-------ch
Q psy3701 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC-------HL 147 (342)
Q Consensus 75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~ 147 (342)
+..+..+..+|.+++..|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++..|.. ..
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3467899999999999999999999999999999 889999999999999999999999999999998876 68
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHH
Q psy3701 148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN 227 (342)
Q Consensus 148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 227 (342)
++..+|.++...|++++|+..+++++...|. +.++...|++++|+..+++++..+|..
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------- 138 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEK-------------- 138 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHH--------------
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcch--------------
Confidence 8899999999999999999999999999986 567888899999999999999999988
Q ss_pred HhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHH
Q psy3701 228 NLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYF 307 (342)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 307 (342)
..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|
T Consensus 139 ----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 139 ----------------------AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701 308 HKTMALKRDDSFATTMLSYVIEQLIE 333 (342)
Q Consensus 308 ~~al~~~p~~~~~~~~l~~~~~~~~~ 333 (342)
+++++.+|+++.++..++.++...++
T Consensus 197 ~~al~~~~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 197 NKAIEKDPNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999876543
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=3.9e-27 Score=206.22 Aligned_cols=291 Identities=10% Similarity=-0.030 Sum_probs=209.6
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHhcCCCcHH
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGAL--------------------------------LADLFKLAHELVDLYPDSAI 79 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~--------------------------------~~~a~~~~~~~~~~~p~~~~ 79 (342)
...+..+|.+|...|++++|+..|++++ +++|+..+++++..+|+++.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 3456679999999999999999888764 36899999999999999999
Q ss_pred HHHHHHHHHHH---hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh----hccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701 80 AWYAVGCYYYL---IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAV----ENEHDQAMAAYFNAFNLFKGCHLPALYV 152 (342)
Q Consensus 80 ~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l 152 (342)
++..+|.++.. .++.++|+..++++++++|+++.++..+|..+.. .|++++|+..+++++..+|....++..+
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~l 253 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 99999988665 4677899999999999999999999888876654 4678899999999999999999999999
Q ss_pred HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-------------------cChhHHHHHHHHHHHhhhhc
Q psy3701 153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN-------------------HNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~al~~~~~~ 213 (342)
|.++...|++++|+..++++++..|+++.++..+|.+|... +.+++|+..++++++.+|..
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 333 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL 333 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch
Confidence 99999999999999999999999999999999999988643 34678999999999999887
Q ss_pred CccccccchhhHHHHhhhhHHHHHHHhchh-ccCCCC---hHHHHHHHHHH-HHhhhHHHHHHHHHHHHhh---------
Q psy3701 214 GGEIIADKWEPLLNNLGHKAEDKVKQLGGE-IIADKW---EPLLNNLGHVN-RKLKKYEEALEFHKQALVV--------- 279 (342)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~--------- 279 (342)
..... .....+...++ .+++...+.+. ...+.. ..++..+|.+. ...|++++|+..|++++++
T Consensus 334 ~~~~~--~lg~~~~~~~~-~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~ 410 (472)
T 4g1t_A 334 FRVCS--ILASLHALADQ-YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK 410 (472)
T ss_dssp CCCHH--HHHHHHHHTTC-HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred hhhhh--hHHHHHHHhcc-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 41111 11122222332 23444444432 222221 23456677554 5789999999999988865
Q ss_pred ---------------CCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701 280 ---------------APMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS 325 (342)
Q Consensus 280 ---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 325 (342)
+|+++.++..+|.++...|++++|+++|++++++.|.+|.+...+|
T Consensus 411 ~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 411 MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 4566788999999999999999999999999999999999888776
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.96 E-value=5.7e-27 Score=191.38 Aligned_cols=238 Identities=8% Similarity=-0.064 Sum_probs=207.9
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHh
Q psy3701 40 RVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS-AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMY 118 (342)
Q Consensus 40 ~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 118 (342)
+..+..|+|.+|+...++. ...+|++ .+....++.+|...|++++|+..++. .+|....++..+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~------------~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~l 71 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRV------------KPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMF 71 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHS------------CCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc------------ccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHH
Confidence 4456779999999988874 3666776 46778899999999999999998866 256667888899
Q ss_pred hhHHHhhccHHHHHHHHHHHhcc--CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcCh
Q psy3701 119 GHSFAVENEHDQAMAAYFNAFNL--FKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY 196 (342)
Q Consensus 119 a~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (342)
+..+...|+.++|++.+++++.. +|+++.+++.+|.++...|++++|++.+++ |+++.++..+|.++..+|++
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999875 699999999999999999999999999998 89999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH--HHHHHhhhHHHHHHHHH
Q psy3701 197 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG--HVNRKLKKYEEALEFHK 274 (342)
Q Consensus 197 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~ 274 (342)
++|+..++++++.+|++ .......+ .++...|++++|+..|+
T Consensus 147 ~~A~~~l~~~~~~~p~~------------------------------------~~~~l~~a~~~l~~~~~~~~eA~~~~~ 190 (291)
T 3mkr_A 147 DLARKELKKMQDQDEDA------------------------------------TLTQLATAWVSLAAGGEKLQDAYYIFQ 190 (291)
T ss_dssp HHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCc------------------------------------HHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 99999999999998876 22222222 33345699999999999
Q ss_pred HHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701 275 QALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE 333 (342)
Q Consensus 275 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 333 (342)
++++..|+++.++.++|.++..+|++++|+..|+++++.+|+++.++.+++.++...++
T Consensus 191 ~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 191 EMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999988776543
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.96 E-value=1.4e-26 Score=187.97 Aligned_cols=229 Identities=18% Similarity=0.177 Sum_probs=211.0
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----hCChHHHHHHHHHHhh
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYL----IGRSDPARRFLGKATS 106 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~ 106 (342)
+...++.+|..+...|++++|+..|+++. + |+++.+++.+|.++.. .+++++|+.+|+++++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~------------~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 70 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC------------D--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 70 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH------------H--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH
Confidence 45677889999999999999999999973 3 7889999999999999 9999999999999999
Q ss_pred cCCCcHHHHHHhhhHHHh----hccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh----hCCHHHHHHHHHHHHhhCCC
Q psy3701 107 LDKLFLPAWLMYGHSFAV----ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL----TNNARLASKFFDLALSIAHE 178 (342)
Q Consensus 107 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~ 178 (342)
.+ ++.++..+|.++.. .+++++|+..|+++++.. ++.++..+|.++.. .+++++|+.+|+++++..
T Consensus 71 ~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-- 144 (273)
T 1ouv_A 71 LN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-- 144 (273)
T ss_dssp TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--
T ss_pred CC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--
Confidence 86 78999999999999 999999999999999874 78899999999999 999999999999999875
Q ss_pred ChHHHHHHHHHHHH----hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHH
Q psy3701 179 DPFVIHEMGVIAYQ----NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN 254 (342)
Q Consensus 179 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (342)
++.++..+|.++.. .+++++|+.+|+++++.. + +.++.
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~------------------------------------~~a~~ 186 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--D------------------------------------SPGCF 186 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C------------------------------------HHHHH
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C------------------------------------HHHHH
Confidence 68899999999999 999999999999999874 2 46889
Q ss_pred HHHHHHHH----hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH----hCChHHHHHHHHHHHhcccCchh
Q psy3701 255 NLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL----TGDLDSAVNYFHKTMALKRDDSF 319 (342)
Q Consensus 255 ~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 319 (342)
.+|.++.. .+++++|+.+|+++++..| +.++..+|.++.. .+++++|+.+|+++++..|++..
T Consensus 187 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 187 NAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999 9999999999999999866 7889999999999 99999999999999999886654
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.96 E-value=1.2e-26 Score=186.11 Aligned_cols=212 Identities=17% Similarity=0.094 Sum_probs=200.8
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q psy3701 30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK 109 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 109 (342)
....+++.+|..+...|++++|+..|+++ +..+|.++.++..+|.++...|++++|+..++++++.+|
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------------l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 35 EARDAYIQLGLGYLQRGNTEQAKVPLRKA------------LEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp HHHHHHHHHHHHHHHTTCTGGGHHHHHHH------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHH------------HhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 34778889999999999999999999996 477999999999999999999999999999999999999
Q ss_pred CcHHHHHHhhhHHHhhccHHHHHHHHHHHhc--cCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701 110 LFLPAWLMYGHSFAVENEHDQAMAAYFNAFN--LFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG 187 (342)
Q Consensus 110 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 187 (342)
.+..++..+|.++...|++++|+..+++++. ..|.+..++..+|.++...|++++|+..+++++...|.++.++..+|
T Consensus 103 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 182 (252)
T 2ho1_A 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA 182 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 9999999999999999999999999999999 78888889999999999999999999999999999999999999999
Q ss_pred HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 267 (342)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (342)
.++...|++++|+..++++++..|.+ ...+..++.++...|+++
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGGGQN------------------------------------ARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCCC------------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCc------------------------------------HHHHHHHHHHHHHccCHH
Confidence 99999999999999999999998877 578999999999999999
Q ss_pred HHHHHHHHHHhhCCCchHHHHH
Q psy3701 268 EALEFHKQALVVAPMKASTFCC 289 (342)
Q Consensus 268 ~A~~~~~~al~~~~~~~~~~~~ 289 (342)
+|..+++++++..|+++.....
T Consensus 227 ~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 227 TAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999876543
No 42
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.96 E-value=7.7e-27 Score=184.34 Aligned_cols=213 Identities=11% Similarity=-0.020 Sum_probs=191.7
Q ss_pred CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC-CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK-LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV 152 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 152 (342)
.+.++..++.+|.+++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|.+..++..+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 456779999999999999999999999999999999 8899999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCHHHHHHHHHHHHhhCCCCh-------HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhh--cCccccccchh
Q psy3701 153 GLECGLTNNARLASKFFDLALSIAHEDP-------FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ--LGGEIIADKWE 223 (342)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~ 223 (342)
|.++...|++++|+..++++++.+|+++ .++..+|.++...|++++|+..|+++++.+|+ +
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---------- 152 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK---------- 152 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH----------
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc----------
Confidence 9999999999999999999999999999 66999999999999999999999999999999 7
Q ss_pred hHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHH
Q psy3701 224 PLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSA 303 (342)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 303 (342)
+.++.++|.++...|+ ..++++..+.+.....+ .+......+.+++|
T Consensus 153 --------------------------~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A 199 (228)
T 4i17_A 153 --------------------------TDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKA 199 (228)
T ss_dssp --------------------------HHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHH
Confidence 5899999999987765 34566677766665443 44556677889999
Q ss_pred HHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701 304 VNYFHKTMALKRDDSFATTMLSYVIE 329 (342)
Q Consensus 304 ~~~~~~al~~~p~~~~~~~~l~~~~~ 329 (342)
+.+|+++++++|+++.+...++.+..
T Consensus 200 ~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 200 VDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999998887753
No 43
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.96 E-value=3e-26 Score=189.23 Aligned_cols=224 Identities=14% Similarity=0.106 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------hCCh-------HHHHHHHHHHhh-cCCCcHH
Q psy3701 49 ALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYL-------IGRS-------DPARRFLGKATS-LDKLFLP 113 (342)
Q Consensus 49 ~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~a~~-~~~~~~~ 113 (342)
++|+..|++ ++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..
T Consensus 33 ~~a~~~~~~------------al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~ 100 (308)
T 2ond_A 33 KRVMFAYEQ------------CLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 100 (308)
T ss_dssp HHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHH------------HHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHH
Confidence 456666666 568899999999999999874 5886 999999999999 7999999
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch-HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy3701 114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL-PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ 192 (342)
Q Consensus 114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (342)
+|..+|.++...|++++|+..|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.+..++...+.+...
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887 899999999999999999999999999999999888877766544
Q ss_pred -hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701 193 -NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE 271 (342)
Q Consensus 193 -~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 271 (342)
.|++++|+..|+++++..|++ +.+|..+|..+...|++++|+.
T Consensus 181 ~~~~~~~A~~~~~~al~~~p~~------------------------------------~~~~~~~~~~~~~~g~~~~A~~ 224 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKYGDI------------------------------------PEYVLAYIDYLSHLNEDNNTRV 224 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHTTC------------------------------------HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCc------------------------------------HHHHHHHHHHHHHCCCHHHHHH
Confidence 799999999999999999988 5899999999999999999999
Q ss_pred HHHHHHhh---CCC-chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhH
Q psy3701 272 FHKQALVV---APM-KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320 (342)
Q Consensus 272 ~~~~al~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 320 (342)
.|++++.. .|+ ...+|..++..+...|+.++|...++++++..|++...
T Consensus 225 ~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 225 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 99999996 453 67899999999999999999999999999999986643
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=2.8e-27 Score=191.89 Aligned_cols=219 Identities=12% Similarity=0.043 Sum_probs=196.4
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch----HHHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL----PALYV 152 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~l 152 (342)
+++.++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++ .|.++. ++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999 454443 37899
Q ss_pred HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhh
Q psy3701 153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHK 232 (342)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (342)
|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|.+
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------------- 141 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD------------------- 141 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC-------------------
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc-------------------
Confidence 9999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCC---hHHHHHHHHH
Q psy3701 233 AEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGD---LDSAVNYFHK 309 (342)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 309 (342)
..++..+|......+++++|+..|+++++.+|++..++..+|.++...|+ +++|+..|++
T Consensus 142 -----------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 142 -----------------PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 58999999444455699999999999999999999999999999999999 9999999999
Q ss_pred HHhcc---cCc-----hhHHhHHHHHHHHhh
Q psy3701 310 TMALK---RDD-----SFATTMLSYVIEQLI 332 (342)
Q Consensus 310 al~~~---p~~-----~~~~~~l~~~~~~~~ 332 (342)
++++. |+. ..++..++.++...+
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 99986 542 256777777776543
No 45
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.95 E-value=2.3e-26 Score=200.69 Aligned_cols=205 Identities=14% Similarity=0.020 Sum_probs=196.0
Q ss_pred hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccH-HHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHH
Q psy3701 91 IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH-DQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFF 169 (342)
Q Consensus 91 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 169 (342)
.+++++++..+++.....|.++.+++.+|.++...|++ ++|+..|+++++.+|.+..++..+|.++...|++++|+..|
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34577888899999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHh---------cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHh
Q psy3701 170 DLALSIAHEDPFVIHEMGVIAYQN---------HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240 (342)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (342)
+++++.+|+ ..++..+|.++... |++++|+..|+++++++|.+
T Consensus 161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------- 212 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD--------------------------- 212 (474)
T ss_dssp HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------------------
T ss_pred HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC---------------------------
Confidence 999999998 79999999999999 99999999999999999998
Q ss_pred chhccCCCChHHHHHHHHHHHHh--------hhHHHHHHHHHHHHhhCC---CchHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701 241 GGEIIADKWEPLLNNLGHVNRKL--------KKYEEALEFHKQALVVAP---MKASTFCCIGYIQALTGDLDSAVNYFHK 309 (342)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 309 (342)
..+|..+|.++... |++++|+..|+++++.+| +++.++.++|.++...|++++|+..|++
T Consensus 213 ---------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 213 ---------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 58999999999999 999999999999999999 9999999999999999999999999999
Q ss_pred HHhcccCchhHHhHHHHHHHHhh
Q psy3701 310 TMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 310 al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
+++++|+++.++..++.++..++
T Consensus 284 al~l~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 284 AAALDPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998887654
No 46
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.95 E-value=3.6e-27 Score=202.16 Aligned_cols=292 Identities=16% Similarity=0.161 Sum_probs=231.8
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS----AIAWYAVGCYYYLIGRSDPARRFLGKATSL 107 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 107 (342)
...++.+|..+...|++++|+..|+++ +...|.+ ..++..+|.++...|++++|+.++++++.+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~a------------l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 76 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAA------------VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 76 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH------------HhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 446678999999999999999999997 4667877 468899999999999999999999999877
Q ss_pred ------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC------chHHHHHHHHHhhhCC--------------
Q psy3701 108 ------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC------HLPALYVGLECGLTNN-------------- 161 (342)
Q Consensus 108 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~-------------- 161 (342)
.|....++..+|.++...|++++|+..++++++..|.. ..++..+|.++...|+
T Consensus 77 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 156 (406)
T 3sf4_A 77 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence 34457789999999999999999999999999987654 3478889999999999
Q ss_pred ------HHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccc----ccchhhH
Q psy3701 162 ------ARLASKFFDLALSIA------HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEII----ADKWEPL 225 (342)
Q Consensus 162 ------~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~ 225 (342)
+++|+..+++++.+. |....++..+|.++...|++++|+..++++++..+..+.... ......+
T Consensus 157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999999998762 334567899999999999999999999999999887642110 0011112
Q ss_pred HHHhhhhHHHHHHHhch-------hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc------hHHHHHHHH
Q psy3701 226 LNNLGHKAEDKVKQLGG-------EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------ASTFCCIGY 292 (342)
Q Consensus 226 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~ 292 (342)
+...++. .++...+.. ....+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.
T Consensus 237 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 237 YIFLGEF-ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCh-HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 2222222 222222222 22222336788899999999999999999999999875443 568889999
Q ss_pred HHHHhCChHHHHHHHHHHHhcccCch------hHHhHHHHHHHHhhhcCC
Q psy3701 293 IQALTGDLDSAVNYFHKTMALKRDDS------FATTMLSYVIEQLIEESP 336 (342)
Q Consensus 293 ~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~ 336 (342)
++...|++++|+.++++++++.+... .++..++.++...++...
T Consensus 316 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 316 AYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99999999999999999999999883 567788888888876643
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=3.9e-27 Score=202.56 Aligned_cols=278 Identities=15% Similarity=0.170 Sum_probs=209.7
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701 29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSA----IAWYAVGCYYYLIGRSDPARRFLGKA 104 (342)
Q Consensus 29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a 104 (342)
......++.+|..+...|++++|+..|+++ +...|+++ .++..+|.++...|++++|+.+++++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~a------------l~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAA------------IQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD 112 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHH------------HHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345666778999999999999999999996 46788876 58999999999999999999999999
Q ss_pred hhc------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc------CCCCchHHHHHHHHHhhhCC-----------
Q psy3701 105 TSL------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL------FKGCHLPALYVGLECGLTNN----------- 161 (342)
Q Consensus 105 ~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~~~----------- 161 (342)
++. .|....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|+
T Consensus 113 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 192 (411)
T 4a1s_A 113 LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG 192 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhh
Confidence 987 5667889999999999999999999999999998 44556688889999999999
Q ss_pred ------HHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccc----cccchhhH
Q psy3701 162 ------ARLASKFFDLALSIA------HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI----IADKWEPL 225 (342)
Q Consensus 162 ------~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~ 225 (342)
+++|+..+++++.+. +....++..+|.++...|++++|+.++++++++.+...... .......+
T Consensus 193 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (411)
T 4a1s_A 193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS 272 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999999998764 23345889999999999999999999999999988763100 00001111
Q ss_pred HHHhhhhHHHHHHHhch-------hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc------hHHHHHHHH
Q psy3701 226 LNNLGHKAEDKVKQLGG-------EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------ASTFCCIGY 292 (342)
Q Consensus 226 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~ 292 (342)
+...++. .++...+.. .........++..+|.++...|++++|+.++++++...+.. ..++..+|.
T Consensus 273 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 351 (411)
T 4a1s_A 273 HIFLGQF-EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGN 351 (411)
T ss_dssp HHTTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHCcCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 1122211 122222221 11112234567777777777778888887777777764332 346777777
Q ss_pred HHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701 293 IQALTGDLDSAVNYFHKTMALKRDDSF 319 (342)
Q Consensus 293 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 319 (342)
++...|++++|+.+|++++++.+....
T Consensus 352 ~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 352 AHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 777778888888888877777664443
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.95 E-value=1.7e-25 Score=175.97 Aligned_cols=213 Identities=16% Similarity=0.136 Sum_probs=198.8
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q psy3701 30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK 109 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 109 (342)
....+++.+|..+...|++++|+..|+++ +..+|+++.++..+|.++...|++++|+.++++++..+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 73 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDA------------LKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHH------------HHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 34567788999999999999999999996 588999999999999999999999999999999999999
Q ss_pred CcHHHHHHhhhHHHhh-ccHHHHHHHHHHHhc--cCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701 110 LFLPAWLMYGHSFAVE-NEHDQAMAAYFNAFN--LFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM 186 (342)
Q Consensus 110 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 186 (342)
.+..++..+|.++... |++++|+..++++++ ..|....++..+|.++...|++++|+..++++++..|+++.++..+
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 153 (225)
T 2vq2_A 74 DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKEL 153 (225)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 9999999999999999 999999999999999 5666678899999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhh-hcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701 187 GVIAYQNHNYTVAENCFMEALSKVK-QLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK 265 (342)
Q Consensus 187 ~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (342)
|.++...|++++|+..++++++..| .+ ...+..++.++...|+
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~ 197 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEVLQ------------------------------------ADDLLLGWKIAKALGN 197 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSCC------------------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCC------------------------------------HHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999 66 4778888999999999
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHH
Q psy3701 266 YEEALEFHKQALVVAPMKASTFCCI 290 (342)
Q Consensus 266 ~~~A~~~~~~al~~~~~~~~~~~~l 290 (342)
+++|..+++.+.+..|+++.+...+
T Consensus 198 ~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 198 AQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999999999999998776544
No 49
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.95 E-value=6.9e-27 Score=195.06 Aligned_cols=243 Identities=18% Similarity=0.218 Sum_probs=187.2
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS----AIAWYAVGCYYYLIGRSDPARRFLGKATS 106 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 106 (342)
....++..|..+...|++++|+..|+++ +...|++ ..++..+|.++...|++++|+.++++++.
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~a------------l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 71 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAA------------VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHH------------HhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456678999999999999999999997 4668887 47888999999999999999999999988
Q ss_pred c------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch------HHHHHHHHHhhhCC-------------
Q psy3701 107 L------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL------PALYVGLECGLTNN------------- 161 (342)
Q Consensus 107 ~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~l~~~~~~~~~------------- 161 (342)
. .|....++..+|.++...|++++|+..++++++..|.... ++..+|.++...|+
T Consensus 72 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3ro2_A 72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEF 151 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----C
T ss_pred HhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhh
Confidence 7 4455778999999999999999999999999998765433 77889999999999
Q ss_pred -------HHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH
Q psy3701 162 -------ARLASKFFDLALSIA------HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN 228 (342)
Q Consensus 162 -------~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 228 (342)
+++|+..+++++... +....++..+|.++...|++++|+..++++++..+..+.
T Consensus 152 ~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------- 218 (338)
T 3ro2_A 152 PEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD------------- 218 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-------------
Confidence 999999999988762 333567899999999999999999999999998877631
Q ss_pred hhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHHhCChHH
Q psy3701 229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------ASTFCCIGYIQALTGDLDS 302 (342)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~ 302 (342)
.+....++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++
T Consensus 219 -----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (338)
T 3ro2_A 219 -----------------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 281 (338)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHH
Confidence 00012355556666666666666666666665554332 3455556666666666666
Q ss_pred HHHHHHHHHhccc
Q psy3701 303 AVNYFHKTMALKR 315 (342)
Q Consensus 303 A~~~~~~al~~~p 315 (342)
|+.++++++++.|
T Consensus 282 A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 282 AIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.95 E-value=7.9e-27 Score=200.07 Aligned_cols=274 Identities=18% Similarity=0.080 Sum_probs=206.5
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
...++..+|.++...|++++|+..|++++ .+... ....|..+.++..+|.++...|++++|+.++++++.+.|.
T Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 119 (406)
T 3sf4_A 46 LSAIYSQLGNAYFYLHDYAKALEYHHHDL-----TLART-IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 119 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----HHHHh-ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 35678889999999999999999999974 22221 1224556889999999999999999999999999998765
Q ss_pred c------HHHHHHhhhHHHhhcc--------------------HHHHHHHHHHHhccC------CCCchHHHHHHHHHhh
Q psy3701 111 F------LPAWLMYGHSFAVENE--------------------HDQAMAAYFNAFNLF------KGCHLPALYVGLECGL 158 (342)
Q Consensus 111 ~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~ 158 (342)
. ..++..+|.++...|+ +++|+..+++++.+. |....++..+|.++..
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 199 (406)
T 3sf4_A 120 LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL 199 (406)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 4 4589999999999999 999999999998873 3334577889999999
Q ss_pred hCCHHHHHHHHHHHHhhCCCChH------HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhh
Q psy3701 159 TNNARLASKFFDLALSIAHEDPF------VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHK 232 (342)
Q Consensus 159 ~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (342)
.|++++|+..+++++...|.... ++..+|.++...|++++|+..+++++...+...... .....+..++..
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~ 276 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA---VEAQSCYSLGNT 276 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch---HHHHHHHHHHHH
Confidence 99999999999999988765443 889999999999999999999999999988763111 111222222221
Q ss_pred ------HHHHHHHhch-------hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC------CchHHHHHHHHH
Q psy3701 233 ------AEDKVKQLGG-------EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP------MKASTFCCIGYI 293 (342)
Q Consensus 233 ------~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~l~~~ 293 (342)
..++...+.. ....+....++..+|.++...|++++|+.++++++++.+ ....++..+|.+
T Consensus 277 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 356 (406)
T 3sf4_A 277 YTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDL 356 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 1222222222 222333467899999999999999999999999998743 335788999999
Q ss_pred HHHhCChHHHHHHHHHHHhc
Q psy3701 294 QALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 294 ~~~~g~~~~A~~~~~~al~~ 313 (342)
+...|+...+...+.+....
T Consensus 357 ~~~~g~~~~~~~~~~~~~~~ 376 (406)
T 3sf4_A 357 QMVLGLSYSTNNSIMSENTE 376 (406)
T ss_dssp HHHHHTTSCC----------
T ss_pred HHHhhHhHHHHHHHHHHHHH
Confidence 99999887665555544433
No 51
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.95 E-value=9e-27 Score=210.80 Aligned_cols=172 Identities=15% Similarity=0.083 Sum_probs=104.6
Q ss_pred CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG 153 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 153 (342)
.|++++++.++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++..++..+|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666655555566
Q ss_pred HHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhH
Q psy3701 154 LECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA 233 (342)
Q Consensus 154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (342)
.++..+|++++|++.|+++++++|++..++.++|.++..+|++++|+..|+++++++|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-------------------- 144 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-------------------- 144 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------
Confidence 555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Q psy3701 234 EDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281 (342)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 281 (342)
..++.++|.++...|++++|++.+++++++.|
T Consensus 145 ----------------~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 145 ----------------PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp ----------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred ----------------hHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 35555555555555555555555555555443
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.95 E-value=6.4e-26 Score=184.07 Aligned_cols=231 Identities=16% Similarity=0.149 Sum_probs=201.9
Q ss_pred hHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701 28 SEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL 107 (342)
Q Consensus 28 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 107 (342)
+.....+++.+|.++...|++++|+..|+++ +..+|.++.++..+|.++...|++++|+.+|+++++.
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 106 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQA------------LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHH------------HHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3456788889999999999999999999996 5889999999999999999999999999999999999
Q ss_pred CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701 108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG 187 (342)
Q Consensus 108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 187 (342)
+|.++.++..+|.++...|++++|+..++++++..|++.......+.. ...|++++|+..+++++...|.+...+. ++
T Consensus 107 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~ 184 (275)
T 1xnf_A 107 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IV 184 (275)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HH
T ss_pred CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HH
Confidence 999999999999999999999999999999999999988666655544 6679999999999999999998877654 77
Q ss_pred HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 267 (342)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (342)
.++...++.++|+..+++++...|... +....++..+|.++...|+++
T Consensus 185 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~la~~~~~~g~~~ 232 (275)
T 1xnf_A 185 EFYLGNISEQTLMERLKADATDNTSLA--------------------------------EHLSETNFYLGKYYLSLGDLD 232 (275)
T ss_dssp HHHTTSSCHHHHHHHHHHHCCSHHHHH--------------------------------HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHhccccccc--------------------------------ccccHHHHHHHHHHHHcCCHH
Confidence 778888899999999999998877541 111478999999999999999
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHH
Q psy3701 268 EALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYF 307 (342)
Q Consensus 268 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 307 (342)
+|+..|+++++.+|++... .+.++...|++++|++.+
T Consensus 233 ~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 233 SATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 9999999999999977544 477888999999999887
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.95 E-value=1.5e-26 Score=209.36 Aligned_cols=175 Identities=13% Similarity=0.127 Sum_probs=169.1
Q ss_pred cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701 107 LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM 186 (342)
Q Consensus 107 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 186 (342)
..|++++++.++|.++..+|++++|+..|+++++++|++..++..+|.++..+|++++|+..|+++++++|+++.++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701 187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY 266 (342)
Q Consensus 187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (342)
|.++..+|++++|+..|+++++++|++ ..++.++|.++..+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~------------------------------------~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAF------------------------------------ADAHSNLASIHKDSGNI 127 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999998 68999999999999999
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc
Q psy3701 267 EEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD 317 (342)
Q Consensus 267 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 317 (342)
++|+..|+++++++|+++.++.++|.++..+|++++|.+.+++++++.|+.
T Consensus 128 ~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 999999999999999999999999999999999999999999999887654
No 54
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.94 E-value=7.3e-25 Score=172.97 Aligned_cols=209 Identities=14% Similarity=0.163 Sum_probs=184.9
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYP-DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
...++.+|.++...|++++|+..|+++ +..+| .+..+++.+|.++...|++++|+.+|+++++.+|+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~a------------l~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 74 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEY------------LKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN 74 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH------------HhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc
Confidence 467889999999999999999999996 57787 88899999999999999999999999999999999
Q ss_pred cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc-------hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC--ChH
Q psy3701 111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH-------LPALYVGLECGLTNNARLASKFFDLALSIAHE--DPF 181 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~ 181 (342)
++.++..+|.++...|++++|+..++++++.+|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 154 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD 154 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH
Confidence 999999999999999999999999999999999988 66889999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH
Q psy3701 182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR 261 (342)
Q Consensus 182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (342)
++..+|.++...|+ ..++++..+.+.. ... ..+....
T Consensus 155 ~~~~l~~~~~~~~~-----~~~~~a~~~~~~~------------------------------------~~~--~~~~~~~ 191 (228)
T 4i17_A 155 ALYSLGVLFYNNGA-----DVLRKATPLASSN------------------------------------KEK--YASEKAK 191 (228)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHGGGTTTC------------------------------------HHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHhcccCC------------------------------------HHH--HHHHHHH
Confidence 99999999987664 4456665555444 122 2344456
Q ss_pred HhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Q psy3701 262 KLKKYEEALEFHKQALVVAPMKASTFCCIGYIQA 295 (342)
Q Consensus 262 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 295 (342)
..+.+++|+.+++++++++|+++.+...++.+..
T Consensus 192 ~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 192 ADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 6788999999999999999999999888887653
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=6e-26 Score=195.14 Aligned_cols=246 Identities=17% Similarity=0.089 Sum_probs=191.6
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc----
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL---- 107 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 107 (342)
..++..+|.++...|++++|+..|++++ .++... ...|....++..+|.++...|++++|+.++++++..
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al-----~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 159 (411)
T 4a1s_A 86 SAIYSQLGNAYFYLGDYNKAMQYHKHDL-----TLAKSM-NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL 159 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHc-cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 4678889999999999999999999974 222111 225667889999999999999999999999999988
Q ss_pred --CCCcHHHHHHhhhHHHhhcc-----------------HHHHHHHHHHHhccCC------CCchHHHHHHHHHhhhCCH
Q psy3701 108 --DKLFLPAWLMYGHSFAVENE-----------------HDQAMAAYFNAFNLFK------GCHLPALYVGLECGLTNNA 162 (342)
Q Consensus 108 --~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~~~~ 162 (342)
.|....++..+|.++...|+ +++|+..+++++++.+ ....++..+|.++...|++
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 239 (411)
T 4a1s_A 160 GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF 239 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 55667789999999999999 9999999999988643 2345788899999999999
Q ss_pred HHHHHHHHHHHhhCCCChH------HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccc----cccchhhHHHHhhhh
Q psy3701 163 RLASKFFDLALSIAHEDPF------VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI----IADKWEPLLNNLGHK 232 (342)
Q Consensus 163 ~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~~~~~~ 232 (342)
++|+.++++++...+.... ++..+|.++...|++++|+..+++++...+...... .......++...++.
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999998765433 789999999999999999999999999988653111 000111222222222
Q ss_pred HHHHHHHhc-------hhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch
Q psy3701 233 AEDKVKQLG-------GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 284 (342)
Q Consensus 233 ~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 284 (342)
.++...+. .....+....++..+|.++...|++++|+.++++++++.+...
T Consensus 320 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 320 -NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp -HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred -HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 22222222 2223344466899999999999999999999999999987544
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.94 E-value=5.6e-24 Score=172.61 Aligned_cols=209 Identities=15% Similarity=0.105 Sum_probs=192.0
Q ss_pred CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh----hccHHHHHHHHHHHhccCCCCchHH
Q psy3701 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAV----ENEHDQAMAAYFNAFNLFKGCHLPA 149 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 149 (342)
+|.++.+++.+|.++...|++++|+.+|+++++ |.++.++..+|.++.. .+++++|+..|+++++.. ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 578899999999999999999999999999998 7788999999999999 999999999999999985 78899
Q ss_pred HHHHHHHhh----hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----hcChhHHHHHHHHHHHhhhhcCccccccc
Q psy3701 150 LYVGLECGL----TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ----NHNYTVAENCFMEALSKVKQLGGEIIADK 221 (342)
Q Consensus 150 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 221 (342)
..+|.++.. .+++++|+..|+++++. +++.++..+|.++.. .+++++|+.+|+++++..+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---------- 145 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND---------- 145 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc----------
Confidence 999999999 99999999999999987 489999999999999 9999999999999998752
Q ss_pred hhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH-
Q psy3701 222 WEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL- 296 (342)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~- 296 (342)
..++..+|.++.. .+++++|+.+|+++++. +++.++..+|.++..
T Consensus 146 ----------------------------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 146 ----------------------------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHG 195 (273)
T ss_dssp ----------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred ----------------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC
Confidence 4688999999998 99999999999999987 467899999999999
Q ss_pred ---hCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 297 ---TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 297 ---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
.+++++|+.+|+++++..| +.++..++.++..
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 9999999999999999866 7888899988875
No 57
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.9e-26 Score=188.61 Aligned_cols=256 Identities=14% Similarity=0.101 Sum_probs=198.7
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701 29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVD-LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL 107 (342)
Q Consensus 29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 107 (342)
.....++..+|.++...|++++|+..|++++ .++.+... ..|....++..+|.++...|++++|+.++++++..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQAL-----EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456778889999999999999999999974 22222110 46777899999999999999999999999999987
Q ss_pred --------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC--------CCCchHHHHHHHHHhhhCCHHHHHHHHHH
Q psy3701 108 --------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--------KGCHLPALYVGLECGLTNNARLASKFFDL 171 (342)
Q Consensus 108 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 171 (342)
.|....++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+.++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46667889999999999999999999999999874 44566788899999999999999999999
Q ss_pred HHhh--------CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchh
Q psy3701 172 ALSI--------AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGE 243 (342)
Q Consensus 172 ~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
++.. .|....++..+|.++...|++++|+..++++++..+...- +
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~------------- 231 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF--------------G------------- 231 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH--------------C-------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--------------C-------------
Confidence 9988 6666778999999999999999999999999998765310 0
Q ss_pred ccCCCC------hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701 244 IIADKW------EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316 (342)
Q Consensus 244 ~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 316 (342)
...+.. ...+...+..+...+.+.+|...++++....|....++..+|.++...|++++|+.+|++++++.|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 000001 2334444555566677778888999999889999999999999999999999999999999999875
No 58
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.94 E-value=1.9e-25 Score=190.33 Aligned_cols=243 Identities=12% Similarity=0.117 Sum_probs=202.6
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q psy3701 33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDL---YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK 109 (342)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 109 (342)
..++.+|..+...|++++|+..|++++ ++... .+..+.++..+|.++...|++++|+.++++++++.+
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al---------~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 174 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAE---------SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK 174 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH---------TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH---------HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 345569999999999999999999974 01111 223568999999999999999999999999998744
Q ss_pred C-------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc------hHHHHHHHHHhhhCCHHHHHHHHHHHHh--
Q psy3701 110 L-------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH------LPALYVGLECGLTNNARLASKFFDLALS-- 174 (342)
Q Consensus 110 ~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 174 (342)
. ...++..+|.++...|++++|+..+++++++.+... .++..+|.++...|++++|+.++++++.
T Consensus 175 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 175 EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp TCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3 345789999999999999999999999998866543 4788899999999999999999999999
Q ss_pred ---hC-CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCCh
Q psy3701 175 ---IA-HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWE 250 (342)
Q Consensus 175 ---~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (342)
.+ |..+.++..+|.++...|++++|+.++++++++.+... .+...
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------~~~~~ 303 (383)
T 3ulq_A 255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG-------------------------------DVIYL 303 (383)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-------------------------------CHHHH
T ss_pred HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-------------------------------CHHHH
Confidence 45 77788999999999999999999999999999876542 11112
Q ss_pred HHHHHHHHHHHHhhh---HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701 251 PLLNNLGHVNRKLKK---YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 316 (342)
..+..+|.++...|+ +++|+..+++. ...|....++..+|.++...|++++|..+|++++++...
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 345679999999998 88888888876 333455678889999999999999999999999987543
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=1.3e-25 Score=187.30 Aligned_cols=250 Identities=20% Similarity=0.188 Sum_probs=207.9
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF 111 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 111 (342)
..++..+|.++...|++++|+..+++++ .+... ....|..+.++..+|.++...|++++|+..++++++..|..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 116 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDL-----TLART-IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 116 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHhhc-ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 5678889999999999999999999974 22222 13345567899999999999999999999999999876543
Q ss_pred ------HHHHHHhhhHHHhhcc--------------------HHHHHHHHHHHhccC------CCCchHHHHHHHHHhhh
Q psy3701 112 ------LPAWLMYGHSFAVENE--------------------HDQAMAAYFNAFNLF------KGCHLPALYVGLECGLT 159 (342)
Q Consensus 112 ------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~ 159 (342)
..++..+|.++...|+ +++|+..+++++... +....++..+|.++...
T Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (338)
T 3ro2_A 117 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL 196 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 3488999999999999 999999999998763 23345778899999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCh------HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhH
Q psy3701 160 NNARLASKFFDLALSIAHEDP------FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA 233 (342)
Q Consensus 160 ~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (342)
|++++|+..+++++...+... .++..+|.++...|++++|+..+++++...+...
T Consensus 197 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------- 257 (338)
T 3ro2_A 197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK------------------- 257 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-------------------
T ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc-------------------
Confidence 999999999999998765432 3789999999999999999999999999887763
Q ss_pred HHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHHhCChHHHHHHH
Q psy3701 234 EDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------ASTFCCIGYIQALTGDLDSAVNYF 307 (342)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 307 (342)
..+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|..++
T Consensus 258 -----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 258 -----------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -----------chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 111124688899999999999999999999999876543 457889999999999999999999
Q ss_pred HHHHhcccCc
Q psy3701 308 HKTMALKRDD 317 (342)
Q Consensus 308 ~~al~~~p~~ 317 (342)
++++++.+..
T Consensus 327 ~~a~~~~~~~ 336 (338)
T 3ro2_A 327 EKHLEISREV 336 (338)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 60
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.93 E-value=1.4e-24 Score=174.97 Aligned_cols=199 Identities=13% Similarity=0.091 Sum_probs=176.2
Q ss_pred hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC---
Q psy3701 72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC--- 145 (342)
Q Consensus 72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--- 145 (342)
...|.++..++.+|..++..|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|+++++..|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 5688999999999999999999999999999999999998 8999999999999999999999999999998865
Q ss_pred chHHHHHHHHHhh--------hCCHHHHHHHHHHHHhhCCCChHHH-----------------HHHHHHHHHhcChhHHH
Q psy3701 146 HLPALYVGLECGL--------TNNARLASKFFDLALSIAHEDPFVI-----------------HEMGVIAYQNHNYTVAE 200 (342)
Q Consensus 146 ~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~A~ 200 (342)
+.+++.+|.++.. .|++++|+..|++++...|+++.+. +.+|.++...|++++|+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4578899999999 9999999999999999999987666 88899999999999999
Q ss_pred HHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh----------hhHHHHH
Q psy3701 201 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL----------KKYEEAL 270 (342)
Q Consensus 201 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~ 270 (342)
..|+++++..|+++ ....++..+|.++..+ |++++|+
T Consensus 169 ~~~~~~l~~~p~~~---------------------------------~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~ 215 (261)
T 3qky_A 169 VTYEAVFDAYPDTP---------------------------------WADDALVGAMRAYIAYAEQSVRARQPERYRRAV 215 (261)
T ss_dssp HHHHHHHHHCTTST---------------------------------THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHCCCCc---------------------------------hHHHHHHHHHHHHHHhcccchhhcccchHHHHH
Confidence 99999999999863 1247899999999977 8999999
Q ss_pred HHHHHHHhhCCCch---HHHHHHHHHHHHhCChHHH
Q psy3701 271 EFHKQALVVAPMKA---STFCCIGYIQALTGDLDSA 303 (342)
Q Consensus 271 ~~~~~al~~~~~~~---~~~~~l~~~~~~~g~~~~A 303 (342)
..|+++++..|+++ .+...++.++..+++++++
T Consensus 216 ~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 216 ELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999885 4556667777666665543
No 61
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.93 E-value=4.2e-24 Score=173.28 Aligned_cols=232 Identities=7% Similarity=-0.048 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC--ChHHHHHHHHHHhhcCCCcHHHHHHhhhHH----
Q psy3701 49 ALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG--RSDPARRFLGKATSLDKLFLPAWLMYGHSF---- 122 (342)
Q Consensus 49 ~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~---- 122 (342)
++|+.++.+ ++..+|++..+|+..+.+....+ ++++++.++++++..+|++..+|...+.++
T Consensus 50 ~~aL~~t~~------------~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 50 ERALHITEL------------GINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHHHHH------------HHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------HHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 567777766 57999999999999999999999 999999999999999999999999999999
Q ss_pred Hhh---ccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHH--HHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC--
Q psy3701 123 AVE---NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNAR--LASKFFDLALSIAHEDPFVIHEMGVIAYQNHN-- 195 (342)
Q Consensus 123 ~~~---g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 195 (342)
... +++++++..+.++++.+|.+..+|...+.+....|.++ ++++.++++++.+|.+..+|...+.+....++
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC
T ss_pred HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence 666 78999999999999999999999999999999999999 99999999999999999999999999999988
Q ss_pred ----hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHH-HH
Q psy3701 196 ----YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEE-AL 270 (342)
Q Consensus 196 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~ 270 (342)
++++++++++++..+|.+ ..+|+.++.++...|+..+ ..
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~n------------------------------------~SaW~y~~~ll~~~~~~~~~~~ 241 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQN------------------------------------PSTWNYLLGIHERFDRSITQLE 241 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSC------------------------------------HHHHHHHHHHHHHTTCCGGGGH
T ss_pred hhhhHHHHHHHHHHHHHhCCCC------------------------------------ccHHHHHHHHHHhcCCChHHHH
Confidence 999999999999999999 5899999999999998555 55
Q ss_pred HHHHHHHhhC---CCchHHHHHHHHHHHHhCChHHHHHHHHHHHh-cccCchhHHhHHHHHH
Q psy3701 271 EFHKQALVVA---PMKASTFCCIGYIQALTGDLDSAVNYFHKTMA-LKRDDSFATTMLSYVI 328 (342)
Q Consensus 271 ~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~ 328 (342)
.++++++..+ |.++.++..++.++.+.|+.++|+++|+.+.+ .+|-....|...+..+
T Consensus 242 ~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 242 EFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhc
Confidence 6777777766 78899999999999999999999999999997 8999998888766543
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=4.9e-24 Score=175.96 Aligned_cols=238 Identities=11% Similarity=0.067 Sum_probs=201.9
Q ss_pred HHHHHHHHHhHHHHh-------hccH-------HHHHHHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHhCCh
Q psy3701 30 MKSALLLLKGRVYEA-------LENR-------ALAADCYKGALLADLFKLAHELVD-LYPDSAIAWYAVGCYYYLIGRS 94 (342)
Q Consensus 30 ~~~~~~~~~g~~~~~-------~~~~-------~~A~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~ 94 (342)
....+|+..|..+.. .|++ ++|+..|+++ +. .+|++..+|..+|.++...|++
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rA------------l~~~~p~~~~~~~~~~~~~~~~~~~ 115 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA------------ISTLLKKNMLLYFAYADYEESRMKY 115 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH------------HTTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHH------------HHHhCcccHHHHHHHHHHHHhcCCH
Confidence 345677778877763 4665 7777777775 57 6999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCcHH-HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh-hhCCHHHHHHHHHHH
Q psy3701 95 DPARRFLGKATSLDKLFLP-AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG-LTNNARLASKFFDLA 172 (342)
Q Consensus 95 ~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~ 172 (342)
++|+..|+++++.+|.++. +|..+|.++...|++++|+..|+++++..|.....+...+.... ..|++++|+..|+++
T Consensus 116 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~a 195 (308)
T 2ond_A 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELG 195 (308)
T ss_dssp HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999987 99999999999999999999999999999988777776665543 379999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHh---hhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCC
Q psy3701 173 LSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSK---VKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKW 249 (342)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (342)
++.+|+++.+|..+|.++...|++++|+..|++++.. .|+..
T Consensus 196 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~----------------------------------- 240 (308)
T 2ond_A 196 LKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS----------------------------------- 240 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC-----------------------------------
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH-----------------------------------
Confidence 9999999999999999999999999999999999996 44432
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 326 (342)
..+|..++..+...|++++|...++++++..|++..... ++.+ .. -.+.+.++|+++.+...||.
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~-~~~~---~~--------r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE-TALL---VD--------RYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH-HHHH---HT--------TTCBTTBCSSCHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch-HHHH---HH--------HHHhcccCCCCHHHHHhcCC
Confidence 578999999999999999999999999999998664332 1222 11 12678899999998887764
No 63
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.93 E-value=9.5e-25 Score=198.52 Aligned_cols=188 Identities=10% Similarity=-0.091 Sum_probs=175.8
Q ss_pred hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHh--------hcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCC
Q psy3701 72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKAT--------SLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK 143 (342)
Q Consensus 72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 143 (342)
..+|+++.+++..| ...|++++|+..+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 34677887877777 78999999999999999 89999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchh
Q psy3701 144 GCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE 223 (342)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 223 (342)
++..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++++|++
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~---------- 533 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV---------- 533 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC----------
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch----------
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999998
Q ss_pred hHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCC
Q psy3701 224 PLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGD 299 (342)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 299 (342)
..+++++|.++...|++++|+..|+++++.+|++..++.++|.++...++
T Consensus 534 --------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 534 --------------------------ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred --------------------------HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 58999999999999999999999999999999999999999999987665
No 64
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.93 E-value=7.9e-24 Score=170.56 Aligned_cols=210 Identities=12% Similarity=0.068 Sum_probs=174.6
Q ss_pred hhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC---chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC--
Q psy3701 105 TSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC---HLPALYVGLECGLTNNARLASKFFDLALSIAHED-- 179 (342)
Q Consensus 105 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-- 179 (342)
...+|.++..++.+|..+...|++++|+..|+++++..|.+ +.+++.+|.++...|++++|+..|+++++..|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 45678899999999999999999999999999999999998 7899999999999999999999999999998865
Q ss_pred -hHHHHHHHHHHHH--------hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCCh
Q psy3701 180 -PFVIHEMGVIAYQ--------NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWE 250 (342)
Q Consensus 180 -~~~~~~l~~~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (342)
+.+++.+|.++.. .|++++|+..|+++++..|+++.. + .+...+..... ...
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----~-~a~~~~~~~~~-------------~~~ 148 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV-----D-DATQKIRELRA-------------KLA 148 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH-----H-HHHHHHHHHHH-------------HHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH-----H-HHHHHHHHHHH-------------HHH
Confidence 5689999999999 999999999999999999988410 0 00000000000 012
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHh----------CChHHHHHHHHHHHhcccCc
Q psy3701 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPM---KASTFCCIGYIQALT----------GDLDSAVNYFHKTMALKRDD 317 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~ 317 (342)
..++.+|.++...|++++|+..|+++++..|+ .+.+++.+|.++..+ |++++|+..|+++++.+|++
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 44689999999999999999999999999998 567999999999977 99999999999999999999
Q ss_pred h---hHHhHHHHHHHHhhh
Q psy3701 318 S---FATTMLSYVIEQLIE 333 (342)
Q Consensus 318 ~---~~~~~l~~~~~~~~~ 333 (342)
+ .+...++.+.....+
T Consensus 229 ~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6 455566666655443
No 65
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.93 E-value=1.6e-24 Score=177.47 Aligned_cols=217 Identities=13% Similarity=0.019 Sum_probs=177.6
Q ss_pred HHHHHHhCChHHHHHHHHHHhhcCCC------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC------chHHHHH
Q psy3701 85 GCYYYLIGRSDPARRFLGKATSLDKL------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC------HLPALYV 152 (342)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l 152 (342)
|.++...|++++|+.+|++++.+.+. .+.++..+|.++...|++++|+.+|++++++.|.. ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56788899999999999999987532 25689999999999999999999999999998754 3467889
Q ss_pred HHHHhhh-CCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhH
Q psy3701 153 GLECGLT-NNARLASKFFDLALSIAHED------PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPL 225 (342)
Q Consensus 153 ~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 225 (342)
|.++... |++++|+.+|++++++.|.+ ..++..+|.++..+|++++|+..|+++++..|.++.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 193 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL---------- 193 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT----------
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc----------
Confidence 9999996 99999999999999998754 467889999999999999999999999999987730
Q ss_pred HHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH-----HHHHHHHHH--HhC
Q psy3701 226 LNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST-----FCCIGYIQA--LTG 298 (342)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~l~~~~~--~~g 298 (342)
........+.++|.++..+|++++|+..|+++++++|+.... +..++..+. ..+
T Consensus 194 -------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 194 -------------------SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp -------------------TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred -------------------ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 000112478899999999999999999999999999986643 445566554 467
Q ss_pred ChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 299 DLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 299 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
++++|+..|++++.++|.+...+..+...++.
T Consensus 255 ~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~~~ 286 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWKITILNKIKESIQQ 286 (292)
T ss_dssp THHHHHHHHTTSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHHHHhhc
Confidence 89999999999999999888777777776644
No 66
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.92 E-value=7.5e-24 Score=164.52 Aligned_cols=195 Identities=12% Similarity=-0.025 Sum_probs=130.9
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC 156 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 156 (342)
+++.++..|..++..|++++|+..|+++++.+|+++.+++..+.. ... ...+.....+|.++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-----~~~-------------~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVD-----KNS-------------EISSKLATELALAY 64 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSC-----TTS-------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhc-----chh-------------hhhHHHHHHHHHHH
Confidence 466778889999999999999999999999999888887763210 000 00112233477777
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHH
Q psy3701 157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK 236 (342)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----------------------- 121 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN----------------------- 121 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----------------------
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------------------
Confidence 777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhchhccCCCChHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701 237 VKQLGGEIIADKWEPLLNNLGHVNRKLKK--YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 314 (342)
+.+++++|.++...|+ ...+...+++++...| ...+++.+|.++...|++++|+.+|+++++++
T Consensus 122 -------------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 122 -------------LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred -------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4677777777765543 3455666666543222 22356667777777777777777777777777
Q ss_pred cCchhHHhHHHHH
Q psy3701 315 RDDSFATTMLSYV 327 (342)
Q Consensus 315 p~~~~~~~~l~~~ 327 (342)
|+.. +...+.++
T Consensus 188 P~~~-~~~~l~~i 199 (208)
T 3urz_A 188 PSTE-AQKTLDKI 199 (208)
T ss_dssp CCHH-HHHHHHHH
T ss_pred CCHH-HHHHHHHH
Confidence 7643 33334443
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.92 E-value=3.7e-23 Score=157.42 Aligned_cols=174 Identities=18% Similarity=0.152 Sum_probs=124.4
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701 112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY 191 (342)
Q Consensus 112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (342)
...+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666666666666666666666666666666777777777777777
Q ss_pred HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701 192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE 271 (342)
Q Consensus 192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 271 (342)
..|++++|+..+++++...|.+ ..++..+|.++...|++++|+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPIN------------------------------------FNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHh------------------------------------HHHHHHHHHHHHHcCcHHHHHH
Confidence 7777777777777777777666 4677777777777788888888
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHH
Q psy3701 272 FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFAT 321 (342)
Q Consensus 272 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 321 (342)
.++++++..|.++.++..+|.++...|++++|..+++++++..|+++...
T Consensus 132 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 132 SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhH
Confidence 88888777777777778888888888888888888888888777766543
No 68
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.92 E-value=1.7e-23 Score=177.81 Aligned_cols=246 Identities=12% Similarity=0.113 Sum_probs=201.1
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC-
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL- 110 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~- 110 (342)
...++.+|..+...|++++|+..|++++. ++.. +...|..+.+++.+|.++...|++++|+.++++++++.+.
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~-----~~~~-~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEK-----ELPF-VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----HHhh-CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 34566799999999999999999999740 0000 0112345789999999999999999999999999987543
Q ss_pred ------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC------CchHHHHHHHHHhhhCCHHHHHHHHHHHHh----
Q psy3701 111 ------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG------CHLPALYVGLECGLTNNARLASKFFDLALS---- 174 (342)
Q Consensus 111 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 174 (342)
...++..+|.++...|++++|+..+++++++.+. ...++..+|.++...|++++|+.++++++.
T Consensus 175 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 2457889999999999999999999999987542 234677899999999999999999999999
Q ss_pred -hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHH
Q psy3701 175 -IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLL 253 (342)
Q Consensus 175 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (342)
.+|..+.++..+|.++...|++++|+.++++++++.+..+ .+.....+
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------~~~~~~~~ 303 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS-------------------------------HKFYKELF 303 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC-------------------------------CSCHHHHH
T ss_pred hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-------------------------------CHHHHHHH
Confidence 7787888999999999999999999999999999977652 22223456
Q ss_pred HHHHHHHHHhhh---HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701 254 NNLGHVNRKLKK---YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR 315 (342)
Q Consensus 254 ~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 315 (342)
..++.++...|+ +.+|+.++++. ...|.....+..+|.+|...|++++|..+|+++++...
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 778888888887 88888888872 22344456788999999999999999999999987643
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.91 E-value=7e-23 Score=155.86 Aligned_cols=175 Identities=15% Similarity=0.064 Sum_probs=166.9
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154 (342)
Q Consensus 75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 154 (342)
+.....+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE 234 (342)
Q Consensus 155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (342)
++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--------------------- 143 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE--------------------- 143 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc---------------------
Confidence 99999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchH
Q psy3701 235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 285 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 285 (342)
..++..+|.++...|++++|+..++++++..|++..
T Consensus 144 ---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 144 ---------------GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp ---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred ---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 589999999999999999999999999999887653
No 70
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=2e-21 Score=170.78 Aligned_cols=232 Identities=11% Similarity=0.041 Sum_probs=136.8
Q ss_pred cHHHHHHHHHHHHH----hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh----hccHHHHHHHHHHHhccCCCCchH
Q psy3701 77 SAIAWYAVGCYYYL----IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAV----ENEHDQAMAAYFNAFNLFKGCHLP 148 (342)
Q Consensus 77 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~ 148 (342)
++.+++.+|.+|.. .+++++|+.+|+++.+. .++.++..+|.++.. .+++++|+.+|+++.+. .++.+
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 257 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIA 257 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHH
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence 34444444444444 44444444444444432 233444444444443 44455555555554443 23445
Q ss_pred HHHHHHHHhh----hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-----cChhHHHHHHHHHHHhhhhcCccccc
Q psy3701 149 ALYVGLECGL----TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN-----HNYTVAENCFMEALSKVKQLGGEIIA 219 (342)
Q Consensus 149 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~ 219 (342)
++.+|.++.. .+++++|+.+|+++.+. .++.+++.+|.++... +++++|+.+|+++.+..+..
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~------ 329 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDAT------ 329 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHH------
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHH------
Confidence 5555555555 55566666666655543 3455566666666655 56666666666665543222
Q ss_pred cchhhHHHHhhh---------hHHHHHHHhchhccCCCChHHHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCCchHH
Q psy3701 220 DKWEPLLNNLGH---------KAEDKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKAST 286 (342)
Q Consensus 220 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~ 286 (342)
....++. ...++...+...... ..+.+++++|.+|.. .+++++|+.+|+++++. .++.+
T Consensus 330 -----a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a 401 (490)
T 2xm6_A 330 -----AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAA 401 (490)
T ss_dssp -----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred -----HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHH
Confidence 1222221 223444444443222 457788889998888 78899999999998875 36788
Q ss_pred HHHHHHHHHH----hCChHHHHHHHHHHHhcc---cCchhHHhHHHHHH
Q psy3701 287 FCCIGYIQAL----TGDLDSAVNYFHKTMALK---RDDSFATTMLSYVI 328 (342)
Q Consensus 287 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~ 328 (342)
+..+|.+|.. .+++++|+.+|+++++.. |+++.+...++.+.
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 8889999888 889999999999999888 44777777765543
No 71
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.91 E-value=8e-24 Score=172.19 Aligned_cols=240 Identities=16% Similarity=0.138 Sum_probs=187.6
Q ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc--------CCCcHH
Q psy3701 43 EALENRALAADCYKGALLADLFKLAHELVDLY-PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL--------DKLFLP 113 (342)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~ 113 (342)
...|++++|+..|++++ .++.+....+ |..+.++..+|.++...|++++|+.++++++.. .|....
T Consensus 12 ~~~~~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQAL-----EDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA 86 (283)
T ss_dssp -CCSCSSSHHHHHHHHH-----HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 34677788888888764 4555555434 778899999999999999999999999999977 466678
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHHhcc--------CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh--------CC
Q psy3701 114 AWLMYGHSFAVENEHDQAMAAYFNAFNL--------FKGCHLPALYVGLECGLTNNARLASKFFDLALSI--------AH 177 (342)
Q Consensus 114 ~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~ 177 (342)
++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++.. .|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 8999999999999999999999999988 4666778889999999999999999999999998 66
Q ss_pred CChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH
Q psy3701 178 EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG 257 (342)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 257 (342)
....++..+|.++...|++++|+..++++++..+.... ....+.....+..++
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---------------------------~~~~~~~~~~~~~~~ 219 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF---------------------------GSVNGDNKPIWMHAE 219 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS---------------------------SSCCSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---------------------------CCcchhHHHHHHHHH
Confidence 66788999999999999999999999999998765410 001222344666666
Q ss_pred HHHHHhhh------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701 258 HVNRKLKK------YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 258 ~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 314 (342)
......+. +.++...++......|....++..+|.++...|++++|+.+|++++++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 220 EREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 66554333 4444444444444456667889999999999999999999999998763
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.91 E-value=6.5e-23 Score=174.60 Aligned_cols=222 Identities=15% Similarity=0.107 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhhc------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc-------
Q psy3701 80 AWYAVGCYYYLIGRSDPARRFLGKATSL------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH------- 146 (342)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------- 146 (342)
.++.+|.++...|++++|+.+|++++.+ .+..+.++..+|.++...|++++|+..+++++++.+...
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4455999999999999999999999987 223467899999999999999999999999999866543
Q ss_pred hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh------HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701 147 LPALYVGLECGLTNNARLASKFFDLALSIAHEDP------FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD 220 (342)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 220 (342)
.++..+|.++...|++++|+..+++++...+... .++.++|.++...|++++|+.++++++++.+...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~------ 258 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN------ 258 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc------
Confidence 4678899999999999999999999998765433 5789999999999999999999999999755442
Q ss_pred chhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHH
Q psy3701 221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA-----PMKASTFCCIGYIQA 295 (342)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~ 295 (342)
..+..+.++.++|.++...|++++|+.+++++++.. |.....+..+|.++.
T Consensus 259 ------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~ 314 (383)
T 3ulq_A 259 ------------------------ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL 314 (383)
T ss_dssp ------------------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred ------------------------cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 113336789999999999999999999999999874 333344677999999
Q ss_pred HhCC---hHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 296 LTGD---LDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 296 ~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
..|+ +++|+..+++. ...|....++..++.++...+
T Consensus 315 ~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 315 SGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp SSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCC
Confidence 9999 88899888887 455666677788888876654
No 73
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.91 E-value=5.9e-23 Score=159.43 Aligned_cols=161 Identities=13% Similarity=0.089 Sum_probs=110.0
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701 112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY 191 (342)
Q Consensus 112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (342)
++.++..|..+...|++++|+..|+++++.+|+++.+++..+.. .. ....+.....+|.++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-----~~-------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVD-----KN-------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSC-----TT-------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhc-----ch-------------hhhhHHHHHHHHHHHH
Confidence 34445555555555555555555555555555544444332210 00 0001223344999999
Q ss_pred HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701 192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE 271 (342)
Q Consensus 192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 271 (342)
..|++++|+..|+++++++|++ ..++..+|.++...|++++|+.
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~------------------------------------~~~~~~lg~~~~~~g~~~~A~~ 109 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNN------------------------------------VDCLEACAEMQVCRGQEKDALR 109 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCC------------------------------------HHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999998 5899999999999999999999
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHHhCC--hHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701 272 FHKQALVVAPMKASTFCCIGYIQALTGD--LDSAVNYFHKTMALKRDDSFATTMLSYV 327 (342)
Q Consensus 272 ~~~~al~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~ 327 (342)
.|+++++++|+++.+++.+|.++...|+ ...+...+++++...|.. .+++.++.+
T Consensus 110 ~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~g~~ 166 (208)
T 3urz_A 110 MYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YARYRDGLS 166 (208)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHHHHHHHH
Confidence 9999999999999999999999987764 456777888877554432 234444433
No 74
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.91 E-value=2.5e-24 Score=157.98 Aligned_cols=143 Identities=9% Similarity=0.085 Sum_probs=75.4
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhh
Q psy3701 152 VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH 231 (342)
Q Consensus 152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 231 (342)
+|.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+..|+++++++|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------------------ 64 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------------------ 64 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------
Confidence 34444455555555555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHH-HHHH
Q psy3701 232 KAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNY-FHKT 310 (342)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~a 310 (342)
+.+|..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|... ++++
T Consensus 65 ------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a 126 (150)
T 4ga2_A 65 ------------------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERA 126 (150)
T ss_dssp ------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 355555555555555555555555555555555555555555555555555544433 3555
Q ss_pred HhcccCchhHHhHHHHHHHH
Q psy3701 311 MALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 311 l~~~p~~~~~~~~l~~~~~~ 330 (342)
++++|+++.++...+.++..
T Consensus 127 l~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 127 AKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHSTTCHHHHHHHHHHHHT
T ss_pred HHhCcCCHHHHHHHHHHHHH
Confidence 55555555555555555443
No 75
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=9.8e-21 Score=166.38 Aligned_cols=238 Identities=15% Similarity=0.089 Sum_probs=136.0
Q ss_pred cHHHHHHHHHHHHH----hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh----hccHHHHHHHHHHHhccCCCCchH
Q psy3701 77 SAIAWYAVGCYYYL----IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAV----ENEHDQAMAAYFNAFNLFKGCHLP 148 (342)
Q Consensus 77 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~ 148 (342)
++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+
T Consensus 146 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 221 (490)
T 2xm6_A 146 RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELG 221 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHH
Confidence 34444444444444 44444444444444443 234444445544444 44455555555554443 23344
Q ss_pred HHHHHHHHhh----hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----hcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701 149 ALYVGLECGL----TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ----NHNYTVAENCFMEALSKVKQLGGEIIAD 220 (342)
Q Consensus 149 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~ 220 (342)
+..+|.++.. .+++++|+.+|+++.+. .++.+++.+|.++.. .+++++|+.+|+++.+..... ..
T Consensus 222 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~-----a~ 294 (490)
T 2xm6_A 222 QLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSD-----GQ 294 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHH-----HH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHH-----HH
Confidence 4445555443 44555555555555443 344555555555555 555566666666555432111 00
Q ss_pred chhhHHHHhh-----hhHHHHHHHhchhccCCCChHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhCCCchHHHHHHHH
Q psy3701 221 KWEPLLNNLG-----HKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK---KYEEALEFHKQALVVAPMKASTFCCIGY 292 (342)
Q Consensus 221 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~ 292 (342)
.........+ ....++...+..... ...+.+++.+|.++...| ++++|+.+|+++++. .++.+++.+|.
T Consensus 295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 371 (490)
T 2xm6_A 295 YYLAHLYDKGAEGVAKNREQAISWYTKSAE-QGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGN 371 (490)
T ss_dssp HHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 0001111111 222333333333222 234678888999988755 889999999999876 57888999999
Q ss_pred HHHH----hCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 293 IQAL----TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 293 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
+|.. .+++++|+.+|+++++. +++.++..|+.++..
T Consensus 372 ~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 372 ALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence 9998 89999999999999885 468888888888865
No 76
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.91 E-value=1.6e-23 Score=190.46 Aligned_cols=183 Identities=14% Similarity=-0.006 Sum_probs=174.8
Q ss_pred hcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHh--------ccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCC
Q psy3701 106 SLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAF--------NLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAH 177 (342)
Q Consensus 106 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 177 (342)
..+|+++.+++..+ ...|++++|++.+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 46788888877776 78999999999999999 89999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH
Q psy3701 178 EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG 257 (342)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 257 (342)
++..+++.+|.++...|++++|+..|+++++++|++ ..++.++|
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------------------------------------~~~~~~lg 508 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE------------------------------------LAPKLALA 508 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------------------------------------SHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------hHHHHHHH
Confidence 999999999999999999999999999999999999 48999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701 258 HVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI 328 (342)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 328 (342)
.++...|++++ +..|+++++.+|++..+++++|.++..+|++++|+..|+++++++|++..++..++.++
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999998886
No 77
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.91 E-value=6.3e-24 Score=155.83 Aligned_cols=147 Identities=12% Similarity=0.129 Sum_probs=110.9
Q ss_pred HhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcCh
Q psy3701 117 MYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY 196 (342)
Q Consensus 117 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (342)
.||.++...|++++|+..+++++...|.++..++.+|.+|...|++++|++.|+++++++|+++.+|..+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36777777777888888888887777777777777888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHH-HHH
Q psy3701 197 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEF-HKQ 275 (342)
Q Consensus 197 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~ 275 (342)
++|+..|+++++++|++ +.++..+|.++...|++++|... +++
T Consensus 82 ~~A~~~~~~al~~~p~~------------------------------------~~~~~~la~~~~~~~~~~~aa~~~~~~ 125 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQ------------------------------------KDLVLKIAELLCKNDVTDGRAKYWVER 125 (150)
T ss_dssp HHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHHCSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 88888888888887777 47778888888888877766554 477
Q ss_pred HHhhCCCchHHHHHHHHHHHHhCC
Q psy3701 276 ALVVAPMKASTFCCIGYIQALTGD 299 (342)
Q Consensus 276 al~~~~~~~~~~~~l~~~~~~~g~ 299 (342)
+++++|+++.++..++.++...|+
T Consensus 126 al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 126 AAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888777777777777664
No 78
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=5.8e-22 Score=175.90 Aligned_cols=221 Identities=13% Similarity=0.104 Sum_probs=201.3
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------hCChH-------HHHHHHHHHhh-cCCCcHHHHHHhhhHHHhhc
Q psy3701 62 DLFKLAHELVDLYPDSAIAWYAVGCYYYL-------IGRSD-------PARRFLGKATS-LDKLFLPAWLMYGHSFAVEN 126 (342)
Q Consensus 62 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~g 126 (342)
.++..+++++..+|.++.+|..+|..+.. .|+++ +|+..|+++++ ..|++...|..+|.++...|
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 45678888899999999999999999986 79987 99999999997 89999999999999999999
Q ss_pred cHHHHHHHHHHHhccCCCCc-hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHHhcChhHHHHHHH
Q psy3701 127 EHDQAMAAYFNAFNLFKGCH-LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI-AYQNHNYTVAENCFM 204 (342)
Q Consensus 127 ~~~~A~~~~~~al~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~ 204 (342)
++++|...|+++++..|.++ .+|..++..+.+.|++++|+..|+++++..|.....+...+.+ +...|++++|...|+
T Consensus 336 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 99999999999999999885 5899999999999999999999999999999888887777766 346899999999999
Q ss_pred HHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch
Q psy3701 205 EALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 284 (342)
Q Consensus 205 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 284 (342)
++++..|++ +.+|..++..+...|+.++|...|++++...|.++
T Consensus 416 ~al~~~p~~------------------------------------~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 416 LGLKKYGDI------------------------------------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHHHHHTTC------------------------------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHHHHCCCC------------------------------------HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 999999988 58999999999999999999999999999877655
Q ss_pred H----HHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 285 S----TFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 285 ~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
. +|..........|+.+.+..+++++++..|++.
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 4 888888888899999999999999999999644
No 79
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.90 E-value=1.3e-20 Score=153.49 Aligned_cols=231 Identities=10% Similarity=-0.009 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC----------hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhcc--H
Q psy3701 61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR----------SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE--H 128 (342)
Q Consensus 61 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~ 128 (342)
++|+.++..++..+|++..+|+..+.+....+. +++++.++++++..+|++..+|...+.++...|+ +
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 455666666789999999999999999988776 6899999999999999999999999999999994 8
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHHhhhCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--------------
Q psy3701 129 DQAMAAYFNAFNLFKGCHLPALYVGLECGLTNN-ARLASKFFDLALSIAHEDPFVIHEMGVIAYQN-------------- 193 (342)
Q Consensus 129 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------- 193 (342)
++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+..+|...+.++...
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~ 206 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 206 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccch
Confidence 999999999999999999999999999999998 69999999999999999999999999999887
Q ss_pred cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh----------
Q psy3701 194 HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL---------- 263 (342)
Q Consensus 194 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 263 (342)
+.++++++++.+++..+|++ ..+|+.+..++...
T Consensus 207 ~~~~eEle~~~~ai~~~P~d------------------------------------~SaW~Y~r~ll~~~~~~~~~~~~~ 250 (331)
T 3dss_A 207 NVLLKELELVQNAFFTDPND------------------------------------QSAWFYHRWLLGAGSGRCELSVEK 250 (331)
T ss_dssp HHHHHHHHHHHHHHHHSTTC------------------------------------HHHHHHHHHHHHSSSCGGGCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHhccCccccchHH
Confidence 56899999999999999999 46776665555544
Q ss_pred -hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHH---HhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701 264 -KKYEEALEFHKQALVVAPMKASTFCCIGYIQA---LTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327 (342)
Q Consensus 264 -g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 327 (342)
+.++++++.++++++..|++..++..++.+.. ..|..++...++.+.++++|....-+..+...
T Consensus 251 ~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 251 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 67899999999999999999766555554433 35788899999999999999988777666443
No 80
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.90 E-value=3.7e-22 Score=156.99 Aligned_cols=208 Identities=9% Similarity=-0.119 Sum_probs=158.2
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH---HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch---HHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL---PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL---PAL 150 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~ 150 (342)
++..++.+|..++..|++++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++..|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 467889999999999999999999999999988764 68999999999999999999999999999999875 678
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701 151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG 230 (342)
Q Consensus 151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 230 (342)
.+|.++...+.. ....+..++..+...|++++|+..|+++++..|+++.. + .+...+.
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a-----~-~a~~~l~ 140 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT-----T-DATKRLV 140 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTH-----H-HHHHHHH
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH-----H-HHHHHHH
Confidence 888888765531 11223455666667778888888888888888877410 0 0111111
Q ss_pred hhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHhCChHHHHHHH
Q psy3701 231 HKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---STFCCIGYIQALTGDLDSAVNYF 307 (342)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~ 307 (342)
..... .......+|.++...|++++|+..|+++++..|+++ .++..+|.++.++|++++|+..+
T Consensus 141 ~~~~~-------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 141 FLKDR-------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp HHHHH-------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHH-------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 11110 023456789999999999999999999999999876 67999999999999999999999
Q ss_pred HHHHhcccCchh
Q psy3701 308 HKTMALKRDDSF 319 (342)
Q Consensus 308 ~~al~~~p~~~~ 319 (342)
+++....|++.+
T Consensus 208 ~~l~~~~~~~~~ 219 (225)
T 2yhc_A 208 KIIAANSSNTLE 219 (225)
T ss_dssp HHHHHCCSCCCC
T ss_pred HHHHhhCCCchh
Confidence 999999998764
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.90 E-value=9.4e-23 Score=166.89 Aligned_cols=226 Identities=12% Similarity=0.049 Sum_probs=178.3
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701 32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF 111 (342)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 111 (342)
...+...|.++...|++++|+..|.+++ .+..+. ...+..+.++..+|.+|...|++++|+.+|++++++.|..
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al-----~~~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAA-----DYQKKA-GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHH-----HHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHh-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3445557889999999999999999975 121111 1112336799999999999999999999999999987754
Q ss_pred ------HHHHHHhhhHHHhh-ccHHHHHHHHHHHhccCCCC------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC
Q psy3701 112 ------LPAWLMYGHSFAVE-NEHDQAMAAYFNAFNLFKGC------HLPALYVGLECGLTNNARLASKFFDLALSIAHE 178 (342)
Q Consensus 112 ------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 178 (342)
..++..+|.++... |++++|+..|++++++.|.. ..++..+|.++..+|++++|+..|++++...|+
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 46789999999996 99999999999999998764 356778999999999999999999999999987
Q ss_pred ChH-------HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChH
Q psy3701 179 DPF-------VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP 251 (342)
Q Consensus 179 ~~~-------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (342)
+.. .+..+|.++..+|++++|+..|+++++++|... ......
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-------------------------------~~~~~~ 239 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA-------------------------------DSRESN 239 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------------------------------------HH
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-------------------------------CcHHHH
Confidence 653 578999999999999999999999999999873 111123
Q ss_pred HHHHHHHHHH--HhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHH
Q psy3701 252 LLNNLGHVNR--KLKKYEEALEFHKQALVVAPMKASTFCCIGYIQ 294 (342)
Q Consensus 252 ~~~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 294 (342)
.+..++..+. ..+++++|+..|++++.++|....++..+-...
T Consensus 240 ~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 240 FLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 4555666664 567899999999999998887776666555443
No 82
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=2.5e-23 Score=171.73 Aligned_cols=234 Identities=12% Similarity=0.017 Sum_probs=182.0
Q ss_pred hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc--------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC-
Q psy3701 72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL--------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF- 142 (342)
Q Consensus 72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 142 (342)
..+|....++..+|.++...|++++|+.++++++++ .|....++..+|.++...|++++|+..+++++...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 346778899999999999999999999999999984 67778899999999999999999999999999873
Q ss_pred -------CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHhcChhHHHHHHHHHH
Q psy3701 143 -------KGCHLPALYVGLECGLTNNARLASKFFDLALSIA--------HEDPFVIHEMGVIAYQNHNYTVAENCFMEAL 207 (342)
Q Consensus 143 -------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 207 (342)
|....++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+.++++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5556788889999999999999999999999874 4556789999999999999999999999999
Q ss_pred HhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC-----
Q psy3701 208 SKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM----- 282 (342)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----- 282 (342)
+...... ....+....++..+|.++...|++++|+..++++++..|.
T Consensus 181 ~~~~~~~----------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 181 EIYQTKL----------------------------GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp HHHHHTS----------------------------CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHh----------------------------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 9832220 0001112578999999999999999999999999976432
Q ss_pred ----ch------HHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701 283 ----KA------STFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE 333 (342)
Q Consensus 283 ----~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 333 (342)
.. ..+...+..+...+.+.+|...++++....|....++..++.++...++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 293 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK 293 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC
Confidence 22 3344445555667788888999999999999999999999999877653
No 83
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=6.6e-20 Score=162.69 Aligned_cols=189 Identities=10% Similarity=-0.001 Sum_probs=161.4
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHhhhHHHh-------hccHH-------HHHHHHHHHhc-cCCCCchHHHHHHHHHhhh
Q psy3701 95 DPARRFLGKATSLDKLFLPAWLMYGHSFAV-------ENEHD-------QAMAAYFNAFN-LFKGCHLPALYVGLECGLT 159 (342)
Q Consensus 95 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~l~~~~~~~ 159 (342)
.+++..|++++..+|.++.+|+.+|..+.. .|+++ +|+..|+++++ ..|++...|..++..+...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 367788888888888888888888888875 68876 88888999987 7888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHH
Q psy3701 160 NNARLASKFFDLALSIAHEDP-FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVK 238 (342)
Q Consensus 160 ~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (342)
|++++|...|+++++..|.++ .+|..+|.++...|++++|+..|+++++..|..
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~------------------------- 389 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------------------------- 389 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC-------------------------
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc-------------------------
Confidence 899999999999888888875 588888888888888889999998888876654
Q ss_pred HhchhccCCCChHHHHHHHHH-HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc
Q psy3701 239 QLGGEIIADKWEPLLNNLGHV-NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD 317 (342)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 317 (342)
...+...+.+ +...|++++|...|+++++..|+++.+|..++.++...|+.++|+..|++++...|.+
T Consensus 390 -----------~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 390 -----------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp -----------THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred -----------hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 3555555544 3468999999999999999999999999999999999999999999999999988776
Q ss_pred hh
Q psy3701 318 SF 319 (342)
Q Consensus 318 ~~ 319 (342)
+.
T Consensus 459 ~~ 460 (530)
T 2ooe_A 459 PE 460 (530)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 84
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.88 E-value=4.6e-22 Score=157.58 Aligned_cols=208 Identities=12% Similarity=0.004 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHh-------hhHHHhhccHHHHHHHHHHHhccCCCCchHHHH-
Q psy3701 80 AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMY-------GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY- 151 (342)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~- 151 (342)
.++..|.-+ ..+++..|...|.++++++|+.+++|..+ +.++...++..+++..+++.+.+.|....+++.
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 345555555 58999999999999999999999999999 899999999999999999999999886555554
Q ss_pred --------------------HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhh-
Q psy3701 152 --------------------VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKV- 210 (342)
Q Consensus 152 --------------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~- 210 (342)
++.++...|++++|.+.|...+...|++. ..+.+|.++++.++|++|+..|+++....
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d 166 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD 166 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence 67889999999999999999999999888 99999999999999999999998765542
Q ss_pred hhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC--CC-chHHH
Q psy3701 211 KQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA--PM-KASTF 287 (342)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~-~~~~~ 287 (342)
|... ..+++.+|.++..+|++++|+.+|++++.-. |. .+.++
T Consensus 167 ~~~~-----------------------------------~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~ 211 (282)
T 4f3v_A 167 KFLA-----------------------------------GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIA 211 (282)
T ss_dssp HHHH-----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHH
T ss_pred cccH-----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHH
Confidence 1110 2589999999999999999999999998644 55 66799
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701 288 CCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS 325 (342)
Q Consensus 288 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 325 (342)
+.+|.++..+|+.++|...|++++..+|+ +.+...|.
T Consensus 212 ~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 212 WYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999999999999999999999 77766653
No 85
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.88 E-value=3.3e-20 Score=150.50 Aligned_cols=207 Identities=12% Similarity=-0.026 Sum_probs=190.5
Q ss_pred HHhCC-hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc--cHHHHHHHHHHHhccCCCCchHHHHHHHHH----hhh--
Q psy3701 89 YLIGR-SDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN--EHDQAMAAYFNAFNLFKGCHLPALYVGLEC----GLT-- 159 (342)
Q Consensus 89 ~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~l~~~~----~~~-- 159 (342)
...|. .++|+..+.+++.++|++..+|...+.++...| ++++++..+.+++..+|.+..+|...+.++ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence 34444 469999999999999999999999999999999 999999999999999999999999999998 666
Q ss_pred -CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChh--HHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHH
Q psy3701 160 -NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT--VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK 236 (342)
Q Consensus 160 -~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
+++++++..+.++++.+|.+..+|...+.+....|+++ +++.+++++++.+|.+
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N----------------------- 179 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN----------------------- 179 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC-----------------------
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC-----------------------
Confidence 78999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHhchhccCCCChHHHHHHHHHHHHhhh------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHH-HHHHHHH
Q psy3701 237 VKQLGGEIIADKWEPLLNNLGHVNRKLKK------YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS-AVNYFHK 309 (342)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~ 309 (342)
..+|...+.++...|+ ++++++++++++..+|++..+|..++.++...|+... ...++.+
T Consensus 180 -------------~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 180 -------------NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp -------------HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred -------------HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 5899999999999887 9999999999999999999999999999999998655 5567788
Q ss_pred HHhcc---cCchhHHhHHHHHHHHh
Q psy3701 310 TMALK---RDDSFATTMLSYVIEQL 331 (342)
Q Consensus 310 al~~~---p~~~~~~~~l~~~~~~~ 331 (342)
++.++ |.++.++..++.++.+.
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred HHhccCCCCCCHHHHHHHHHHHHcc
Confidence 88776 88999999999888643
No 86
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.88 E-value=6.9e-21 Score=149.70 Aligned_cols=171 Identities=10% Similarity=-0.042 Sum_probs=154.2
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS---AIAWYAVGCYYYLIGRSDPARRFLGKATSL 107 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 107 (342)
....++.+|..+...|++++|+..|++. +...|.+ ..+++.+|.+++..|++++|+..|+++++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~------------~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEAL------------DNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH------------HHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3456788999999999999999999995 5777765 579999999999999999999999999999
Q ss_pred CCCcHH---HHHHhhhHHHh------------------hccHHHHHHHHHHHhccCCCCchHH-----------------
Q psy3701 108 DKLFLP---AWLMYGHSFAV------------------ENEHDQAMAAYFNAFNLFKGCHLPA----------------- 149 (342)
Q Consensus 108 ~~~~~~---~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~----------------- 149 (342)
+|+++. +++.+|.++.. .|++++|+..|+++++..|++..+.
T Consensus 71 ~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~ 150 (225)
T 2yhc_A 71 NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 150 (225)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 998864 78899988876 5799999999999999999988665
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 150 LYVGLECGLTNNARLASKFFDLALSIAHEDP---FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 150 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
..+|.++...|++++|+..|+++++..|+++ .++..+|.++..+|++++|+..++++....|++
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 5678899999999999999999999999986 679999999999999999999999998888876
No 87
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.88 E-value=2.3e-20 Score=158.30 Aligned_cols=295 Identities=11% Similarity=-0.012 Sum_probs=219.0
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-H----HHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701 29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS-A----IAWYAVGCYYYLIGRSDPARRFLGK 103 (342)
Q Consensus 29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~ 103 (342)
.....++..+|.++...|++++|+..+++++ ...|.. . .++..+|.++...|++++|+..+++
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 78 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLAL------------EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQ 78 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------------HcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3456677789999999999999999999974 444433 2 3678899999999999999999999
Q ss_pred HhhcCCCcH------HHHHHhhhHHHhhccHHHHHHHHHHHhccCC--------CCchHHHHHHHHHhhhCCHHHHHHHH
Q psy3701 104 ATSLDKLFL------PAWLMYGHSFAVENEHDQAMAAYFNAFNLFK--------GCHLPALYVGLECGLTNNARLASKFF 169 (342)
Q Consensus 104 a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~ 169 (342)
++...|... .++..+|.++...|++++|+..+++++...+ ....++..+|.++...|++++|...+
T Consensus 79 al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 158 (373)
T 1hz4_A 79 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 158 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 998765432 3467899999999999999999999998753 23345667999999999999999999
Q ss_pred HHHHhhCCCC-----hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccc-----hhhHHHHhhhhHHHHHHH
Q psy3701 170 DLALSIAHED-----PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK-----WEPLLNNLGHKAEDKVKQ 239 (342)
Q Consensus 170 ~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 239 (342)
++++...+.. ..++..+|.++...|++++|...+++++.+.+.......... ....+...|+. .++...
T Consensus 159 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~ 237 (373)
T 1hz4_A 159 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK-AAAANW 237 (373)
T ss_dssp HHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH-HHHHHH
Confidence 9999987753 457889999999999999999999999988655321100000 00112222322 233333
Q ss_pred hchhc-cCCC----ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC------chHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701 240 LGGEI-IADK----WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM------KASTFCCIGYIQALTGDLDSAVNYFH 308 (342)
Q Consensus 240 ~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 308 (342)
+.... ..+. ....+..+|.++...|++++|+..+++++...+. ...++..+|.++...|++++|...++
T Consensus 238 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 317 (373)
T 1hz4_A 238 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 317 (373)
T ss_dssp HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 33211 1111 1235678999999999999999999999876542 22478889999999999999999999
Q ss_pred HHHhcccCchhHHhH------HHHHHHHhhhcCC
Q psy3701 309 KTMALKRDDSFATTM------LSYVIEQLIEESP 336 (342)
Q Consensus 309 ~al~~~p~~~~~~~~------l~~~~~~~~~~~~ 336 (342)
+++.+.+........ +..++..+....|
T Consensus 318 ~al~~~~~~g~~~~~~~~g~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 318 DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccccHHHHHHHccHHHHHHHHHHHhCCC
Confidence 999998876644433 3445555554443
No 88
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.88 E-value=8.6e-22 Score=139.69 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=107.1
Q ss_pred HHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChH
Q psy3701 172 ALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP 251 (342)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (342)
+..++|+....+..+|..++..|+|++|+..|+++++++|.+ +.
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------~~ 48 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------------------------------------AI 48 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------HH
Confidence 345778888888899999999999999999999999998888 58
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI 328 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 328 (342)
++.++|.++..+|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..|+.++
T Consensus 49 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 49 LYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988888764
No 89
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.88 E-value=7e-20 Score=149.82 Aligned_cols=238 Identities=7% Similarity=-0.066 Sum_probs=199.2
Q ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-ChHHHHHHHHHHhhcCCCcHHHHHHhhhH
Q psy3701 43 EALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGHS 121 (342)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 121 (342)
...+..++|++++.+ ++..+|++..+|+..+.+....| .+++++.++++++..+|++..+|...+.+
T Consensus 65 ~~~e~se~AL~lt~~------------~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wl 132 (349)
T 3q7a_A 65 AKEEKSERALELTEI------------IVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLL 132 (349)
T ss_dssp HTTCCSHHHHHHHHH------------HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHH------------HHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 334444556666666 57999999999999999999999 59999999999999999999999999999
Q ss_pred HHhh-c-cHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHH--------HHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701 122 FAVE-N-EHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNAR--------LASKFFDLALSIAHEDPFVIHEMGVIAY 191 (342)
Q Consensus 122 ~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (342)
+... + ++++++..+.++++.+|.+..+|...+.+....|.++ ++++.++++++.+|.+..+|...+.++.
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9998 8 8999999999999999999999999999999998888 9999999999999999999999999999
Q ss_pred HhcC-------hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhh
Q psy3701 192 QNHN-------YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK 264 (342)
Q Consensus 192 ~~~~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (342)
..++ ++++++++++++..+|.+ ..+|+.+..++...|
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~n------------------------------------~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIPHN------------------------------------VSAWNYLRGFLKHFS 256 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHTT
T ss_pred hccccccchHHHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHhcC
Confidence 9887 689999999999999999 478888777777766
Q ss_pred hH--------------------HHHHHHHHHHHhhC------CCchHHHHHHHHHHHHhCChHHHHHHHHHHH-hcccCc
Q psy3701 265 KY--------------------EEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNYFHKTM-ALKRDD 317 (342)
Q Consensus 265 ~~--------------------~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~ 317 (342)
+. .+-.+.+...+... +.++.++..++.+|...|+.++|.+.|+... +.+|-.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 257 LPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp CCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred CCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence 53 22333333332222 4567788899999999999999999999987 678887
Q ss_pred hhHHhHHHHHH
Q psy3701 318 SFATTMLSYVI 328 (342)
Q Consensus 318 ~~~~~~l~~~~ 328 (342)
...|......+
T Consensus 337 ~~yw~~~~~~~ 347 (349)
T 3q7a_A 337 AGYWEFRRREC 347 (349)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 77776655443
No 90
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.87 E-value=7.6e-22 Score=149.05 Aligned_cols=170 Identities=8% Similarity=-0.109 Sum_probs=148.1
Q ss_pred CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG 153 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 153 (342)
+|...+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++......+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 3445567889999999999999999999999999999999999999999999999999999999999999 776655555
Q ss_pred HHH-hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhh
Q psy3701 154 LEC-GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHK 232 (342)
Q Consensus 154 ~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (342)
.+. ...+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|...
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------------------ 142 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ------------------ 142 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT------------------
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC------------------
Confidence 443 2334555689999999999999999999999999999999999999999999998752
Q ss_pred HHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701 233 AEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 278 (342)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 278 (342)
...++..+|.++...|+.++|+..|++++.
T Consensus 143 ----------------~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 143 ----------------DGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp ----------------TTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 135899999999999999999999999875
No 91
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.87 E-value=1.6e-21 Score=138.28 Aligned_cols=121 Identities=13% Similarity=0.002 Sum_probs=115.6
Q ss_pred HHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHH
Q psy3701 70 LVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPA 149 (342)
Q Consensus 70 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 149 (342)
+..++|+.++.+..+|..++..|++++|+..|+++++++|.++.+|..+|.++..+|++++|+..++++++++|+++.++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701 150 LYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA 190 (342)
Q Consensus 150 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 190 (342)
+.+|.++..+|++++|++.|+++++++|++..++..++.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999888764
No 92
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.87 E-value=1.7e-21 Score=147.18 Aligned_cols=168 Identities=14% Similarity=-0.012 Sum_probs=149.8
Q ss_pred CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701 108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG 187 (342)
Q Consensus 108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 187 (342)
+|...+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 3455567889999999999999999999999999999999999999999999999999999999999999 887777666
Q ss_pred HHHH-HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701 188 VIAY-QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY 266 (342)
Q Consensus 188 ~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (342)
.+.. ..++..+|+..++++++.+|++ ..+++.+|.++...|++
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~------------------------------------~~~~~~la~~~~~~g~~ 124 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDN------------------------------------FELACELAVQYNQVGRD 124 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTC------------------------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHHcccH
Confidence 5543 3345567899999999999998 58999999999999999
Q ss_pred HHHHHHHHHHHhhCCCc--hHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701 267 EEALEFHKQALVVAPMK--ASTFCCIGYIQALTGDLDSAVNYFHKTMA 312 (342)
Q Consensus 267 ~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 312 (342)
++|+..|+++++.+|+. ..++..+|.++...|+.++|+..|++++.
T Consensus 125 ~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 125 EEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999876 56999999999999999999999999875
No 93
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.87 E-value=3.8e-20 Score=157.23 Aligned_cols=221 Identities=13% Similarity=0.095 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhhcCC------CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC-------c
Q psy3701 80 AWYAVGCYYYLIGRSDPARRFLGKATSLDK------LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC-------H 146 (342)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~ 146 (342)
.++.+|..+...|++++|+.+|++++.+.+ ..+.++..+|.++...|++++|+..++++++..+.. .
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 577889999999999999999999998743 245689999999999999999999999999876542 3
Q ss_pred hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701 147 LPALYVGLECGLTNNARLASKFFDLALSIAHE------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD 220 (342)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 220 (342)
.++..+|.++...|++++|++.+++++.+.+. ...++.++|.++...|++++|+.++++++.+.+...
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~------ 256 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV------ 256 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC------
Confidence 45678999999999999999999999986432 235788999999999999999999999999654331
Q ss_pred chhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC-----CchHHHHHHHHHHH
Q psy3701 221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP-----MKASTFCCIGYIQA 295 (342)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~ 295 (342)
.+....++..+|.++...|++++|+.+++++++..+ .....+..++.++.
T Consensus 257 -------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~ 311 (378)
T 3q15_A 257 -------------------------PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK 311 (378)
T ss_dssp -------------------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHS
T ss_pred -------------------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 122267899999999999999999999999999854 33455677888888
Q ss_pred HhCC---hHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 296 LTGD---LDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 296 ~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
..|+ +.+|+.++++. ...|........++.++...+
T Consensus 312 ~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 312 ETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp SSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 8888 88888888873 344555566677777776544
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.87 E-value=1.4e-20 Score=153.37 Aligned_cols=169 Identities=12% Similarity=0.011 Sum_probs=144.9
Q ss_pred CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701 108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG 187 (342)
Q Consensus 108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 187 (342)
.|.+...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 37778888888888888888888888888888888888888888888888888888888888888888886666666777
Q ss_pred HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 267 (342)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (342)
..+...++.++|+..+++++..+|++ ..+++++|.++...|+++
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~------------------------------------~~~~~~la~~l~~~g~~~ 236 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPED------------------------------------AALATQLALQLHQVGRNE 236 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhcccCccHHHHHHHHhcCCcc------------------------------------HHHHHHHHHHHHHcccHH
Confidence 77888888888888899998888888 578888999999999999
Q ss_pred HHHHHHHHHHhhCCCc--hHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701 268 EALEFHKQALVVAPMK--ASTFCCIGYIQALTGDLDSAVNYFHKTMA 312 (342)
Q Consensus 268 ~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 312 (342)
+|+..|+++++.+|++ ..++..++.++...|+.++|...|++++.
T Consensus 237 ~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 237 EALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999988887 77888899999999998899888888875
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.87 E-value=9.3e-21 Score=154.47 Aligned_cols=172 Identities=10% Similarity=-0.022 Sum_probs=161.2
Q ss_pred cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701 73 LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV 152 (342)
Q Consensus 73 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 152 (342)
..|.+...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+........
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999766666667
Q ss_pred HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhh
Q psy3701 153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHK 232 (342)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (342)
+..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~------------------ 253 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA------------------ 253 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG------------------
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc------------------
Confidence 77788999999999999999999999999999999999999999999999999999999872
Q ss_pred HHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701 233 AEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 278 (342)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 278 (342)
...++..++.++...|+.++|+..|++++.
T Consensus 254 ----------------~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 254 ----------------DGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ----------------GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ----------------cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 137899999999999999999999999875
No 96
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.87 E-value=7e-20 Score=158.82 Aligned_cols=258 Identities=12% Similarity=0.011 Sum_probs=132.7
Q ss_pred HHHHHhHHHHhhccH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-----ChHHHHHHHHHHh
Q psy3701 34 LLLLKGRVYEALENR---ALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-----RSDPARRFLGKAT 105 (342)
Q Consensus 34 ~~~~~g~~~~~~~~~---~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~ 105 (342)
.++.+|.++...|+. ++|+..|+++ ++. ++.+++.+|.++...+ ++++|+.+|++++
T Consensus 37 A~~~Lg~~y~~~g~~~d~~~A~~~~~~A------------~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa 101 (452)
T 3e4b_A 37 AQVGLADIQVGTRDPAQIKQAEATYRAA------------ADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAF 101 (452)
T ss_dssp GGGTCC-------------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHH------------HhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHH
Confidence 344455555555555 5555555554 332 5666777777555544 5667777777776
Q ss_pred hcCCCcHHHHHHhhhHHHhhcc---------------------------------------HHHHHHHHHHHhccCCCCc
Q psy3701 106 SLDKLFLPAWLMYGHSFAVENE---------------------------------------HDQAMAAYFNAFNLFKGCH 146 (342)
Q Consensus 106 ~~~~~~~~~~~~la~~~~~~g~---------------------------------------~~~A~~~~~~al~~~~~~~ 146 (342)
+..+ +.+++.+|.+|...+. .+.+..+++.+...+|
T Consensus 102 ~~g~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~--- 176 (452)
T 3e4b_A 102 ANGE--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD--- 176 (452)
T ss_dssp HTTC--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---
T ss_pred HCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---
Confidence 6432 2244444444433322 2223333333333333
Q ss_pred hHHHHHHHHHhhhC---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh----cChhHHHHHHHHHHHhhhhcCccccc
Q psy3701 147 LPALYVGLECGLTN---NARLASKFFDLALSIAHEDPFVIHEMGVIAYQN----HNYTVAENCFMEALSKVKQLGGEIIA 219 (342)
Q Consensus 147 ~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~ 219 (342)
.+++.+|.++...| ++++|+.+|+++.+..|.....++.+|.+|... +++++|+.+|+++. |.++
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~----- 248 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP----- 248 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST-----
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH-----
Confidence 36666666666666 667777777777776666666666677666544 56667777777665 4443
Q ss_pred cchhhHHHHhhhh---------HHHHHHHhchhccCCCChHHHHHHHHHHHHhh-----hHHHHHHHHHHHHhhCCCchH
Q psy3701 220 DKWEPLLNNLGHK---------AEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK-----KYEEALEFHKQALVVAPMKAS 285 (342)
Q Consensus 220 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~ 285 (342)
.++.+++.. ..++...+.... ....+.+++++|.+|. .| ++++|+.+|+++. +.++.
T Consensus 249 ----~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~ 319 (452)
T 3e4b_A 249 ----ASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVA 319 (452)
T ss_dssp ----HHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHH
T ss_pred ----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHH
Confidence 222222221 223333333322 1224567777777776 44 7777777777776 66777
Q ss_pred HHHHHHHHHHH----hCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 286 TFCCIGYIQAL----TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 286 ~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
+++++|.+|.. ..++++|+.+|+++.+ ++++.+...|+.++..
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQ 366 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHh
Confidence 77777776665 3377777777777765 3556667777776653
No 97
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.86 E-value=1.1e-19 Score=157.60 Aligned_cols=275 Identities=12% Similarity=0.004 Sum_probs=196.8
Q ss_pred HHHHHHHHhHHHHhhc-----cHHHHHHHHHHHHH-----------------------HHHHHHHHHHHhcCCCcHHHHH
Q psy3701 31 KSALLLLKGRVYEALE-----NRALAADCYKGALL-----------------------ADLFKLAHELVDLYPDSAIAWY 82 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~-----~~~~A~~~~~~~~~-----------------------~~a~~~~~~~~~~~p~~~~~~~ 82 (342)
....++.+|.++...+ ++++|+..|+++.. .++...+.+.. .+.++.+++
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~--~~g~~~a~~ 145 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQ--AAGYPEAGL 145 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHH--HHTCTTHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH--HCCCHHHHH
Confidence 5667778888665554 88999999998752 01111222111 123456677
Q ss_pred HHHHHHHHhCChHHHH----HHHHHHhhcCCCcHHHHHHhhhHHHhhc---cHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701 83 AVGCYYYLIGRSDPAR----RFLGKATSLDKLFLPAWLMYGHSFAVEN---EHDQAMAAYFNAFNLFKGCHLPALYVGLE 155 (342)
Q Consensus 83 ~l~~~~~~~~~~~~A~----~~~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 155 (342)
.+|.+|...+.++++. .+++.+...+| .+++.+|.++...| ++++|+..|+++.+..|.....++.+|.+
T Consensus 146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~ 222 (452)
T 3e4b_A 146 AQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARV 222 (452)
T ss_dssp HHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777777544443 34444444444 38888888888888 88899999999988888877777888888
Q ss_pred Hhhh----CCHHHHHHHHHHHHhhCCCChHHHHHHHHH-H--HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH
Q psy3701 156 CGLT----NNARLASKFFDLALSIAHEDPFVIHEMGVI-A--YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN 228 (342)
Q Consensus 156 ~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 228 (342)
|... +++++|+.+|+++. |+++.+++.+|.+ + ...+++++|+.+|+++.+.... .+..+
T Consensus 223 y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~-----------~A~~~ 288 (452)
T 3e4b_A 223 LGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQP-----------RAELL 288 (452)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCH-----------HHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCH-----------HHHHH
Confidence 8765 68889999998887 8888888999988 4 4678889999999988865421 22223
Q ss_pred hhh----------hHHHHHHHhchhccCCCChHHHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHH
Q psy3701 229 LGH----------KAEDKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIGYIQ 294 (342)
Q Consensus 229 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 294 (342)
++. ...++...+.... +..+.+++++|.+|.. ..++++|+.+|+++.+ +.++.+.+++|.+|
T Consensus 289 Lg~~y~~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 289 LGKLYYEGKWVPADAKAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLF 364 (452)
T ss_dssp HHHHHHHCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHH
Confidence 332 3445555565555 7778999999999987 3499999999999987 46788999999999
Q ss_pred HH----hCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 295 AL----TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 295 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
.. ..++.+|..+|+++.+.. ++.+...+..+...
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~~ 402 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAP 402 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHTT
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHh
Confidence 85 569999999999999875 45666666666443
No 98
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.86 E-value=8.6e-19 Score=142.88 Aligned_cols=200 Identities=8% Similarity=-0.022 Sum_probs=180.3
Q ss_pred HhCChH-HHHHHHHHHhhcCCCcHHHHHHhhhHHHhhcc----------HHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701 90 LIGRSD-PARRFLGKATSLDKLFLPAWLMYGHSFAVENE----------HDQAMAAYFNAFNLFKGCHLPALYVGLECGL 158 (342)
Q Consensus 90 ~~~~~~-~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 158 (342)
..|.++ +|+.++.+++.++|++..+|...+.++...+. +++++.++..++..+|.+..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 456654 89999999999999999999999999988876 6899999999999999999999999999999
Q ss_pred hCC--HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC-hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701 159 TNN--ARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN-YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED 235 (342)
Q Consensus 159 ~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (342)
.++ +++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|.+
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N---------------------- 178 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN---------------------- 178 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC----------------------
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC----------------------
Confidence 984 8999999999999999999999999999999999 599999999999999999
Q ss_pred HHHHhchhccCCCChHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHh----
Q psy3701 236 KVKQLGGEIIADKWEPLLNNLGHVNRKL--------------KKYEEALEFHKQALVVAPMKASTFCCIGYIQALT---- 297 (342)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---- 297 (342)
..+|..++.++... +.++++++++.+++..+|++..+|+.+..++...
T Consensus 179 --------------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 179 --------------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp --------------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred --------------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 58999999998877 7799999999999999999999998766666554
Q ss_pred -------CChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701 298 -------GDLDSAVNYFHKTMALKRDDSFATTMLS 325 (342)
Q Consensus 298 -------g~~~~A~~~~~~al~~~p~~~~~~~~l~ 325 (342)
+.++++++++.+++++.|++......+.
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~ 279 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPENKWCLLTII 279 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHH
Confidence 4578999999999999999965544443
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.86 E-value=3.4e-20 Score=165.93 Aligned_cols=165 Identities=14% Similarity=0.064 Sum_probs=129.2
Q ss_pred hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHH
Q psy3701 91 IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFD 170 (342)
Q Consensus 91 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 170 (342)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|++.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47788899999999999998888999999999999999999999999999999888888889999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCCh
Q psy3701 171 LALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWE 250 (342)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (342)
++++.+|+++.++..+|.++...|++++|+..|+++++.+|++ .
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------~ 125 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------------------------------------P 125 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------H
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------H
Confidence 9999999888899999999999999999999999999888887 5
Q ss_pred HHHHHHHHHHHHh---hhHHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3701 251 PLLNNLGHVNRKL---KKYEEALEFHKQALVVAPMKASTFCCIG 291 (342)
Q Consensus 251 ~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~l~ 291 (342)
.++..+|.++... |++++|+..++++++.+|++...+..++
T Consensus 126 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 7888899999888 8999999999999998888877776665
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.86 E-value=1.9e-20 Score=167.52 Aligned_cols=164 Identities=11% Similarity=0.013 Sum_probs=139.1
Q ss_pred hccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHH
Q psy3701 125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFM 204 (342)
Q Consensus 125 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 204 (342)
.|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch
Q psy3701 205 EALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 284 (342)
Q Consensus 205 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 284 (342)
++++.+|++ ..++.++|.++...|++++|+..|+++++.+|++.
T Consensus 82 ~al~~~p~~------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 125 (568)
T 2vsy_A 82 QASDAAPEH------------------------------------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEP 125 (568)
T ss_dssp HHHHHCTTC------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhcCCCC------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 999999988 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh---CChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701 285 STFCCIGYIQALT---GDLDSAVNYFHKTMALKRDDSFATTML 324 (342)
Q Consensus 285 ~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l 324 (342)
.++..+|.++..+ |++++|...++++++.+|++...+..+
T Consensus 126 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 168 (568)
T 2vsy_A 126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL 168 (568)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHh
Confidence 9999999999999 999999999999999999876655443
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.85 E-value=6.5e-21 Score=157.11 Aligned_cols=203 Identities=11% Similarity=0.011 Sum_probs=117.3
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc------HH
Q psy3701 44 ALENRALAADCYKGALLADLFKLAHE-LVDLYPDS---AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF------LP 113 (342)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~a~~~~~~-~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~ 113 (342)
..|++++|.++++++... ... .....++. ...+...|.+|...|++++|+.+|.+++++.+.. ..
T Consensus 3 ~~~~~~eA~~~~~~a~k~-----~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~ 77 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKY-----LKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAK 77 (307)
T ss_dssp CHHHHHHHHHHHHHHHHH-----HCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH-----ccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 467888888888876410 000 00001111 2234445666666677777777777666654322 34
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHHhccCCCC------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC------hH
Q psy3701 114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC------HLPALYVGLECGLTNNARLASKFFDLALSIAHED------PF 181 (342)
Q Consensus 114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~ 181 (342)
++..+|.++...|++++|+.+|++++++.+.. ..++..+|.+|.. |++++|+.+|++++.+.|.. ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 56666666666677777777777666654321 2344556666666 66666666666666665544 34
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH
Q psy3701 182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR 261 (342)
Q Consensus 182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (342)
++..+|.++..+|++++|+..|++++.+.|... ..+.....+..+|.++.
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEME------------------------------NYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC------------------------------ChhHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666652 11111225555666666
Q ss_pred HhhhHHHHHHHHHHHHhhCCCc
Q psy3701 262 KLKKYEEALEFHKQALVVAPMK 283 (342)
Q Consensus 262 ~~g~~~~A~~~~~~al~~~~~~ 283 (342)
..|++++|+..|++++ .+|..
T Consensus 207 ~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 207 HRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HTTCHHHHHHHHHHHT-TSTTS
T ss_pred HcCCHHHHHHHHHHHh-CCCCC
Confidence 6666666666666666 66644
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.85 E-value=5.4e-21 Score=139.38 Aligned_cols=118 Identities=12% Similarity=0.006 Sum_probs=96.9
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhc
Q psy3701 165 ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI 244 (342)
Q Consensus 165 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (342)
+-..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|.+
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~------------------------------- 69 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN------------------------------- 69 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------------------------
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------------------
Confidence 3344566677788888888888888888888888888888888888887
Q ss_pred cCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 245 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
+.+|.++|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+.+|++++++.|+.+
T Consensus 70 -----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 70 -----VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred -----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 578888888888888888888888888888888888888888888888888888888888888888765
No 103
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.84 E-value=4.8e-19 Score=150.11 Aligned_cols=271 Identities=10% Similarity=-0.076 Sum_probs=190.4
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD---SAIAWYAVGCYYYLIGRSDPARRFLGKATSL 107 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 107 (342)
...++..+|.++...|++++|+..+++++ .+. ...++ ...++..+|.++...|++++|+..+++++..
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~----~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 122 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTE-----QMA----RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HHH----HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHH-----HHH----HhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34567789999999999999999999975 111 11111 2355788999999999999999999999986
Q ss_pred C--------CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC-----chHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701 108 D--------KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC-----HLPALYVGLECGLTNNARLASKFFDLALS 174 (342)
Q Consensus 108 ~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 174 (342)
. |....++..+|.++...|++++|...+++++...+.. ..++..+|.++...|++++|...+++++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 3345678889999999999999999999999987753 24567799999999999999999999987
Q ss_pred hCCC--ChHHHH-----HHHHHHHHhcChhHHHHHHHHHHHhhhhcCccc--cccchhhHHHHhhhhHHHHHHHhch---
Q psy3701 175 IAHE--DPFVIH-----EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI--IADKWEPLLNNLGHKAEDKVKQLGG--- 242 (342)
Q Consensus 175 ~~~~--~~~~~~-----~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--- 242 (342)
..+. .+..+. ..+.++...|++++|...+++++...+..+... .......++...|+. .++...+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~l~~a~~ 281 (373)
T 1hz4_A 203 LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF-EPAEIVLEELNE 281 (373)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCH-HHHHHHHHHHHH
T ss_pred HHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Confidence 6432 222222 345568899999999999999987665432000 001111222222322 122222221
Q ss_pred ----hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 243 ----EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 243 ----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
.........++..+|.++...|++++|...+++++...+... ....+...| +.....+++.+...|-+.
T Consensus 282 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g-----~~~~~~~~g--~~~~~ll~~~~~~~~~~~ 354 (373)
T 1hz4_A 282 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG-----FISHFVIEG--EAMAQQLRQLIQLNTLPE 354 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-----CCHHHHTTH--HHHHHHHHHHHHTTCSCH
T ss_pred HHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-----HHHHHHHcc--HHHHHHHHHHHhCCCCch
Confidence 111122335788899999999999999999999998764321 112233344 677888899999888644
No 104
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.84 E-value=1.1e-19 Score=147.62 Aligned_cols=217 Identities=13% Similarity=0.028 Sum_probs=168.2
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701 29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELV-DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL 107 (342)
Q Consensus 29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 107 (342)
.....++..+|.++...|++++|+..|++++ .+..+.. ..+|....++..+|.++...|++++|+.++++++..
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 114 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDAL-----AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-----HHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999974 2222111 235677889999999999999999999999999988
Q ss_pred --------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc--------CCCCchHHHHHHHHHhhhCCHHHHHHHHHH
Q psy3701 108 --------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL--------FKGCHLPALYVGLECGLTNNARLASKFFDL 171 (342)
Q Consensus 108 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 171 (342)
+|....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 194 (283)
T 3edt_B 115 REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKE 194 (283)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5777889999999999999999999999999998 666677888999999999999999999999
Q ss_pred HHhh---------CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch
Q psy3701 172 ALSI---------AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG 242 (342)
Q Consensus 172 ~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
++.. .+.....+..++......+....+..+ ..+........
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------------------- 245 (283)
T 3edt_B 195 ILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACK---------------------------- 245 (283)
T ss_dssp HHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCC----------------------------
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcC----------------------------
Confidence 9986 445566777777777765555444332 22222111110
Q ss_pred hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701 243 EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 280 (342)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 280 (342)
...+....++..+|.++...|++++|+.+++++++..
T Consensus 246 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 246 -VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred -CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 0112225789999999999999999999999998753
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.84 E-value=7.6e-21 Score=138.61 Aligned_cols=115 Identities=10% Similarity=0.059 Sum_probs=87.5
Q ss_pred HHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC
Q psy3701 99 RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHE 178 (342)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 178 (342)
..+++++.++|+++.+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 34566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
++.+++.+|.++..+|++++|+..|++++++.|+.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 77777777777777777777777777777777665
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.84 E-value=5e-19 Score=137.57 Aligned_cols=185 Identities=9% Similarity=-0.060 Sum_probs=129.1
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC----CHHHHHHHHHH
Q psy3701 96 PARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN----NARLASKFFDL 171 (342)
Q Consensus 96 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~ 171 (342)
+|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 456666666654 45667777777777777777777777777654 456667777777766 5 67777777777
Q ss_pred HHhhCCCChHHHHHHHHHHHH----hcChhHHHHHHHHHHHhhhh--cCccccccchhhHHHHhhhhHHHHHHHhchhcc
Q psy3701 172 ALSIAHEDPFVIHEMGVIAYQ----NHNYTVAENCFMEALSKVKQ--LGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII 245 (342)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
+.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..+. .
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~-------------------------------- 124 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA-------------------------------- 124 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH--------------------------------
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch--------------------------------
Confidence 743 4577777777777776 67777888888877777662 2
Q ss_pred CCCChHHHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHh-C-----ChHHHHHHHHHHHhccc
Q psy3701 246 ADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALT-G-----DLDSAVNYFHKTMALKR 315 (342)
Q Consensus 246 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~al~~~p 315 (342)
+.+++++|.+|.. .+++++|+.+|+++++. |.++.+++++|.+|... | ++++|+.+|+++.+..
T Consensus 125 ----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g- 198 (212)
T 3rjv_A 125 ----VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG- 198 (212)
T ss_dssp ----HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT-
T ss_pred ----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC-
Confidence 3677778888877 67788888888888777 56667778888877653 2 7888888888887763
Q ss_pred CchhHHhHHHH
Q psy3701 316 DDSFATTMLSY 326 (342)
Q Consensus 316 ~~~~~~~~l~~ 326 (342)
++.+...++.
T Consensus 199 -~~~A~~~l~~ 208 (212)
T 3rjv_A 199 -FDTGCEEFDR 208 (212)
T ss_dssp -CHHHHHHHHH
T ss_pred -CHHHHHHHHH
Confidence 4444554443
No 107
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=1.9e-18 Score=160.68 Aligned_cols=263 Identities=11% Similarity=0.021 Sum_probs=192.0
Q ss_pred HhHHHHhhccHHHHHHHHHHHHH-HHH-------HHHHHHHHh--cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701 38 KGRVYEALENRALAADCYKGALL-ADL-------FKLAHELVD--LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL 107 (342)
Q Consensus 38 ~g~~~~~~~~~~~A~~~~~~~~~-~~a-------~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 107 (342)
.|.++...|.+++|..+|+++.. .+| +.-++++++ ...+.+.+|+.+|.++...|++++|+..|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 58899999999999999998752 221 112222222 13467999999999999999999999999886
Q ss_pred CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701 108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG 187 (342)
Q Consensus 108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 187 (342)
+++..+..+|.++...|++++|+++|..+.+..+. +.+...+|.+|.+++++++ ++.|. ...+...+..+|
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVG 1202 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHH
Confidence 77899999999999999999999999999988854 3334468899999988885 44332 223445667899
Q ss_pred HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 267 (342)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (342)
..+...|+|++|..+|.++-.. ......+..+++ .+.+.....+. ....+|...+.++...|+|.
T Consensus 1203 d~le~eg~YeeA~~~Y~kA~ny----------~rLA~tLvkLge-~q~AIEaarKA----~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNVSNF----------GRLASTLVHLGE-YQAAVDGARKA----NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhhhHH----------HHHHHHHHHhCC-HHHHHHHHHHh----CCHHHHHHHHHHHhhhhHHH
Confidence 9999999999999999886210 011122222332 23333333222 22356777777777777777
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701 268 EALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331 (342)
Q Consensus 268 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 331 (342)
.|..+... +.. +++.+..++..|...|.+++|+.++++++.++|.+...+..|+.++.++
T Consensus 1268 LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1268 LAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 77766553 332 3445568889999999999999999999999999999999898887664
No 108
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.83 E-value=1.1e-21 Score=163.47 Aligned_cols=184 Identities=11% Similarity=-0.017 Sum_probs=138.7
Q ss_pred CChHHHHHHHHH----HhhcCCCcHHHHHHhhhHHH------------hhccHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701 92 GRSDPARRFLGK----ATSLDKLFLPAWLMYGHSFA------------VENEHDQAMAAYFNAFNLFKGCHLPALYVGLE 155 (342)
Q Consensus 92 ~~~~~A~~~~~~----a~~~~~~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 155 (342)
+.+++|+..+++ ++.+.|.. ++...|.... ..+++++|+..+++++...|....++..+|.+
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~ 156 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV 156 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 355666666666 66666665 4444443332 45566667777777666667667777777777
Q ss_pred HhhhCCHHHHHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701 156 CGLTNNARLASKFFDLALSIAHED---------------PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD 220 (342)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 220 (342)
+...|++++|+..|++++.+.|++ ..++.++|.++...|++++|+..|+++++++|.+
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~------- 229 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN------- 229 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------
Confidence 777777777777777777777776 5788888888888888888888888888888887
Q ss_pred chhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCCh
Q psy3701 221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDL 300 (342)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 300 (342)
..+++++|.++..+|++++|+..|+++++++|++..++..++.++...|++
T Consensus 230 -----------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 230 -----------------------------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888888888888888888888888888888888
Q ss_pred HHH-HHHHHHHHhc
Q psy3701 301 DSA-VNYFHKTMAL 313 (342)
Q Consensus 301 ~~A-~~~~~~al~~ 313 (342)
++| ...|++++..
T Consensus 281 ~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 281 LAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 888 4566666543
No 109
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.83 E-value=5e-20 Score=149.63 Aligned_cols=198 Identities=14% Similarity=0.014 Sum_probs=122.3
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154 (342)
Q Consensus 75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 154 (342)
|.++..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666666666655555666
Q ss_pred HHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE 234 (342)
Q Consensus 155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (342)
++...|++++|+..|+++++++|+++..+.......... .++..........
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------------------------- 132 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKRWNSIEERR------------------------- 132 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHHHHHHHHTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHHHHHHHHHH-------------------------
Confidence 666666666666666665555554321111111111110 1111111111111
Q ss_pred HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHh-CChHHHHHHHHHHHhc
Q psy3701 235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALT-GDLDSAVNYFHKTMAL 313 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~ 313 (342)
.+....+...++..+ .|++++|++.++++++.+|++......++.++... +++++|.+.|.++.+.
T Consensus 133 -----------~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 133 -----------IHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp -----------CCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred -----------HhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 222235556666654 79999999999999999999988888888888776 7789999999998764
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.83 E-value=8.1e-20 Score=133.41 Aligned_cols=126 Identities=13% Similarity=0.048 Sum_probs=104.6
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhcc
Q psy3701 166 SKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII 245 (342)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
...+++++..+|++...++.+|.++...|++++|+..|++++..+|.+
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------------- 54 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-------------------------------- 54 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------------
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc--------------------------------
Confidence 345777888888888888888888888888888888888888888887
Q ss_pred CCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701 246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS 325 (342)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 325 (342)
+.+|..+|.++...|++++|+..|++++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.......
T Consensus 55 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 55 ----SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred ----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 5788888888888888888888888888888888888888888888888888888888888888888776554444
Q ss_pred HH
Q psy3701 326 YV 327 (342)
Q Consensus 326 ~~ 327 (342)
.+
T Consensus 131 ~~ 132 (148)
T 2vgx_A 131 RV 132 (148)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 111
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.83 E-value=1.6e-19 Score=143.06 Aligned_cols=207 Identities=14% Similarity=-0.014 Sum_probs=176.9
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-------HHHHHHhCChHHHHHHHHHHhhcC
Q psy3701 36 LLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAV-------GCYYYLIGRSDPARRFLGKATSLD 108 (342)
Q Consensus 36 ~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~a~~~~ 108 (342)
+..|.-+ ..+++..|...|.++ +..+|+.+++|..+ +.++...++..+++..+++.+.+.
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a------------~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~ 77 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEI------------TNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS 77 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHH------------HHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC
T ss_pred HHHHhcc-cCCCHHHHHHHHHHH------------HHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444444 578999999999995 69999999999999 899999999999999999999988
Q ss_pred CCcHHHH---------------------HHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHH
Q psy3701 109 KLFLPAW---------------------LMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASK 167 (342)
Q Consensus 109 ~~~~~~~---------------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 167 (342)
|....++ ..++.++...|++++|.+.|...+...|++. +.+.+|.++...+++++|+.
T Consensus 78 p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 78 MSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVID 156 (282)
T ss_dssp GGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHH
Confidence 8754444 4477899999999999999999999999888 89999999999999999999
Q ss_pred HHHHHHhhCCCC--hHHHHHHHHHHHHhcChhHHHHHHHHHHHhh--hhcCccccccchhhHHHHhhhhHHHHHHHhchh
Q psy3701 168 FFDLALSIAHED--PFVIHEMGVIAYQNHNYTVAENCFMEALSKV--KQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGE 243 (342)
Q Consensus 168 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
.|+++....+.. ..+++.+|.++..+|++++|+..|++++... |..
T Consensus 157 ~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~------------------------------ 206 (282)
T 4f3v_A 157 QVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC------------------------------ 206 (282)
T ss_dssp HHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT------------------------------
T ss_pred HHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc------------------------------
Confidence 999876643211 3589999999999999999999999998533 221
Q ss_pred ccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHH
Q psy3701 244 IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGY 292 (342)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 292 (342)
...+++.+|.++..+|+.++|...|++++..+|+ ..++..|..
T Consensus 207 -----~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 207 -----ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp -----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 2578999999999999999999999999999999 777666543
No 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.82 E-value=4.3e-21 Score=159.90 Aligned_cols=190 Identities=12% Similarity=0.040 Sum_probs=166.5
Q ss_pred HHHHhhccHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH------------HhCChHHHHHHHHH
Q psy3701 40 RVYEALENRALAADCYKG----ALLADLFKLAHELVDLYPDSAIAWYAVGCYYY------------LIGRSDPARRFLGK 103 (342)
Q Consensus 40 ~~~~~~~~~~~A~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~ 103 (342)
..+...+.+++|+..++. + +...|.. ++...|.... .++++++|+..+++
T Consensus 73 ~~~~~~~~~e~al~~~~~Ge~~~------------l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~ 138 (336)
T 1p5q_A 73 ENLDLPYGLERAIQRMEKGEHSI------------VYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEM 138 (336)
T ss_dssp GGGTCCHHHHHHHTTCCTTCEEE------------EEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGC
T ss_pred CccccchHHHHHHhcCCCCCeEE------------EEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcC
Confidence 444456678888888887 4 3667765 4555554432 56778899999999
Q ss_pred HhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC---------------chHHHHHHHHHhhhCCHHHHHHH
Q psy3701 104 ATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC---------------HLPALYVGLECGLTNNARLASKF 168 (342)
Q Consensus 104 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~ 168 (342)
++..+|.++.++..+|.++...|++++|+..|++++.+.|.+ ..++..+|.++...|++++|+..
T Consensus 139 a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 218 (336)
T 1p5q_A 139 NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES 218 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999999999999999998 48999999999999999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCC
Q psy3701 169 FDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADK 248 (342)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|.+
T Consensus 219 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----------------------------------- 263 (336)
T 1p5q_A 219 CNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN----------------------------------- 263 (336)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-----------------------------------
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-----------------------------------
Confidence 999999999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHhhhHHHH-HHHHHHHHhh
Q psy3701 249 WEPLLNNLGHVNRKLKKYEEA-LEFHKQALVV 279 (342)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~ 279 (342)
..++..++.++...|++++| ...|++++..
T Consensus 264 -~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 264 -KAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999 5577777653
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.82 E-value=4.7e-19 Score=145.98 Aligned_cols=205 Identities=12% Similarity=0.058 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHH
Q psy3701 59 LLADLFKLAHELVDLYPDSAIAWYAVGCYYYL-IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFN 137 (342)
Q Consensus 59 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 137 (342)
.+.+|..+++++.+..+.. ++. .+++++|..+|.++ |.++...|++++|+..|.+
T Consensus 6 ~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHH
Confidence 3456777777776655532 122 57889999888876 5678888999999999999
Q ss_pred HhccCCCC------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC--C----hHHHHHHHHHHHHhcChhHHHHHHHH
Q psy3701 138 AFNLFKGC------HLPALYVGLECGLTNNARLASKFFDLALSIAHE--D----PFVIHEMGVIAYQNHNYTVAENCFME 205 (342)
Q Consensus 138 al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 205 (342)
++++.+.. ..++..+|.++...|++++|+.+|++++.+.+. + ..++..+|.++.. |++++|+.+|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 98886542 346677899999999999999999999887543 2 3567889999988 999999999999
Q ss_pred HHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc--
Q psy3701 206 ALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-- 283 (342)
Q Consensus 206 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 283 (342)
++.+.+... .......++.++|.++..+|++++|+.+|++++++.|.+
T Consensus 141 Al~~~~~~~------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 141 AAAVFENEE------------------------------RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHTT------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCC------------------------------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 999887653 011114788999999999999999999999999876543
Q ss_pred ----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701 284 ----ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF 319 (342)
Q Consensus 284 ----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 319 (342)
...+..+|.++..+|++++|+.+|++++ ++|+...
T Consensus 191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 2477888899999999999999999999 8887653
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.82 E-value=4.6e-18 Score=139.13 Aligned_cols=218 Identities=6% Similarity=-0.113 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc-cHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN-EHDQAMAAYFNAFNLFKGCHLPALYVGLEC 156 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 156 (342)
..++..+..+....+..++|+.++.+++.++|++..+|...+.++...| .+++++..+.+++..+|.+..+|...+.++
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4445555555555667789999999999999999999999999999999 599999999999999999999999999999
Q ss_pred hhh-C-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChh--------HHHHHHHHHHHhhhhcCccccccchhhHH
Q psy3701 157 GLT-N-NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT--------VAENCFMEALSKVKQLGGEIIADKWEPLL 226 (342)
Q Consensus 157 ~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 226 (342)
... + +++++++.+.++++.+|.+..+|...+.+....|+++ +++++++++++.+|.+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N------------- 200 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN------------- 200 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC-------------
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC-------------
Confidence 988 7 9999999999999999999999999999999999998 9999999999999999
Q ss_pred HHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh-------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCC
Q psy3701 227 NNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-------YEEALEFHKQALVVAPMKASTFCCIGYIQALTGD 299 (342)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 299 (342)
..+|...+.++...++ ++++++++++++..+|++..+|..+..++...|+
T Consensus 201 -----------------------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 201 -----------------------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp -----------------------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred -----------------------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 5899999999998886 7999999999999999999999999999988887
Q ss_pred h--------------------HHHHHHHHHHHhcc------cCchhHHhHHHHHHHHh
Q psy3701 300 L--------------------DSAVNYFHKTMALK------RDDSFATTMLSYVIEQL 331 (342)
Q Consensus 300 ~--------------------~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~ 331 (342)
. .+-.......+... +..+.+...|+.++...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 315 (349)
T 3q7a_A 258 PLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQ 315 (349)
T ss_dssp CSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHT
T ss_pred CcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhc
Confidence 5 22222222332222 45667788887777643
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.81 E-value=3.5e-18 Score=132.81 Aligned_cols=173 Identities=13% Similarity=-0.017 Sum_probs=152.4
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc----cHHHHHHHHHHHhccCCCCchHHH
Q psy3701 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN----EHDQAMAAYFNAFNLFKGCHLPAL 150 (342)
Q Consensus 75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~ 150 (342)
..++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+++.+ +.++.+++
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~ 89 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEI 89 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHH
Confidence 478999999999999999999999999999876 578999999999998 7 99999999999965 57889999
Q ss_pred HHHHHHhh----hCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHH----hcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701 151 YVGLECGL----TNNARLASKFFDLALSIAH--EDPFVIHEMGVIAYQ----NHNYTVAENCFMEALSKVKQLGGEIIAD 220 (342)
Q Consensus 151 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~ 220 (342)
.+|.+|.. .+++++|+.+|+++.+..| .++.+++.+|.+|.. .+++++|+.+|+++.+. +.+
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~------- 161 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT------- 161 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT-------
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC-------
Confidence 99999998 8999999999999999887 358999999999999 88999999999999988 444
Q ss_pred chhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh-h-----hHHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3701 221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL-K-----KYEEALEFHKQALVVAPMKASTFCCIG 291 (342)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~al~~~~~~~~~~~~l~ 291 (342)
+.+++++|.+|... | ++++|+.+|+++.+... ..+...++
T Consensus 162 -----------------------------~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~ 207 (212)
T 3rjv_A 162 -----------------------------GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFD 207 (212)
T ss_dssp -----------------------------THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence 36899999999764 3 89999999999998754 44444444
No 116
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.80 E-value=5.7e-19 Score=128.19 Aligned_cols=126 Identities=16% Similarity=0.114 Sum_probs=100.6
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccC
Q psy3701 167 KFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIA 246 (342)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|.+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------------- 51 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--------------------------------- 51 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---------------------------------
Confidence 45667777778888888888888888888888888888888888877
Q ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701 247 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326 (342)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 326 (342)
..+|..+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+.+|+++++++|+++........
T Consensus 52 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 52 ---ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 57888888888888888888888888888888888888888888888888888888888888888887766555544
Q ss_pred HH
Q psy3701 327 VI 328 (342)
Q Consensus 327 ~~ 328 (342)
+.
T Consensus 129 ~~ 130 (142)
T 2xcb_A 129 AG 130 (142)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 117
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.80 E-value=8.3e-19 Score=128.04 Aligned_cols=116 Identities=15% Similarity=0.020 Sum_probs=101.1
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch
Q psy3701 68 HELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL 147 (342)
Q Consensus 68 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 147 (342)
++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+++.
T Consensus 11 ~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 90 (148)
T 2vgx_A 11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90 (148)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred HHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 33568888888889999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHH
Q psy3701 148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVI 183 (342)
Q Consensus 148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 183 (342)
+++.+|.++...|++++|+..|+++++..|+++...
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 888899999999999999999999988888876553
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.80 E-value=5.7e-18 Score=121.42 Aligned_cols=134 Identities=23% Similarity=0.329 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701 79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL 158 (342)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 158 (342)
.+++.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+...+..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhh
Q psy3701 159 TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212 (342)
Q Consensus 159 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 212 (342)
.|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999999999998875
No 119
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.80 E-value=1e-17 Score=120.03 Aligned_cols=133 Identities=23% Similarity=0.337 Sum_probs=107.7
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHH
Q psy3701 148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN 227 (342)
Q Consensus 148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 227 (342)
++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------------- 68 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------------- 68 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc--------------
Confidence 566677777778888888888888888788788888888888888888888888888888877766
Q ss_pred HhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHH
Q psy3701 228 NLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYF 307 (342)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 307 (342)
...+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|..++
T Consensus 69 ----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 69 ----------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp ----------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ----------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 4677788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhcccC
Q psy3701 308 HKTMALKRD 316 (342)
Q Consensus 308 ~~al~~~p~ 316 (342)
+++++.+|+
T Consensus 127 ~~~~~~~~~ 135 (136)
T 2fo7_A 127 QKALELDPR 135 (136)
T ss_dssp HHHHHHSTT
T ss_pred HHHHccCCC
Confidence 888887775
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=6.8e-19 Score=155.77 Aligned_cols=188 Identities=7% Similarity=-0.035 Sum_probs=156.1
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhcc----------HHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC--C
Q psy3701 94 SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE----------HDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN--N 161 (342)
Q Consensus 94 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~--~ 161 (342)
.++|+..+++++..+|++..+|...+.++...|+ +++++..+.++++.+|.+..+|...+.++...+ +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 3567788888888888888888888888877777 788888888888888888888888888888888 6
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc-ChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHh
Q psy3701 162 ARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH-NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240 (342)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (342)
++++++.++++++.+|.+..+|...+.+....| .++++++++.++++.+|.+
T Consensus 125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n--------------------------- 177 (567)
T 1dce_A 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--------------------------- 177 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC---------------------------
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC---------------------------
Confidence 688888888888888888888888888888888 7888888888888888877
Q ss_pred chhccCCCChHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHH----
Q psy3701 241 GGEIIADKWEPLLNNLGHVNRKL--------------KKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS---- 302 (342)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~---- 302 (342)
..+|..++.++... +.++++++++.+++..+|++..+|+.++.++...+++++
T Consensus 178 ---------~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~ 248 (567)
T 1dce_A 178 ---------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCV 248 (567)
T ss_dssp ---------HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEE
T ss_pred ---------ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeee
Confidence 47888888877764 789999999999999999999999999999999998776
Q ss_pred --------HHHHHHHHHhcccCc
Q psy3701 303 --------AVNYFHKTMALKRDD 317 (342)
Q Consensus 303 --------A~~~~~~al~~~p~~ 317 (342)
|+.+|.+++.++|..
T Consensus 249 ~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 249 HVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp EEETTTTEEEEEEEEEECTTBTT
T ss_pred eeccCCceEEEEeccceeccccc
Confidence 666788888888764
No 121
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=2.7e-19 Score=149.68 Aligned_cols=222 Identities=13% Similarity=0.013 Sum_probs=107.7
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH
Q psy3701 33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL 112 (342)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 112 (342)
.+|..+|.++...|++++|++.|.++ .++..+..++..+...|++++|+.+++.+.+..++ +
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika-----------------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~ 94 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA-----------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-S 94 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC-----------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-c
Confidence 58889999999999999999999773 25568888899999999999999999988885444 6
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy3701 113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ 192 (342)
Q Consensus 113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (342)
.+...++.+|.+.|+++++.+.++. | +..++..+|..+...|++++|..+|.++ ..|..+|.++.+
T Consensus 95 ~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~ 160 (449)
T 1b89_A 95 YVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH 160 (449)
T ss_dssp --------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHH
Confidence 7788899999999999998877742 4 3458889999999999999999999976 358899999999
Q ss_pred hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHH
Q psy3701 193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEF 272 (342)
Q Consensus 193 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 272 (342)
+|++++|++.++++ .+ +.+|...+.++...|+++.|..+
T Consensus 161 Lg~yq~AVea~~KA-----~~------------------------------------~~~Wk~v~~aCv~~~ef~lA~~~ 199 (449)
T 1b89_A 161 LGEYQAAVDGARKA-----NS------------------------------------TRTWKEVCFACVDGKEFRLAQMC 199 (449)
T ss_dssp TTCHHHHHHHHHHH-----TC------------------------------------HHHHHHHHHHHHHTTCHHHHHHT
T ss_pred hccHHHHHHHHHHc-----CC------------------------------------chhHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999998 23 47888889999999999999777
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701 273 HKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331 (342)
Q Consensus 273 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 331 (342)
... +...|+. ...+..+|.+.|++++|+.++++++.++|.+...++.|+.++.++
T Consensus 200 ~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 200 GLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp TTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 665 3344443 446888899999999999999999999999999999998887654
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.79 E-value=2.9e-17 Score=134.34 Aligned_cols=176 Identities=10% Similarity=-0.036 Sum_probs=148.9
Q ss_pred CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH------HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC--
Q psy3701 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL------PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC-- 145 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 145 (342)
+|.....+...+..+...|++++|+..++++++..|... ..++.+|.++...|++++|+..+++++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 455667778889999999999999999999999877654 346678899999999999999999999876543
Q ss_pred ----chHHHHHHHHHhhhCCHHHHHHHHHHHH---hhCCCCh----HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701 146 ----HLPALYVGLECGLTNNARLASKFFDLAL---SIAHEDP----FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214 (342)
Q Consensus 146 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 214 (342)
..++..+|.+|...|++++|+.+|++++ +..|++. .+++++|.++..+|++++|+.++++++++.+...
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 3477789999999999999999999999 5566643 5889999999999999999999999999886542
Q ss_pred ccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHH-HHHHHHHHhh
Q psy3701 215 GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEA-LEFHKQALVV 279 (342)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~ 279 (342)
.......++.++|.++..+|++++| ..++++++.+
T Consensus 231 ------------------------------~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 231 ------------------------------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp ------------------------------BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ------------------------------cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 2223357899999999999999999 7889998865
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.78 E-value=3.7e-18 Score=138.60 Aligned_cols=181 Identities=10% Similarity=0.004 Sum_probs=148.1
Q ss_pred CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy3701 109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGV 188 (342)
Q Consensus 109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 188 (342)
|.++..+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHH
Q psy3701 189 IAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEE 268 (342)
Q Consensus 189 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 268 (342)
++...|++++|+..|+++++++|+++ ......++..+ +..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~-------------------------------~~~~~~~~~~~--------~~~~ 121 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQR-------------------------------LNFGDDIPSAL--------RIAK 121 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTT-------------------------------CCCCSHHHHHH--------HHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccch-------------------------------hhHHHHHHHHH--------HHHH
Confidence 99999999999999999999999873 00001111111 1122
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 269 ALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 269 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
+...........|.+..+...++.+. .|++++|++.++++++.+|++......+..++..
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 181 (281)
T 2c2l_A 122 KKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAK 181 (281)
T ss_dssp HHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHH
Confidence 22333333356677788777777765 7999999999999999999988776666554433
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.78 E-value=4.4e-18 Score=123.45 Aligned_cols=115 Identities=14% Similarity=-0.021 Sum_probs=84.0
Q ss_pred HHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC
Q psy3701 99 RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHE 178 (342)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 178 (342)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
++.+++.+|.++...|++++|+..|+++++++|.+
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 77777777777777777777777777777777766
No 125
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=7.2e-18 Score=119.69 Aligned_cols=117 Identities=12% Similarity=0.072 Sum_probs=103.8
Q ss_pred CChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH
Q psy3701 178 EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG 257 (342)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 257 (342)
..+..+..+|..++..|++++|+..|+++++.+|.+ +.++.++|
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------------------------------~~~~~~~a 45 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------------------------------------ARGYSNRA 45 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------------------------------------hHHHHHHH
Confidence 345678889999999999999999999999998888 58899999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc------cCchhHHhHHHHHHHH
Q psy3701 258 HVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK------RDDSFATTMLSYVIEQ 330 (342)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 330 (342)
.++...|++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++ |++..++..+..+...
T Consensus 46 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 46 AALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999 8888888888887654
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=8.5e-19 Score=155.14 Aligned_cols=185 Identities=9% Similarity=-0.011 Sum_probs=167.8
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC----------hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc--cHH
Q psy3701 62 DLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR----------SDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN--EHD 129 (342)
Q Consensus 62 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~~ 129 (342)
+|+..+.+++..+|++..+|+..+.+....|+ +++++.+++++++.+|++..+|...+.++...| +++
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~ 126 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 126 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHH
Confidence 33444444679999999999999999999998 999999999999999999999999999999999 779
Q ss_pred HHHHHHHHHhccCCCCchHHHHHHHHHhhhC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--------------c
Q psy3701 130 QAMAAYFNAFNLFKGCHLPALYVGLECGLTN-NARLASKFFDLALSIAHEDPFVIHEMGVIAYQN--------------H 194 (342)
Q Consensus 130 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~ 194 (342)
++++.+.++++.+|.+..+|.+.+.+....| .++++++++.++++.+|.+..+|...+.++... +
T Consensus 127 ~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~ 206 (567)
T 1dce_A 127 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN 206 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH
T ss_pred HHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999885 6
Q ss_pred ChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHH------
Q psy3701 195 NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEE------ 268 (342)
Q Consensus 195 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~------ 268 (342)
.++++++++.+++..+|++. .+|+.++.++...+++++
T Consensus 207 ~~~eel~~~~~ai~~~P~~~------------------------------------saW~y~~~ll~~~~~~~~~~~~~~ 250 (567)
T 1dce_A 207 VLLKELELVQNAFFTDPNDQ------------------------------------SAWFYHRWLLGRAEPHDVLCCVHV 250 (567)
T ss_dssp HHHHHHHHHHHHHHHCSSCS------------------------------------HHHHHHHHHHSCCCCCSCEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCc------------------------------------cHHHHHHHHHhcCCCccceeeeee
Confidence 68999999999999999994 899999999998888666
Q ss_pred ------HHHHHHHHHhhCCC
Q psy3701 269 ------ALEFHKQALVVAPM 282 (342)
Q Consensus 269 ------A~~~~~~al~~~~~ 282 (342)
|+..|.+++.++|.
T Consensus 251 ~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 251 SREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp ETTTTEEEEEEEEEECTTBT
T ss_pred ccCCceEEEEeccceecccc
Confidence 55667777766665
No 127
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.78 E-value=1.3e-16 Score=128.01 Aligned_cols=189 Identities=13% Similarity=0.048 Sum_probs=152.9
Q ss_pred HHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCC--CCchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701 97 ARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK--GCHLPALYVGLECGLTNNARLASKFFDLALS 174 (342)
Q Consensus 97 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 174 (342)
|+..+++.+...+....++..+|.++...|++++|++.+.+.+..+| .+..++...+.++...|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 56677777766556667778999999999999999999999988887 7778888899999999999999999999988
Q ss_pred hCCC------ChHHHHHHHHHHHHhc--ChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccC
Q psy3701 175 IAHE------DPFVIHEMGVIAYQNH--NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIA 246 (342)
Q Consensus 175 ~~~~------~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
.+|+ ...+...-|.+....| ++++|...|+++.+..|+..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~-------------------------------- 212 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK-------------------------------- 212 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH--------------------------------
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc--------------------------------
Confidence 8883 2333333455566666 89999999999887776510
Q ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh----------CCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701 247 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV----------APMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316 (342)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 316 (342)
....+.+ ++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+
T Consensus 213 --~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 213 --TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp --HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred --cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 0133333 899999999999999988776 48899999999999999998 899999999999999
Q ss_pred chhHHhHH
Q psy3701 317 DSFATTML 324 (342)
Q Consensus 317 ~~~~~~~l 324 (342)
++.+...-
T Consensus 286 hp~i~d~~ 293 (310)
T 3mv2_B 286 HAFIKHHQ 293 (310)
T ss_dssp CHHHHHHH
T ss_pred ChHHHHHH
Confidence 99876653
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.77 E-value=5.3e-18 Score=127.98 Aligned_cols=133 Identities=11% Similarity=0.117 Sum_probs=112.0
Q ss_pred HhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701 156 CGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED 235 (342)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (342)
+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------------- 77 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---------------------- 77 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----------------------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------------------
Confidence 4567888889999999999999999999999999999999999999999999988887
Q ss_pred HHHHhchhccCCCChHHHHHHHHH-HHHhhhH--HHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701 236 KVKQLGGEIIADKWEPLLNNLGHV-NRKLKKY--EEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312 (342)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 312 (342)
..++..+|.+ +...|++ ++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++
T Consensus 78 --------------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 78 --------------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp --------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5788889988 7788888 9999999999999999999999999999999999999999999999
Q ss_pred cccCchhHHhHH
Q psy3701 313 LKRDDSFATTML 324 (342)
Q Consensus 313 ~~p~~~~~~~~l 324 (342)
++|+++.....+
T Consensus 144 ~~p~~~~~~~~~ 155 (177)
T 2e2e_A 144 LNSPRINRTQLV 155 (177)
T ss_dssp TCCTTSCHHHHH
T ss_pred hCCCCccHHHHH
Confidence 999887655443
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.76 E-value=5e-17 Score=132.96 Aligned_cols=178 Identities=10% Similarity=-0.021 Sum_probs=147.0
Q ss_pred CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc------hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC--
Q psy3701 108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH------LPALYVGLECGLTNNARLASKFFDLALSIAHED-- 179 (342)
Q Consensus 108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-- 179 (342)
+|.....+...+..+...|++++|+..+.++++..+... ..+..+|.++...|++++|+..+++++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 344455677888999999999999999999999887644 234568888999999999999999999876543
Q ss_pred ----hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCC-ChHHHH
Q psy3701 180 ----PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADK-WEPLLN 254 (342)
Q Consensus 180 ----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 254 (342)
..++..+|.+|...|++++|+.+|+++++.....+ ..+. ...++.
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~------------------------------~~~~~~~~~~~ 200 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH------------------------------DNEEFDVKVRY 200 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC------------------------------CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC------------------------------ccccchHHHHH
Confidence 45889999999999999999999999997654432 0000 125899
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCC------chHHHHHHHHHHHHhCChHHH-HHHHHHHHhccc
Q psy3701 255 NLGHVNRKLKKYEEALEFHKQALVVAPM------KASTFCCIGYIQALTGDLDSA-VNYFHKTMALKR 315 (342)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~p 315 (342)
++|.+|..+|++++|+.+++++++..++ ...++.++|.++..+|++++| ..++++++.+..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987532 267899999999999999999 888999987653
No 130
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.3e-17 Score=118.30 Aligned_cols=118 Identities=10% Similarity=-0.127 Sum_probs=109.8
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154 (342)
Q Consensus 75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 154 (342)
|..+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHH
Q psy3701 155 ECGLTNNARLASKFFDLALSIA------HEDPFVIHEMGVIAYQ 192 (342)
Q Consensus 155 ~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~ 192 (342)
++...|++++|+..|+++++++ |.+..++..++.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999 8888888888777644
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.76 E-value=9e-17 Score=124.97 Aligned_cols=145 Identities=17% Similarity=0.093 Sum_probs=99.7
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701 112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY 191 (342)
Q Consensus 112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (342)
...++.+|.++...|++++|+..|++++ .| ++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3456777888888888888888888775 22 56677778888888888888888888888888888888888888888
Q ss_pred HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhc----cCCCChHHHHHHHHHHHHhhhHH
Q psy3701 192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI----IADKWEPLLNNLGHVNRKLKKYE 267 (342)
Q Consensus 192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~ 267 (342)
..|++++|+..|+++++..|.+... .... ..+....++.++|.++...|+++
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 138 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLI------------------------DYKILGLQFKLFACEVLYNIAFMYAKKEEWK 138 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEE------------------------ECGGGTBCCEEEHHHHHHHHHHHHHHTTCHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHH------------------------HHHHhccccCccchHHHHHHHHHHHHccCHH
Confidence 8888888888888888777766100 0000 01112256666666666666666
Q ss_pred HHHHHHHHHHhhCCCc
Q psy3701 268 EALEFHKQALVVAPMK 283 (342)
Q Consensus 268 ~A~~~~~~al~~~~~~ 283 (342)
+|+..|+++++..|++
T Consensus 139 ~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 139 KAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHcCccc
Confidence 6666666666666654
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.76 E-value=4.6e-17 Score=121.24 Aligned_cols=137 Identities=12% Similarity=-0.021 Sum_probs=127.7
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC 156 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 156 (342)
.+..+..+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCChHHHHHHH--HHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 157 GLTNNARLASKFFDLALSIAHEDPFVIHEMG--VIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
...|++++|+..+++++..+|.+..++..++ ..+...|++++|+..+.++....+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 150 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 150 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhccc
Confidence 9999999999999999999999998885554 44888999999999999988776554
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.76 E-value=6.3e-17 Score=132.37 Aligned_cols=171 Identities=10% Similarity=-0.059 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHH------HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch-----
Q psy3701 79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLP------AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL----- 147 (342)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 147 (342)
..+...+..++..|++++|...+++++...+..+. .+..+|.++...|++++|+..+++++...+....
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 34455688899999999999999999998776654 3345899999999999999999999997654332
Q ss_pred -HHHHHHHHHhhhCCHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccc
Q psy3701 148 -PALYVGLECGLTNNARLASKFFDLALSIA-------HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIA 219 (342)
Q Consensus 148 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 219 (342)
++..+|.+|...|++++|+.+|+++++.. +....++.++|.++..+|++++|+.++++++++.+...
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~----- 230 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN----- 230 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC-----
Confidence 57889999999999999999999999532 22345789999999999999999999999999987763
Q ss_pred cchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhh-hHHHHHHHHHHHHhh
Q psy3701 220 DKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK-KYEEALEFHKQALVV 279 (342)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~ 279 (342)
.....+.++.++|.++..+| .+++|+.+|++++.+
T Consensus 231 -------------------------~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 231 -------------------------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp -------------------------BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -------------------------cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 23334679999999999999 479999999999875
No 134
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=5e-16 Score=144.75 Aligned_cols=256 Identities=12% Similarity=0.056 Sum_probs=197.3
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
...+|+.+|.++...|++++|++.|.++ +++..+..+|.++.+.|++++|+++|..+.+..++
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 3678888999999999999999999874 67889999999999999999999999999988754
Q ss_pred cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701 111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA 190 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 190 (342)
+.+...+|.+|.+.+++++ ++.|. ...+...+..+|..+...|++++|..+|.++ ..|..+|.++
T Consensus 1167 -~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tL 1231 (1630)
T 1xi4_A 1167 -SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTL 1231 (1630)
T ss_pred -ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHH
Confidence 3334458999999999885 44442 2334466778999999999999999999986 4688999999
Q ss_pred HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHh---hhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701 191 YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNL---GHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 267 (342)
Q Consensus 191 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (342)
.++|++++|++.++++... ..|....... +++..... .... -...++.+..++..|...|.++
T Consensus 1232 vkLge~q~AIEaarKA~n~----------~aWkev~~acve~~Ef~LA~~-cgl~---Iiv~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1232 VHLGEYQAAVDGARKANST----------RTWKEVCFACVDGKEFRLAQM-CGLH---IVVHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHhCCHHHHHHHHHHhCCH----------HHHHHHHHHHhhhhHHHHHHH-HHHh---hhcCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998332 2233222211 11111111 1111 1122456678999999999999
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHH--hCChHHHHHHHHHHHhccc-----CchhHHhHHHHHHHHhh
Q psy3701 268 EALEFHKQALVVAPMKASTFCCIGYIQAL--TGDLDSAVNYFHKTMALKR-----DDSFATTMLSYVIEQLI 332 (342)
Q Consensus 268 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~ 332 (342)
+|+.++++++.++|.+...+..+|.++.+ -++..++.+.|...+.+.| ++...|..+..++.+..
T Consensus 1298 EAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~ 1369 (1630)
T 1xi4_A 1298 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 1369 (1630)
T ss_pred HHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999888888764 5678889999999888877 67777777777765543
No 135
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.75 E-value=1e-16 Score=124.68 Aligned_cols=134 Identities=16% Similarity=0.229 Sum_probs=120.3
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
....++.+|..+...|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++..+|+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--------------~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 69 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--------------DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 69 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--------------SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--------------CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 34456778999999999999999999952 34 6789999999999999999999999999999999
Q ss_pred cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc----------------hHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701 111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH----------------LPALYVGLECGLTNNARLASKFFDLALS 174 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 174 (342)
++.++..+|.++...|++++|+..|+++++..|.+. .++..+|.++...|++++|+..++++++
T Consensus 70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888877 7888899999999999999999999999
Q ss_pred hCCCC
Q psy3701 175 IAHED 179 (342)
Q Consensus 175 ~~~~~ 179 (342)
..|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 98876
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.75 E-value=4.9e-18 Score=130.64 Aligned_cols=161 Identities=13% Similarity=-0.005 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc-------------
Q psy3701 80 AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH------------- 146 (342)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------- 146 (342)
.....+......|+++++.+.+.......+.....+..+|..+...|++++|+..|++++...|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 3344555666677777777777766666666677788888888888888888888888888888776
Q ss_pred ---hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchh
Q psy3701 147 ---LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE 223 (342)
Q Consensus 147 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 223 (342)
.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++++|.+
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------- 155 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN---------- 155 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----------
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----------
Confidence 7788899999999999999999999999999999999999999999999999999999999998887
Q ss_pred hHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHH-HHHHHH
Q psy3701 224 PLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEAL-EFHKQA 276 (342)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a 276 (342)
..++..++.++...++..++. ..+.+.
T Consensus 156 --------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 156 --------------------------LDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHC---------
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888887776 333333
No 137
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.75 E-value=2.5e-17 Score=118.41 Aligned_cols=128 Identities=14% Similarity=0.031 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV 259 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (342)
...+...|..++..|+|++|+..|+++++++|+++... .....+....+|.++|.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~------------------------a~~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE------------------------AFDHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS------------------------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh------------------------hhhhccchHHHHHHHHHH
Confidence 44578889999999999999999999999999854110 000001113499999999
Q ss_pred HHHhhhHHHHHHHHHHHHhh-------CCCchHHH----HHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701 260 NRKLKKYEEALEFHKQALVV-------APMKASTF----CCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI 328 (342)
Q Consensus 260 ~~~~g~~~~A~~~~~~al~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 328 (342)
+..+|++++|+..|++++++ +|++..+| +++|.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999999999999999 99999999 99999999999999999999999999999998777776665
Q ss_pred HHh
Q psy3701 329 EQL 331 (342)
Q Consensus 329 ~~~ 331 (342)
+..
T Consensus 147 ~~~ 149 (159)
T 2hr2_A 147 EVA 149 (159)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.75 E-value=5e-18 Score=130.57 Aligned_cols=166 Identities=16% Similarity=0.088 Sum_probs=121.7
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701 151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG 230 (342)
Q Consensus 151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 230 (342)
..+......|+++++.+.+.......+.....+..+|..++..|++++|+..|++++...|.++.... .. ..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----~~---~~ 80 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD-----QI---LL 80 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC-----HH---HH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccch-----hh---HH
Confidence 34445555666666666666555555556677888899999999999999999999988877631000 00 00
Q ss_pred hhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701 231 HKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT 310 (342)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 310 (342)
..... ....++.++|.++...|++++|+..++++++.+|++..+++.+|.++..+|++++|+.+|+++
T Consensus 81 ~~~~~------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 81 DKKKN------------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHH------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHH------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 00000 003689999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCchhHHhHHHHHHHHhhhcCC
Q psy3701 311 MALKRDDSFATTMLSYVIEQLIEESP 336 (342)
Q Consensus 311 l~~~p~~~~~~~~l~~~~~~~~~~~~ 336 (342)
++++|+++.++..++.++....+...
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887765443
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.74 E-value=4.9e-17 Score=115.83 Aligned_cols=126 Identities=13% Similarity=0.060 Sum_probs=120.4
Q ss_pred hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHH
Q psy3701 72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY 151 (342)
Q Consensus 72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 151 (342)
..+|.++..+..+|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|.++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChh
Q psy3701 152 VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT 197 (342)
Q Consensus 152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (342)
+|.++...|++++|+..+++++...|+++.++..+|.++...|+++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999998863
No 140
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.74 E-value=1.4e-16 Score=130.28 Aligned_cols=172 Identities=10% Similarity=-0.024 Sum_probs=141.8
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchH------HHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC------hH
Q psy3701 114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLP------ALYVGLECGLTNNARLASKFFDLALSIAHED------PF 181 (342)
Q Consensus 114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~ 181 (342)
.+...+..+...|++++|+..+++++...+..+.. +..+|.++...+++++|+..+++++...+.. ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 34455778899999999999999999987765542 2247888888999999999999999865443 23
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH
Q psy3701 182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR 261 (342)
Q Consensus 182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (342)
++..+|.+|...|++++|+.+|+++++.....++ ..+....+++++|.+|.
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------~~~~~~~~~~nlg~~y~ 207 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHD-----------------------------NEEFDVKVRYNHAKALY 207 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-----------------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-----------------------------chhHHHHHHHHHHHHHH
Confidence 6899999999999999999999999976544310 11122568999999999
Q ss_pred HhhhHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHHhCC-hHHHHHHHHHHHhcc
Q psy3701 262 KLKKYEEALEFHKQALVVAPMK------ASTFCCIGYIQALTGD-LDSAVNYFHKTMALK 314 (342)
Q Consensus 262 ~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~ 314 (342)
.+|++++|+.++++++++.+.. +.++..+|.++..+|+ +++|+.+|++++.+.
T Consensus 208 ~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999876433 6889999999999995 699999999999864
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.74 E-value=6.6e-17 Score=115.62 Aligned_cols=123 Identities=11% Similarity=-0.013 Sum_probs=118.1
Q ss_pred cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701 73 LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV 152 (342)
Q Consensus 73 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 152 (342)
..|.++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC
Q psy3701 153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN 195 (342)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (342)
|.++...|++++|+..+++++..+|.+..++..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999988764
No 142
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.74 E-value=1.8e-16 Score=127.31 Aligned_cols=224 Identities=15% Similarity=0.029 Sum_probs=173.3
Q ss_pred HHHHHHhHHHHhhccHH---------HHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701 33 ALLLLKGRVYEALENRA---------LAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGK 103 (342)
Q Consensus 33 ~~~~~~g~~~~~~~~~~---------~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 103 (342)
...+.+.+++..+|++. +|+..|-+-+...++..+++.+...+.+..++..+|.++...|++++|++++.+
T Consensus 46 ~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~~~~~~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~ 125 (310)
T 3mv2_B 46 TLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVE 125 (310)
T ss_dssp HHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHHHHTTTCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHhcccHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455667777777663 466666655555577777777777666677788999999999999999999999
Q ss_pred HhhcCC--CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC------CchHHHHHHHHHhhhC--CHHHHHHHHHHHH
Q psy3701 104 ATSLDK--LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG------CHLPALYVGLECGLTN--NARLASKFFDLAL 173 (342)
Q Consensus 104 a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~ 173 (342)
.+..+| .+.+++..++.++..+|+.+.|.+.++++.+.+|+ .......-+++....| ++++|..+|+++.
T Consensus 126 ~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~ 205 (310)
T 3mv2_B 126 GIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS 205 (310)
T ss_dssp HHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH
T ss_pred HhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 999987 88999999999999999999999999999999882 2233333455566666 9999999999999
Q ss_pred hhCCC--ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChH
Q psy3701 174 SIAHE--DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP 251 (342)
Q Consensus 174 ~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (342)
...|+ .+..+.+ ++..+|++++|...++.+++..|.... +....|..+.
T Consensus 206 ~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~--------------------------k~~~~p~~~~ 256 (310)
T 3mv2_B 206 QTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQ--------------------------KENAVLYKPT 256 (310)
T ss_dssp TTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTT--------------------------CHHHHSSHHH
T ss_pred HhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccc--------------------------cccCCCCCHH
Confidence 88886 2333333 899999999999999988887544100 0000122268
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHH
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF 287 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 287 (342)
++.+++.+....|+ +|.++++++.+.+|+++.+.
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 88899888888997 89999999999999998654
No 143
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.74 E-value=1.7e-16 Score=117.83 Aligned_cols=138 Identities=15% Similarity=0.157 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcc--ccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGE--IIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG 257 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 257 (342)
...+...|..++..|+|++|+..|++++...+..... .....+ ....+....++.++|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~nla 70 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VELDRKNIPLYANMS 70 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999883322000 000000 000122257999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch-hHHhHHHHHHHHhhhcCC
Q psy3701 258 HVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS-FATTMLSYVIEQLIEESP 336 (342)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~ 336 (342)
.++..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|+++ .+...+..+.....+...
T Consensus 71 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA 150 (162)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 778888888777665544
Q ss_pred C
Q psy3701 337 P 337 (342)
Q Consensus 337 ~ 337 (342)
.
T Consensus 151 ~ 151 (162)
T 3rkv_A 151 D 151 (162)
T ss_dssp S
T ss_pred H
Confidence 3
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.73 E-value=8.9e-17 Score=119.61 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=75.1
Q ss_pred CChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH
Q psy3701 178 EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG 257 (342)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 257 (342)
.+...+..+|.++...|++++|+..|+++++++|.+ ..++.++|
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------~~~~~~l~ 52 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------------------------------------PIYLSNRA 52 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------------------------------------HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------------------------------------HHHHHHHH
Confidence 345566667777777777777777777777776666 46677777
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHH
Q psy3701 258 HVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFAT 321 (342)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 321 (342)
.++...|++++|+..|+++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..++
T Consensus 53 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 53 AAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 7777777777777777777777777777777777777777777777777777777777766633
No 145
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.73 E-value=1.9e-16 Score=117.94 Aligned_cols=130 Identities=12% Similarity=0.026 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHH
Q psy3701 148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN 227 (342)
Q Consensus 148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 227 (342)
.+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++.+|.+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-------------- 80 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-------------- 80 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--------------
Confidence 344555556666666666666666666666666666666666666666666666666666666555
Q ss_pred HhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHH--HHHHHhCChHHHHH
Q psy3701 228 NLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIG--YIQALTGDLDSAVN 305 (342)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~--~~~~~~g~~~~A~~ 305 (342)
..++..+|.++...|++++|+..++++++.+|++..++..++ ..+...|++++|+.
T Consensus 81 ----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 81 ----------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666666666666655553333 33555666666666
Q ss_pred HHHHHHhc
Q psy3701 306 YFHKTMAL 313 (342)
Q Consensus 306 ~~~~al~~ 313 (342)
.+.++..+
T Consensus 139 ~~~~~~~~ 146 (166)
T 1a17_A 139 GDEHKRSV 146 (166)
T ss_dssp HHHHHHHH
T ss_pred cccchHHH
Confidence 66655443
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.73 E-value=4.9e-17 Score=121.02 Aligned_cols=119 Identities=9% Similarity=-0.083 Sum_probs=109.8
Q ss_pred cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701 73 LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV 152 (342)
Q Consensus 73 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 152 (342)
.++.++..++.+|.+++..|++++|+.+|+++++++|+++.++..+|.++...|++++|+..|+++++++|.+..+++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701 153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY 191 (342)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (342)
|.++...|++++|+..|+++++++|++...+...+....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999887766665433
No 147
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.73 E-value=5.2e-19 Score=153.43 Aligned_cols=145 Identities=14% Similarity=0.021 Sum_probs=93.0
Q ss_pred hccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC---------------hHHHHHHHHH
Q psy3701 125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHED---------------PFVIHEMGVI 189 (342)
Q Consensus 125 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~ 189 (342)
.+++++|+..|++++...|.....+..+|..+...|++++|+..|++++.+.|.+ ..++.++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555555555 4667777777
Q ss_pred HHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHH
Q psy3701 190 AYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEA 269 (342)
Q Consensus 190 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 269 (342)
+..+|++++|+..++++++++|.+ ..+++++|.++..+|++++|
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~------------------------------------~~a~~~~g~a~~~~g~~~~A 370 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSAN------------------------------------EKGLYRRGEAQLLMNEFESA 370 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC------------------------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCcc------------------------------------HHHHHHHHHHHHHccCHHHH
Confidence 777777777777777777777766 46777777777777777777
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHH
Q psy3701 270 LEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVN 305 (342)
Q Consensus 270 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 305 (342)
+..|+++++++|++..++..++.++...|++++|..
T Consensus 371 ~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 371 KGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777766653
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.73 E-value=3.6e-17 Score=123.38 Aligned_cols=123 Identities=12% Similarity=0.120 Sum_probs=58.3
Q ss_pred hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH-HhhhCCH--HHHHH
Q psy3701 91 IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE-CGLTNNA--RLASK 167 (342)
Q Consensus 91 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~-~~~~~~~--~~A~~ 167 (342)
.|++++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.+ +...|++ ++|+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 44445555555555555555555555555555555555555555555555444444444444444 4444444 44444
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 168 FFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
.+++++..+|+++.++..+|.++...|++++|+..++++++.+|.+
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 4444444444444444444444444444444444444444444443
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.72 E-value=1.4e-16 Score=112.91 Aligned_cols=66 Identities=8% Similarity=0.106 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
++..+|..+...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 344455555555555555555555555555555555555555555555555555555555555544
No 150
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.72 E-value=5.3e-15 Score=132.77 Aligned_cols=224 Identities=7% Similarity=0.005 Sum_probs=195.9
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHH-HHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc
Q psy3701 63 LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR-RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141 (342)
Q Consensus 63 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 141 (342)
...+|++++...|..+..|+..+......|+.++|. ..|++++...|.+...|..++......|++++|...|++++..
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456788888999999999999999999999999997 9999999999999999999999999999999999999999975
Q ss_pred C-----------CC-----------CchHHHHHHHHHhhhCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHhcC-hh
Q psy3701 142 F-----------KG-----------CHLPALYVGLECGLTNNARLASKFFDLALSI-AHEDPFVIHEMGVIAYQNHN-YT 197 (342)
Q Consensus 142 ~-----------~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-~~ 197 (342)
. |. ...+|...+....+.|+.+.|..+|.++++. .+....+|...+.+....++ ++
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e 487 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTK 487 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHH
Confidence 2 42 2346777888888899999999999999987 44567788888887777654 99
Q ss_pred HHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy3701 198 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 277 (342)
Q Consensus 198 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 277 (342)
.|..+|+++++..|++ ...|...+......|+.+.|...|++++
T Consensus 488 ~Ar~ife~~Lk~~p~~------------------------------------~~~w~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 488 TACKVLELGLKYFATD------------------------------------GEYINKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp HHHHHHHHHHHHHTTC------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCc------------------------------------hHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999988 4788888888889999999999999999
Q ss_pred hhCC---CchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHh
Q psy3701 278 VVAP---MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATT 322 (342)
Q Consensus 278 ~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 322 (342)
...| ....+|......-...|+.+.+....+++.+..|+++....
T Consensus 532 ~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 532 DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEE 579 (679)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHH
Confidence 9888 35578888888888999999999999999999999875433
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.72 E-value=9.8e-17 Score=113.75 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=92.6
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch-------
Q psy3701 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL------- 147 (342)
Q Consensus 75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------- 147 (342)
++.+.++..+|..++..|++++|+.+|+++++++|+++.++..+|.++..+|++++|+..++++++++|.+..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 3457788999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHH
Q psy3701 148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVI 183 (342)
Q Consensus 148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 183 (342)
++..+|.++...|++++|++.|++++...|+ +...
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 119 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV 119 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence 5666777888888888888888888887774 4443
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.71 E-value=4.7e-16 Score=111.13 Aligned_cols=123 Identities=11% Similarity=-0.061 Sum_probs=115.8
Q ss_pred cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701 107 LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM 186 (342)
Q Consensus 107 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 186 (342)
..|..+.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|+++.++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701 187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK 265 (342)
Q Consensus 187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (342)
|.++...|++++|+..++++++.+|.+ ..++..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~------------------------------------~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSC------------------------------------KEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGG------------------------------------THHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCc------------------------------------hHHHHHHHHHHHHhcC
Confidence 999999999999999999999999988 4788899998887764
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.71 E-value=5.2e-16 Score=111.65 Aligned_cols=121 Identities=16% Similarity=0.221 Sum_probs=104.1
Q ss_pred hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHH
Q psy3701 175 IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN 254 (342)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (342)
..|.++..+..+|.++...|++++|+..|++++..+|.+ ..++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------------------------------------~~~~~ 47 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------------------------------------AVYYT 47 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------------------------------------HHHHH
Confidence 456788889999999999999999999999999988887 57889
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC-----chhHHhHHHHHHH
Q psy3701 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD-----DSFATTMLSYVIE 329 (342)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~ 329 (342)
.+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+ +..+...+..+..
T Consensus 48 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 48 NRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888 6677777776665
Q ss_pred Hh
Q psy3701 330 QL 331 (342)
Q Consensus 330 ~~ 331 (342)
..
T Consensus 128 ~~ 129 (137)
T 3q49_B 128 KR 129 (137)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 154
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=1.3e-17 Score=139.72 Aligned_cols=228 Identities=11% Similarity=0.040 Sum_probs=106.9
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 110 (342)
+...+...+..+...|++++|+.+++.++ +. ..++.+...++.+|.+.|++.++.++++. |
T Consensus 60 D~~~y~~V~~~ae~~g~~EeAi~yl~~ar------------k~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p- 120 (449)
T 1b89_A 60 DPSSYMEVVQAANTSGNWEELVKYLQMAR------------KK-ARESYVETELIFALAKTNRLAELEEFING-----P- 120 (449)
T ss_dssp --------------------------------------------------------------CHHHHTTTTTC-----C-
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHH------------Hh-CccchhHHHHHHHHHHhCCHHHHHHHHcC-----C-
Confidence 44567778889999999999999888864 32 22356666777777777777777766642 3
Q ss_pred cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701 111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA 190 (342)
Q Consensus 111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 190 (342)
+..+|..+|..+...|++++|..+|.++ ..+..++.++.++|++++|++.++++ .++.+|...+.++
T Consensus 121 n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aC 187 (449)
T 1b89_A 121 NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFAC 187 (449)
T ss_dssp ----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHH
Confidence 2347777777777777777777777766 35666777777777777777777777 3677777777777
Q ss_pred HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHH
Q psy3701 191 YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEAL 270 (342)
Q Consensus 191 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 270 (342)
...|+++.|..+... +...|+. ...++..|.+.|++++|+
T Consensus 188 v~~~ef~lA~~~~l~-L~~~ad~---------------------------------------l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 188 VDGKEFRLAQMCGLH-IVVHADE---------------------------------------LEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHTTCHHHHHHTTTT-TTTCHHH---------------------------------------HHHHHHHHHHTTCHHHHH
T ss_pred HHcCcHHHHHHHHHH-HHhCHhh---------------------------------------HHHHHHHHHHCCCHHHHH
Confidence 777777777655554 2233333 224566667777777777
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHH--hCChHHHHHHHHHHHhccc-----CchhHHhHHHHHHHH
Q psy3701 271 EFHKQALVVAPMKASTFCCIGYIQAL--TGDLDSAVNYFHKTMALKR-----DDSFATTMLSYVIEQ 330 (342)
Q Consensus 271 ~~~~~al~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~ 330 (342)
.++++++.+++.+..++..+|.+|.+ .++..+.++.|...+.+.| ++...|..+..++.+
T Consensus 228 ~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 228 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777776666666666666653 4556666666666666666 566666666555544
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.70 E-value=3.1e-16 Score=111.64 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE 329 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 329 (342)
.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.+|+++++.+|+++.++..++.++.
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444444444444444444444444333
No 156
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.70 E-value=2.8e-17 Score=142.59 Aligned_cols=151 Identities=13% Similarity=-0.006 Sum_probs=134.7
Q ss_pred HhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC---------------chHHHHHHH
Q psy3701 90 LIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC---------------HLPALYVGL 154 (342)
Q Consensus 90 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~ 154 (342)
..+++++|+..|++++...|.....+..+|.++...|++++|+..|+++++++|.+ ..++..+|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888889999999999999999999999999999999999988 588899999
Q ss_pred HHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE 234 (342)
Q Consensus 155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (342)
++..+|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|.+
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~--------------------- 384 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN--------------------- 384 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------------
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------------
Confidence 99999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHH-HHHH
Q psy3701 235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEF-HKQA 276 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~a 276 (342)
..++..++.++...|++++|... ++++
T Consensus 385 ---------------~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 385 ---------------KAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999988743 3433
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.70 E-value=2.7e-16 Score=113.17 Aligned_cols=122 Identities=15% Similarity=0.080 Sum_probs=103.7
Q ss_pred hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHH
Q psy3701 72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY 151 (342)
Q Consensus 72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 151 (342)
..+|.++..++.+|.+++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..++++++.+|.++.++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHh
Q psy3701 152 VGLECGLTNNARLASKFFDLALSIAHE-----DPFVIHEMGVIAYQN 193 (342)
Q Consensus 152 l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~ 193 (342)
+|.++...|++++|+..|++++...|+ +..+...+..+....
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988887 566666666555443
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.70 E-value=1e-15 Score=107.97 Aligned_cols=121 Identities=23% Similarity=0.331 Sum_probs=113.2
Q ss_pred CCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701 74 YPDS-AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV 152 (342)
Q Consensus 74 ~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 152 (342)
+|.. ..+++.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4544 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc
Q psy3701 153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH 194 (342)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (342)
|.++...|++++|+..+++++..+|+++.++..+|.++...|
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999887654
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.70 E-value=2.7e-16 Score=110.43 Aligned_cols=102 Identities=14% Similarity=0.077 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH
Q psy3701 182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR 261 (342)
Q Consensus 182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (342)
.++.+|..+...|++++|+..|+++++.+|++ ..+|+.+|.++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------------------------------------~~a~~~lg~~~~ 62 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER------------------------------------EEAWRSLGLTQA 62 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------------------------------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------------------------------------HHHHHHHHHHHH
Confidence 46889999999999999999999999999998 689999999999
Q ss_pred HhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701 262 KLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF 319 (342)
Q Consensus 262 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 319 (342)
..|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++|++..
T Consensus 63 ~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 63 ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999999999999999999999999999998754
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.69 E-value=3.4e-16 Score=120.63 Aligned_cols=162 Identities=17% Similarity=0.097 Sum_probs=101.5
Q ss_pred HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc------CCCCchHHHHHHHHHhhhCCH
Q psy3701 89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL------FKGCHLPALYVGLECGLTNNA 162 (342)
Q Consensus 89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~~~~ 162 (342)
+..|++++|.+.++......+....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45677777777444443333355667777777777777777777777777763 233345566677777777777
Q ss_pred HHHHHHHHHHHhh---CCCC----hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701 163 RLASKFFDLALSI---AHED----PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED 235 (342)
Q Consensus 163 ~~A~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (342)
++|+..+++++.. .+++ ..++..+|.++...|++++|+..+++++...+...
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------- 141 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--------------------- 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc---------------------
Confidence 7777777777665 3322 34567777777778888888888877777655432
Q ss_pred HHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701 236 KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 280 (342)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 280 (342)
.......++..+|.++...|++++|+.++++++++.
T Consensus 142 ---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 142 ---------DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 000012345667777777777777777777776653
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.68 E-value=9.8e-16 Score=118.02 Aligned_cols=181 Identities=13% Similarity=0.100 Sum_probs=137.7
Q ss_pred HHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHhcC
Q psy3701 122 FAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSI------AHEDPFVIHEMGVIAYQNHN 195 (342)
Q Consensus 122 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~ 195 (342)
....|++++|.+.++......+....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356899999999665555533356778889999999999999999999999983 34456789999999999999
Q ss_pred hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCC-CChHHHHHHHHHHHHhhhHHHHHHHHH
Q psy3701 196 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIAD-KWEPLLNNLGHVNRKLKKYEEALEFHK 274 (342)
Q Consensus 196 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 274 (342)
+++|+..++++++..+..+ ..+ ....++.++|.++...|++++|+.+++
T Consensus 82 ~~~A~~~~~~al~~~~~~~------------------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLP------------------------------EDPLAASANAYEVATVALHFGDLAGARQEYE 131 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSC------------------------------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC------------------------------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999855432 000 124688999999999999999999999
Q ss_pred HHHhhCCC--c----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701 275 QALVVAPM--K----ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE 333 (342)
Q Consensus 275 ~al~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 333 (342)
+++...+. + ..++..+|.++...|++++|+.++++++++....... ...+.++..+..
T Consensus 132 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~ 195 (203)
T 3gw4_A 132 KSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDS-EAVNELMTRLNG 195 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHhcccc
Confidence 99976422 2 2456899999999999999999999999886544322 233444444433
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.68 E-value=2.7e-15 Score=104.63 Aligned_cols=113 Identities=15% Similarity=0.117 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV 259 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (342)
+..+..+|.++...|++++|+..+++++...|.+ ..++..+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~~a~~ 47 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------------------------------------HVLYSNRSAA 47 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------------------------------------HHHHHHHHHH
Confidence 4567778888888888888888888888887776 4778888888
Q ss_pred HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701 260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI 328 (342)
Q Consensus 260 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 328 (342)
+...|++++|+..++++++..|+++.++..+|.++...|++++|+..++++++.+|+++.++..++.+.
T Consensus 48 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 48 YAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 888888888888888888888888888888888888888888888888888888888888877777664
No 163
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.68 E-value=3.2e-15 Score=105.34 Aligned_cols=115 Identities=24% Similarity=0.372 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV 259 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (342)
...+..+|.++...|++++|+..+++++...|.+ ..++..+|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~la~~ 52 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------------------------------------AEAWYNLGNA 52 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc------------------------------------HHHHHHHHHH
Confidence 4566667777777777777777777777666655 3566677777
Q ss_pred HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 260 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
+...|++++|+..++++++..|.++.++..+|.++...|++++|+.+++++++.+|+++.++..++.++..
T Consensus 53 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 53 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777666666543
No 164
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.68 E-value=2.8e-16 Score=110.31 Aligned_cols=101 Identities=14% Similarity=-0.046 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh
Q psy3701 80 AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT 159 (342)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 159 (342)
.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35666666666666777777676666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhhCCCCh
Q psy3701 160 NNARLASKFFDLALSIAHEDP 180 (342)
Q Consensus 160 ~~~~~A~~~~~~~~~~~~~~~ 180 (342)
|++++|+..++++++.+|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 666666666666666666543
No 165
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.68 E-value=3.3e-16 Score=112.58 Aligned_cols=115 Identities=11% Similarity=0.001 Sum_probs=96.7
Q ss_pred hhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------cH-----HHHHHHHHHHHHhCC
Q psy3701 26 LQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD-------SA-----IAWYAVGCYYYLIGR 93 (342)
Q Consensus 26 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~-------~~-----~~~~~l~~~~~~~~~ 93 (342)
..+...+..+..+|..+...|+|++|+..|+++ +..+|+ +. .+|.++|.++..+|+
T Consensus 5 ~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kA------------L~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr 72 (159)
T 2hr2_A 5 LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRA------------MEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS 72 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------------HHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC
Confidence 334446677788999999999999999999997 477777 33 389999999999999
Q ss_pred hHHHHHHHHHHhhc-------CCCcHHHH----HHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701 94 SDPARRFLGKATSL-------DKLFLPAW----LMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV 152 (342)
Q Consensus 94 ~~~A~~~~~~a~~~-------~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 152 (342)
+++|+.+|++++++ +|++..+| +++|.++..+|++++|+..|+++++++|++......+
T Consensus 73 ~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 73 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999998 99888888 8999999999999999999999998888876554443
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.68 E-value=2.1e-15 Score=105.22 Aligned_cols=114 Identities=12% Similarity=0.056 Sum_probs=108.7
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC 156 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 156 (342)
.+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701 157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA 190 (342)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 190 (342)
...|++++|+..++++++.+|+++.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999998888764
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.68 E-value=4.7e-16 Score=115.42 Aligned_cols=122 Identities=11% Similarity=0.016 Sum_probs=110.2
Q ss_pred CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc------------------CCCcHHHHHHhhhHHHhhccHHHHHHHHHH
Q psy3701 76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSL------------------DKLFLPAWLMYGHSFAVENEHDQAMAAYFN 137 (342)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 137 (342)
..+..+..+|..++..|++++|+..|++++.. +|.+..++.++|.++...|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 35778999999999999999999999999998 677778999999999999999999999999
Q ss_pred HhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHhcChh
Q psy3701 138 AFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP-FVIHEMGVIAYQNHNYT 197 (342)
Q Consensus 138 al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 197 (342)
+++++|.++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....++..
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 66777777766554443
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.4e-15 Score=108.74 Aligned_cols=119 Identities=12% Similarity=-0.077 Sum_probs=111.7
Q ss_pred cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHH
Q psy3701 73 LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPA 149 (342)
Q Consensus 73 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 149 (342)
.+|.+...++.+|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|.+..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457789999999999999999999999999999999987 88999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701 150 LYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY 191 (342)
Q Consensus 150 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (342)
+.+|.++...|++++|+..+++++..+|++..++..++.+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999999999999999999999999999999888877653
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.65 E-value=8.4e-17 Score=140.13 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=94.0
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHH
Q psy3701 148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN 227 (342)
Q Consensus 148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 227 (342)
++..+|..+...|++++|++.|+++++.+|++..++..+|.++..+|++++|+..++++++++|.+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------------- 73 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-------------- 73 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC--------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--------------
Confidence 445566666777777777777777777777777777777777777777777777777777777766
Q ss_pred HhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHH--HHHhCChHHHHH
Q psy3701 228 NLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI--QALTGDLDSAVN 305 (342)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~--~~~~g~~~~A~~ 305 (342)
..++.++|.++..+|++++|+..|+++++.+|++..++..++.+ +...|++++|++
T Consensus 74 ----------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 74 ----------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp ----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777777777777777777777777777777777777777776 667777777777
Q ss_pred HHH-----------HHHhcccCc
Q psy3701 306 YFH-----------KTMALKRDD 317 (342)
Q Consensus 306 ~~~-----------~al~~~p~~ 317 (342)
.++ +++++.|+.
T Consensus 132 ~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 132 GDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp ----CCSTTTCCTTSSCCCCTTC
T ss_pred cccccchhHhhhhhhhccccccc
Confidence 777 666666654
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.65 E-value=3.2e-17 Score=142.73 Aligned_cols=139 Identities=11% Similarity=-0.014 Sum_probs=125.7
Q ss_pred CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701 76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE 155 (342)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 155 (342)
..+..+..+|..+...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++++|.+..++..+|.+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH--HHHhcChhHHHHHHH-----------HHHHhhhhcC
Q psy3701 156 CGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI--AYQNHNYTVAENCFM-----------EALSKVKQLG 214 (342)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~-----------~al~~~~~~~ 214 (342)
+..+|++++|++.++++++.+|++..++..++.+ +...|++++|+..++ +++.+.|...
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 9999999999999999999999999999999998 889999999999999 7777777664
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.9e-15 Score=128.61 Aligned_cols=207 Identities=11% Similarity=0.024 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH-----------------HHHHHhhhHHHhhccHHHHHHHHHHHhc
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL-----------------PAWLMYGHSFAVENEHDQAMAAYFNAFN 140 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 140 (342)
|.+....|..+...|++++|++.|.++++..|... .++..+|.+|...|++++|++.+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566678888899999999999999998877642 3578899999999999999999999988
Q ss_pred cCCCCch------HHHHHHHHHhhhCCHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q psy3701 141 LFKGCHL------PALYVGLECGLTNNARLASKFFDLALSIAH------EDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208 (342)
Q Consensus 141 ~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 208 (342)
..+.... +...++.++...|++++|+..+++++...+ ....++..+|.++...|+|++|+..+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 7665433 334577888888999999999999887543 2356788999999999999999999999988
Q ss_pred hhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC---Cc--
Q psy3701 209 KVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP---MK-- 283 (342)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~-- 283 (342)
...... ..+....++..+|.+|...|++++|...+++++...+ ..
T Consensus 164 ~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 213 (434)
T 4b4t_Q 164 EFKKLD------------------------------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ 213 (434)
T ss_dssp HHTTSS------------------------------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHhcc------------------------------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence 765542 2333467899999999999999999999999987643 22
Q ss_pred --hHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701 284 --ASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 284 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 314 (342)
...+..+|.++...|++++|..+|.++++..
T Consensus 214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 3567788999999999999999999998753
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.9e-15 Score=107.11 Aligned_cols=121 Identities=16% Similarity=0.115 Sum_probs=99.1
Q ss_pred hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHH
Q psy3701 175 IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN 254 (342)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (342)
..|.+...+..+|..+...|++++|+..|+++++..|.+. ....++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------------------------~~~~~~~ 69 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ---------------------------------DQAVLHR 69 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH---------------------------------HHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch---------------------------------HHHHHHH
Confidence 3466777888888888888888888888888888777641 0036788
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI 328 (342)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 328 (342)
.+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++..++..+..+.
T Consensus 70 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 70 NRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 88888888888999998888888888888888888898888899999999999999888888888887777664
No 173
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.63 E-value=3.5e-15 Score=107.04 Aligned_cols=91 Identities=14% Similarity=0.078 Sum_probs=75.1
Q ss_pred hhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcCh----------hHHHHHHHHHHHhhhhcCccccccchhhHHH
Q psy3701 158 LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY----------TVAENCFMEALSKVKQLGGEIIADKWEPLLN 227 (342)
Q Consensus 158 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 227 (342)
+.+.+++|++.++++++++|+++.+|+++|.++...+++ ++|+..|+++++++|+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-------------- 79 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-------------- 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC--------------
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc--------------
Confidence 456677777777777778888888888788877777665 59999999999999999
Q ss_pred HhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHhhCCCch
Q psy3701 228 NLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK-----------KYEEALEFHKQALVVAPMKA 284 (342)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~~~~~ 284 (342)
..+|+++|.+|..+| ++++|+.+|+++++++|++.
T Consensus 80 ----------------------~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 80 ----------------------DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ----------------------HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 689999999999885 78888888888888888764
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.63 E-value=1.9e-15 Score=104.38 Aligned_cols=106 Identities=17% Similarity=0.143 Sum_probs=71.9
Q ss_pred CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHH
Q psy3701 176 AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNN 255 (342)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (342)
+|+++.++..+|.++...|++++|+..++++++..|.+ ..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------------------~~~~~~ 45 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------------------------------------SKYWLM 45 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------------------------------------HHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------------------------------------HHHHHH
Confidence 45556666666666666666666666666666666655 356666
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHh-CChHHHHHHHHHHHhcccCc
Q psy3701 256 LGHVNRKLKKYEEALEFHKQALVVAPM--KASTFCCIGYIQALT-GDLDSAVNYFHKTMALKRDD 317 (342)
Q Consensus 256 l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~ 317 (342)
+|.++...|++++|+..++++++..|. +..++..+|.++... |++++|++++++++...|++
T Consensus 46 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 46 KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 677777777777777777777776666 666677777777777 77777777777777766654
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.63 E-value=6.1e-15 Score=104.80 Aligned_cols=116 Identities=13% Similarity=-0.005 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH---HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC---chHHHHH
Q psy3701 79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL---PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC---HLPALYV 152 (342)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l 152 (342)
.+++.+|.+++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++...|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999888 799999999999999999999999999999998 7779999
Q ss_pred HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc
Q psy3701 153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH 194 (342)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (342)
|.++...|++++|+..+++++...|+++.+......+....+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999998887766655544433
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.63 E-value=2.5e-16 Score=131.13 Aligned_cols=141 Identities=13% Similarity=0.017 Sum_probs=95.8
Q ss_pred CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH-----------------HHHHHhhhHHHhhccHHHHHHHHH
Q psy3701 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL-----------------PAWLMYGHSFAVENEHDQAMAAYF 136 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~ 136 (342)
.+..+..+..+|..++..|++++|+..|++++...|.+. .++.++|.++...|++++|+..++
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345678899999999999999999999999999999876 489999999999999999999999
Q ss_pred HHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HHhcChhHHHHHHHHHHHhhhhcC
Q psy3701 137 NAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA-YQNHNYTVAENCFMEALSKVKQLG 214 (342)
Q Consensus 137 ~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~ 214 (342)
++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.+. ...+..+++...|.+++...|.++
T Consensus 255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999884 456778889999999999998874
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.63 E-value=4.3e-15 Score=105.64 Aligned_cols=120 Identities=13% Similarity=0.051 Sum_probs=109.3
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC-------ch
Q psy3701 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC-------HL 147 (342)
Q Consensus 75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~ 147 (342)
|..+..++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++...|.+ ..
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999998876 77
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC
Q psy3701 148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN 195 (342)
Q Consensus 148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (342)
++..+|.++...|++++|+..+++++...| ++..+..++.+....++
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999998 68888888877766543
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.63 E-value=7.9e-15 Score=104.26 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV 259 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (342)
+..+..+|.++...|++++|+..+++++...|.+ ..++..+|.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------------------~~~~~~la~~ 47 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------------------------------------MTYITNQAAV 47 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------------------------------------HHHHHHHHHH
Confidence 3445566666666666666666666666665555 3556666666
Q ss_pred HHHhhhHHHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701 260 NRKLKKYEEALEFHKQALVVAPMK-------ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI 332 (342)
Q Consensus 260 ~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 332 (342)
+...|++++|+.++++++...|.+ ..++..+|.++...|++++|+.+|+++++..| ++.....++.+...+.
T Consensus 48 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 48 YFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 666666666666666666665544 56666777777777777777777777777766 4666666666655544
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.63 E-value=1.6e-14 Score=102.55 Aligned_cols=114 Identities=15% Similarity=0.067 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH
Q psy3701 182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR 261 (342)
Q Consensus 182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (342)
.++.+|.++...|++++|+..|+++++..|.++ ....+++.+|.++.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---------------------------------~~~~~~~~lg~~~~ 50 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV---------------------------------YTPNALYWLGESYY 50 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST---------------------------------THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc---------------------------------ccHHHHHHHHHHHH
Confidence 467899999999999999999999999998873 11268999999999
Q ss_pred HhhhHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701 262 KLKKYEEALEFHKQALVVAPMK---ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI 328 (342)
Q Consensus 262 ~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 328 (342)
..|++++|+..|+++++..|++ +.+++.+|.++...|++++|+..|+++++..|+++.+......+-
T Consensus 51 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 51 ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 9999999999999999999999 888999999999999999999999999999999998777665544
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.63 E-value=2e-15 Score=104.30 Aligned_cols=106 Identities=17% Similarity=0.106 Sum_probs=64.3
Q ss_pred CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC--CchHHHH
Q psy3701 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG--CHLPALY 151 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~ 151 (342)
+|+++.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..++++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 45555556666666666666666666666666666666666666666666666666666666666666665 5555555
Q ss_pred HHHHHhhh-CCHHHHHHHHHHHHhhCCCC
Q psy3701 152 VGLECGLT-NNARLASKFFDLALSIAHED 179 (342)
Q Consensus 152 l~~~~~~~-~~~~~A~~~~~~~~~~~~~~ 179 (342)
+|.++... |++++|++.+++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 66666666 66666666666655555543
No 181
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.62 E-value=3.2e-15 Score=107.18 Aligned_cols=101 Identities=18% Similarity=0.243 Sum_probs=92.0
Q ss_pred HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH----
Q psy3701 191 YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY---- 266 (342)
Q Consensus 191 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---- 266 (342)
.+.+.+++|+..++++++++|.+ +.+|+++|.++...+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~------------------------------------aea~~n~G~~l~~l~~~~~g~ 56 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLD------------------------------------ADNLTRWGGVLLELSQFHSIS 56 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCC------------------------------------HHHHHHHHHHHHHhcccchhh
Confidence 35678999999999999999999 69999999999999875
Q ss_pred ------HHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC-----------ChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701 267 ------EEALEFHKQALVVAPMKASTFCCIGYIQALTG-----------DLDSAVNYFHKTMALKRDDSFATTMLSYV 327 (342)
Q Consensus 267 ------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 327 (342)
++|+..|+++++++|++..+|+++|.+|..+| ++++|+.+|+++++++|++...+..+..+
T Consensus 57 ~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 57 DAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 59999999999999999999999999999885 89999999999999999998777766544
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.61 E-value=1.1e-15 Score=127.26 Aligned_cols=159 Identities=13% Similarity=0.027 Sum_probs=93.9
Q ss_pred CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701 108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG 187 (342)
Q Consensus 108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 187 (342)
.+.....+..+|..+...|++++|+..|++++...|.+. .+...+++.++...+. ..++.++|
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~nla 237 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHHHH
Confidence 344566778888888888888888888888888777633 1233444455443332 24789999
Q ss_pred HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 267 (342)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (342)
.++..+|++++|+..++++++++|.+ ..+++++|.++..+|+++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------~~a~~~lg~a~~~~g~~~ 281 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKN------------------------------------PKALFRRGKAKAELGQMD 281 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999988 589999999999999999
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHH-HHHhCChHHHHHHHHHHHhcccCchh
Q psy3701 268 EALEFHKQALVVAPMKASTFCCIGYI-QALTGDLDSAVNYFHKTMALKRDDSF 319 (342)
Q Consensus 268 ~A~~~~~~al~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~ 319 (342)
+|+..|+++++++|++..++..++.+ ....+..+.+...|.+++...|+++.
T Consensus 282 ~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 282 SARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp HHHHHHHHTTC------------------------------------------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 99999999999999999999999988 44567788899999999999998764
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.60 E-value=1.3e-14 Score=122.06 Aligned_cols=126 Identities=13% Similarity=0.022 Sum_probs=118.9
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhh----------------cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhc
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATS----------------LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFN 140 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 140 (342)
.+..+..+|..++..|++++|+..|+++++ .+|.+..++.++|.++...|++++|+..++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 356789999999999999999999999998 7788889999999999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHH
Q psy3701 141 LFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENC 202 (342)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 202 (342)
++|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++++++...
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988887653
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.60 E-value=3e-15 Score=104.53 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=86.6
Q ss_pred HhCChHHHHHHHHHHhhc---CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHH
Q psy3701 90 LIGRSDPARRFLGKATSL---DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLAS 166 (342)
Q Consensus 90 ~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 166 (342)
..|++++|+.+|+++++. +|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468899999999999999 68888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHH
Q psy3701 167 KFFDLALSIAHEDPFVIHEMGVIAYQ 192 (342)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (342)
..+++++...|+++.+......+...
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999988765444433333
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.59 E-value=1.3e-14 Score=101.33 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=87.6
Q ss_pred HhcChhHHHHHHHHHHHh---hhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHH
Q psy3701 192 QNHNYTVAENCFMEALSK---VKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEE 268 (342)
Q Consensus 192 ~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 268 (342)
..|++++|+..|+++++. +|.+ ..++..+|.++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~------------------------------------~~~~~~lg~~~~~~~~~~~ 45 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDL------------------------------------AECYLGLGSTFRTLGEYRK 45 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHH------------------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccH------------------------------------HHHHHHHHHHHHHcCCHHH
Confidence 468999999999999999 6777 5899999999999999999
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701 269 ALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS 325 (342)
Q Consensus 269 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 325 (342)
|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|+++.......
T Consensus 46 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 46 AEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998765543
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.58 E-value=1.7e-14 Score=106.62 Aligned_cols=139 Identities=21% Similarity=0.236 Sum_probs=105.6
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccc
Q psy3701 148 PALYVGLECGLTNNARLASKFFDLALSIAHED------PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK 221 (342)
Q Consensus 148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 221 (342)
++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+..+++++...+...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------- 83 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK------- 83 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-------
Confidence 34455555555666666666666655544321 24788899999999999999999999999877652
Q ss_pred hhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC------CchHHHHHHHHHHH
Q psy3701 222 WEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP------MKASTFCCIGYIQA 295 (342)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~ 295 (342)
..+....++..+|.++...|++++|+..++++++..+ ....++..+|.++.
T Consensus 84 -----------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 84 -----------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----------------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 1111246888999999999999999999999997642 22467889999999
Q ss_pred HhCChHHHHHHHHHHHhcccC
Q psy3701 296 LTGDLDSAVNYFHKTMALKRD 316 (342)
Q Consensus 296 ~~g~~~~A~~~~~~al~~~p~ 316 (342)
..|++++|+.++++++++...
T Consensus 141 ~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHTCHHHHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.58 E-value=1.3e-14 Score=107.25 Aligned_cols=148 Identities=17% Similarity=0.139 Sum_probs=97.8
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH------HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL------PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPAL 150 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 150 (342)
...++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+..+++++...+.....
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-- 85 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR-- 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc--
Confidence 355677777777777777777777777776654321 245555555555555555555555555433221000
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701 151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG 230 (342)
Q Consensus 151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 230 (342)
+....++..+|.++...|++++|+..++++++..+...
T Consensus 86 --------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------- 123 (164)
T 3ro3_A 86 --------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK---------------- 123 (164)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------------
T ss_pred --------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc----------------
Confidence 00145677888999999999999999999888765542
Q ss_pred hhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Q psy3701 231 HKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 282 (342)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 282 (342)
..+....++..+|.++...|++++|+.++++++++...
T Consensus 124 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 124 --------------DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred --------------chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 11112467888999999999999999999998876543
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.58 E-value=6.4e-14 Score=117.83 Aligned_cols=134 Identities=14% Similarity=0.171 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV 259 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (342)
...+..+|..+...|++++|+..|+++++..+..+... ... ......+....++.++|.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~--------------~~~------~~~~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAA--------------EDA------DGAKLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS--------------CHH------HHGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCcccc--------------ChH------HHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999998554431000 000 0000111225799999999
Q ss_pred HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701 260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE 333 (342)
Q Consensus 260 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 333 (342)
+..+|++++|+.+++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++....+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876654
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2e-13 Score=117.85 Aligned_cols=177 Identities=9% Similarity=-0.014 Sum_probs=148.2
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch-----------------HHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701 112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL-----------------PALYVGLECGLTNNARLASKFFDLALS 174 (342)
Q Consensus 112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~~~~ 174 (342)
|.+....|..+...|++++|++.|.++++..|.... ++..+|.+|...|++++|.+.+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445667788899999999999999999999887432 467799999999999999999999988
Q ss_pred hCCCCh------HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCC
Q psy3701 175 IAHEDP------FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADK 248 (342)
Q Consensus 175 ~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
..+... .+...+|.++...|++++|+..+++++...+... ....
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------------~~~~ 133 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK------------------------------RVFL 133 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS------------------------------CCSS
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC------------------------------ccHH
Confidence 765533 3456778888889999999999999999887663 2333
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC------CCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 249 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
...++..+|.++...|+|++|+..+++++... +....++..+|.+|...|++++|...+++++...+..+
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 209 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY 209 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence 46789999999999999999999999998752 33457899999999999999999999999998765443
No 190
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.55 E-value=5.8e-13 Score=119.62 Aligned_cols=187 Identities=7% Similarity=-0.030 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHH-HHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHH
Q psy3701 95 DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAM-AAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLAL 173 (342)
Q Consensus 95 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 173 (342)
+.....|++++...|.++..|+..+......|+.++|. ..|++++...|.+...+...+......|++++|..+|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999997 99999999999988888899999999999999999999999
Q ss_pred hhC-----------CC-----------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhh
Q psy3701 174 SIA-----------HE-----------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH 231 (342)
Q Consensus 174 ~~~-----------~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 231 (342)
... |. ...+|...+.+..+.|..+.|...|.++++..|...
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~----------------- 468 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT----------------- 468 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----------------
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----------------
Confidence 752 43 345788999999999999999999999998733332
Q ss_pred hHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701 232 KAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT 310 (342)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 310 (342)
..+|...+.+....++ .+.|...|+++++..|+++..|...+......|+.+.|+..|+++
T Consensus 469 ------------------~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 469 ------------------PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp ------------------THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ------------------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3577777777666654 899999999999999999999999999999999999999999999
Q ss_pred HhcccC
Q psy3701 311 MALKRD 316 (342)
Q Consensus 311 l~~~p~ 316 (342)
+...|+
T Consensus 531 l~~~~~ 536 (679)
T 4e6h_A 531 IDKISD 536 (679)
T ss_dssp TTTSSS
T ss_pred HHhcCC
Confidence 999884
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.44 E-value=1.7e-12 Score=90.08 Aligned_cols=101 Identities=16% Similarity=0.173 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy3701 197 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA 276 (342)
Q Consensus 197 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 276 (342)
++|+..|+++++.+|.+ ..+++.+|.++...|++++|+..|+++
T Consensus 2 ~~a~~~~~~al~~~p~~------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~a 45 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN------------------------------------MLLRFTLGKTYAEHEQFDAALPHLRAA 45 (115)
T ss_dssp CCHHHHHHHHHTTTCCC------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCc------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 46888999999999888 589999999999999999999999999
Q ss_pred HhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc--hhHHhHHHHHHHHhhh
Q psy3701 277 LVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD--SFATTMLSYVIEQLIE 333 (342)
Q Consensus 277 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~ 333 (342)
++.+|++..++..+|.++...|++++|+..|++++++.|++ ......+...+..+..
T Consensus 46 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 46 LDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998854 4555566666665544
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.41 E-value=1.2e-13 Score=95.12 Aligned_cols=92 Identities=9% Similarity=-0.040 Sum_probs=62.9
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC------chHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC------HLPAL 150 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~ 150 (342)
++.++..+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 356677777777777777777777777777777777777777777777777777777777777777766 44555
Q ss_pred HHHHHHhhhCCHHHHHHH
Q psy3701 151 YVGLECGLTNNARLASKF 168 (342)
Q Consensus 151 ~l~~~~~~~~~~~~A~~~ 168 (342)
.+|.++...|+++.|+..
T Consensus 83 ~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHhHhhhHhH
Confidence 555555555555544443
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.40 E-value=1.3e-11 Score=85.53 Aligned_cols=84 Identities=10% Similarity=-0.011 Sum_probs=61.9
Q ss_pred HHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701 130 QAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSK 209 (342)
Q Consensus 130 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 209 (342)
+|+..|+++++.+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhhc
Q psy3701 210 VKQL 213 (342)
Q Consensus 210 ~~~~ 213 (342)
.|..
T Consensus 83 ~~~~ 86 (115)
T 2kat_A 83 AQSR 86 (115)
T ss_dssp HHHH
T ss_pred cccc
Confidence 7755
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.39 E-value=2.7e-13 Score=93.37 Aligned_cols=82 Identities=13% Similarity=0.102 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc------hhHHhHH
Q psy3701 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD------SFATTML 324 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l 324 (342)
..+..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..|+++++++|++ ..++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555555555555555555555555555 4455555
Q ss_pred HHHHHHhh
Q psy3701 325 SYVIEQLI 332 (342)
Q Consensus 325 ~~~~~~~~ 332 (342)
+.++...+
T Consensus 85 ~~~~~~~~ 92 (111)
T 2l6j_A 85 ELAQGAVG 92 (111)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 195
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.38 E-value=1e-09 Score=95.70 Aligned_cols=260 Identities=8% Similarity=-0.094 Sum_probs=165.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC-hHHHHHHHHHHhhc---CCCcHHHHHHhhhH
Q psy3701 46 ENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR-SDPARRFLGKATSL---DKLFLPAWLMYGHS 121 (342)
Q Consensus 46 ~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~---~~~~~~~~~~la~~ 121 (342)
|+++.+..+|+++ +...| +.+.|..........++ .+.....|+.++.. +|.+...|......
T Consensus 28 ~~~e~~~~ifera------------l~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 28 KDYRSLESLFGRC------------LKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp TCHHHHHHHHHHH------------STTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH------------hccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 6677777777775 46666 66777777766666653 34566677777653 56667777776665
Q ss_pred HH----hhccHHHHHHHHHHHhccCCCCc-hHH-----------------------------------------------
Q psy3701 122 FA----VENEHDQAMAAYFNAFNLFKGCH-LPA----------------------------------------------- 149 (342)
Q Consensus 122 ~~----~~g~~~~A~~~~~~al~~~~~~~-~~~----------------------------------------------- 149 (342)
+. ..|+.+.+...|++++.. |... ..+
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~ 173 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK 173 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHH
Confidence 43 356777788888888774 3321 110
Q ss_pred HHHHHHHhhhCC---------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701 150 LYVGLECGLTNN---------ARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD 220 (342)
Q Consensus 150 ~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 220 (342)
.....+-...++ .+.....|++++...|..+.+|...+..+...|+.++|...|++++.. |.+. .
T Consensus 174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-----~ 247 (493)
T 2uy1_A 174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-----F 247 (493)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-----H
T ss_pred HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-----H
Confidence 000111111121 334677999999999999999999999999999999999999999999 8763 1
Q ss_pred chhhHHH--HhhhhHHHHHHHhchh-------ccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3701 221 KWEPLLN--NLGHKAEDKVKQLGGE-------IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIG 291 (342)
Q Consensus 221 ~~~~~~~--~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 291 (342)
.|..... .+..........+... ........+|...+....+.++.+.|...|+++ ...+....+|...+
T Consensus 248 l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A 326 (493)
T 2uy1_A 248 LSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCA 326 (493)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHH
Confidence 2221111 1111111111111000 001112357778888888888899999999999 43333456676667
Q ss_pred HHHHHhC-ChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701 292 YIQALTG-DLDSAVNYFHKTMALKRDDSFATTMLSY 326 (342)
Q Consensus 292 ~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~ 326 (342)
.+....+ +.+.|...|+.+++..|+.+..+.....
T Consensus 327 ~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid 362 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 6666666 6999999999999988888765544433
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.38 E-value=6.2e-12 Score=83.02 Aligned_cols=82 Identities=27% Similarity=0.439 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE 329 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 329 (342)
...+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred Hh
Q psy3701 330 QL 331 (342)
Q Consensus 330 ~~ 331 (342)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.37 E-value=4.7e-12 Score=83.64 Aligned_cols=84 Identities=29% Similarity=0.398 Sum_probs=59.5
Q ss_pred CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701 76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE 155 (342)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 155 (342)
.++.+++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777666666666666
Q ss_pred Hhhh
Q psy3701 156 CGLT 159 (342)
Q Consensus 156 ~~~~ 159 (342)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.30 E-value=3.7e-11 Score=80.87 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=75.5
Q ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch--hHHhHH
Q psy3701 247 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS--FATTML 324 (342)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l 324 (342)
|..+.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++++.|++. .....+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 445789999999999999999999999999999999999999999999999999999999999999987544 455556
Q ss_pred HHHHHHhhh
Q psy3701 325 SYVIEQLIE 333 (342)
Q Consensus 325 ~~~~~~~~~ 333 (342)
..++.....
T Consensus 84 ~~~l~~~~~ 92 (100)
T 3ma5_A 84 QDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHccc
Confidence 666665543
No 199
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.28 E-value=1e-11 Score=83.50 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=52.5
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChH-HHHHHHHHHHHh
Q psy3701 185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP-LLNNLGHVNRKL 263 (342)
Q Consensus 185 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 263 (342)
..|.++...|++++|+..|+++++.+|.+ .. ++..+|.++...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~------------------------------------~~~~~~~lg~~~~~~ 48 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVG------------------------------------KDEAYYLMGNAYRKL 48 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSST------------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCc------------------------------------HHHHHHHHHHHHHHc
Confidence 45555666666666666666666665555 34 566666666666
Q ss_pred hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 264 KKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 264 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
|++++|+..|+++++.+|++..++.. +.+.+++..|+++...+|+++
T Consensus 49 ~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 49 GDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 66666666666666666665555432 344555555655555555543
No 200
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.27 E-value=9.3e-12 Score=83.70 Aligned_cols=89 Identities=12% Similarity=0.070 Sum_probs=52.9
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCCcHH-HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC
Q psy3701 82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLP-AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN 160 (342)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 160 (342)
+..|..+...|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++.+|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 34566666666666666666666666666666 66666666666666666666666666666665554422 3
Q ss_pred CHHHHHHHHHHHHhhCCC
Q psy3701 161 NARLASKFFDLALSIAHE 178 (342)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~ 178 (342)
.+.+++..|+++...+|+
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 444455555544444443
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.27 E-value=1.5e-10 Score=82.86 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH----hCChHHHHHHHHHHHhc
Q psy3701 251 PLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL----TGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 251 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~ 313 (342)
.+++++|.+|.. .+++++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+.
T Consensus 58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 345555555554 45555555555555443 344555555555555 55555555555555554
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.26 E-value=7.5e-11 Score=79.34 Aligned_cols=72 Identities=10% Similarity=0.004 Sum_probs=51.9
Q ss_pred CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 142 FKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 466666777777777777777777777777777777777777777777777777777777777777776655
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.23 E-value=4.3e-10 Score=80.43 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=85.8
Q ss_pred hccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----hcChhHHH
Q psy3701 125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ----NHNYTVAE 200 (342)
Q Consensus 125 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 200 (342)
.+++++|+.+|+++.+..+ +.+. +|.+|...+..++|+++|+++.+. .++.+++.+|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3467777777777777653 3343 777777777777788888877765 577788888888877 77888888
Q ss_pred HHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH----hhhHHHHHHHHHHH
Q psy3701 201 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQA 276 (342)
Q Consensus 201 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a 276 (342)
.+|+++.+. .+ +.+++++|.+|.. .+++++|+.+|+++
T Consensus 82 ~~~~~Aa~~--g~------------------------------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 82 QYYSKACGL--ND------------------------------------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHHHT--TC------------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHcC--CC------------------------------------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 888888765 22 4677888888887 77888888888888
Q ss_pred HhhCCCchHHHHHH
Q psy3701 277 LVVAPMKASTFCCI 290 (342)
Q Consensus 277 l~~~~~~~~~~~~l 290 (342)
.+.. ++.+...+
T Consensus 124 a~~g--~~~A~~~l 135 (138)
T 1klx_A 124 CRLG--SEDACGIL 135 (138)
T ss_dssp HHTT--CHHHHHHC
T ss_pred HHCC--CHHHHHHH
Confidence 7763 34444443
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.22 E-value=3.9e-10 Score=92.23 Aligned_cols=142 Identities=10% Similarity=0.056 Sum_probs=111.4
Q ss_pred hcCCCcHHHH--HHHHHHHHHhCC---hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccH-------HHHH-HHHH--
Q psy3701 72 DLYPDSAIAW--YAVGCYYYLIGR---SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH-------DQAM-AAYF-- 136 (342)
Q Consensus 72 ~~~p~~~~~~--~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-------~~A~-~~~~-- 136 (342)
...|.++.+| +..|..+...++ ..+|+.+|+++++++|+++.++..++.++...... ..++ ..++
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3356655444 556777776654 58999999999999999999999888877532211 1111 1222
Q ss_pred HHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701 137 NAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214 (342)
Q Consensus 137 ~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 214 (342)
.++..+|.++.++..++..+...|++++|+..+++++.++| +...+..+|.++...|++++|++.|++++.++|..+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 23456788888888899999999999999999999999997 477888999999999999999999999999999873
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.22 E-value=6.2e-11 Score=102.63 Aligned_cols=134 Identities=10% Similarity=-0.051 Sum_probs=110.1
Q ss_pred HHHHhhhCCHHHHHHHHHHHHhh-----CCCCh---HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhh
Q psy3701 153 GLECGLTNNARLASKFFDLALSI-----AHEDP---FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEP 224 (342)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 224 (342)
+..+..+|++++|+..+++++.+ .|+++ .++.++|.+|..+|+|++|+.++++++.+....-
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l---------- 385 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY---------- 385 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS----------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc----------
Confidence 33466889999999999999975 35554 4688999999999999999999999998764431
Q ss_pred HHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCch---HHHHHHHHHHHH
Q psy3701 225 LLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMKA---STFCCIGYIQAL 296 (342)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~---~~~~~l~~~~~~ 296 (342)
....|..+..+.++|.+|..+|++++|+.+|++++++ .|+++ .....++.++..
T Consensus 386 ------------------G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 447 (490)
T 3n71_A 386 ------------------HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME 447 (490)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 1123444678999999999999999999999999975 46655 556789999999
Q ss_pred hCChHHHHHHHHHHHhcc
Q psy3701 297 TGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 297 ~g~~~~A~~~~~~al~~~ 314 (342)
++.+++|...|+++.+..
T Consensus 448 ~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 448 LRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999987654
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.22 E-value=9.3e-10 Score=86.34 Aligned_cols=106 Identities=9% Similarity=-0.022 Sum_probs=89.5
Q ss_pred CCCcHHHHHHhhhHHHh-----------hccHHHHHHHHHHHhccCCC--CchHHHHHHHHHhhh-----CCHHHHHHHH
Q psy3701 108 DKLFLPAWLMYGHSFAV-----------ENEHDQAMAAYFNAFNLFKG--CHLPALYVGLECGLT-----NNARLASKFF 169 (342)
Q Consensus 108 ~~~~~~~~~~la~~~~~-----------~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~-----~~~~~A~~~~ 169 (342)
+|+++++++..|.+... .+....|...++++++++|+ +..++..+|.+|... |+.++|.++|
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f 227 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF 227 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence 45556666666655432 23467899999999999999 666999999999995 9999999999
Q ss_pred HHHHhhCCCC-hHHHHHHHHHHHH-hcChhHHHHHHHHHHHhhhhc
Q psy3701 170 DLALSIAHED-PFVIHEMGVIAYQ-NHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 170 ~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~ 213 (342)
+++++++|+. ..+++.+|..+.. .|++++|...+++++...|..
T Consensus 228 erAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 228 EHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999999975 9999999999988 499999999999999998885
No 207
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=4.5e-09 Score=91.72 Aligned_cols=204 Identities=14% Similarity=0.109 Sum_probs=153.9
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC
Q psy3701 63 LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF 142 (342)
Q Consensus 63 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 142 (342)
...++++++...|..+..|...+......|+.++|...|++++.. |.+...|...+... ..++ ....+.......
T Consensus 198 v~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~---~~~~l~~~~~~~ 272 (493)
T 2uy1_A 198 MHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEA---VYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTH---HHHHHHHHTC--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhH---HHHHHHHHHHhh
Confidence 456778888889999999999999999999999999999999999 98877776555431 1111 111111111101
Q ss_pred ----------CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc-ChhHHHHHHHHHHHhhh
Q psy3701 143 ----------KGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH-NYTVAENCFMEALSKVK 211 (342)
Q Consensus 143 ----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~ 211 (342)
+.....|...+....+.++.+.|...|+++ ...+....+|...+.+....+ +.+.|...|+.+++..|
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~ 351 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP 351 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence 111245666677777788899999999999 433345677777777777666 59999999999999888
Q ss_pred hcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3701 212 QLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIG 291 (342)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 291 (342)
+. +..+...+......|+.+.|...|+++ +.....|....
T Consensus 352 ~~------------------------------------~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~ 391 (493)
T 2uy1_A 352 DS------------------------------------TLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMI 391 (493)
T ss_dssp TC------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHH
T ss_pred CC------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHH
Confidence 76 456777778788899999999999997 45677888888
Q ss_pred HHHHHhCChHHHHHHHHHHHh
Q psy3701 292 YIQALTGDLDSAVNYFHKTMA 312 (342)
Q Consensus 292 ~~~~~~g~~~~A~~~~~~al~ 312 (342)
..-...|+.+.+...+++++.
T Consensus 392 ~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 392 EYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888999999999998885
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.18 E-value=1.1e-10 Score=101.11 Aligned_cols=134 Identities=7% Similarity=-0.045 Sum_probs=102.1
Q ss_pred hhHHHhhccHHHHHHHHHHHhccC-----CCC---chHHHHHHHHHhhhCCHHHHHHHHHHHHhh-----CCCCh---HH
Q psy3701 119 GHSFAVENEHDQAMAAYFNAFNLF-----KGC---HLPALYVGLECGLTNNARLASKFFDLALSI-----AHEDP---FV 182 (342)
Q Consensus 119 a~~~~~~g~~~~A~~~~~~al~~~-----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~ 182 (342)
+..+..+|++++|+..+++++++. |++ ..++..+|.+|..+|++++|+.++++++.+ .|+++ ..
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 344567788888888888887652 333 345666888888888888888888888764 35555 45
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
++++|.+|..+|++++|+..+++++++....- ....|....+...++.++..
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l----------------------------G~~Hp~~~~~~~~l~~~~~e 447 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTH----------------------------GPSHPITKDLEAMRMQTEME 447 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----------------------------CTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh----------------------------CCCChHHHHHHHHHHHHHHH
Confidence 88999999999999999999999998754431 01233345677889999999
Q ss_pred hhhHHHHHHHHHHHHhhC
Q psy3701 263 LKKYEEALEFHKQALVVA 280 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~~~ 280 (342)
++.+++|...|.++.+..
T Consensus 448 ~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 448 LRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999986543
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.15 E-value=6.3e-09 Score=85.19 Aligned_cols=148 Identities=9% Similarity=0.056 Sum_probs=102.5
Q ss_pred ccCCCCchHHH--HHHHHHhhhC---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcCh----hHHHHHHHHHHHhh
Q psy3701 140 NLFKGCHLPAL--YVGLECGLTN---NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY----TVAENCFMEALSKV 210 (342)
Q Consensus 140 ~~~~~~~~~~~--~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~al~~~ 210 (342)
...|.+..++- ..|..+...+ ...+|+.+|+++++++|+.+.++..++.++.....+ ......+.+++...
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 33455555443 3455555443 357788888888888888888877777766521111 11111111111110
Q ss_pred hhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHH
Q psy3701 211 KQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 290 (342)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 290 (342)
......+..+.++..++..+...|++++|+..+++++.++|+ ...+..+
T Consensus 268 ------------------------------~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~ll 316 (372)
T 3ly7_A 268 ------------------------------VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLL 316 (372)
T ss_dssp ------------------------------HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred ------------------------------HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence 011123344688888999898899999999999999999974 6788899
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701 291 GYIQALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 291 ~~~~~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
|.++...|++++|++.|++|+.++|..+
T Consensus 317 G~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 317 GKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 9999999999999999999999999876
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.14 E-value=4.4e-09 Score=82.55 Aligned_cols=110 Identities=8% Similarity=-0.048 Sum_probs=91.3
Q ss_pred hhCCCChHHHHHHHHHHHH-----hcC------hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch
Q psy3701 174 SIAHEDPFVIHEMGVIAYQ-----NHN------YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG 242 (342)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~-----~~~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
+.+|+++..++..|.+... .|. ..+|...++++++++|+..
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~---------------------------- 197 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQ---------------------------- 197 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHH----------------------------
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcc----------------------------
Confidence 4567777777666655532 132 4789999999999999841
Q ss_pred hccCCCChHHHHHHHHHHHHh-----hhHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHH-hCChHHHHHHHHHHHhccc
Q psy3701 243 EIIADKWEPLLNNLGHVNRKL-----KKYEEALEFHKQALVVAPMK-ASTFCCIGYIQAL-TGDLDSAVNYFHKTMALKR 315 (342)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p 315 (342)
...+|..+|.+|... |+.++|..+|+++++++|+. ..+++..|..+.. .|++++|..++++++..+|
T Consensus 198 ------~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 198 ------EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp ------HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred ------cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 046999999999985 99999999999999999975 9999999999988 5999999999999999988
Q ss_pred Cc
Q psy3701 316 DD 317 (342)
Q Consensus 316 ~~ 317 (342)
..
T Consensus 272 ~~ 273 (301)
T 3u64_A 272 ES 273 (301)
T ss_dssp GG
T ss_pred CC
Confidence 74
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.11 E-value=1.6e-09 Score=76.84 Aligned_cols=84 Identities=6% Similarity=0.050 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhC-C-CchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701 250 EPLLNNLGHVNRKLK---KYEEALEFHKQALVVA-P-MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML 324 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 324 (342)
.++.+++|+++.+.+ +.++++..++..++.+ | +..++++++|..+.++|+|++|+++++++++++|++..+....
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 689999999999987 7889999999999998 7 5689999999999999999999999999999999999999888
Q ss_pred HHHHHHhhh
Q psy3701 325 SYVIEQLIE 333 (342)
Q Consensus 325 ~~~~~~~~~ 333 (342)
..+-....+
T Consensus 112 ~~ie~~~~k 120 (152)
T 1pc2_A 112 RLIDKAMKK 120 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666544
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.10 E-value=1.5e-09 Score=71.34 Aligned_cols=74 Identities=12% Similarity=0.087 Sum_probs=66.5
Q ss_pred CCCcHHHHHHHHHHHHHhCC---hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch
Q psy3701 74 YPDSAIAWYAVGCYYYLIGR---SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL 147 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 147 (342)
+|++++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..+...|+|++|+..|+++++.+|..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 68899999999999987665 799999999999999999999999999999999999999999999999988443
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.00 E-value=5.9e-09 Score=68.46 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=66.7
Q ss_pred CCChHHHHHHHHHHHHhhh---HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701 247 DKWEPLLNNLGHVNRKLKK---YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF 319 (342)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 319 (342)
|..+..+..+|.++...++ .++|...++++++.+|+++.+++.+|..+...|++++|+.+++++++.+|.++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4457899999999976666 799999999999999999999999999999999999999999999999998544
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.96 E-value=1.9e-08 Score=71.29 Aligned_cols=98 Identities=18% Similarity=0.106 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc---ChhHHHHHHHHHHHhh-hhcCccccccchhhHHHHhhhhHHHH
Q psy3701 161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH---NYTVAENCFMEALSKV-KQLGGEIIADKWEPLLNNLGHKAEDK 236 (342)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
....+.+.|.+.+..+|.+.++.+.+|.++.+.+ +.++++..++..++.+ |...
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~---------------------- 70 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ---------------------- 70 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH----------------------
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch----------------------
Confidence 4556777777777778888899999999999877 6668999999999887 6332
Q ss_pred HHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q psy3701 237 VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI 293 (342)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 293 (342)
.+.++++|..+.+.|+|++|+++++++++++|++..+....-.+
T Consensus 71 -------------rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 71 -------------RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp -------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 47889999999999999999999999999999888776554433
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.95 E-value=1.7e-08 Score=68.03 Aligned_cols=79 Identities=25% Similarity=0.214 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-------CCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHh
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA-------PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATT 322 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 322 (342)
+.-++.+|..+...|+|..|+.+|+++++.. +....++..+|.++.++|+++.|+.+++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4677899999999999999999999999863 345788999999999999999999999999999999999988
Q ss_pred HHHHHH
Q psy3701 323 MLSYVI 328 (342)
Q Consensus 323 ~l~~~~ 328 (342)
++...-
T Consensus 85 n~~~~~ 90 (104)
T 2v5f_A 85 NLKYFE 90 (104)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 887433
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.91 E-value=7.9e-09 Score=88.09 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=84.6
Q ss_pred HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701 192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE 271 (342)
Q Consensus 192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 271 (342)
..|+|++|+..+++++++....- ....+....++.++|.+|..+|+|++|+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~l----------------------------g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~ 361 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVF----------------------------EDSNVYMLHMMYQAMGVCLYMQDWEGALK 361 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTB----------------------------CTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCcc----------------------------ChhchHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 46789999999999998754431 01223346789999999999999999999
Q ss_pred HHHHHHhh-----CCCc---hHHHHHHHHHHHHhCChHHHHHHHHHHHhc-----ccCchhHHhHH
Q psy3701 272 FHKQALVV-----APMK---ASTFCCIGYIQALTGDLDSAVNYFHKTMAL-----KRDDSFATTML 324 (342)
Q Consensus 272 ~~~~al~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l 324 (342)
++++++++ .|++ ...+.++|.+|..+|++++|+..|++++++ .|+++.+....
T Consensus 362 ~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~ 427 (433)
T 3qww_A 362 YGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIK 427 (433)
T ss_dssp HHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 99999975 3444 467899999999999999999999999875 58888765543
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.86 E-value=5.1e-08 Score=65.70 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=71.2
Q ss_pred ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHH
Q psy3701 179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGH 258 (342)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 258 (342)
++.-.+.+|..++..|+|..|+.+|+++++..+... ........++..+|.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-----------------------------~~~~~~~~i~~~L~~ 54 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-----------------------------ISTIDKVSVLDYLSY 54 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----------------------------CCSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-----------------------------CCcccHHHHHHHHHH
Confidence 455678999999999999999999999998765431 012233678999999
Q ss_pred HHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3701 259 VNRKLKKYEEALEFHKQALVVAPMKASTFCCIG 291 (342)
Q Consensus 259 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 291 (342)
++.++|++++|+.+++++++..|++..+..+++
T Consensus 55 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 55 AVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 999999999999999999999999999888776
No 218
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.82 E-value=1.1e-06 Score=76.86 Aligned_cols=127 Identities=5% Similarity=-0.179 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhc--CCCcHHHHHHhhhHHHhh---------ccHHHHHHHHHHHhccCC-CCchH
Q psy3701 81 WYAVGCYYYLIGRSDPARRFLGKATSL--DKLFLPAWLMYGHSFAVE---------NEHDQAMAAYFNAFNLFK-GCHLP 148 (342)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~-~~~~~ 148 (342)
+..+-..+.+.|+.++|+..|++..+. .| +...|..+-.++... +..++|.+.|++.....- .+..+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 444456666777777777777776653 23 344455554444432 234556666555544321 12344
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q psy3701 149 ALYVGLECGLTNNARLASKFFDLALSIA-HEDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208 (342)
Q Consensus 149 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 208 (342)
+..+...+.+.|++++|.++|++..+.. +-+...+..+-..+.+.|+.++|...|++..+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4445555555555555555555554432 11444555555555555555555555555544
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.81 E-value=5.4e-08 Score=83.11 Aligned_cols=115 Identities=13% Similarity=0.053 Sum_probs=88.8
Q ss_pred HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 267 (342)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (342)
.-+..+|+|++|+..+++++++....- ....+....++.++|.+|..+|+|+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~l----------------------------g~~h~~~~~~~~~L~~~y~~~g~~~ 346 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERL----------------------------PDINIYQLKVLDCAMDACINLGLLE 346 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCC----------------------------CTTSHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcC----------------------------CccchHHHHHHHHHHHHHHhhccHH
Confidence 345578999999999999998643321 0112333678999999999999999
Q ss_pred HHHHHHHHHHhh-----CCCc---hHHHHHHHHHHHHhCChHHHHHHHHHHHhc-----ccCchhHHhH---HHHHHHH
Q psy3701 268 EALEFHKQALVV-----APMK---ASTFCCIGYIQALTGDLDSAVNYFHKTMAL-----KRDDSFATTM---LSYVIEQ 330 (342)
Q Consensus 268 ~A~~~~~~al~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~---l~~~~~~ 330 (342)
+|+.++++++.. .|++ ...+.++|.+|..+|++++|+.++++++++ .|+++.+... |+.+...
T Consensus 347 eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 347 EALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 999999999975 3444 467899999999999999999999999875 5788765544 4554443
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.78 E-value=3.8e-08 Score=83.88 Aligned_cols=103 Identities=7% Similarity=-0.001 Sum_probs=83.1
Q ss_pred hhhCCHHHHHHHHHHHHhh-----CCCCh---HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH
Q psy3701 157 GLTNNARLASKFFDLALSI-----AHEDP---FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN 228 (342)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 228 (342)
...|++++|+..+++++.+ .|+++ .++.++|.+|..+|+|++|+.++++++.+....-
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l-------------- 374 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY-------------- 374 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS--------------
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc--------------
Confidence 3458899999999999974 45665 4578999999999999999999999998754431
Q ss_pred hhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCchHHH
Q psy3701 229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMKASTF 287 (342)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~ 287 (342)
....|..+..+.++|.+|..+|++++|+.+|++++++ .|+++.+.
T Consensus 375 --------------G~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 375 --------------PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp --------------CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred --------------CCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 1123445678999999999999999999999999975 56766543
No 221
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.74 E-value=4.7e-06 Score=72.79 Aligned_cols=170 Identities=8% Similarity=-0.070 Sum_probs=128.0
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHHhccCC-CCchHHHHHHHHHhhhC---------CHHHHHHHHHHHHhhC-CCChHH
Q psy3701 114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFK-GCHLPALYVGLECGLTN---------NARLASKFFDLALSIA-HEDPFV 182 (342)
Q Consensus 114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~---------~~~~A~~~~~~~~~~~-~~~~~~ 182 (342)
.+..+-..+.+.|+.++|++.|+++.+..- .+...+..+-.++...+ ..++|.++|++..... +-+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 355566788899999999999998887532 23445555555555433 4788999999887643 226778
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
+..+...+.+.|++++|..+|++..+..-... ...|..+-..|.+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-----------------------------------~~tyn~lI~~~~~ 152 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-----------------------------------LRSYGPALFGFCR 152 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-----------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-----------------------------------cceehHHHHHHHH
Confidence 88899999999999999999998876532221 4688888899999
Q ss_pred hhhHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHhCChHHHHHHHHHHHh--cccCch
Q psy3701 263 LKKYEEALEFHKQALVVA-PMKASTFCCIGYIQALTGDLDSAVNYFHKTMA--LKRDDS 318 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~ 318 (342)
.|+.++|.+.|++..+.. ..+..++..+-..+.+.|+.++|.+.+++..+ ..|+..
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 999999999999988764 23567788899999999999999999998865 456443
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.73 E-value=3.6e-08 Score=84.17 Aligned_cols=114 Identities=7% Similarity=-0.115 Sum_probs=89.0
Q ss_pred HHhhhCCHHHHHHHHHHHHhh-----CCCCh---HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHH
Q psy3701 155 ECGLTNNARLASKFFDLALSI-----AHEDP---FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLL 226 (342)
Q Consensus 155 ~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 226 (342)
-+...|++++|+..+++++.+ .|+++ .++.++|.+|..+|+|++|+.++++++.+....-
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l------------ 363 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF------------ 363 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS------------
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc------------
Confidence 356789999999999999975 35554 4688999999999999999999999998754431
Q ss_pred HHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCchH---HHHHHHHHHHH
Q psy3701 227 NNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMKAS---TFCCIGYIQAL 296 (342)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~---~~~~l~~~~~~ 296 (342)
....|..+..++++|.+|..+|++++|+.++++++++ .|+++. +..+++.+...
T Consensus 364 ----------------g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 364 ----------------PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp ----------------CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred ----------------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 1123444678999999999999999999999999975 566664 44555555543
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.62 E-value=6.5e-07 Score=61.05 Aligned_cols=84 Identities=5% Similarity=0.053 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHhhhHHH---HHHHHHHHHhhC-C-CchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701 250 EPLLNNLGHVNRKLKKYEE---ALEFHKQALVVA-P-MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML 324 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 324 (342)
..+.+++|+++.+..+... ++..++..+..+ | ...+.++.+|..+.+.|+|++|+.+++..++..|++..+..+.
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 6899999999988776555 999999998877 5 4668999999999999999999999999999999999998887
Q ss_pred HHHHHHhhh
Q psy3701 325 SYVIEQLIE 333 (342)
Q Consensus 325 ~~~~~~~~~ 333 (342)
..+-.+...
T Consensus 115 ~~i~~~i~k 123 (126)
T 1nzn_A 115 RLIDKAMKK 123 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777665543
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.58 E-value=3e-06 Score=59.00 Aligned_cols=120 Identities=8% Similarity=0.050 Sum_probs=98.0
Q ss_pred hCCCChHHHHHHHHHHHHhcCh------hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCC
Q psy3701 175 IAHEDPFVIHEMGVIAYQNHNY------TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADK 248 (342)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
..|.+++.|..........|+. ++-++.|++++..-|... ...|. .
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k----~~~wr------------------------r 59 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK----YGQNE------------------------S 59 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG----GTTCH------------------------H
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc----cccHH------------------------H
Confidence 5789999999999999999999 888899999998877652 11221 1
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhH
Q psy3701 249 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTM 323 (342)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 323 (342)
+...|...+.. ...++.++|...|+.+++.+...+.+|...|..-.++|+...|++.+.+++.+.|........
T Consensus 60 YI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 60 FARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 24577777755 566999999999999999988889999999999999999999999999999999987655443
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.48 E-value=4.6e-06 Score=56.86 Aligned_cols=97 Identities=18% Similarity=0.073 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhH---HHHHHHHHHHhh-hhcCccccccchhhHHHHhhhhHHHH
Q psy3701 161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTV---AENCFMEALSKV-KQLGGEIIADKWEPLLNNLGHKAEDK 236 (342)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
....+.+.|.+....++.+..+.+.+|+++.+..+..+ ++.+++..+... |...
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~---------------------- 73 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ---------------------- 73 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH----------------------
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchH----------------------
Confidence 34455666666666667777788888888877766655 777887777765 4221
Q ss_pred HHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHH
Q psy3701 237 VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGY 292 (342)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 292 (342)
-+.++.+|..+.+.|+|++|..+++..++..|++..+......
T Consensus 74 -------------Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 74 -------------RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4677888888888888888888888888888888766554433
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.34 E-value=1.2e-05 Score=56.01 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=32.6
Q ss_pred hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 159 TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 159 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
.++.++|.+.|+.++.....-+.+|...|..-.++|+...|.+.+.+++...|..
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3555555555555555544455566666666666666666666666666665554
No 227
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.25 E-value=2.4e-05 Score=53.43 Aligned_cols=84 Identities=11% Similarity=0.024 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701 250 EPLLNNLGHVNRKLK---KYEEALEFHKQALVVAPM-KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS 325 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 325 (342)
+.+.+++|+++.+.. +..+++..++..++.+|. ..+.++.+|..+.++|+|++|+.+.+..++..|++..+.....
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 678999999998765 456899999999998884 5689999999999999999999999999999999999988877
Q ss_pred HHHHHhhh
Q psy3701 326 YVIEQLIE 333 (342)
Q Consensus 326 ~~~~~~~~ 333 (342)
.+-.+..+
T Consensus 120 ~Ie~ki~k 127 (134)
T 3o48_A 120 MVEDKIQK 127 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77666554
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.23 E-value=7.5e-05 Score=51.73 Aligned_cols=87 Identities=10% Similarity=0.008 Sum_probs=74.7
Q ss_pred CCChHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHh
Q psy3701 247 DKWEPLLNNLGHVNRKLK---KYEEALEFHKQALVVAPM-KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATT 322 (342)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 322 (342)
.....+.+++|+++.+.. +..+++..++..+...|. ..+.++.+|..+.++|+|.+|+.+.+..++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 344689999999998765 456899999999998884 5688999999999999999999999999999999999988
Q ss_pred HHHHHHHHhhh
Q psy3701 323 MLSYVIEQLIE 333 (342)
Q Consensus 323 ~l~~~~~~~~~ 333 (342)
+...+-.+...
T Consensus 116 Lk~~Ie~~i~k 126 (144)
T 1y8m_A 116 LKSMVEDKIQK 126 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87777666543
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.07 E-value=2.4e-05 Score=55.80 Aligned_cols=133 Identities=11% Similarity=-0.108 Sum_probs=77.3
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q psy3701 36 LLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD------SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK 109 (342)
Q Consensus 36 ~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 109 (342)
+...+.....|.|+.|+-.....+ .+.+.+|+ ...++..+|..++..++|.+|...|+++++...
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLl---------Sl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLL---------TLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH---------HHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH---------HhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 344555666677777776666532 11223443 245889999999999999999999999976532
Q ss_pred ---CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701 110 ---LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM 186 (342)
Q Consensus 110 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 186 (342)
+.......++. ..... ..... +.+.+..+.++.|+...+++++|+..++.+-. ....+.+...+
T Consensus 95 ~l~k~~s~~~~~~~----~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~L 161 (167)
T 3ffl_A 95 ALSKTSKVRPSTGN----SASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLL 161 (167)
T ss_dssp CC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHH
T ss_pred HHhcCCCccccccc----cCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHH
Confidence 22221111110 00000 01111 23446677788888888888888888766422 23466777777
Q ss_pred HHHH
Q psy3701 187 GVIA 190 (342)
Q Consensus 187 ~~~~ 190 (342)
|.+|
T Consensus 162 akLy 165 (167)
T 3ffl_A 162 ANLY 165 (167)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 7765
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.06 E-value=0.00013 Score=52.10 Aligned_cols=120 Identities=8% Similarity=-0.103 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHH
Q psy3701 181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN 260 (342)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (342)
.++..-...+...|.|+.|+-....++.....+++... +.....++..+|.++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s---------------------------p~~~~~~l~~ladal 73 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS---------------------------PPQKYQLLVYHADSL 73 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC---------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc---------------------------HHHHHHHHHHHHHHH
Confidence 34566677788899999999999998887655531000 001145888999999
Q ss_pred HHhhhHHHHHHHHHHHHhhC------C-------------------CchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701 261 RKLKKYEEALEFHKQALVVA------P-------------------MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR 315 (342)
Q Consensus 261 ~~~g~~~~A~~~~~~al~~~------~-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 315 (342)
+..|+|..|...|+++++.. + .+.++.+.++.|+...|++++|+..++.+-.. -
T Consensus 74 f~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~ 152 (167)
T 3ffl_A 74 FHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-Q 152 (167)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-G
T ss_pred HcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-h
Confidence 99999999999999987542 1 11267899999999999999999998764322 2
Q ss_pred CchhHHhHHHHHH
Q psy3701 316 DDSFATTMLSYVI 328 (342)
Q Consensus 316 ~~~~~~~~l~~~~ 328 (342)
..+.+...|++++
T Consensus 153 Rt~kvnm~LakLy 165 (167)
T 3ffl_A 153 RTPKINMLLANLY 165 (167)
T ss_dssp CCHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHh
Confidence 3456667777664
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.82 E-value=0.0013 Score=45.65 Aligned_cols=82 Identities=7% Similarity=-0.040 Sum_probs=63.2
Q ss_pred CCChHHHHHHHHHHHHhcCh---hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHH
Q psy3701 177 HEDPFVIHEMGVIAYQNHNY---TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLL 253 (342)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (342)
.-.+.+.+++|+++.+..+. .+++.+++..+...|... -+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~-----------------------------------RdcL 80 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR-----------------------------------RECL 80 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH-----------------------------------HHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch-----------------------------------hHHH
Confidence 44677888888888887654 468888888888666442 4788
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q psy3701 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI 293 (342)
Q Consensus 254 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 293 (342)
+.+|..+.++|+|++|..+.+..++..|++..+......+
T Consensus 81 YyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 81 YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 8899999999999999999999999999887765544333
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.79 E-value=0.00088 Score=45.83 Aligned_cols=80 Identities=8% Similarity=-0.039 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHHHhcCh---hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHH
Q psy3701 179 DPFVIHEMGVIAYQNHNY---TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNN 255 (342)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (342)
.+.+.+++|+++.+..+. .+++..++..++..|... -+.++.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~-----------------------------------Rd~LYy 83 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR-----------------------------------RECLYY 83 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH-----------------------------------HHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh-----------------------------------HHHHHH
Confidence 567788888888877654 468888888888777442 478888
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q psy3701 256 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI 293 (342)
Q Consensus 256 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 293 (342)
+|..+.++|+|++|..+.+..++..|++..+......+
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999988766544443
No 233
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.68 E-value=0.0028 Score=52.98 Aligned_cols=179 Identities=13% Similarity=0.071 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 157 (342)
..+...+|..|...|+.++-.+++......-+..+.+ ++.+..+..+...+..+
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka---------------k~~k~v~~l~~~~~~~~----------- 72 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA---------------KAAKLVRSLVDMFLDMD----------- 72 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH---------------HHHHHHHHHHHHHTTSC-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH---------------HHHHHHHHHHHHHhcCC-----------
Confidence 3566777777777777777777776654433332222 12222333332222111
Q ss_pred hhCCHHHHHHHHHHHHhhCCCChHH------HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhh
Q psy3701 158 LTNNARLASKFFDLALSIAHEDPFV------IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH 231 (342)
Q Consensus 158 ~~~~~~~A~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 231 (342)
+..+.-++.+..+++........ -..+|.+|+..|+|.+|...+.+..+......
T Consensus 73 --~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d----------------- 133 (394)
T 3txn_A 73 --AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLD----------------- 133 (394)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS-----------------
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc-----------------
Confidence 12233334444444332222122 23789999999999999999999887654421
Q ss_pred hHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC---CCch----HHHHHHHHHHH-HhCChHHH
Q psy3701 232 KAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA---PMKA----STFCCIGYIQA-LTGDLDSA 303 (342)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~----~~~~~l~~~~~-~~g~~~~A 303 (342)
......+++.....+|...|++.++...+.++.... +.++ .....-|..+. ..++|..|
T Consensus 134 -------------d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A 200 (394)
T 3txn_A 134 -------------DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTA 200 (394)
T ss_dssp -------------CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred -------------cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHH
Confidence 011124677778889999999999999999987643 1222 34566788888 89999999
Q ss_pred HHHHHHHHhcc
Q psy3701 304 VNYFHKTMALK 314 (342)
Q Consensus 304 ~~~~~~al~~~ 314 (342)
..+|-++.+-.
T Consensus 201 ~~~F~eaf~~f 211 (394)
T 3txn_A 201 FSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999887543
No 234
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.40 E-value=0.044 Score=45.80 Aligned_cols=168 Identities=17% Similarity=0.068 Sum_probs=109.1
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHH-------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALL-------ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGK 103 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 103 (342)
.....+.+|..|...|+.++-.+++..... .++.++.+.++..-+.. -+..+.-++.+..
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~-------------~~~~~~~~~~~~~ 84 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDM-------------DAGTGIEVQLCKD 84 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTS-------------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcC-------------CCcHHHHHHHHHH
Confidence 345667899999999999999998887641 33334343333322111 1122222333344
Q ss_pred HhhcCCCcHH------HHHHhhhHHHhhccHHHHHHHHHHHhccCCC--C----chHHHHHHHHHhhhCCHHHHHHHHHH
Q psy3701 104 ATSLDKLFLP------AWLMYGHSFAVENEHDQAMAAYFNAFNLFKG--C----HLPALYVGLECGLTNNARLASKFFDL 171 (342)
Q Consensus 104 a~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 171 (342)
+++...+.-. .-..+|..|...|+|.+|.+.+.+..+.... + .+.+..-..+|...+++.++...+.+
T Consensus 85 ~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 85 CIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4433222211 2347899999999999999998888764322 1 13344456778899999999999998
Q ss_pred HHhhC---CCChH----HHHHHHHHHH-HhcChhHHHHHHHHHHHhhh
Q psy3701 172 ALSIA---HEDPF----VIHEMGVIAY-QNHNYTVAENCFMEALSKVK 211 (342)
Q Consensus 172 ~~~~~---~~~~~----~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~ 211 (342)
+.... +.+|. +...-|..+. ..++|.+|...|-++++...
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 87543 23343 3455678888 89999999999999875543
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.012 Score=53.55 Aligned_cols=134 Identities=10% Similarity=0.052 Sum_probs=84.9
Q ss_pred hhCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHH--Hh-cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhH
Q psy3701 158 LTNN-ARLASKFFDLALSIAHEDPFVIHEMGVIAY--QN-HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA 233 (342)
Q Consensus 158 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (342)
..++ ++.|+..+++....+|.... ....+.+.. .. .+--+|+..+.+.++............. ... ..
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~-~~~----~~-- 331 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRD-ADS----AR-- 331 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCC-HHH----HH--
T ss_pred ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccc-ccc----cc--
Confidence 3455 57799999998888885543 222222222 11 2334577777777643211000000000 000 00
Q ss_pred HHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701 234 EDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT 310 (342)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 310 (342)
..+.....+..-+..+...|+++-|+...++++...|.....|+.|+.+|..+|+++.|+-.+.-+
T Consensus 332 -----------~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 -----------LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred -----------ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 000002355556777888999999999999999999999999999999999999999999877665
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.0037 Score=56.73 Aligned_cols=112 Identities=11% Similarity=-0.025 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHH---HhhhCCHHHHHHHHHHHHhh--------CCCC----------hHHHHHH
Q psy3701 128 HDQAMAAYFNAFNLFKGCHLPALYVGLE---CGLTNNARLASKFFDLALSI--------AHED----------PFVIHEM 186 (342)
Q Consensus 128 ~~~A~~~~~~al~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~--------~~~~----------~~~~~~l 186 (342)
++.|+..+++....+|.... .+..+.+ .....+--+|++.+.+.++. .+.+ ...+...
T Consensus 265 ~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 46677777777666665322 1111111 11122334555555555431 1222 2244555
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701 187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY 266 (342)
Q Consensus 187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (342)
+..+...|+++-|+.+.++++...|.. ...|..|+.+|..+|+|
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPse------------------------------------F~tW~~La~vYi~l~d~ 387 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDS------------------------------------FESWYNLARCHIKKEEY 387 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSC------------------------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchh------------------------------------hHHHHHHHHHHHHhccH
Confidence 666677788888888888888877777 57788888888888888
Q ss_pred HHHHHHHHHH
Q psy3701 267 EEALEFHKQA 276 (342)
Q Consensus 267 ~~A~~~~~~a 276 (342)
+.|+-.+..+
T Consensus 388 e~ALLtLNSc 397 (754)
T 4gns_B 388 EKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHhcC
Confidence 8887666554
No 237
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.052 Score=39.50 Aligned_cols=109 Identities=14% Similarity=0.063 Sum_probs=69.3
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC 156 (342)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 156 (342)
+++.-+.++ ...|+++.|.+..+.. ++...|..+|......|+++-|..+|+++-. +-.+..+|
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLY 70 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHH
Confidence 344445444 4678888888877654 4577788888888888888888888887632 22344556
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHH
Q psy3701 157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEA 206 (342)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 206 (342)
...|+.+.-.+.-+.+..... +.....+++.+|+++++++.|.+.
T Consensus 71 ~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 666666655544444433221 223344566778888888777553
No 238
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.97 E-value=0.011 Score=51.21 Aligned_cols=84 Identities=19% Similarity=0.308 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
..+..+|.+......+..|..+|.+|..+.|++...+..+|.+....|+.-+|.-+|.+++......+.+..+|..++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 46777899988888999999999999999999999999999999999999999999999999888899999999999987
Q ss_pred hhhc
Q psy3701 331 LIEE 334 (342)
Q Consensus 331 ~~~~ 334 (342)
..+.
T Consensus 233 ~~~~ 236 (497)
T 1ya0_A 233 ALES 236 (497)
T ss_dssp HTTS
T ss_pred HHhh
Confidence 6543
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.065 Score=38.98 Aligned_cols=19 Identities=5% Similarity=-0.221 Sum_probs=12.7
Q ss_pred HHHHHHhhhHHHHHHHHHH
Q psy3701 257 GHVNRKLKKYEEALEFHKQ 275 (342)
Q Consensus 257 ~~~~~~~g~~~~A~~~~~~ 275 (342)
..++..+|+++++++.|.+
T Consensus 96 f~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 96 LLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 3445667777777777755
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.91 E-value=0.12 Score=48.05 Aligned_cols=75 Identities=11% Similarity=-0.130 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCC
Q psy3701 82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNN 161 (342)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~ 161 (342)
..+...+...|.+++|+...+ ++... -......|++++|.+..+. .++...|..+|..+...++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence 444455556666666654432 11111 1233456666666665422 1334566666666666666
Q ss_pred HHHHHHHHHHH
Q psy3701 162 ARLASKFFDLA 172 (342)
Q Consensus 162 ~~~A~~~~~~~ 172 (342)
++.|+++|.++
T Consensus 697 ~~~A~~~y~~~ 707 (814)
T 3mkq_A 697 FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66666666654
No 241
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.89 E-value=0.061 Score=49.93 Aligned_cols=166 Identities=12% Similarity=-0.033 Sum_probs=100.8
Q ss_pred HHHHhCChHHHHH-HHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHH
Q psy3701 87 YYYLIGRSDPARR-FLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLA 165 (342)
Q Consensus 87 ~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 165 (342)
.....+++++|.+ .+.. -|+ ......+...+...|.+++|+...+ ++.. ........|++++|
T Consensus 608 ~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~---~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQ---KFELALKVGQLTLA 671 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHH---HHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccch---heehhhhcCCHHHH
Confidence 3346788888876 4311 110 1122556677778888888887542 1222 23345778999999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhcc
Q psy3701 166 SKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII 245 (342)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
.+..+. .+++..|..+|..+...++++.|+.+|.++-....-. .++..
T Consensus 672 ~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~----------~l~~~----------------- 719 (814)
T 3mkq_A 672 RDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLF----------LLHSS----------------- 719 (814)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHH----------HHHHH-----------------
T ss_pred HHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhH----------HHHHH-----------------
Confidence 987643 3678999999999999999999999999863322110 00000
Q ss_pred CCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701 246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHK 309 (342)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 309 (342)
......+..++......|++..|...|.+. .+ ......+|.+.+++++|...-++
T Consensus 720 -~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~---~~~a~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 720 -FNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GD---IQGAKDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TC---HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CC---HHHHHHHHHHcCChHHHHHHHHH
Confidence 011234455666666677777766665442 11 12234456677777777765443
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.84 E-value=0.072 Score=38.09 Aligned_cols=206 Identities=12% Similarity=-0.001 Sum_probs=98.3
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC-CchHHHHHH
Q psy3701 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG-CHLPALYVG 153 (342)
Q Consensus 75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~ 153 (342)
|..++.-..++..++-.|.+..++..+.+. +...+.+.-+.|+....++..|+..+++.++-.-+ ++.+-..+
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~- 103 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI- 103 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH-
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc-
Confidence 333444455566666666666666554331 23444555556666666666666666666632111 01000000
Q ss_pred HHHhhhCCHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH-hhh
Q psy3701 154 LECGLTNNARLASKFFDLALSIAHEDPF-VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN-LGH 231 (342)
Q Consensus 154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~ 231 (342)
+..-.+|.+.+ .+..+|.++...|+-++|+.++.......|--+. .-..++.+ ...
T Consensus 104 -----------------~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~-----vEnliyeN~vp~ 161 (242)
T 3kae_A 104 -----------------QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP-----VENLLLENKVPQ 161 (242)
T ss_dssp -----------------HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH-----HHHHHHTTCCCC
T ss_pred -----------------ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch-----HHHHHhhcCCCc
Confidence 01113455544 3567788888999999999999888877664420 00000000 000
Q ss_pred -hHHHHHHHhchhccCCCCh-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH-HHHHHHHHHHhCChHHHHHHHH
Q psy3701 232 -KAEDKVKQLGGEIIADKWE-PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST-FCCIGYIQALTGDLDSAVNYFH 308 (342)
Q Consensus 232 -~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~ 308 (342)
...+-.... ...... ..+......+..... ...++-...-|.-... ....+..+..+|-.++...+|.
T Consensus 162 ~~d~~~i~~~----~~~~i~~~y~~d~~~lHe~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~ 232 (242)
T 3kae_A 162 KRDKENVRQT----GRRGIEEEYVSDSIEFHESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFE 232 (242)
T ss_dssp CC---------------CHHHHHHHHHHHHHHHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHhh----hhccchhhhhhhHHHHHHhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHH
Confidence 000000000 000000 000001111111110 2333444445654432 3456778889999999999999
Q ss_pred HHHhcccCc
Q psy3701 309 KTMALKRDD 317 (342)
Q Consensus 309 ~al~~~p~~ 317 (342)
...+.+|..
T Consensus 233 ~lR~kDP~F 241 (242)
T 3kae_A 233 LVRRKDPMF 241 (242)
T ss_dssp HHHHHSTTT
T ss_pred HHHhcCCCc
Confidence 999988853
No 243
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.68 E-value=0.32 Score=43.44 Aligned_cols=238 Identities=10% Similarity=-0.047 Sum_probs=121.8
Q ss_pred HHhcCCCcHHHHHHHHHHHH---HhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc
Q psy3701 70 LVDLYPDSAIAWYAVGCYYY---LIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH 146 (342)
Q Consensus 70 ~~~~~p~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 146 (342)
.+..+|+.+..-........ +.+++..-+.++.. .|.+..............|+..+|....+++.......+
T Consensus 61 Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p 136 (618)
T 1qsa_A 61 FVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP 136 (618)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC
T ss_pred HHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCc
Confidence 34557777665444443333 34566655554433 377777777777788888888777777777665544333
Q ss_pred hHHHHH------------------HHHHhhhCCHHHHHHHHHHH-------------HhhCCCChHH-------------
Q psy3701 147 LPALYV------------------GLECGLTNNARLASKFFDLA-------------LSIAHEDPFV------------- 182 (342)
Q Consensus 147 ~~~~~l------------------~~~~~~~~~~~~A~~~~~~~-------------~~~~~~~~~~------------- 182 (342)
.....+ .......|+...|......+ +..+|.+...
T Consensus 137 ~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~ 216 (618)
T 1qsa_A 137 NACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQ 216 (618)
T ss_dssp THHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHH
Confidence 332222 22233334444443332221 1122322111
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH-hhhh-HHHHHHHhchhccCCCChHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN-LGHK-AEDKVKQLGGEIIADKWEPLLNNLGHVN 260 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (342)
....+.......+.+.|...+.+.....+-+.. .....+..+... .... ..+....+................+...
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~-~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~A 295 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNED-QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA 295 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHH-HHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHH
Confidence 122233334445667777777665442221110 000000000000 0001 1111111111111111112222333344
Q ss_pred HHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701 261 RKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312 (342)
Q Consensus 261 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 312 (342)
.+.|+++.|..+|++.-...+......+.+|.++...|+.++|..+|+++..
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5679999999999876543344567789999999999999999999999976
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.65 E-value=0.034 Score=43.30 Aligned_cols=123 Identities=9% Similarity=-0.047 Sum_probs=82.2
Q ss_pred HHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHH
Q psy3701 87 YYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLAS 166 (342)
Q Consensus 87 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 166 (342)
..++.|+.++|+......++.+|.+......+...++-.|+++.|.+-++.+.+++|....... .|.. .-.|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~----~yr~---lI~aE 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS----QLRH---LVKAA 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHH----HHHH---HHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHH----HHHH---HHHHH
Confidence 3456788889999999999999999988888889999999999999999999888887432211 1110 00111
Q ss_pred HHHHHHHhh-----CCCChHHH---HHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcc
Q psy3701 167 KFFDLALSI-----AHEDPFVI---HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGE 216 (342)
Q Consensus 167 ~~~~~~~~~-----~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 216 (342)
..=.+.+.- .+..+..| ..-+......|+.++|...-.++++..|..++.
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 111111110 12223223 334555667899999999999999998877643
No 245
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.61 E-value=0.11 Score=37.15 Aligned_cols=70 Identities=11% Similarity=0.036 Sum_probs=45.3
Q ss_pred CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhh--c--CCC-------------cHH-HHHHhhhHHHhhccHHHHHHHH
Q psy3701 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATS--L--DKL-------------FLP-AWLMYGHSFAVENEHDQAMAAY 135 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~--~~~-------------~~~-~~~~la~~~~~~g~~~~A~~~~ 135 (342)
.-+...+.+..+.||....++..|+..+++.++ . +|+ +.+ .+..+|.+....|+.++|+..+
T Consensus 58 ~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~ 137 (242)
T 3kae_A 58 KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHY 137 (242)
T ss_dssp TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHh
Confidence 345677888889999999999999999999983 2 332 111 2334455555555555555555
Q ss_pred HHHhccCC
Q psy3701 136 FNAFNLFK 143 (342)
Q Consensus 136 ~~al~~~~ 143 (342)
.......|
T Consensus 138 ~~Sf~~~~ 145 (242)
T 3kae_A 138 VRSFGKSF 145 (242)
T ss_dssp HHHHHHCC
T ss_pred hhhcCCcc
Confidence 55554444
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.58 E-value=0.093 Score=44.07 Aligned_cols=107 Identities=8% Similarity=0.028 Sum_probs=75.2
Q ss_pred HHhcChhHHHHHHHHHHHhhhhcC-ccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHH
Q psy3701 191 YQNHNYTVAENCFMEALSKVKQLG-GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEA 269 (342)
Q Consensus 191 ~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 269 (342)
...|+.+.|...+++++.+..... .......|..... ....+.. ..+...++..+...|++.+|
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r--~~l~~~~-------------~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFA--TALVEDK-------------VLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHH--HHHHHHH-------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH--HHHHHHH-------------HHHHHHHHHHHHHCCCHHHH
Confidence 345677778888888877764432 0000112221110 0000000 24566678888999999999
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701 270 LEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312 (342)
Q Consensus 270 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 312 (342)
+..+.+++..+|-+...+..+..++...|+..+|+..|+++.+
T Consensus 191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988744
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.55 E-value=0.42 Score=46.38 Aligned_cols=118 Identities=13% Similarity=-0.021 Sum_probs=82.0
Q ss_pred HHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC-------------------
Q psy3701 84 VGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG------------------- 144 (342)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------- 144 (342)
+...+...+.++-+.. .+...|.++...+.+|.++...|++++|..+|+++-.-...
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4445556666665544 23345666777788999999999999999999887432100
Q ss_pred ----CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC-h----HHHHHHHHHHHHhcChhHHHHHHHH
Q psy3701 145 ----CHLPALYVGLECGLTNNARLASKFFDLALSIAHED-P----FVIHEMGVIAYQNHNYTVAENCFME 205 (342)
Q Consensus 145 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~ 205 (342)
.+..+..+..++.+.+.++.+++..+.+++..+.+ . ..|..+-..+...|+|++|...+..
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 11234456677888899999999999998866433 2 2566777778889999999877643
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.54 E-value=0.19 Score=39.23 Aligned_cols=59 Identities=8% Similarity=0.092 Sum_probs=48.5
Q ss_pred HHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213 (342)
Q Consensus 155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 213 (342)
...+.|+.++|+......++.+|.+......+..++.-.|+|+.|.+-++.+.+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 35667788888888888888888888888888888888888888888888888888876
No 249
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.54 E-value=0.19 Score=47.19 Aligned_cols=61 Identities=10% Similarity=-0.057 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701 149 ALYVGLECGLTNNARLASKFFDLALSI----AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSK 209 (342)
Q Consensus 149 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 209 (342)
+..+-..+.+.|+.++|...|.+..+. ..-+...|+.+-..+.+.|+.++|.+.|++..+.
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~ 194 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 444555566666666666666543321 1225666666666666666666666666666543
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.36 Score=41.32 Aligned_cols=191 Identities=9% Similarity=-0.038 Sum_probs=120.7
Q ss_pred hCChHHHHHHHHHHhh---c---CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH---Hh-hhC
Q psy3701 91 IGRSDPARRFLGKATS---L---DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE---CG-LTN 160 (342)
Q Consensus 91 ~~~~~~A~~~~~~a~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~---~~-~~~ 160 (342)
.|+++.|++.+...-+ . .+....+...+..++...|+++...+.+.-..........+...+... +. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 4788888887643322 1 233466778888899999999988887765555443333332222221 11 112
Q ss_pred CHHHHHHHHHHHHhh----CCC-------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHh
Q psy3701 161 NARLASKFFDLALSI----AHE-------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNL 229 (342)
Q Consensus 161 ~~~~A~~~~~~~~~~----~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 229 (342)
..+.. .....+.. ..+ ...+...++.++...|++.+|...+.....-.-...
T Consensus 109 ~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~--------------- 171 (445)
T 4b4t_P 109 SLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSM--------------- 171 (445)
T ss_dssp TTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS---------------
T ss_pred chhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc---------------
Confidence 21211 11111111 111 234567899999999999999999998764322110
Q ss_pred hhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hCCCch----HHHHHHHHHHHHhCChHH
Q psy3701 230 GHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV---VAPMKA----STFCCIGYIQALTGDLDS 302 (342)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~----~~~~~l~~~~~~~g~~~~ 302 (342)
......+.+.....++...+++.+|...++++.. ..+..+ ..+...|.++...++|.+
T Consensus 172 ---------------~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~ 236 (445)
T 4b4t_P 172 ---------------EMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLE 236 (445)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred ---------------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 0011146777888999999999999999998743 223332 456778999999999999
Q ss_pred HHHHHHHHHhc
Q psy3701 303 AVNYFHKTMAL 313 (342)
Q Consensus 303 A~~~~~~al~~ 313 (342)
|-.+|..+...
T Consensus 237 a~~~y~e~~~~ 247 (445)
T 4b4t_P 237 VAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 251
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.44 E-value=0.1 Score=48.97 Aligned_cols=98 Identities=7% Similarity=-0.124 Sum_probs=77.9
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHHHhcc----CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC-CCChHHHHHHH
Q psy3701 113 PAWLMYGHSFAVENEHDQAMAAYFNAFNL----FKGCHLPALYVGLECGLTNNARLASKFFDLALSIA-HEDPFVIHEMG 187 (342)
Q Consensus 113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 187 (342)
..+..+...+++.|+.++|...+.+..+. ...+...|..+...+.+.|+.++|.++|++..+.. .-+...++.+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45788889999999999999999775432 22346778888889999999999999999987643 22677788888
Q ss_pred HHHHHhcCh-hHHHHHHHHHHHhh
Q psy3701 188 VIAYQNHNY-TVAENCFMEALSKV 210 (342)
Q Consensus 188 ~~~~~~~~~-~~A~~~~~~al~~~ 210 (342)
.++.+.|+. ++|..+|++..+..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcC
Confidence 888888885 67889999887754
No 252
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.35 E-value=0.024 Score=49.00 Aligned_cols=79 Identities=8% Similarity=-0.023 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701 80 AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL 158 (342)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 158 (342)
.+..+|.+......++.|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++...+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5566788888888888999999999999999999999999998888888889988888888776677777776665543
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.057 Score=46.06 Aligned_cols=106 Identities=12% Similarity=0.067 Sum_probs=78.8
Q ss_pred CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccc
Q psy3701 145 CHLPALYVGLECGLTNNARLASKFFDLALSIAHE---DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK 221 (342)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 221 (342)
...++..+|..+...|++++|.+.|.++...... ..+.+.....++...+++..+...+.++-......+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~------- 202 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG------- 202 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC-------
Confidence 4457788999999999999999999998875433 246778888899999999999999999876644332
Q ss_pred hhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701 222 WEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 280 (342)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 280 (342)
............|.++...++|.+|...|-.++...
T Consensus 203 -----------------------d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 203 -----------------------DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp -----------------------CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred -----------------------CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 000012344455777778899999999998887654
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.09 E-value=0.1 Score=43.80 Aligned_cols=59 Identities=5% Similarity=-0.156 Sum_probs=53.1
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701 151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSK 209 (342)
Q Consensus 151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 209 (342)
.++..+...|++.+++..+.+++..+|-+..++..+..++...|+..+|+..|+++.+.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35666778899999999999999999999999999999999999999999999988664
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.03 E-value=0.35 Score=46.91 Aligned_cols=144 Identities=12% Similarity=0.003 Sum_probs=95.7
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH
Q psy3701 149 ALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN 228 (342)
Q Consensus 149 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 228 (342)
...+...+...+.++-+.+ .....|.++...+.+|.++...|++++|..+|+++-.--.... .. ...
T Consensus 815 ~~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~----~l--~~~--- 881 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHT----SQ--FAV--- 881 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCC----CS--CSS---
T ss_pred HHHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccc----hh--hhh---
Confidence 3345556677777776654 4456788888889999999999999999999998743211110 00 000
Q ss_pred hhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch-----HHHHHHHHHHHHhCChHHH
Q psy3701 229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA-----STFCCIGYIQALTGDLDSA 303 (342)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~l~~~~~~~g~~~~A 303 (342)
....................|..+..++.+.|.++.++++.+.|++..+.+. ..|..+-..+...|+|++|
T Consensus 882 ----~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 882 ----LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp ----HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred ----hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 0000000111112233355677788889999999999999999998764332 2577788888999999999
Q ss_pred HHHHHH
Q psy3701 304 VNYFHK 309 (342)
Q Consensus 304 ~~~~~~ 309 (342)
...+..
T Consensus 958 y~aL~~ 963 (1139)
T 4fhn_B 958 HVALMV 963 (1139)
T ss_dssp GHHHHH
T ss_pred HHHHHh
Confidence 877643
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.68 Score=39.61 Aligned_cols=197 Identities=9% Similarity=-0.107 Sum_probs=117.5
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhH
Q psy3701 45 LENRALAADCYKGALLADLFKLAHELV---DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHS 121 (342)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~a~~~~~~~~---~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 121 (342)
.|++..|++.+... ++-. ...+....+...+...++..++++...+.+.-..........+-..+...
T Consensus 29 ~~~~~~a~e~ll~l---------EK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~ 99 (445)
T 4b4t_P 29 QNDCNSALDQLLVL---------EKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQK 99 (445)
T ss_dssp HHHHHHHHHHHHHH---------HHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH---------HHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 46777777765431 1111 12344577888899999999999988877765554443333332222221
Q ss_pred H---H-hhccHHH--HHHHHHHHhccCCCC-------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCC--CC----hHH
Q psy3701 122 F---A-VENEHDQ--AMAAYFNAFNLFKGC-------HLPALYVGLECGLTNNARLASKFFDLALSIAH--ED----PFV 182 (342)
Q Consensus 122 ~---~-~~g~~~~--A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~ 182 (342)
. . .....+. -+...........+. ......++.++...|++.+|...+.....-.- .+ .++
T Consensus 100 ~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~ 179 (445)
T 4b4t_P 100 VMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQF 179 (445)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 1 1 1111111 111111111111111 12335689999999999999999998764221 11 356
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262 (342)
Q Consensus 183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (342)
+.....++...+++.+|...+.++....-..+. .+......+...|..+..
T Consensus 180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~-----------------------------~~~lk~~~~~~~~~~~~~ 230 (445)
T 4b4t_P 180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPK-----------------------------YESLKLEYYNLLVKISLH 230 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC-----------------------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC-----------------------------cHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999997542221110 000013456667888888
Q ss_pred hhhHHHHHHHHHHHHhh
Q psy3701 263 LKKYEEALEFHKQALVV 279 (342)
Q Consensus 263 ~g~~~~A~~~~~~al~~ 279 (342)
.++|.+|-.+|..++..
T Consensus 231 e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 231 KREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhc
Confidence 88888888888887653
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.13 Score=43.80 Aligned_cols=102 Identities=12% Similarity=-0.027 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV 259 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (342)
..++..+|..+...|++++|.+.|.++........ ...+.+..+..+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~---------------------------------~kid~~l~~irl 177 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG---------------------------------AKIDVMLTIARL 177 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC---------------------------------SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH---------------------------------HHHHHHHHHHHH
Confidence 45678999999999999999999999887655442 235788888899
Q ss_pred HHHhhhHHHHHHHHHHHHhhCC--Cch----HHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701 260 NRKLKKYEEALEFHKQALVVAP--MKA----STFCCIGYIQALTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 260 ~~~~g~~~~A~~~~~~al~~~~--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 314 (342)
+...+++..+...+.++-.... .++ ......|.++...++|.+|...|-.+....
T Consensus 178 ~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 178 GFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 9999999999999999865422 222 234456777888999999999998887653
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.06 Score=46.37 Aligned_cols=138 Identities=12% Similarity=0.007 Sum_probs=60.2
Q ss_pred HhhhCCHHHHHHHHHHHHh-----------hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhh
Q psy3701 156 CGLTNNARLASKFFDLALS-----------IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEP 224 (342)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 224 (342)
+...+++++|.++....+. +++-...+|+..+.++...|+.............+-|.-
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~L----------- 214 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTM----------- 214 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHH-----------
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHH-----------
Confidence 5566788888777665541 122345567777777777776655332222222111110
Q ss_pred HHHHhhhhHHHHHHHhch---hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-------hHHHHHHHHHH
Q psy3701 225 LLNNLGHKAEDKVKQLGG---EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-------ASTFCCIGYIQ 294 (342)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~ 294 (342)
+..++. .......+.++..+-..|...+.++.|..+..++. .|.. ...++.+|.++
T Consensus 215 ------------l~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~ 280 (523)
T 4b4t_S 215 ------------MKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKIN 280 (523)
T ss_dssp ------------HHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHH
Confidence 000000 00122235677888889999999999999999984 3422 34567789999
Q ss_pred HHhCChHHHHHHHHHHHhcccCch
Q psy3701 295 ALTGDLDSAVNYFHKTMALKRDDS 318 (342)
Q Consensus 295 ~~~g~~~~A~~~~~~al~~~p~~~ 318 (342)
.-.++|.+|.+++..|+...|.+.
T Consensus 281 a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 281 AIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHhccHHHHHHHHHHHHHhCCcch
Confidence 999999999999999999888654
No 259
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.01 E-value=1.7 Score=40.79 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC------cH----HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC--c
Q psy3701 79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKL------FL----PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC--H 146 (342)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~ 146 (342)
-+++.+|.++...+ +++...+...+..+.. .. .+-..+|.++.-.++ +++.+.+...+..+... .
T Consensus 414 GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~ 490 (963)
T 4ady_A 414 GSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGE 490 (963)
T ss_dssp HHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHH
Confidence 34555555554444 3566666665543220 11 234456666655554 35555666655533211 1
Q ss_pred hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHH
Q psy3701 147 LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEA 206 (342)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 206 (342)
.+-+.+|.++.-.|+-+-....+..+.+...++......+|..+...|+.+.+....+..
T Consensus 491 ~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L 550 (963)
T 4ady_A 491 AAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKM 550 (963)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHH
T ss_pred HHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Confidence 233346666666676665555555554433222222233344444556666555554443
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.055 Score=46.59 Aligned_cols=143 Identities=13% Similarity=0.023 Sum_probs=57.0
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHH----------HHHHH
Q psy3701 34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR----------RFLGK 103 (342)
Q Consensus 34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~----------~~~~~ 103 (342)
++.+.-..+...+++++|.++-......+-+..+.+ -..++-.+.+|+..+.++...|+..... ..+-.
T Consensus 138 ~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nr-rtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~ 216 (523)
T 4b4t_S 138 MHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNL-RSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMK 216 (523)
T ss_dssp ------------------------------------------------------------------CHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhH-HhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHH
Confidence 333344445567778877776654321111110100 1234556778888888888777765432 12222
Q ss_pred Hh-----hcCCC-cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC-------chHHHHHHHHHhhhCCHHHHHHHHH
Q psy3701 104 AT-----SLDKL-FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC-------HLPALYVGLECGLTNNARLASKFFD 170 (342)
Q Consensus 104 a~-----~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~ 170 (342)
++ ..++. ....+..+-+.|...+.++.|..+..++. .|.. ...++++|.++...++|.+|.+++.
T Consensus 217 ~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~ 294 (523)
T 4b4t_S 217 FLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYII 294 (523)
T ss_dssp HHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 22 22332 24567788899999999999999999985 4432 2334568999999999999999999
Q ss_pred HHHhhCCCC
Q psy3701 171 LALSIAHED 179 (342)
Q Consensus 171 ~~~~~~~~~ 179 (342)
.++...|.+
T Consensus 295 ~A~rkap~~ 303 (523)
T 4b4t_S 295 AAIRKAPHN 303 (523)
T ss_dssp HHTSSCSCS
T ss_pred HHHHhCCcc
Confidence 999988754
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.79 E-value=6.9 Score=35.02 Aligned_cols=210 Identities=8% Similarity=-0.146 Sum_probs=126.6
Q ss_pred HHHHHHHhCChHHHHHHHHHHhhcCCCcHH----HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh
Q psy3701 84 VGCYYYLIGRSDPARRFLGKATSLDKLFLP----AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT 159 (342)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 159 (342)
.+.......+.+.|...+.+.....+-+.. .+..++.-....+...++...+.+.....+++. ..-..+....+.
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~ 298 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGT 298 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHC
Confidence 355555666889999998776543222222 233344444445545677777777655444333 333444455677
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHH
Q psy3701 160 NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQ 239 (342)
Q Consensus 160 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (342)
|+++.|...|+++-...+..+...+-+|..+...|+.++|..+|+++... .+ ...+ .+...+|....
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~--~~-----fYg~-lAa~~Lg~~~~----- 365 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ--RG-----FYPM-VAAQRIGEEYE----- 365 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CS-----HHHH-HHHHHTTCCCC-----
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CC-----hHHH-HHHHHcCCCCC-----
Confidence 99999999998876544456778899999999999999999999998752 22 0000 01111111000
Q ss_pred hchhccCC-CC----hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701 240 LGGEIIAD-KW----EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHK 309 (342)
Q Consensus 240 ~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 309 (342)
.......+ .. ...-...+..+...|....|...+....... +..-...++.+....|.++.++....+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 366 LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 00000001 01 1123456677889999999999888877642 234455678888888888887765543
No 262
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.89 E-value=2.8e-06 Score=71.36 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=21.4
Q ss_pred HHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701 293 IQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ 330 (342)
Q Consensus 293 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 330 (342)
.|...|-+++-+..++.++.+..-+.....-|+-++.+
T Consensus 238 ~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 238 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp SSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 34455555555666666665555555555555555544
No 263
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=89.60 E-value=11 Score=35.95 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=42.4
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHH
Q psy3701 151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEAL 207 (342)
Q Consensus 151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 207 (342)
.+...+...|.++-+ .+.+...|.++..-+.+|.++...|++++|..+|+++-
T Consensus 815 ~l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 355556667777654 34567788888888999999999999999999999874
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.16 E-value=10 Score=30.46 Aligned_cols=62 Identities=10% Similarity=-0.050 Sum_probs=40.7
Q ss_pred CCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHh---CChHHHHHHHHHH
Q psy3701 246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALT---GDLDSAVNYFHKT 310 (342)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a 310 (342)
....+..+..+|..+.+.|++.+|..+|-.. +.+++..+..+-.-+... |...++--+.-++
T Consensus 130 ~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra 194 (312)
T 2wpv_A 130 KFGDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL 194 (312)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 4567889999999999999999999988521 112444444443333444 7666665555554
No 265
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=83.54 E-value=4.5e-05 Score=64.28 Aligned_cols=175 Identities=13% Similarity=0.075 Sum_probs=116.4
Q ss_pred CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701 76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE 155 (342)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 155 (342)
+.+.+|..+|.++...++..+|++.|-++ .+|+ .+.....+..+.|.+++=+.+++.+.+.. ..+..-..+..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS---SYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC---SSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccHHHHHHH
Confidence 45677888888888888888888877654 2333 34444555567788888777777666553 334455567777
Q ss_pred HhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701 156 CGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED 235 (342)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (342)
|.+.++..+-.+.+ ..|+... ....|.-++..|.|+.|.-+|..+
T Consensus 126 yAk~~rL~elEefl-----~~~N~A~-iq~VGDrcf~e~lYeAAKilys~i----------------------------- 170 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-----NGPNNAH-IQQVGDRCYDEKMYDAAKLLYNNV----------------------------- 170 (624)
T ss_dssp HHTSCSSSTTTSTT-----SCCSSSC-THHHHHHHHHSCCSTTSSTTGGGS-----------------------------
T ss_pred HHhhCcHHHHHHHH-----cCCCccc-HHHHHHHHHHccCHHHHHHHHHhC-----------------------------
Confidence 77777766533322 1233322 356777778888887776655321
Q ss_pred HHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701 236 KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311 (342)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 311 (342)
.-|..|+.++..+|+|+.|++.-++| +++.+|-..-.++...+++.-|.-+--..+
T Consensus 171 ---------------sN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniI 226 (624)
T 3lvg_A 171 ---------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV 226 (624)
T ss_dssp ---------------CCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH
T ss_pred ---------------ccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhc
Confidence 23345778888899999998876664 667788888888888888888776654443
No 266
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=83.50 E-value=6.8 Score=27.09 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=43.3
Q ss_pred HHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 259 VNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 259 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
.+..+|+-++-.+.+...+...+-+++.+..+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3456677777777777766666777999999999999999999999999988765
No 267
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=83.10 E-value=3.9 Score=24.59 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=13.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCC
Q psy3701 255 NLGHVNRKLKKYEEALEFHKQALVVAPM 282 (342)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~ 282 (342)
.+|..+...|++++|..+|-+|+...|+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3444445555555555555555554443
No 268
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.24 E-value=13 Score=35.39 Aligned_cols=94 Identities=11% Similarity=-0.088 Sum_probs=58.5
Q ss_pred HHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc---------------------C
Q psy3701 84 VGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL---------------------F 142 (342)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------------~ 142 (342)
+...+...|.++-+. ..+...|.++..-+.+|+++...|++++|..+|+++-.- .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 444555555555332 344455555555666777777777777777777655421 0
Q ss_pred CC--CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC-CCChH
Q psy3701 143 KG--CHLPALYVGLECGLTNNARLASKFFDLALSIA-HEDPF 181 (342)
Q Consensus 143 ~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 181 (342)
+. ....|..+..++...+-++-+++..+.|+... ++++.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 11 11245567888889999999999999999754 44544
No 269
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=78.12 E-value=7.7 Score=23.31 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701 288 CCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326 (342)
Q Consensus 288 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 326 (342)
..+|..+...|++++|..+|-+|+...|+-......+.+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 458999999999999999999999999977665555443
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.82 E-value=17 Score=26.95 Aligned_cols=64 Identities=5% Similarity=-0.103 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhh--cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATS--LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF 142 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 142 (342)
...|...+..+ ..++..++...|.-... +....+..|...|..+...|++.+|...|+.+++..
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34444444433 12223455555544433 333445555556666666666666666666665543
No 271
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=72.26 E-value=22 Score=24.70 Aligned_cols=51 Identities=8% Similarity=-0.054 Sum_probs=21.9
Q ss_pred hhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701 124 VENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALS 174 (342)
Q Consensus 124 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 174 (342)
.+|.-++-.+.+...+...+-++..+..+|.+|.+.|+..+|.+.+.++-+
T Consensus 103 ~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 103 IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 334444444444443333333344444444555555555555444444443
No 272
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=71.96 E-value=6.9 Score=24.92 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCchH
Q psy3701 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 285 (342)
Q Consensus 254 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 285 (342)
..+|..+...|+++.|+.+|-+|+...|+-..
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45777777777788888877777777665443
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.89 E-value=37 Score=27.27 Aligned_cols=66 Identities=14% Similarity=-0.047 Sum_probs=37.0
Q ss_pred CCchHHHHHHHHHhhhCCHHHHHHHHHHHH---------------hh----CCCChHHHHHHHH-HHHHhcChhHHHHHH
Q psy3701 144 GCHLPALYVGLECGLTNNARLASKFFDLAL---------------SI----AHEDPFVIHEMGV-IAYQNHNYTVAENCF 203 (342)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------------~~----~~~~~~~~~~l~~-~~~~~~~~~~A~~~~ 203 (342)
+++..+..+|..+...|++.+|..+|-..- .. .|.....+...+. .|...|+...|...+
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~ 211 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESK 211 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 456677777777777777777777664211 01 1122233333332 345667777777777
Q ss_pred HHHHHh
Q psy3701 204 MEALSK 209 (342)
Q Consensus 204 ~~al~~ 209 (342)
+...+.
T Consensus 212 ~~f~~~ 217 (312)
T 2wpv_A 212 DIFLER 217 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 274
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=70.76 E-value=16 Score=22.58 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=27.5
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3701 33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYP 75 (342)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p 75 (342)
..+...|...-..|++++|+.+|.+++ ..+..++...|
T Consensus 20 i~lv~~Ave~D~~g~y~eAl~lY~~ai-----e~l~~alk~e~ 57 (83)
T 2w2u_A 20 RKYAINAVKADKEGNAEEAITNYKKAI-----EVLAQLVSLYR 57 (83)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHHHST
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH-----HHHHHHHHHCC
Confidence 344457777888999999999999975 55555555544
No 275
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=69.33 E-value=15 Score=27.37 Aligned_cols=35 Identities=11% Similarity=0.033 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 284 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 284 (342)
....+.+|.++...++|.+|.+.+..|+...|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 46788899999999999999999999999988654
No 276
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=68.74 E-value=10 Score=23.84 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALV 278 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 278 (342)
+..+...+..+...|+|++|+++.+++..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45666788888999999999988877653
No 277
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=68.00 E-value=30 Score=24.62 Aligned_cols=61 Identities=10% Similarity=0.014 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc---hHHH------HHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMK---ASTF------CCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~------~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
-+.-|..++..|+|=+|-+.++......+.. ...+ ...|....+.|+..-|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456677788899999999999998876544 2222 33344556889999999999999763
No 278
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=67.91 E-value=10 Score=23.84 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701 285 STFCCIGYIQALTGDLDSAVNYFHKTM 311 (342)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~al 311 (342)
..+...+..+...|+|++|+++.+++.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345567888889999999988777765
No 279
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=67.90 E-value=19 Score=22.25 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=27.3
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy3701 34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD 76 (342)
Q Consensus 34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~ 76 (342)
-+...|...-..|+|++|+.+|.+++ ..+..++...|+
T Consensus 13 ~lv~~Ave~D~~g~y~eAl~lY~~ai-----e~l~~~lk~e~d 50 (83)
T 2v6y_A 13 KYAILAVKADKEGKVEDAITYYKKAI-----EVLSQIIVLYPE 50 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH-----HHHHHHHHHCCC
Confidence 34457777788899999999999874 556666655543
No 280
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=67.55 E-value=13 Score=27.66 Aligned_cols=35 Identities=17% Similarity=-0.029 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH
Q psy3701 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL 112 (342)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 112 (342)
....+.+|..++..++|.+|.+.+..|+...|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 44567788888888888888888888888777543
No 281
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=65.92 E-value=21 Score=22.19 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=31.0
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS 77 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~ 77 (342)
.+..+...|.-.-..|+|++|+.+|.+++ ..+..++...|+.
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Ai-----e~ll~alk~e~d~ 56 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGI-----DLLLQVLKGTKDN 56 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHhhCCCH
Confidence 34444557777788999999999999974 6666677766654
No 282
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=64.11 E-value=13 Score=23.64 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701 288 CCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML 324 (342)
Q Consensus 288 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 324 (342)
..+|..+...|+++.|+.+|-+|+...|.-......+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~ 60 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 60 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4578888899999999999999999888655444433
No 283
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=62.98 E-value=51 Score=27.01 Aligned_cols=30 Identities=30% Similarity=0.143 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVV 279 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 279 (342)
.--|..+|..+.+.+++.+|+..+-.+-..
T Consensus 296 vYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 296 IYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 456777888999999999999999887653
No 284
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=62.86 E-value=63 Score=26.53 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=56.6
Q ss_pred HHHHHhchhccCCCChHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHhCChHHHHHHH
Q psy3701 235 DKVKQLGGEIIADKWEPLLNNLGHVNRKL--KKYEEALEFHKQALVVA-----PMKASTFCCIGYIQALTGDLDSAVNYF 307 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 307 (342)
+.+..+........++.++.+||.+-... .....++..|.+++... ..+...+..+|-.+.+.+++.+|+..+
T Consensus 240 ~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~W 319 (472)
T 3re2_A 240 ELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASW 319 (472)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHH
Confidence 33333444444555666777777654322 12223777888877642 345566778899999999999999999
Q ss_pred HHHHhc------ccCchhHHhHH
Q psy3701 308 HKTMAL------KRDDSFATTML 324 (342)
Q Consensus 308 ~~al~~------~p~~~~~~~~l 324 (342)
..+-.. ..+|.+++..+
T Consensus 320 A~Aa~Vi~~YNY~reDeEIYKEf 342 (472)
T 3re2_A 320 VDAGYVAGKYNYSKDDEEMYKEF 342 (472)
T ss_dssp HHHHHHHTTSCCCGGGHHHHHHH
T ss_pred HHHHHHHHHcCCCccHHHHHHHH
Confidence 887543 34455555444
No 285
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=62.34 E-value=24 Score=30.17 Aligned_cols=65 Identities=11% Similarity=0.081 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCC--C--------chHHHHHHHHHHHHhCChHHHHHHHHHHHhc-ccCc
Q psy3701 253 LNNLGHVNRKLKKYEEALEFHKQALVVAP--M--------KASTFCCIGYIQALTGDLDSAVNYFHKTMAL-KRDD 317 (342)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~ 317 (342)
...+-.+|.+.++..-+...++..-...+ . .....+.+|..+...+++.+|.+.+..|+.. .|.+
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 34455788899999888888765543322 1 1346788999999999999999999999998 7765
No 286
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=61.93 E-value=22 Score=32.11 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcCC
Q psy3701 286 TFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESP 336 (342)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 336 (342)
.....|......|++.-|.+....++..+|++..++..++.++++++-...
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 344566666777888888888888888888888888888888877765543
No 287
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=61.88 E-value=40 Score=23.96 Aligned_cols=61 Identities=7% Similarity=-0.142 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHH------hhhHHHhhccHHHHHHHHHHHhcc
Q psy3701 81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLM------YGHSFAVENEHDQAMAAYFNAFNL 141 (342)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~------la~~~~~~g~~~~A~~~~~~al~~ 141 (342)
-+.-|..++..|+|=+|-+.++.+....+.. ...|.. .|......|+...|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3556677777888888888888887765443 122222 222345566777777777766653
No 288
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=61.42 E-value=22 Score=30.40 Aligned_cols=64 Identities=11% Similarity=0.201 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcC--------CC--cHHHHHHhhhHHHhhccHHHHHHHHHHHhcc-CCCC
Q psy3701 82 YAVGCYYYLIGRSDPARRFLGKATSLD--------KL--FLPAWLMYGHSFAVENEHDQAMAAYFNAFNL-FKGC 145 (342)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~ 145 (342)
..+-.+|++.++..-+...++..-... |. .....+.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 344578999999999998886543322 11 1346788999999999999999999999988 7754
No 289
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=60.95 E-value=12 Score=22.85 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=15.5
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701 288 CCIGYIQALTGDLDSAVNYFHKTMA 312 (342)
Q Consensus 288 ~~l~~~~~~~g~~~~A~~~~~~al~ 312 (342)
..+|+=+...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3456666666666666666666654
No 290
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=60.87 E-value=11 Score=22.97 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701 81 WYAVGCYYYLIGRSDPARRFLGKATSL 107 (342)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~ 107 (342)
...+|+-+...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 356788888889999999998887653
No 291
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=56.95 E-value=21 Score=22.05 Aligned_cols=26 Identities=23% Similarity=0.041 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701 253 LNNLGHVNRKLKKYEEALEFHKQALV 278 (342)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~al~ 278 (342)
+...|.-.-..|++++|+.+|..+++
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555556666666666655543
No 292
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=54.29 E-value=97 Score=26.03 Aligned_cols=91 Identities=10% Similarity=0.071 Sum_probs=56.3
Q ss_pred HHHHHhchhccCCCChHHHHHHHHHHHHhh--hHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHhCChHHHHHHH
Q psy3701 235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLK--KYEEALEFHKQALVV-----APMKASTFCCIGYIQALTGDLDSAVNYF 307 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 307 (342)
+.+..+........++.++.+||.+-...- .-..++..|.+++.. ...+...|..+|-.+.+.+++.+|+..+
T Consensus 262 ~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~W 341 (550)
T 3u84_A 262 KLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAW 341 (550)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhccchhhCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHH
Confidence 344444444445555666667766543221 112367777777754 2345566778899999999999999999
Q ss_pred HHHHhc------ccCchhHHhHHH
Q psy3701 308 HKTMAL------KRDDSFATTMLS 325 (342)
Q Consensus 308 ~~al~~------~p~~~~~~~~l~ 325 (342)
..+-.. ..+|.+++..+-
T Consensus 342 A~Aa~Vi~~YNY~reDeEIYKEf~ 365 (550)
T 3u84_A 342 ADTATVIQDYNYCREDEEIYKEFF 365 (550)
T ss_dssp HHHHHHHTTSCCCGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCCcchHHHHHHHH
Confidence 887543 345555555443
No 293
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.66 E-value=66 Score=23.87 Aligned_cols=64 Identities=5% Similarity=-0.161 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVV--APMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 314 (342)
..+|...+..+ ..+...++...|.-.... ....+..|...|..+...|++.+|...|+..++..
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 45555555543 123355677777766654 34556677777888888888888888888888764
No 294
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=52.77 E-value=26 Score=21.56 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALV 278 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 278 (342)
-+...|.-.-+.|++++|+.+|..+++
T Consensus 13 ~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 13 KYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555666666666666666554
No 295
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=50.95 E-value=1.7e+02 Score=27.85 Aligned_cols=170 Identities=14% Similarity=0.036 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701 28 SEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLY----PDSAIAWYAVGCYYYLIGRSDPARRFLGK 103 (342)
Q Consensus 28 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 103 (342)
+......++.+|.++...++ +++..+...+...- ...-+ .-...+-..+|.++...++ +++...+..
T Consensus 409 ~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~------~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~ 479 (963)
T 4ady_A 409 RFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENS------GTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKE 479 (963)
T ss_dssp HHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHS------SCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCcc------ccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHH
Confidence 45667777788888776664 56665555432210 00000 1112345577777776665 566777777
Q ss_pred HhhcCCCcH--HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChH
Q psy3701 104 ATSLDKLFL--PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPF 181 (342)
Q Consensus 104 a~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 181 (342)
.+..+.... .+-+.+|.++.-.|+-+-....+..+.+...+...-...+|..+...|+.+.+....+..... .++.
T Consensus 480 ~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~ 557 (963)
T 4ady_A 480 VLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESL 557 (963)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHH
T ss_pred HHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHH
Confidence 766443222 345567888888888766666666665533222111222444455667777666666655432 2443
Q ss_pred HH----HHHHHHHHHhcChhHHHHHHHHHHH
Q psy3701 182 VI----HEMGVIAYQNHNYTVAENCFMEALS 208 (342)
Q Consensus 182 ~~----~~l~~~~~~~~~~~~A~~~~~~al~ 208 (342)
+. ..+|..|...|+...-...+..+..
T Consensus 558 vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 558 LRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 33 3456667778885444446655553
No 296
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=48.97 E-value=33 Score=21.33 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALV 278 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 278 (342)
.+...|.-.-..|++++|+.+|..+++
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455556677888888877777765
No 297
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=48.90 E-value=1.2e+02 Score=25.51 Aligned_cols=91 Identities=11% Similarity=0.082 Sum_probs=58.3
Q ss_pred HHHHHhchhccCCCChHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHhCChHHHHHHH
Q psy3701 235 DKVKQLGGEIIADKWEPLLNNLGHVNRKL--KKYEEALEFHKQALVVA-----PMKASTFCCIGYIQALTGDLDSAVNYF 307 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 307 (342)
+.+..+........++.++.+||.+-.-. .....++..|++++... ..+...|..+|-.+.+.+++.+|+..+
T Consensus 247 ~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~w 326 (489)
T 4gq4_A 247 KLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAW 326 (489)
T ss_dssp HHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhccchhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHh
Confidence 34444444445556677777777765422 11234667777777642 344566778899999999999999999
Q ss_pred HHHHhc------ccCchhHHhHHH
Q psy3701 308 HKTMAL------KRDDSFATTMLS 325 (342)
Q Consensus 308 ~~al~~------~p~~~~~~~~l~ 325 (342)
..+-.. ..+|.+.+..+-
T Consensus 327 a~aa~Vi~~YnY~reDeEiYke~~ 350 (489)
T 4gq4_A 327 ADTATVIQDYNYCREDEEIYKEFF 350 (489)
T ss_dssp HHHHHHHTTSCCCTTCHHHHHHHH
T ss_pred hhhhhhhhhcccccchHHHHHHHH
Confidence 887542 455566665543
No 298
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.48 E-value=16 Score=24.19 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHhhC
Q psy3701 265 KYEEALEFHKQALVVA 280 (342)
Q Consensus 265 ~~~~A~~~~~~al~~~ 280 (342)
.+++|..+..++|+.+
T Consensus 18 ~h~~AF~~Is~AL~~D 33 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTD 33 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3455555555555544
No 299
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=45.18 E-value=1.2e+02 Score=24.57 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=11.6
Q ss_pred ChHHHHHHHHHHHHhcChhHHHHHH
Q psy3701 179 DPFVIHEMGVIAYQNHNYTVAENCF 203 (342)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~A~~~~ 203 (342)
++..+..+|..+.+.+++.+|..+|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4444444444444444444444443
No 300
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=45.01 E-value=69 Score=21.64 Aligned_cols=78 Identities=15% Similarity=0.067 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH---HhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC--chhHHhHHHH
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQA---LVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD--DSFATTMLSY 326 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~a---l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 326 (342)
.+..-..++...++.+..+..++.. ++..|... ...+....--.+..+|.+++++..+.... -..+|..+..
T Consensus 42 ~LeeASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~---~E~sF~~~fG~~L~~A~~~~~~y~~t~d~~~lnqAWd~Y~~ 118 (126)
T 2npu_A 42 GLEEASRLYFGERNVKGMFEVLEPLHAMMERGPQTL---KETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYH 118 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHccCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Confidence 3334556777888999998888766 44455443 22222333334567888888887643221 2367777777
Q ss_pred HHHHhh
Q psy3701 327 VIEQLI 332 (342)
Q Consensus 327 ~~~~~~ 332 (342)
++.+..
T Consensus 119 Vf~rI~ 124 (126)
T 2npu_A 119 VFRRIS 124 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776654
No 301
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=44.89 E-value=52 Score=20.21 Aligned_cols=40 Identities=13% Similarity=0.036 Sum_probs=28.2
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy3701 33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS 77 (342)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~ 77 (342)
..+...|.-.-..|++++|+.+|..++ .++..++...|+.
T Consensus 14 ~~l~~~Av~~D~~g~y~eAl~~Y~~ai-----e~l~~a~k~e~~~ 53 (85)
T 2v6x_A 14 IELVQKAIDLDTATQYEEAYTAYYNGL-----DYLMLALKYEKNP 53 (85)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHhCCCH
Confidence 334456666778899999999999964 6666666655543
No 302
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=43.61 E-value=47 Score=30.01 Aligned_cols=45 Identities=7% Similarity=-0.091 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc
Q psy3701 82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN 126 (342)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 126 (342)
...|...+..|+|.-|.+..+.++..+|++..+...++.++.++|
T Consensus 453 ~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 453 LEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555554444
No 303
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=43.23 E-value=71 Score=21.23 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=27.7
Q ss_pred HHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q psy3701 35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSA 78 (342)
Q Consensus 35 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~ 78 (342)
+...|.-.-..|+|++|+.+|..++ .++..+++..+.+.
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Ai-----e~l~~alk~e~~~~ 59 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAV-----QYFLHVVKYEAQGD 59 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-----HHHHHHHHTSCCCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH-----HHHHHHHHhccCCH
Confidence 3446666677899999999999864 66777776654333
No 304
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=42.33 E-value=46 Score=21.01 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALV 278 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 278 (342)
.+...|.-.-..|+|++|+.+|..+++
T Consensus 17 ~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 17 AVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345556666677777777777777665
No 305
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=42.23 E-value=61 Score=20.19 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=18.2
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHH
Q psy3701 31 KSALLLLKGRVYEALENRALAADCYKGA 58 (342)
Q Consensus 31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 58 (342)
++......|.-+...++|.+|..+|+++
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~ 79 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKA 79 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4445555666667777777777777764
No 306
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=42.14 E-value=63 Score=20.35 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=29.2
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q psy3701 34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSA 78 (342)
Q Consensus 34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~ 78 (342)
.+...|.-.-..|+|++|+.+|..++ ..+..++...|+..
T Consensus 17 ~lv~~Ave~D~~g~y~eAl~~Y~~Ai-----e~l~~alk~e~~~~ 56 (93)
T 1wfd_A 17 AVLKRAVELDAESRYQQALVCYQEGI-----DMLLQVLKGTKESS 56 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH-----HHHHHHHHHCCCHH
Confidence 33456777788899999999999864 66777777665543
No 307
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.24 E-value=1.5e+02 Score=24.58 Aligned_cols=28 Identities=7% Similarity=0.041 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701 182 VIHEMGVIAYQNHNYTVAENCFMEALSK 209 (342)
Q Consensus 182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 209 (342)
+...++..+...|+.++|...++++-..
T Consensus 129 i~~~i~~~yl~~~d~~~a~~~l~~~~~~ 156 (393)
T 4b4t_O 129 IDSEIARTYLLKNDLVKARDLLDDLEKT 156 (393)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4556677777788888888777777544
No 308
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=39.86 E-value=70 Score=20.22 Aligned_cols=56 Identities=14% Similarity=0.023 Sum_probs=41.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCch-H-----HHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKA-S-----TFCCIGYIQALTGDLDSAVNYFHKTMA 312 (342)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~-----~~~~l~~~~~~~g~~~~A~~~~~~al~ 312 (342)
..|..++..|+|=+|-+.++......|+.. . +....|....+.|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 356677788999999999999998886532 1 223344555677888 9999999876
No 309
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=39.15 E-value=37 Score=25.44 Aligned_cols=45 Identities=16% Similarity=-0.001 Sum_probs=34.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCCh
Q psy3701 256 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDL 300 (342)
Q Consensus 256 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 300 (342)
...++++.|.|++|.+.+++.+..++.+......|..+-.+...+
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~ 164 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLA 164 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcc
Confidence 345668899999999999999988777666666777666555543
No 310
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=38.78 E-value=53 Score=21.85 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701 252 LLNNLGHVNRKLKKYEEALEFHKQALV 278 (342)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 278 (342)
.+...|.-.-..|+|++|+.+|..+++
T Consensus 20 ~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 20 DLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344455555666777777777777665
No 311
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=38.60 E-value=1.8e+02 Score=24.54 Aligned_cols=30 Identities=17% Similarity=0.043 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVV 279 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 279 (342)
.--|..+|-.+++.+++.+|+..+-.+-..
T Consensus 318 vYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 318 IYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 456777899999999999999999887653
No 312
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=34.80 E-value=35 Score=25.18 Aligned_cols=44 Identities=11% Similarity=-0.056 Sum_probs=28.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCC
Q psy3701 256 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGD 299 (342)
Q Consensus 256 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 299 (342)
...++++.|.+++|.+.+++....++.+......|..+-.+...
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~ 166 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDT 166 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCT
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCC
Confidence 44567899999999999999988777766665555555444433
No 313
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=34.26 E-value=40 Score=24.86 Aligned_cols=40 Identities=13% Similarity=0.080 Sum_probs=26.8
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701 289 CIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI 328 (342)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 328 (342)
..-.++.+.|.+++|.+.+++...-+|++......|..+.
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II 161 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII 161 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3456788999999999999999888777766555555444
No 314
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=33.30 E-value=1.3e+02 Score=21.32 Aligned_cols=84 Identities=8% Similarity=0.126 Sum_probs=45.1
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChH-HHHHHHHHHhhc--CCCcHH
Q psy3701 37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSD-PARRFLGKATSL--DKLFLP 113 (342)
Q Consensus 37 ~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~--~~~~~~ 113 (342)
..+...+-..+|.+.+..++.- ....-....-+.+|..|....++. +-.......+.+ +|....
T Consensus 13 i~a~~afl~~dYs~VI~~L~~~-------------~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL~ 79 (161)
T 2ynq_A 13 IQSTELFLQNKYSDVITTLEDY-------------APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYML 79 (161)
T ss_dssp HHHHHHHTTTCHHHHHHHHTTS-------------CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhcC-------------ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHHH
Confidence 3455556667777777776663 222223566777777777776654 233333333322 222223
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHHH
Q psy3701 114 AWLMYGHSFAVENEHDQAMAAYFNA 138 (342)
Q Consensus 114 ~~~~la~~~~~~g~~~~A~~~~~~a 138 (342)
.| ++.-+|++++|+..-+..
T Consensus 80 YW-----IyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 80 YW-----IYIGRSQSEEALELARTI 99 (161)
T ss_dssp HH-----HHHHHTCHHHHHHHHHHH
T ss_pred HH-----HHHcCCchHHHHHHHHhc
Confidence 33 444467777777765544
No 315
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=33.22 E-value=2.2e+02 Score=24.01 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhh------CCCchHHHHHH
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVV------APMKASTFCCI 290 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~l 290 (342)
.--|..+|-.+.+.+++.+|+..+-++-.. ..++.+++..+
T Consensus 303 vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~ 349 (489)
T 4gq4_A 303 IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEF 349 (489)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHH
T ss_pred ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHH
Confidence 456777899999999999999999988653 23445555443
No 316
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.49 E-value=1.8e+02 Score=22.02 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhh--CCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701 267 EEALEFHKQALVV--APMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314 (342)
Q Consensus 267 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 314 (342)
+++...|.-.... ....+..|...|..+...|++.+|...|+..++..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3556666666554 34566777788888888899999999998888764
No 317
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.30 E-value=1.5e+02 Score=21.12 Aligned_cols=31 Identities=3% Similarity=0.064 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA 280 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 280 (342)
+..|...|..+...|++.+|.+.|+..++..
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 5566666666667777777777777776654
No 318
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=28.24 E-value=1.5e+02 Score=25.28 Aligned_cols=30 Identities=10% Similarity=0.016 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVV 279 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 279 (342)
..++..++.+|...|++++|....++++..
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 457778899999999999999999988853
No 319
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=28.16 E-value=1.2e+02 Score=19.20 Aligned_cols=59 Identities=5% Similarity=-0.117 Sum_probs=37.9
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHhhCCCCh-H-----HHHHHHHHHHHhcChhHHHHHHHHHHHhhh
Q psy3701 151 YVGLECGLTNNARLASKFFDLALSIAHEDP-F-----VIHEMGVIAYQNHNYTVAENCFMEALSKVK 211 (342)
Q Consensus 151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-----~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 211 (342)
..|..+...|+|=+|-+.++..-...|+.. . +....|..+...|+. |...+.+++..-.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~ 70 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLE 70 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHT
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHH
Confidence 345556666888888888887777665421 1 122334455567777 8899999887443
No 320
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.42 E-value=2e+02 Score=21.65 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=30.9
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701 290 IGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE 329 (342)
Q Consensus 290 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 329 (342)
.-.++.+.|.+++|.+.+++...-+|++......|..+..
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~ 159 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIR 159 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Confidence 4456788999999999999999987777666666655544
No 321
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=26.94 E-value=1.9e+02 Score=24.54 Aligned_cols=30 Identities=10% Similarity=0.006 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 284 ASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
..++..++++|..+|++++|..+.++++..
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 457788999999999999999999999863
No 322
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.85 E-value=2.7e+02 Score=23.07 Aligned_cols=89 Identities=11% Similarity=-0.027 Sum_probs=50.3
Q ss_pred HHHhhccHHHHHHHHHHHhccC-------C------C--Cc--hHHHHHHHHHhhhCCHHHHHHHHHHHHhh---CC-CC
Q psy3701 121 SFAVENEHDQAMAAYFNAFNLF-------K------G--CH--LPALYVGLECGLTNNARLASKFFDLALSI---AH-ED 179 (342)
Q Consensus 121 ~~~~~g~~~~A~~~~~~al~~~-------~------~--~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~-~~ 179 (342)
+.....+.++|++.+++..... + . .. .....++..|...|+.++|...++++-.. .+ -+
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 4445556677777766553321 0 0 11 22334667777788888888877776532 11 11
Q ss_pred ----hHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701 180 ----PFVIHEMGVIAYQNHNYTVAENCFMEALSK 209 (342)
Q Consensus 180 ----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 209 (342)
...+...+..+...+++..+....-..+..
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 223445566666777777766666665553
No 323
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=26.62 E-value=1.6e+02 Score=25.02 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVV 279 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 279 (342)
..++..+|.+|...|++++|....++++..
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 457778899999999999999999998863
No 324
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=26.33 E-value=1.9e+02 Score=24.93 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSK 209 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 209 (342)
..++..+|++|+..++|++|....++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 456788999999999999999999998864
No 325
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=24.83 E-value=2.1e+02 Score=24.30 Aligned_cols=30 Identities=7% Similarity=0.144 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 284 ASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
..++..+|++|..+|++++|....++++..
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 457888999999999999999999999863
No 326
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=24.47 E-value=1.3e+02 Score=18.70 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=15.0
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 288 CCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 288 ~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
..-|.-+.+.+++.+|...|+++..+
T Consensus 57 i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 57 IAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 33444455666666666666666543
No 327
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=24.44 E-value=2.2e+02 Score=24.57 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701 284 ASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313 (342)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 313 (342)
..++..+|++|+.+|++++|..+.++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 356777888888889999999888888764
No 328
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=29.59 E-value=17 Score=32.96 Aligned_cols=51 Identities=16% Similarity=-0.014 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcCCC
Q psy3701 287 FCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPP 337 (342)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 337 (342)
....+.-....|++.-|.+....++..+|++..++..++.++++++....+
T Consensus 464 ~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 464 VLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 344566677889999999999999999999999999999999988765543
No 329
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=22.84 E-value=2.4e+02 Score=24.13 Aligned_cols=30 Identities=7% Similarity=-0.003 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSK 209 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 209 (342)
..++..+|++|...|+|++|....++++..
T Consensus 202 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 202 WAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 356788999999999999999999999875
No 330
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.58 E-value=3e+02 Score=22.12 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=16.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhCCC
Q psy3701 258 HVNRKLKKYEEALEFHKQALVVAPM 282 (342)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~al~~~~~ 282 (342)
...++.++|..|..+.++.+++.|.
T Consensus 206 ~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 206 NLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3345667777777777777777654
No 331
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.47 E-value=2.5e+02 Score=21.16 Aligned_cols=29 Identities=7% Similarity=0.073 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q psy3701 180 PFVIHEMGVIAYQNHNYTVAENCFMEALS 208 (342)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 208 (342)
+..|...|..+...|++.+|...|+..++
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444444444444
No 332
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=22.29 E-value=1.9e+02 Score=24.80 Aligned_cols=30 Identities=13% Similarity=0.126 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVV 279 (342)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 279 (342)
..++..+|.+|...|++++|....++++..
T Consensus 202 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 202 WAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 457788999999999999999999999864
No 333
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=20.41 E-value=1.2e+02 Score=18.59 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHhhCCCchHHHH
Q psy3701 264 KKYEEALEFHKQALVVAPMKASTFC 288 (342)
Q Consensus 264 g~~~~A~~~~~~al~~~~~~~~~~~ 288 (342)
+...+++..-.++++.+|++|..+.
T Consensus 24 ~~~~~~v~~Ai~~L~~~PsnPa~LA 48 (85)
T 2ca5_A 24 QTLQGELTLALDKLAKNPSNPQLLA 48 (85)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 4555566666666777888876543
No 334
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=20.10 E-value=1.6e+02 Score=19.03 Aligned_cols=32 Identities=16% Similarity=-0.022 Sum_probs=24.1
Q ss_pred CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q psy3701 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKAT 105 (342)
Q Consensus 74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 105 (342)
+..++.....-+.-..+.|+|++|...++++-
T Consensus 16 ~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 16 YAGDARSKLLEALKAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34566667777777888899999988887763
Done!