RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3701
(342 letters)
>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat.
Length = 78
Score = 45.1 bits (107), Expect = 2e-06
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVA-------PMKASTFCCIGYIQALTGDLDSAV 304
LNNL V R+L Y+EALE ++AL +A P A + + GD D A+
Sbjct: 7 ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEAL 66
Query: 305 NYFHKTMALKRD 316
Y K +AL+
Sbjct: 67 EYLEKALALREA 78
Score = 37.0 bits (86), Expect = 0.001
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG 92
A L V L + A + + AL +LA EL + +P++A A + Y +G
Sbjct: 6 AALNNLALVLRRLGDYDEALELLEKAL-----ELARELGEDHPETARALNNLARLYLALG 60
Query: 93 RSDPARRFLGKATSLDK 109
D A +L KA +L +
Sbjct: 61 DYDEALEYLEKALALRE 77
Score = 31.6 bits (72), Expect = 0.094
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 29/94 (30%)
Query: 184 HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGE 243
+ + ++ + +Y A +AL L LG + +
Sbjct: 9 NNLALVLRRLGDYDEALELLEKALE----------------LARELGEDHPETAR----- 47
Query: 244 IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 277
LNNL + L Y+EALE+ ++AL
Sbjct: 48 --------ALNNLARLYLALGDYDEALEYLEKAL 73
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found
in a variety of organisms including bacteria,
cyanobacteria, yeast, fungi, plants, and humans in
various subcellular locations; involved in a variety of
functions including protein-protein interactions, but
common features in the interaction partners have not
been defined; involved in chaperone, cell-cycle,
transciption, and protein transport complexes; the
number of TPR motifs varies among proteins (1,3-11,13
15,16,19); 5-6 tandem repeats generate a right-handed
helical structure with an amphipathic channel that is
thought to accomodate an alpha-helix of a target
protein; it has been proposed that TPR proteins
preferably interact with WD-40 repeat proteins, but in
many instances several TPR-proteins seem to aggregate to
multi-protein complexes; examples of TPR-proteins
include, Cdc16p, Cdc23p and Cdc27p components of the
cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal
targeting signals, the Tom70p co-receptor for
mitochondrial targeting signals, Ser/Thr phosphatase 5C
and the p110 subunit of O-GlcNAc transferase; three
copies of the repeat are present here.
Length = 100
Score = 44.3 bits (105), Expect = 5e-06
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
L NLG++ KL Y+EALE++++AL + P A + + G + A+ + K +
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 312 ALKRDDSFA 320
L D++ A
Sbjct: 62 ELDPDNAKA 70
Score = 41.6 bits (98), Expect = 4e-05
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR 93
LL G +Y L + A + Y+ AL +L PD+A A+Y + YY +G+
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKAL------------ELDPDNADAYYNLAAAYYKLGK 49
Query: 94 SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
+ A KA LD A+ G ++ ++++A+ AY
Sbjct: 50 YEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91
Score = 40.8 bits (96), Expect = 8e-05
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 245 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAV 304
+ NL KL KYEEALE +++AL + P A + +G G + A+
Sbjct: 29 LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEAL 88
Query: 305 NYFHKTMALKRD 316
+ K + L +
Sbjct: 89 EAYEKALELDPN 100
Score = 30.4 bits (69), Expect = 0.38
Identities = 21/96 (21%), Positives = 37/96 (38%)
Query: 80 AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAF 139
A +G YY +G D A + KA LD A+ ++ ++++A+ Y A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 140 NLFKGCHLPALYVGLECGLTNNARLASKFFDLALSI 175
L +GL A + ++ AL +
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97
Score = 29.7 bits (67), Expect = 0.74
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 36/113 (31%)
Query: 165 ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEP 224
A ++++ AL + ++ + + Y+ Y A + +AL
Sbjct: 19 ALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE---------------- 62
Query: 225 LLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 277
+ NLG KL KYEEALE +++AL
Sbjct: 63 --------------------LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95
Score = 29.3 bits (66), Expect = 0.91
Identities = 17/95 (17%), Positives = 36/95 (37%)
Query: 114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLAL 173
A L G+ + ++D+A+ Y A L + A + ++ AL
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 174 SIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208
+ ++ + +G+ Y+ Y A + +AL
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 43.1 bits (101), Expect = 2e-04
Identities = 55/293 (18%), Positives = 107/293 (36%), Gaps = 23/293 (7%)
Query: 61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGH 120
A F+ A +L L AIA G + L G+ A L K+ LD +++
Sbjct: 314 ARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI-KRA 372
Query: 121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYV--GLECGLTNNARLASKFFDLALSIAHE 178
S +E F+ L P +Y + A K + ++ + +
Sbjct: 373 SMNLELGDPDKAEEDFDK-ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431
Query: 179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSK------VKQLGGEIIAD--KWEPLLN--N 228
F ++GV Y+ + + F V GE++ D K++ + +
Sbjct: 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491
Query: 229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 288
+ E + K + ++ PL+N + + + + EA ++AL++ P
Sbjct: 492 TAIELEKETKPMYMNVL-----PLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546
Query: 289 CIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV----IEQLIEESPP 337
+ + GD+D A+ F + L R + +SY + ++E P
Sbjct: 547 TMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQEDYP 599
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 43.1 bits (102), Expect = 2e-04
Identities = 59/286 (20%), Positives = 101/286 (35%), Gaps = 46/286 (16%)
Query: 66 LAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE 125
+ +E D PDS AW +G G + A K +L A L+ ++AV
Sbjct: 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM 648
Query: 126 NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAH-------E 178
+ +A+ + A L + GL LA+K + A IA +
Sbjct: 649 KNYAKAITSLKRALELKPD------NTEAQIGLAQLL-LAAKRTESAKKIAKSLQKQHPK 701
Query: 179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSK------VKQLGGEIIADKWEP-----LLN 227
G + + +Y A + +AL + +L ++A L
Sbjct: 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEA 761
Query: 228 NLGHKAEDKVKQ--LGGEIIADKWE------------------PLLNNLGHVNRKLKKYE 267
L D V + L +A K +LNNL + +LK
Sbjct: 762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-P 820
Query: 268 EALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
ALE+ ++AL +AP + +G++ G+ D A+ K + +
Sbjct: 821 RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866
Score = 38.5 bits (90), Expect = 0.004
Identities = 67/309 (21%), Positives = 99/309 (32%), Gaps = 30/309 (9%)
Query: 24 SQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYA 83
+ L E + LL L+G Y L LA Y+ AL D P S A
Sbjct: 117 TLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID------------PRSLYAKLG 164
Query: 84 VGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK 143
+ R D AR + + + D + A L+ G + A+AAY A L
Sbjct: 165 LAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP 224
Query: 144 GCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCF 203
L + A K D L A P + ++ +Q NY A
Sbjct: 225 NNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETL 284
Query: 204 MEALSK------VKQLGG--EIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNN 255
+AL L G E E +K A +
Sbjct: 285 QDALKSAPEYLPALLLAGASEYQLGNLE----QAYQYLNQILKYAPNSHQARRL------ 334
Query: 256 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR 315
L + +L + +EA+ AL + P + +G GD + A Y K L
Sbjct: 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394
Query: 316 DDSFATTML 324
+++ A T L
Sbjct: 395 ENAAARTQL 403
Score = 32.4 bits (74), Expect = 0.40
Identities = 71/327 (21%), Positives = 114/327 (34%), Gaps = 54/327 (16%)
Query: 35 LLLKGRVYEALENRALAADCYKGALLADLF----------------------KLAHELVD 72
LLLKG + +L N LA Y+ A+ K A L+
Sbjct: 196 LLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK 255
Query: 73 LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAM 132
P+S +A Y + + AR L A +LPA L+ G S +QA
Sbjct: 256 KAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAY 315
Query: 133 AAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAH-------EDPFVIHE 185
Y N + P + L + +L D A++ +DP +
Sbjct: 316 -QYLNQILK----YAPNSHQARR--LLASIQLRLGRVDEAIATLSPALGLDPDDPAALSL 368
Query: 186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH-KAEDKVKQLGGEI 244
+G ++ A E L+K +L E A + + ++ L + + L E
Sbjct: 369 LGEAYLALGDFEKAA----EYLAKATELDPENAAARTQLGISKLSQGDPSEAIADL--ET 422
Query: 245 IADKWEPLLNNLGHVNR-------KLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALT 297
A L LG + + ++++AL K+ P AS +G I
Sbjct: 423 AAQ----LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK 478
Query: 298 GDLDSAVNYFHKTMALKRDDSFATTML 324
GDL A F K ++++ D A L
Sbjct: 479 GDLAKAREAFEKALSIEPDFFPAAANL 505
Score = 28.5 bits (64), Expect = 5.9
Identities = 80/318 (25%), Positives = 123/318 (38%), Gaps = 27/318 (8%)
Query: 30 MKSALLLLKGRVYEALE--NRALAADCYKGALLADL---------FKLAHELVD----LY 74
+ +++ L GRV EA+ + AL D A L+ L F+ A E + L
Sbjct: 334 LLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD 393
Query: 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134
P++A A +G G A L A LD A L+ S+ + D+A+AA
Sbjct: 394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA 453
Query: 135 YFNAFNLFKGC-HLPALYVGLECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAY 191
A L K +L+ L L A + F+ ALSI + + I
Sbjct: 454 ---AKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI 510
Query: 192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADK--W 249
Q N A F + L+ + I+A L G++ E L +
Sbjct: 511 QEGNPDDAIQRFEKVLTIDPKNLRAILA--LAGLYLRTGNEEEAVAW-LEKAAELNPQEI 567
Query: 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHK 309
EP L L + ++AL +A AP + +G Q GDL+ AV+ F K
Sbjct: 568 EPALA-LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626
Query: 310 TMALKRDDSFATTMLSYV 327
+AL+ D + A +L+
Sbjct: 627 LLALQPDSALALLLLADA 644
>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats. Repeats present in 4
or more copies in proteins. Contain a minimum of 34
amino acids each and self-associate via a "knobs and
holes" mechanism.
Length = 34
Score = 36.3 bits (85), Expect = 8e-04
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAP 281
L NLG+ KL Y+EALE++++AL + P
Sbjct: 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32
Score = 25.9 bits (58), Expect = 3.4
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 284 ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD 317
A +G GD D A+ Y+ K + L ++
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat.
Length = 34
Score = 35.5 bits (83), Expect = 0.002
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAP 281
L NLG+ KL KY+EALE++++AL + P
Sbjct: 4 LYNLGNAYLKLGKYDEALEYYEKALELNP 32
>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat.
Length = 69
Score = 34.2 bits (79), Expect = 0.009
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG-DLDSAVNYFHKT 310
L NLG+ KL Y+EA+E +++AL + P A + + G D + A+ K
Sbjct: 5 ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK- 63
Query: 311 MALKRD 316
AL+ D
Sbjct: 64 -ALELD 68
Score = 30.7 bits (70), Expect = 0.14
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 13/80 (16%)
Query: 31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVG-CYYY 89
+ L G L + A + Y+ AL +L PD+A A+Y + Y
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKAL------------ELDPDNAEAYYNLALAYLK 49
Query: 90 LIGRSDPARRFLGKATSLDK 109
L + A L KA LD
Sbjct: 50 LGKDYEEALEDLEKALELDP 69
Score = 29.2 bits (66), Expect = 0.61
Identities = 12/62 (19%), Positives = 21/62 (33%)
Query: 76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
D+A A +G + +G D A KA LD A+ ++ + +
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 136 FN 137
Sbjct: 61 LE 62
Score = 26.9 bits (60), Expect = 3.9
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 37/105 (35%)
Query: 178 EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKV 237
++ + +G ++ +Y A + +AL
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALE----------------------------- 31
Query: 238 KQLGGEIIADKWEPLLNNLGHVNRKL-KKYEEALEFHKQALVVAP 281
+ NL KL K YEEALE ++AL + P
Sbjct: 32 -------LDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
>gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat.
Length = 42
Score = 31.4 bits (72), Expect = 0.046
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQAL 277
LNNL R +YEEA E ++AL
Sbjct: 5 LNNLARALRAQGRYEEAEELLEEAL 29
>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only].
Length = 291
Score = 33.7 bits (75), Expect = 0.11
Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 5/208 (2%)
Query: 114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARL--ASKFFDL 171
L+ + ++A+ A L +L + L L + A + +
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 172 ALSIAHEDPFVIHEMGVIAYQN-HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG 230
AL++ + + + A +Y A + +AL +L A L
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180
Query: 231 HKAEDKVKQLGG--EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 288
+ E+ ++ L ++ D L NLG + KL KYEEALE++++AL + P A
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALY 240
Query: 289 CIGYIQALTGDLDSAVNYFHKTMALKRD 316
+ + G + A+ K + L D
Sbjct: 241 NLALLLLELGRYEEALEALEKALELDPD 268
>gnl|CDD|221958 pfam13176, TPR_7, Tetratricopeptide repeat.
Length = 36
Score = 29.5 bits (67), Expect = 0.18
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVA 280
L+NLG + RKL YE+A+ +++AL +A
Sbjct: 1 ALSNLGRLYRKLGDYEKAISLYERALALA 29
>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response
chaperone LcrH/SycD. Genes in this family are found in
type III secretion operons. LcrH, from Yersinia is
believed to have a regulatory function in the
low-calcium response of the secretion system. The same
protein is also known as SycD (SYC = Specific Yop
Chaperone) for its chaperone role. In Pseudomonas, where
the homolog is known as PcrH, the chaperone role has
been demonstrated and the regulatory role appears to be
absent. ScyD/LcrH contains three central
tetratricopeptide-like repeats that are predicted to
fold into an all-alpha-helical array.
Length = 135
Score = 31.9 bits (73), Expect = 0.19
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 57 GALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR---RFLGKATSLDKLFLP 113
GA L DL L E ++ YA+ Y GR D A + L + +
Sbjct: 3 GATLKDLLGLDSEQLE-------QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRY-- 53
Query: 114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT-NNARLASKFFDLA 172
WL + E+++A+ AY A L P + EC L A K DLA
Sbjct: 54 -WLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA-ECLLALGEPESALKALDLA 111
Query: 173 LSIAHEDP 180
+ I E+P
Sbjct: 112 IEICGENP 119
>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat. This Pfam entry
includes outlying Tetratricopeptide-like repeats (TPR)
that are not matched by pfam00515.
Length = 34
Score = 29.0 bits (66), Expect = 0.27
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
L NLG KL YEEALE +++AL + P
Sbjct: 3 ALYNLGLAYYKLGDYEEALEAYEKALELDP 32
>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR
repeats [Intracellular trafficking and secretion].
Length = 257
Score = 32.0 bits (73), Expect = 0.38
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVN 305
WE N LG +L +++EA ++QAL +AP + S +G L GDL+ A
Sbjct: 131 PTDWEAW-NLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET 189
Query: 306 YFHKTMALKRDDS 318
DS
Sbjct: 190 LLLPAYLSPAADS 202
Score = 28.2 bits (63), Expect = 6.0
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 65 KLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLD 108
+ + L P AW +G +GR D ARR +A L
Sbjct: 121 SVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA 164
>gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat)
[General function prediction only].
Length = 287
Score = 31.3 bits (71), Expect = 0.66
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
E A E + QAL +AP A+ + +G G+ D+A + + + L +D
Sbjct: 11 AEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65
>gnl|CDD|131186 TIGR02131, phaP_Bmeg, polyhydroxyalkanoic acid inclusion protein
PhaP. This model describes a protein found in
polyhydroxyalkanoic acid (PHA) gene regions and
incorporated into PHA inclusions in Bacillus cereus and
Bacillus megaterium. The role of the protein may include
amino acid storage (see McCool,G.J. and Cannon,M.C,
1999).
Length = 165
Score = 29.7 bits (66), Expect = 1.3
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 205 EALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK 264
+AL K + G + + + + L + +K D +K+L G +AD+ E +
Sbjct: 44 DALHKATE-GLDALDKELKAELADFNNKTTDNLKKLAGNALADQIEEWQD---------- 92
Query: 265 KYEEALEFHKQALVVAPMKAS 285
K EAL H L P K+S
Sbjct: 93 KTHEALA-HLHELFFNPSKSS 112
>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat.
Length = 65
Score = 28.0 bits (63), Expect = 1.4
Identities = 14/73 (19%), Positives = 20/73 (27%), Gaps = 12/73 (16%)
Query: 36 LLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSD 95
L R + A + + YP +A A +G GR
Sbjct: 1 LALARAALRAGDYDEALAALE------------AALARYPLAAEALLLLGEALLRQGRLA 48
Query: 96 PARRFLGKATSLD 108
A L A + D
Sbjct: 49 EAAALLRAALAAD 61
>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 250
Score = 29.7 bits (67), Expect = 1.7
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVA--PMKASTFCCIGYIQALTGDLDSAVNYFHK 309
+LNN G + EEA++ ++AL + T +G G D A Y +
Sbjct: 105 VLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164
Query: 310 TMALKRD 316
+ L
Sbjct: 165 ALELDPQ 171
>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR
repeats [General function prediction only].
Length = 484
Score = 30.1 bits (68), Expect = 1.7
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 19/107 (17%)
Query: 29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYY 88
E+ +LL + EA+E + + L P+S + +
Sbjct: 344 ELAGDILLEANKAKEAIE-------------------RLKKALALDPNSPLLQLNLAQAL 384
Query: 89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
G+ A R L + D W + ++A +A+ A
Sbjct: 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431
Score = 28.1 bits (63), Expect = 7.3
Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 5/95 (5%)
Query: 28 SEMKSALLLLKGR---VYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAV 84
++A LL K A RAL Y + KL L+ PD+
Sbjct: 289 PNQQAADLLAKRSKRGGLAAQYGRALQT--YLAGQYDEALKLLQPLIAAQPDNPYYLELA 346
Query: 85 GCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYG 119
G ++ A L KA +LD L
Sbjct: 347 GDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381
>gnl|CDD|183698 PRK12715, flgK, flagellar hook-associated protein FlgK;
Provisional.
Length = 649
Score = 30.1 bits (67), Expect = 2.0
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 229 LGHKAEDKVKQLGGEIIADKWEPLLNNL-GHVNRKLKKYEEALEFHKQAL 277
LG+ ++K+ G E + D++ LL + G N+ +E A HKQAL
Sbjct: 553 LGNIQQNKIFSNGSETLFDRYGSLLAEVGGRTNQAKTSFESADILHKQAL 602
>gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3;
Provisional.
Length = 172
Score = 28.9 bits (65), Expect = 3.0
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 266 YEEALEFHKQALVV---APMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
Y EALE +++AL + ++ +G I A G+ D A+ Y+H+ + L
Sbjct: 51 YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101
>gnl|CDD|233302 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit.
The terms succinate dehydrogenase and fumarate reductase
may be used interchangeably in certain systems. However,
a number of species have distinct complexes, with the
fumarate reductase active under anaerobic conditions.
This model represents the fumarate reductase
flavoprotein subunit from several such species in which
a distinct succinate dehydrogenase is also found. Not
all bona fide fumarate reductases will be found by this
model.
Length = 580
Score = 29.5 bits (66), Expect = 3.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 279 VAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
V PM++ T G A+TGD DS +FH T++
Sbjct: 37 VYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVS 70
>gnl|CDD|236505 PRK09419, PRK09419, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 1163
Score = 29.0 bits (65), Expect = 4.6
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 12/57 (21%)
Query: 196 YTVAENCFM---------EALSKVKQLGG---EIIADKWEPLLNNLGHKAEDKVKQL 240
YTVA N FM A S G EI + + L N + K E +++++
Sbjct: 1090 YTVATNNFMGAGGDGYSFSAASNGVDTGLVDREIFTEYLKKLGNPVSPKIEGRIQEV 1146
>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat.
Length = 34
Score = 25.5 bits (57), Expect = 4.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQAL 277
LG + +L YEEA E++++AL
Sbjct: 3 AYYLLGQIYLQLGDYEEAKEYYEKAL 28
>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein
PilW. Members of this family are designated PilF in ref
(PMID:8973346) and PilW in ref (PMID:15612916). This
outer membrane protein is required both for pilus
stability and for pilus function such as adherence to
human cells. Members of this family contain copies of
the TPR (tetratricopeptide repeat) domain.
Length = 234
Score = 28.1 bits (63), Expect = 6.3
Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 26/163 (15%)
Query: 160 NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIA 219
+ +A + D AL +D + + Q AE+ F AL+ + G++
Sbjct: 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT-LNPNNGDV-- 101
Query: 220 DKWEPLLNNLG---------HKAEDK----VKQLGGEIIADKWEPLLNNLGHVNRKLKKY 266
LNN G +A + ++ A E N G K +
Sbjct: 102 ------LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLE----NAGLCALKAGDF 151
Query: 267 EEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHK 309
++A ++ +AL + P + + + + L G A Y +
Sbjct: 152 DKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194
>gnl|CDD|237080 PRK12370, PRK12370, invasion protein regulator; Provisional.
Length = 553
Score = 27.9 bits (62), Expect = 9.1
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 63 LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL-----FLPAWLM 117
LFK A+ L P SA Y G ++ G+ + A + + + LD W+
Sbjct: 360 LFKQANLLS---PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWIT 416
Query: 118 YGHS 121
Y H+
Sbjct: 417 YYHT 420
>gnl|CDD|178539 PLN02953, PLN02953, phosphatidate cytidylyltransferase.
Length = 403
Score = 27.7 bits (61), Expect = 9.2
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 139 FNLFKGCHLPALYVGLECGLTN---NARLASKFFDLALSIAHEDPFVI 183
F LF +LP +V L CGL N S F L SI P ++
Sbjct: 211 FGLFYCGYLPCFWVKLRCGLAAPALNTGKLSPFISLKFSIGKTWPILL 258
>gnl|CDD|236658 PRK10153, PRK10153, DNA-binding transcriptional activator CadC;
Provisional.
Length = 517
Score = 27.7 bits (62), Expect = 9.4
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 63 LFKLAHELVDLY-----PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLM 117
L L+ EL ++ + + + G++D A + + KA L+ +WL
Sbjct: 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM----SWLN 455
Query: 118 Y---GHSFAVENEHDQAMAAYFNAFNL 141
Y G + ++ ++ A AY AFNL
Sbjct: 456 YVLLGKVYELKGDNRLAADAYSTAFNL 482
>gnl|CDD|200557 cd10931, CE4_u7, Putative catalytic domain of uncharacterized
bacterial proteins from the carbohydrate esterase 4
superfamily. This family corresponds to a group of
uncharacterized bacterial proteins with high sequence
similarity to the catalytic domain of the six-stranded
barrel rhizobial NodB-like proteins, which remove
N-linked or O-linked acetyl groups from cell wall
polysaccharides and belong to the larger carbohydrate
esterase 4 (CE4) superfamily.
Length = 224
Score = 27.6 bits (62), Expect = 9.5
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 167 KFFDLALSIAH---EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIA 219
+F+DL E P VI + + Y+ N A + + +VK++GG
Sbjct: 145 RFYDLNTERQLPLLEHPLVIMDCTLFGYKYMNPEEALEEIKQLIDEVKKVGGVFTL 200
>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein
Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), plant MAP/ERK kinase
kinase 1 (MEKK1)-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The plant MEKK1 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of plant mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks)
including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1
is a MAPKKK that phosphorylates and activates MAPK
kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Arabidopsis thaliana
MEKK1 activates MPK4, a MAPK that regulates systemic
acquired resistance. MEKK1 also participates in the
regulation of temperature-sensitive and tissue-specific
cell death.
Length = 258
Score = 27.4 bits (61), Expect = 9.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 215 GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN 260
G+ A K L ++ G ++ VKQL EI LL+ L H N
Sbjct: 25 GDFFAVKEVSLADD-GQTGQEAVKQLEQEI------ALLSKLQHPN 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.422
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,697,416
Number of extensions: 1728939
Number of successful extensions: 1511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1485
Number of HSP's successfully gapped: 66
Length of query: 342
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 244
Effective length of database: 6,590,910
Effective search space: 1608182040
Effective search space used: 1608182040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)