RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3701
(342 letters)
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 216 bits (551), Expect = 4e-68
Identities = 151/282 (53%), Positives = 200/282 (70%), Gaps = 28/282 (9%)
Query: 60 LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR-SDPARRFLGKATSLDKLFLPAWLMY 118
+LF L+H+LVDLYP + ++W+AVGCYY ++G ++ ARR+L KAT+L+K + PAW+ Y
Sbjct: 72 ANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAY 131
Query: 119 GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHE 178
GHSFAVE+EHDQAMAAYF A L KGCHLP LY+GLE GLTNN++LA +FF ALSIA E
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE 191
Query: 179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVK 238
DPFV+HE+GV+A+QN + AE F++AL +K+K
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDAL---------------------------EKIK 224
Query: 239 QLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG 298
+G E+ DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P AST+ IGYI +L G
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284
Query: 299 DLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPG 340
+ ++AV+YFH + L+RDD+F+ TML + IE I +S + G
Sbjct: 285 NFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIG 326
Score = 60.4 bits (147), Expect = 2e-10
Identities = 29/262 (11%), Positives = 64/262 (24%), Gaps = 41/262 (15%)
Query: 69 ELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH 128
E VD ++ ++ +Y + D ++ + N+
Sbjct: 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKA 72
Query: 129 DQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARL---ASKFFDLALSIAHEDPFVIHE 185
++ +L+ P + + C A ++ A ++
Sbjct: 73 NELFYLSHKLVDLYP--SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIA 130
Query: 186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII 245
G + A + A L H
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQ-----------------LMKGCHLP------------ 161
Query: 246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVN 305
+ +G + A F QAL +AP +G + G+ +A
Sbjct: 162 -------MLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK 214
Query: 306 YFHKTMALKRDDSFATTMLSYV 327
+F + + T+ +
Sbjct: 215 WFLDALEKIKAIGNEVTVDKWE 236
Score = 44.2 bits (105), Expect = 3e-05
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 12/98 (12%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
G V L+ A A D ++ AL L P +A + A+G + L+G + A
Sbjct: 242 LGHVCRKLKKYAEALDYHRQAL------------VLIPQNASTYSAIGYIHSLMGNFENA 289
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
+ A L + + M GH + +A
Sbjct: 290 VDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 215 bits (548), Expect = 4e-65
Identities = 84/319 (26%), Positives = 143/319 (44%), Gaps = 51/319 (15%)
Query: 34 LLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELV 71
LLL K L L+ ++++LV
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366
Query: 72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQA 131
D +P+ A+ W AVG YY + + ARR+ K++++D F PAW+ + HSFA+E EHDQA
Sbjct: 367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426
Query: 132 MAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY 191
++AY A LF+G HLP L++G++ N LA+++ + ++ DP +++E+GV+A+
Sbjct: 427 ISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF 486
Query: 192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP 251
+ A N F AL VK+ W
Sbjct: 487 NKSDMQTAINHFQNALLLVKKTQSN-----------------------------EKPWAA 517
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
NLGH RKLK Y+ A++ Q L+++ A+ I + A+ + H+++
Sbjct: 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577
Query: 312 ALKRDDSFATTMLSYVIEQ 330
A+ ++ A+ +L +E+
Sbjct: 578 AISPNEIMASDLLKRALEE 596
Score = 70.3 bits (172), Expect = 2e-13
Identities = 33/293 (11%), Positives = 76/293 (25%), Gaps = 81/293 (27%)
Query: 29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYY 88
++++++ L+G+VY L N A +CYK AL + A+
Sbjct: 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEAL------------MVDAKCYEAFD------ 238
Query: 89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLP 148
L+ H + E D + ++ ++ L
Sbjct: 239 --------------------------QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272
Query: 149 ALY-VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEAL 207
+LY + L + ++ + +++ + ++ + + + L
Sbjct: 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332
Query: 208 SKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 267
I + + +
Sbjct: 333 E------------------------------------IDPYNLDVYPLHLASLHESGEKN 356
Query: 268 EALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
+ + P KA T+ +G + A YF K+ + A
Sbjct: 357 KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409
Score = 52.5 bits (126), Expect = 9e-08
Identities = 28/295 (9%), Positives = 66/295 (22%), Gaps = 29/295 (9%)
Query: 48 RALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYY---------------LIG 92
R D + +++D+ + A++ Y L
Sbjct: 88 RLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN 147
Query: 93 RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV 152
RS R + A + G + + A + +
Sbjct: 148 RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASM-CYLR 206
Query: 153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212
G +N A + + AL + D + + E + L+
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY 263
Query: 213 LGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPL-------LNNLGHVNRKLKK 265
+ + L L +L L +
Sbjct: 264 SKED---AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320
Query: 266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
+ + L + L + P + +G+ + + + + +
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 69.4 bits (170), Expect = 1e-14
Identities = 22/113 (19%), Positives = 37/113 (32%)
Query: 68 HELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE 127
L L D+ YA+G Y G+ D A++ LD +L G
Sbjct: 8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL 67
Query: 128 HDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
++QA+ +Y + + + A F A ++A P
Sbjct: 68 YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120
Score = 42.8 bits (101), Expect = 2e-05
Identities = 15/66 (22%), Positives = 24/66 (36%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
LG + L YE+AL+ + ++ + GDLD A + F+ A
Sbjct: 55 FLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114
Query: 313 LKRDDS 318
L
Sbjct: 115 LAAAQP 120
Score = 40.5 bits (95), Expect = 1e-04
Identities = 10/68 (14%), Positives = 26/68 (38%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
L LG + K+++A + + ++ A F +G + G + A+ +
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 313 LKRDDSFA 320
+ ++
Sbjct: 81 MDINEPRF 88
Score = 38.2 bits (89), Expect = 0.001
Identities = 16/108 (14%), Positives = 28/108 (25%)
Query: 101 LGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN 160
L L + L G + + D A + L L +G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208
A + + + +P Q + AE+ F A +
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 71.0 bits (175), Expect = 6e-14
Identities = 43/297 (14%), Positives = 92/297 (30%), Gaps = 36/297 (12%)
Query: 35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
LLL ++ +A A+ P A A+ +G Y G+
Sbjct: 36 LLLLSSIHFQCRRLDRSAHFSTLAI------------KQNPLLAEAYSNLGNVYKERGQL 83
Query: 95 DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
A A L F+ ++ + + + A+ AY +A L + L
Sbjct: 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP--DLYCVRSDL 141
Query: 155 ECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212
L RL A + A+ +G + +A + F +A++
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---- 197
Query: 213 LGGEIIADKWEPLLNNLGHKAEDKVKQLGG---------EIIADKWEPLLNNLGHVNRKL 263
+ + NLG + + + + NL V +
Sbjct: 198 -----LDPNFLDAYINLG-NVLKEARIFDRAVAAYLRALSLSPNHAVVH-GNLACVYYEQ 250
Query: 264 KKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
+ A++ +++A+ + P +C + G + A + ++ + L + +
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307
Score = 68.7 bits (169), Expect = 3e-13
Identities = 46/281 (16%), Positives = 102/281 (36%), Gaps = 22/281 (7%)
Query: 50 LAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK 109
LA Y+ + +L PD+ + ++ R D + F A +
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 110 LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARL--ASK 167
L A+ G+ + + +A+ Y +A L Y+ L L + A +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAVQ 122
Query: 168 FFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN 227
+ AL + V ++G + A+ C+++A+ + +
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE---------TQPNFAVAWS 173
Query: 228 NLGHKAEDKVKQLGGEI--------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 279
NLG + ++ I + + NLG+V ++ + ++ A+ + +AL +
Sbjct: 174 NLG-CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232
Query: 280 APMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
+P A + + G +D A++ + + + L+ A
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273
Score = 66.4 bits (163), Expect = 2e-12
Identities = 56/307 (18%), Positives = 103/307 (33%), Gaps = 40/307 (13%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
A + A Y AL PD +G +GR + A
Sbjct: 107 LAAALVAAGDMEGAVQAYVSAL------------QYNPDLYCVRSDLGNLLKALGRLEEA 154
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
+ KA F AW G F + E A+ + A L + Y+ L
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--NFLDAYINLGNV 212
Query: 158 LTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG 215
L A + ALS++ V + + Y+ +A + + A+
Sbjct: 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE------- 265
Query: 216 EIIADKWEPLLNNLG--HKAEDKVKQLGGEIIAD-----KWEP----LLNNLGHVNRKLK 264
+ + NL K + V E + P LNNL ++ R+
Sbjct: 266 --LQPHFPDAYCNLANALKEKGSVA----EAEDCYNTALRLCPTHADSLNNLANIKREQG 319
Query: 265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML 324
EEA+ +++AL V P A+ + + G L A+ ++ + + + + A + +
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379
Query: 325 SYVIEQL 331
++++
Sbjct: 380 GNTLKEM 386
Score = 66.4 bits (163), Expect = 2e-12
Identities = 44/293 (15%), Positives = 91/293 (31%), Gaps = 34/293 (11%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
G VY+ A + Y+ AL L PD + + G + A
Sbjct: 73 LGNVYKERGQLQEAIEHYRHAL------------RLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
+ A + G+ ++A A Y A + + L C
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP--NFAVAWSNLGCV 178
Query: 158 LTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG 215
+ A F+ A+++ +G + + + A ++ AL
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL-------- 230
Query: 216 EIIADKWEPLLNNLGHKAEDKVKQLGGEI--------IADKWEPLLNNLGHVNRKLKKYE 267
+ + NL + + I + + NL + ++
Sbjct: 231 SLSPNHAVVH-GNLAC-VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288
Query: 268 EALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
EA + + AL + P A + + I+ G+++ AV + K + + + + A
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341
Score = 57.9 bits (141), Expect = 1e-09
Identities = 30/240 (12%), Positives = 67/240 (27%), Gaps = 36/240 (15%)
Query: 81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFN 140
+ Y G + A R + + L+ D++ A
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 141 LFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAE 200
+G + A + + AL + + + + A
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 201 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN 260
++ AL + ++LG++
Sbjct: 122 QAYVSALQ------------------------------------YNPDLYCVRSDLGNLL 145
Query: 261 RKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
+ L + EEA + +A+ P A + +G + G++ A+++F K + L + A
Sbjct: 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 66.2 bits (162), Expect = 2e-12
Identities = 45/304 (14%), Positives = 81/304 (26%), Gaps = 51/304 (16%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
+G + A ++ A+ P AW +G + A
Sbjct: 70 EGLRRLQEGDLPNAVLLFEAAV------------QQDPKHMEAWQYLGTTQAENEQELLA 117
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
L + L A + SF E+ QA +
Sbjct: 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW------------------- 158
Query: 158 LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI 217
L A + + + + F+ A+ + I
Sbjct: 159 LRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV---RLDPTSI 215
Query: 218 IADKWEPLLNNLG---------HKAEDKVKQ-LGGEIIADKWEPLLNNLGHVNRKLKKYE 267
D LG KA D L + + + L N LG + E
Sbjct: 216 DPDVQ----CGLGVLFNLSGEYDKAVDCFTAAL--SVRPNDYL-LWNKLGATLANGNQSE 268
Query: 268 EALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327
EA+ +++AL + P + +G G AV +F + + ++R +
Sbjct: 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328
Query: 328 IEQL 331
E +
Sbjct: 329 SENI 332
Score = 52.0 bits (125), Expect = 1e-07
Identities = 47/295 (15%), Positives = 86/295 (29%), Gaps = 31/295 (10%)
Query: 22 WFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAW 81
++ +LQ+E++ + L + Y F+ + L D
Sbjct: 16 FWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQ---FEEENPLRD-----HPQP 67
Query: 82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141
+ G G A A D + AW G + A + A++A L
Sbjct: 68 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 127
Query: 142 FKGCHLPALYVGLECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVA 199
K + AL L TN + A + L
Sbjct: 128 -KPDNQTALM-ALAVSFTNESLQRQACEILRDWLRYTPAYA--------HLVTPAEEGAG 177
Query: 200 ENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV 259
+ + L + + + + L A V+ I D LG +
Sbjct: 178 GAGLGPSKRILGSLLSDSLFLEVKELFL----AA---VRLDPTSIDPDVQ----CGLGVL 226
Query: 260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
+Y++A++ AL V P + +G A + AV + + + L+
Sbjct: 227 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281
Score = 42.3 bits (100), Expect = 1e-04
Identities = 37/280 (13%), Positives = 63/280 (22%), Gaps = 64/280 (22%)
Query: 37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDP 96
G E LA + L +L PD+ A A+ +
Sbjct: 103 YLGTTQAENEQELLAISALRRCL------------ELKPDNQTALMALAVSFTNESLQRQ 150
Query: 97 ARRFLGKATSLDKLFLPAWLMYGHSFAVEN---------------EHDQAMAAYFNAFNL 141
A L + + + A L
Sbjct: 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 210
Query: 142 FKGCHLPALYVGLECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVA 199
P + GL + A F ALS+ D + +++G + A
Sbjct: 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270
Query: 200 ENCFMEALSKVKQLGGEIIADKWEPLLNNLG----------------------HKAEDKV 237
+ AL E+ NLG +
Sbjct: 271 VAAYRRAL--------ELQPGYIRSR-YNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321
Query: 238 KQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 277
+ GG + + W + L L + + + L
Sbjct: 322 RGEGGAMSENIW----STLRLALSMLGQSDAYGAADARDL 357
Score = 35.8 bits (83), Expect = 0.018
Identities = 13/70 (18%), Positives = 24/70 (34%)
Query: 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT 310
P G + A+ + A+ P + +G QA A++ +
Sbjct: 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 124
Query: 311 MALKRDDSFA 320
+ LK D+ A
Sbjct: 125 LELKPDNQTA 134
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 65.8 bits (161), Expect = 3e-12
Identities = 57/306 (18%), Positives = 104/306 (33%), Gaps = 57/306 (18%)
Query: 39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
G Y L + A +K L LA + D A + +G ++GR D A
Sbjct: 93 GNAYFYLGDYNKAMQYHKHDL-----TLAKSMNDR-LGEAKSSGNLGNTLKVMGRFDEAA 146
Query: 99 RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--KGCHLPALYVGLEC 156
+ +L + + + + A +N N++ KG HL G
Sbjct: 147 ICCERHLTLAR-------------QLGDRLSEG-RALYNLGNVYHAKGKHLGQRNPGKFG 192
Query: 157 GLTNNA-RLASKFFDLALSIAHE--DPFVI----HEMGVIAYQNHNYTVAENCFMEALSK 209
A A +F+ L + + D +G Y ++ A E L
Sbjct: 193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252
Query: 210 VKQLG---GEIIADKWEPLLNNLGH---------KAEDKVKQ-LG-GEIIADKWE--PLL 253
++ G E A +NLG+ A + K+ L + ++
Sbjct: 253 AREFGDRAAERRA------NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSC 306
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNYF 307
+LG+ L ++ A+E+H + L +A +A +G + G + A+ Y
Sbjct: 307 YSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366
Query: 308 HKTMAL 313
+ + L
Sbjct: 367 EQHLQL 372
Score = 56.2 bits (136), Expect = 5e-09
Identities = 41/245 (16%), Positives = 74/245 (30%), Gaps = 51/245 (20%)
Query: 119 GHSFAVENEHDQAMAAYFNAFNLFKGCH--LPALY--VGLECGLTNNARLASKFFDLALS 174
G + +A + A L A+Y +G + A ++ L+
Sbjct: 55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114
Query: 175 IAHE--DPFVI----HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI-IADKWEPLLN 227
+A D +G + A C L+ +QLG + L
Sbjct: 115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR----ALY 170
Query: 228 NLGHKAEDKVKQLGGEIIADKWEPL------------------------------LNNLG 257
NLG+ K K LG + + NLG
Sbjct: 171 NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLG 230
Query: 258 HVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
+ L ++ A+E H++ L +A + +G G + A ++ +T+
Sbjct: 231 NTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290
Query: 312 ALKRD 316
AL +
Sbjct: 291 ALAVE 295
Score = 52.7 bits (127), Expect = 6e-08
Identities = 24/181 (13%), Positives = 46/181 (25%), Gaps = 44/181 (24%)
Query: 147 LPALYVGLECGLTNNARLASKFFDLALSIAHEDP------FVIHEMGVIAYQNHNYTVAE 200
L A + + + D + G +
Sbjct: 9 LSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGV 68
Query: 201 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN 260
F A+ ED ++ + + LG+
Sbjct: 69 AFFQAAIQA----------------------GTEDL------RTLSA----IYSQLGNAY 96
Query: 261 RKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
L Y +A+++HK L +A +A + +G + G D A + + L
Sbjct: 97 FYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156
Query: 315 R 315
R
Sbjct: 157 R 157
Score = 50.8 bits (122), Expect = 3e-07
Identities = 51/274 (18%), Positives = 86/274 (31%), Gaps = 65/274 (23%)
Query: 39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
G + + AA C + L LA +L D A Y +G Y+ G+ R
Sbjct: 133 GNTLKVMGRFDEAAICCERHL-----TLARQLGD-RLSEGRALYNLGNVYHAKGKHLGQR 186
Query: 99 RFLGKATSLDKLFLPAWLMYGHSFA----VENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
+ + A Y + + + Q A NL G
Sbjct: 187 NPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRA--CG--NL-----------GN 231
Query: 155 ECGLTNNARLASKFFDLALSIAHE--DPFVI----HEMGVIAYQNHNYTVAENCFMEALS 208
L + + A + L IA E D +G + A + L+
Sbjct: 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291
Query: 209 KVKQLG---GEIIADKWEPLLNNLGH---------KAEDK-------VKQLG---GEIIA 246
+LG E + +LG+ A + ++LG GE A
Sbjct: 292 LAVELGEREVEAQS------CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345
Query: 247 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 280
+LG+ + + +E AL++ +Q L +A
Sbjct: 346 ------CWSLGNAHSAIGGHERALKYAEQHLQLA 373
Score = 36.9 bits (86), Expect = 0.007
Identities = 8/71 (11%), Positives = 14/71 (19%), Gaps = 6/71 (8%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNY 306
+ + L H G GD + V +
Sbjct: 11 ASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAF 70
Query: 307 FHKTMALKRDD 317
F + +D
Sbjct: 71 FQAAIQAGTED 81
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 64.6 bits (158), Expect = 6e-12
Identities = 46/313 (14%), Positives = 87/313 (27%), Gaps = 63/313 (20%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
+G L N A AA ++ P+ AW ++G + A
Sbjct: 27 EGLSMLKLANLAEAALAFEAV------------CQAAPEREEAWRSLGLTQAENEKDGLA 74
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL---FKGCHLPALYVGL 154
L A LD + S E+ + A+A+ ++ L +
Sbjct: 75 IIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADV 134
Query: 155 ECGLTNNARL------------ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENC 202
+ N AL + D + +GV+ ++NY A
Sbjct: 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAAN 194
Query: 203 FMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262
A+ E+ D + L N LG
Sbjct: 195 LRRAV--------ELRPDDAQ----------------------------LWNKLGATLAN 218
Query: 263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATT 322
+ +EAL+ + +AL + P + + D A + + ++ + T
Sbjct: 219 GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278
Query: 323 MLSYVIEQLIEES 335
S + + +
Sbjct: 279 EASREATRSMWDF 291
Score = 50.4 bits (121), Expect = 3e-07
Identities = 33/246 (13%), Positives = 58/246 (23%), Gaps = 55/246 (22%)
Query: 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134
G + A AW G + A + A+ A
Sbjct: 18 YMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIA 77
Query: 135 YFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH 194
+ A + +D V + V H
Sbjct: 78 L----------------------------------NHARMLDPKDIAVHAALAVSHTNEH 103
Query: 195 NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN 254
N A L ++E L + + D + +
Sbjct: 104 NANAALASLRAWLL---------SQPQYEQLGSVNL------------QADVDIDDLNVQ 142
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
+ +Y E AL + P A +G + L+ + DSA + + L+
Sbjct: 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR 202
Query: 315 RDDSFA 320
DD+
Sbjct: 203 PDDAQL 208
Score = 35.0 bits (81), Expect = 0.029
Identities = 24/137 (17%), Positives = 38/137 (27%), Gaps = 27/137 (19%)
Query: 34 LLLLKGRVYEALE--NRALA-----ADCY--KGALLADLFKLA------HELVDLYPDSA 78
L L A RA+ A + GA LA+ + + +D+ P
Sbjct: 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV 240
Query: 79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA------------WLMYGHSFAVEN 126
Y + Y + + D A + L +A + W + V N
Sbjct: 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300
Query: 127 EHDQAMAAYFNAFNLFK 143
D Y F
Sbjct: 301 RPDLVELTYAQNVEPFA 317
Score = 31.5 bits (72), Expect = 0.38
Identities = 31/240 (12%), Positives = 57/240 (23%), Gaps = 70/240 (29%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
+ + A AL ++ P+ A ++G Y L D A
Sbjct: 144 EDFFFAAPNEYRECRTLLHAAL------------EMNPNDAQLHASLGVLYNLSNNYDSA 191
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
L +A L W G + A N +A+ AY
Sbjct: 192 AANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAY---------------------- 229
Query: 158 LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI 217
+ AL I V++ M V Y +A + A+ +
Sbjct: 230 ------------NRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI--------YM 269
Query: 218 IADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 277
P + + + + + + + Q +
Sbjct: 270 QVGGTTPTGEASREATRS----------------MWDFFRMLLNVMNRPDLVELTYAQNV 313
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 61.7 bits (150), Expect = 6e-12
Identities = 20/113 (17%), Positives = 41/113 (36%)
Query: 69 ELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH 128
++ + D Y+ +Y GR + A F D + + + ++ +
Sbjct: 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86
Query: 129 DQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPF 181
QA Y AF L K + P + G A + F+L + ++++
Sbjct: 87 QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139
Score = 42.9 bits (101), Expect = 2e-05
Identities = 8/68 (11%), Positives = 22/68 (32%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
+ L + + +++++A + + A + + G Q A F +
Sbjct: 73 IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132
Query: 313 LKRDDSFA 320
D+
Sbjct: 133 HSNDEKLK 140
Score = 41.7 bits (98), Expect = 6e-05
Identities = 9/68 (13%), Positives = 21/68 (30%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
+ + + + EEA F + + + I + A + + A
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98
Query: 313 LKRDDSFA 320
L ++D
Sbjct: 99 LGKNDYTP 106
Score = 26.7 bits (59), Expect = 7.0
Identities = 6/79 (7%), Positives = 19/79 (24%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
+ ++ + + K + Y G ++ A +F
Sbjct: 5 ITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI 64
Query: 313 LKRDDSFATTMLSYVIEQL 331
+ L+ + +
Sbjct: 65 YDFYNVDYIMGLAAIYQIK 83
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 61.9 bits (150), Expect = 7e-12
Identities = 17/113 (15%), Positives = 31/113 (27%)
Query: 68 HELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE 127
L ++ D+ Y++ Y G + A LD +L G +
Sbjct: 11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ 70
Query: 128 HDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
+D A+ +Y + + A LA + P
Sbjct: 71 YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123
Score = 45.7 bits (108), Expect = 2e-06
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 2/100 (2%)
Query: 42 YEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFL 101
E L + A Y+ D + L L + + +G +G+ D A
Sbjct: 21 LEQLYSLAFNQ--YQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 78
Query: 102 GKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141
+D E +A + F A L
Sbjct: 79 SYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118
Score = 40.7 bits (95), Expect = 1e-04
Identities = 9/66 (13%), Positives = 20/66 (30%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
LG + + +Y+ A+ + V+ + G+L A +
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117
Query: 313 LKRDDS 318
L +
Sbjct: 118 LIANXP 123
Score = 36.0 bits (83), Expect = 0.005
Identities = 11/75 (14%), Positives = 25/75 (33%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
L +L + YE+A + V+ + F +G + G D A++ +
Sbjct: 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83
Query: 313 LKRDDSFATTMLSYV 327
+ + +
Sbjct: 84 MDIXEPRFPFHAAEC 98
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 64.4 bits (157), Expect = 1e-11
Identities = 46/309 (14%), Positives = 98/309 (31%), Gaps = 30/309 (9%)
Query: 37 LKGRVYEALENRALAADCYKGAL--LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
L + E+ A + + A + +E L AI+ G + +L
Sbjct: 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253
Query: 95 DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
A + KA L +++ A N+ + + A L + G
Sbjct: 254 LGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312
Query: 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214
+ N A K FD A + E+ F ++ +AY+ + + E F EA
Sbjct: 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR------ 366
Query: 215 GEIIADKWEPLLNNLGHKAEDKVKQLGGEI--------IADKWEPLLNNLGHVNRK---- 262
+ + N + + + +K + + + + K
Sbjct: 367 ---KFPEAPEVPNFFA-EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422
Query: 263 -----LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD 317
++ + EA ++A + P + ++ D+D A+ F ++ L R
Sbjct: 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482
Query: 318 SFATTMLSY 326
+++
Sbjct: 483 EEKLQAITF 491
Score = 57.1 bits (138), Expect = 3e-09
Identities = 39/314 (12%), Positives = 83/314 (26%), Gaps = 49/314 (15%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
Y ++ + + AL +L PD + +G+ A
Sbjct: 45 LSACYVSVGDLKKVVEMSTKAL------------ELKPDYSKVLLRRASANEGLGKFADA 92
Query: 98 RRFLGKATSLDKL---FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF------------ 142
L + + L + ++ + A
Sbjct: 93 MFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK 152
Query: 143 -KGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN-----Y 196
K +LP++ L +D + E + + + ++++ +
Sbjct: 153 DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESF 212
Query: 197 TVAENCFMEALSKVKQLG--GEIIADKWEPL---LNNLGHKAE-----DKVKQLGGEIIA 246
T A F E L K + E +A E K +L + +
Sbjct: 213 TKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNS 272
Query: 247 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNY 306
+ + E + +AL + +S + G + + + D A
Sbjct: 273 ------YIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKD 326
Query: 307 FHKTMALKRDDSFA 320
F K L ++ F
Sbjct: 327 FDKAKELDPENIFP 340
Score = 53.6 bits (129), Expect = 4e-08
Identities = 45/308 (14%), Positives = 92/308 (29%), Gaps = 38/308 (12%)
Query: 43 EALENRALAAD---CYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARR 99
AL+++ Y A+ + A ++L D + + + Y +G
Sbjct: 7 LALKDKGNQFFRNKKYDDAI--KYYNWA---LELKED-PVFYSNLSACYVSVGDLKKVVE 60
Query: 100 FLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT 159
KA L + L + + AM + +L + ++ LE L
Sbjct: 61 MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL-SVLSLNGDFNDASIEPMLERNLN 119
Query: 160 ----NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG 215
+ + D A + E + +N + F
Sbjct: 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179
Query: 216 EIIADKWEP----LLNNLGHKAEDKVKQLGG---EIIADKWEPL---------------- 252
+++ + L+NL ++ + + + E L
Sbjct: 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
L + G A E K+A+ + P + +++ + I A D NYF K +
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALK 298
Query: 313 LKRDDSFA 320
L ++S
Sbjct: 299 LDSNNSSV 306
Score = 52.8 bits (127), Expect = 8e-08
Identities = 39/285 (13%), Positives = 79/285 (27%), Gaps = 41/285 (14%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWY-AVGCYYYLIGRSDP 96
+ + L Y + AD +L + L +LY S ++ A + +
Sbjct: 163 SMASFFGIFKPELTFANYDESNEADK-ELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221
Query: 97 ARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY-VGLE 155
+ L + + G ++N+ A A LF + + + L
Sbjct: 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALI 279
Query: 156 CGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG 215
N++ +FD AL + + V + G + + NY A F +A
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE------- 332
Query: 216 EIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ 275
+ + L + + K+++ +
Sbjct: 333 -----------------------------LDPENIFPYIQLACLAYRENKFDDCETLFSE 363
Query: 276 ALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
A P I D D A+ + + L+
Sbjct: 364 AKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408
Score = 51.7 bits (124), Expect = 2e-07
Identities = 27/299 (9%), Positives = 74/299 (24%), Gaps = 48/299 (16%)
Query: 34 LLLLKGRVYEALENRALAADCYKGAL-LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG 92
+L + +A+ A + ++ I
Sbjct: 112 PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171
Query: 93 RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV 152
+ + ++ DK + +D+A ++ A LF+
Sbjct: 172 KPELTFANYDESNEADKELMNGLSNLYKRSP--ESYDKADESFTKAARLFEE-------- 221
Query: 153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212
+ + + + G+ + ++ A +A+
Sbjct: 222 ------------QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE---- 265
Query: 213 LGGEIIADKWEPLLN------NLGHKAE-----DKVKQLGGEIIADKWEPLLNNLGHVNR 261
+ + + + E DK +L + + + G +N
Sbjct: 266 -----LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN-SSVY----YHRGQMNF 315
Query: 262 KLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
L+ Y++A + +A + P + + + D F + +
Sbjct: 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV 374
Score = 36.3 bits (84), Expect = 0.012
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
+NL + ++ +E +AL + P + G A+ +
Sbjct: 41 FYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL-SVL 99
Query: 312 ALKRDDSFATTMLSY 326
+L D + A+
Sbjct: 100 SLNGDFNDASIEPML 114
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 61.9 bits (151), Expect = 2e-11
Identities = 36/264 (13%), Positives = 65/264 (24%), Gaps = 69/264 (26%)
Query: 72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQA 131
+ + + Y A + A D AWL+ + +D+A
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
Query: 132 MAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY 191
++ ALSI + + + G
Sbjct: 62 QESF----------------------------------RQALSIKPDSAEINNNYGWFLC 87
Query: 192 QNHN-YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWE 250
N + F +AL + A
Sbjct: 88 GRLNRPAESMAYFDKAL---------------ADPTYPTPYIA----------------- 115
Query: 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT 310
N G + K ++ A + K++L P F + + L G L A YF K
Sbjct: 116 --NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173
Query: 311 MALKRDDSFATTMLSYVIEQLIEE 334
+ +L + I + +
Sbjct: 174 QSRVEVLQADDLLLGWKIAKALGN 197
Score = 44.2 bits (105), Expect = 2e-05
Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 21/180 (11%)
Query: 39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
Y ++ A + AL +D P + +AW Y + +D A+
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSD------------PKNELAWLVRAEIYQYLKVNDKAQ 62
Query: 99 RFLGKATSLDKLFLPAWLMYGHSFAVE-NEHDQAMAAYFNAF-NLFKGCHLPALY----V 152
+A S+ YG N ++MA + A + A
Sbjct: 63 ESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122
Query: 153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212
+ G A +L+ + P E+ A+ F + S+V+
Sbjct: 123 SAKQGQFGLAEAY---LKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV 179
Score = 39.2 bits (92), Expect = 9e-04
Identities = 16/102 (15%), Positives = 33/102 (32%)
Query: 72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQA 131
YP IA G G+ A +L ++ + F PA+ + + + A
Sbjct: 107 PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166
Query: 132 MAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLAL 173
+ + + L +G + A+ ++ L
Sbjct: 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 61.1 bits (149), Expect = 2e-11
Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 29/156 (18%)
Query: 184 HEMGVIAYQNHNYTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLG---------H 231
+G + + A F + ++ G E A L+ +G
Sbjct: 30 FMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRA------LHQVGMVERMAGNWD 83
Query: 232 KAEDKVKQ---LGGEIIADKWE--PLLNNLGHVNRKLKKYEEALEFHKQALVVA------ 280
A + L + D + V A + ++++LV A
Sbjct: 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ 143
Query: 281 PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316
A F +G + +L A ++ + + +
Sbjct: 144 VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179
Score = 35.3 bits (82), Expect = 0.013
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 11/111 (9%)
Query: 39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
G V N A C+ +L L + ++ Y V G AR
Sbjct: 73 GMVERMAGNWDAARRCFLEER-----ELLASLPEDPLAASANAYEVATVALHFGDLAGAR 127
Query: 99 RFLGKATSL-----DKLFL-PAWLMYGHSFAVENEHDQAMAAYFNAFNLFK 143
+ K+ D++ + A+ G E +A + A ++F
Sbjct: 128 QEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178
Score = 30.3 bits (69), Expect = 0.56
Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 42/198 (21%)
Query: 39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
G VY ++ A ++ + A + D A + VG + G D AR
Sbjct: 33 GYVYAFMDRFDEARASFQALQ-----QQAQKSGDH-TAEHRALHQVGMVERMAGNWDAAR 86
Query: 99 RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL 158
R + L ++ + A A + V
Sbjct: 87 RCFLEERELLA-------------SLPEDPLAASANAYE--------------VATVALH 119
Query: 159 TNNARLASKFFDLALSIAHE--DPFVI----HEMGVIAYQNHNYTVAENCFMEALSKVKQ 212
+ A + ++ +L A + D I +G +A Q N A+ ++ A +
Sbjct: 120 FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179
Query: 213 LGGEIIADKWEPLLNNLG 230
L ++ L+ L
Sbjct: 180 LEDSEAVNE---LMTRLN 194
Score = 28.8 bits (65), Expect = 1.8
Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 35/128 (27%)
Query: 165 ASKFFDLALSIA---HEDPFVI----HEMGVIAYQNHNYTVAENCFMEALSKVKQLG--- 214
A + F + EDP +E+ +A + A + ++L +Q
Sbjct: 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV 144
Query: 215 GEIIADKWEPLLNNLGH----------------KAEDKVKQLGGEIIADKWEPLLNNLGH 258
A LG +A D +L ++ L+ L
Sbjct: 145 AIACA------FRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNE---LMTRLNG 195
Query: 259 VNRKLKKY 266
+ +
Sbjct: 196 LEHHHHHH 203
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 63.0 bits (154), Expect = 2e-11
Identities = 55/314 (17%), Positives = 103/314 (32%), Gaps = 64/314 (20%)
Query: 39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
G Y L + A A + + L LA + D A A +G ++G D A
Sbjct: 50 GNAYFYLHDYAKALEYHHHDL-----TLARTIGD-QLGEAKASGNLGNTLKVLGNFDEAI 103
Query: 99 RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--KGCHLPALYVGLEC 156
+ + + + ++ +A A +N N++ KG
Sbjct: 104 VCCQRHLDISR-------------ELNDKVGEA-RALYNLGNVYHAKGKSFGCPGPQDTG 149
Query: 157 GLTNNARL----ASKFFDLALSIAHE--DPFVI----HEMGVIAYQNHNYTVAENCFMEA 206
+ R A ++ LS+ D +G Y N+ A +
Sbjct: 150 EFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209
Query: 207 LSKVKQLGGEI-IADKWEPLLNNLG---------HKAEDKVKQ-------LGGE-IIADK 248
L K+ G + +NLG A + K+ L + A
Sbjct: 210 LLIAKEFGDKAAERR----AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ- 264
Query: 249 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDS 302
+LG+ L+ YE+A+++H + L +A + +G G+ D
Sbjct: 265 ---SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321
Query: 303 AVNYFHKTMALKRD 316
A+++ K + + R+
Sbjct: 322 AMHFAEKHLEISRE 335
Score = 50.3 bits (121), Expect = 3e-07
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA----PMKASTFCCIGYIQALTGDLDSAVNYFH 308
L G K + F + A+ V ++ + +G D A+ Y H
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67
Query: 309 KTMALKR 315
+ L R
Sbjct: 68 HDLTLAR 74
Score = 45.7 bits (109), Expect = 9e-06
Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 40/161 (24%)
Query: 165 ASKFFDLALSIAHEDPFVI----HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD 220
FF+ A+ + ED + ++G + H+Y A L+ + +G +
Sbjct: 24 GVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ---- 79
Query: 221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 280
A NLG+ + L ++EA+ ++ L ++
Sbjct: 80 ----------------------LGEAK----ASGNLGNTLKVLGNFDEAIVCCQRHLDIS 113
Query: 281 ------PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR 315
+A +G + G +
Sbjct: 114 RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPED 154
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 61.9 bits (151), Expect = 3e-11
Identities = 37/257 (14%), Positives = 75/257 (29%), Gaps = 60/257 (23%)
Query: 73 LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAM 132
++ A+ +G Y G ++ A+ L KA +D A F E E A
Sbjct: 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLAD 91
Query: 133 AAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ 192
Y AL+ + V++ G Y+
Sbjct: 92 EEY----------------------------------RKALASDSRNARVLNNYGGFLYE 117
Query: 193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG---------HKAEDKVKQLGGE 243
Y A +EA + ++ NLG +A++ ++
Sbjct: 118 QKRYEEAYQRLLEASQDT------LYPERSRVF-ENLGLVSLQMKKPAQAKEYFEK---- 166
Query: 244 IIADKWEP----LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGD 299
+ + + + + K ++Y A +++ A + + + D
Sbjct: 167 --SLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED 224
Query: 300 LDSAVNYFHKTMALKRD 316
D+A +Y + L
Sbjct: 225 RDTAASYGLQLKRLYPG 241
Score = 44.2 bits (105), Expect = 2e-05
Identities = 11/67 (16%), Positives = 23/67 (34%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
LG + E+A ++AL + P A + + + A + K +A
Sbjct: 41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100
Query: 314 KRDDSFA 320
++
Sbjct: 101 DSRNARV 107
Score = 40.7 bits (96), Expect = 3e-04
Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 20/159 (12%)
Query: 172 ALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH 231
E ++G+ Q N A+ +AL I L
Sbjct: 29 TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE---------IDPSSADAHAALAV 79
Query: 232 KAEDKVKQLGGEI--------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA--P 281
+ + +LNN G + K+YEEA + +A P
Sbjct: 80 -VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP 138
Query: 282 MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
++ F +G + A YF K++ L R+
Sbjct: 139 ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV 177
Score = 37.6 bits (88), Expect = 0.003
Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 26/128 (20%)
Query: 39 GRVYEALENRALAADCYK----------------GALLADL---------FKLAHELVDL 73
V++ LA + Y+ G L + A + L
Sbjct: 78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT-L 136
Query: 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMA 133
YP+ + + +G + + A+ + K+ L++ L E E+ A
Sbjct: 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196
Query: 134 AYFNAFNL 141
Y
Sbjct: 197 YYDLFAQG 204
Score = 36.9 bits (86), Expect = 0.006
Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 12/104 (11%)
Query: 39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
G V ++ A A + ++ +L + + + Y PAR
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLN------------RNQPSVALEMADLLYKEREYVPAR 195
Query: 99 RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF 142
++ + L+ V + D A + L+
Sbjct: 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 62.7 bits (153), Expect = 3e-11
Identities = 56/314 (17%), Positives = 104/314 (33%), Gaps = 64/314 (20%)
Query: 39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
G Y L + A A + + L LA + D A A +G ++G D A
Sbjct: 54 GNAYFYLHDYAKALEYHHHDL-----TLARTIGDQ-LGEAKASGNLGNTLKVLGNFDEAI 107
Query: 99 RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--KGCHLPALYVGLEC 156
+ + + + ++ +A A +N N++ KG
Sbjct: 108 VCCQRHLDISR-------------ELNDKVGEA-RALYNLGNVYHAKGKSFGCPGPQDVG 153
Query: 157 GLTNNARL----ASKFFDLALSIAHE--DPFVI----HEMGVIAYQNHNYTVAENCFMEA 206
R A F++ LS+ D +G Y N+ A +
Sbjct: 154 EFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213
Query: 207 LSKVKQLGGEI-IADKWEPLLNNLGH---------KAEDKVKQ-------LGGE-IIADK 248
L K+ G + +NLG+ A + K+ L + A
Sbjct: 214 LLIAKEFGDKAAERR----AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ- 268
Query: 249 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDS 302
+LG+ L+ YE+A+++H + L +A + +G G+ D
Sbjct: 269 ---SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325
Query: 303 AVNYFHKTMALKRD 316
A+++ K + + R+
Sbjct: 326 AMHFAEKHLEISRE 339
Score = 50.0 bits (120), Expect = 5e-07
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNY 306
+ LG+ L Y +ALE+H L +A +A +G + G+ D A+
Sbjct: 50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC 109
Query: 307 FHKTMALKR 315
+ + + R
Sbjct: 110 CQRHLDISR 118
Score = 49.2 bits (118), Expect = 8e-07
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA----PMKASTFCCIGYIQALTGDLDSAVNYFH 308
L G K + F + A+ V ++ + +G D A+ Y H
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 309 KTMALKR 315
+ L R
Sbjct: 72 HDLTLAR 78
Score = 45.8 bits (109), Expect = 1e-05
Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 40/172 (23%)
Query: 165 ASKFFDLALSIAHEDPFVI----HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD 220
FF+ A+ + ED + ++G + H+Y A L+ + +G +
Sbjct: 28 GVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ---- 83
Query: 221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 280
A NLG+ + L ++EA+ ++ L ++
Sbjct: 84 ----------------------LGEAK----ASGNLGNTLKVLGNFDEAIVCCQRHLDIS 117
Query: 281 ------PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326
+A +G + G + + +
Sbjct: 118 RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169
Score = 31.5 bits (72), Expect = 0.37
Identities = 39/248 (15%), Positives = 69/248 (27%), Gaps = 69/248 (27%)
Query: 39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
G + L N A ++ L +A E D A+ +G Y +G + A
Sbjct: 194 GNTHYLLGNFRDAVIAHEQRL-----LIAKEFGD-KAAERRAYSNLGNAYIFLGEFETAS 247
Query: 99 RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL 158
+ K L + +++ +A + ++ +G L
Sbjct: 248 EYYKKTLLLAR-------------QLKDRAVEA-QSCYS--------------LGNTYTL 279
Query: 159 TNNARLASKFFDLALSIAHEDPFVIHE------MGVIAYQNHNYTVAENCFMEALSKVKQ 212
+ A + L+IA E I E +G N+ A + + L ++
Sbjct: 280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339
Query: 213 LG---GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEA 269
+G GE+ A NL L LG
Sbjct: 340 VGDKSGELTA------RLNLSD--------------------LQMVLGLSYSTNNSIMSE 373
Query: 270 LEFHKQAL 277
+L
Sbjct: 374 NTEIDSSL 381
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 62.5 bits (152), Expect = 5e-11
Identities = 32/296 (10%), Positives = 67/296 (22%), Gaps = 40/296 (13%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
+ALE A L P+ +A + G +
Sbjct: 146 HDGGKQALETVQALLPVLCQAH------------GLTPEQVVAIASNGGGKQALETVQRL 193
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
L +A L + A G + + A L + A+ G
Sbjct: 194 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL-TPQQVVAIA---SNG 249
Query: 158 LTNNA----RLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213
A + A + + I +A
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAH------ 303
Query: 214 GGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPL---------LNNLGHVNRKLK 264
+ + + +N G K + ++ + + + + L+
Sbjct: 304 --GLTPQQVVAIASNGGGKQA---LETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 358
Query: 265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
+ L QA + P + G + + + + L + A
Sbjct: 359 TVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA 414
Score = 62.5 bits (152), Expect = 5e-11
Identities = 27/296 (9%), Positives = 62/296 (20%), Gaps = 34/296 (11%)
Query: 35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
+ +ALE A L P +A + +
Sbjct: 75 IASHDGGKQALETVQRLLPVLCQAH------------GLTPQQVVAIASHDGGKQALETV 122
Query: 95 DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
L +A L + A + + A L
Sbjct: 123 QRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT--PEQVVAIASN 180
Query: 155 ECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212
G + A + + I G +A
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG---- 236
Query: 213 LGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI--------IADKWEPLLNNLGHVNRKLK 264
+ + + + G + ++ + + + + + + + L+
Sbjct: 237 -----LTPQQVVAIASNG-GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE 290
Query: 265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
+ L QA + P + G + + + + L A
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346
Score = 60.1 bits (146), Expect = 3e-10
Identities = 27/272 (9%), Positives = 66/272 (24%), Gaps = 20/272 (7%)
Query: 58 ALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLM 117
A+ A L ++L P+ +A + + L +A L + A
Sbjct: 52 AVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 111
Query: 118 YGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV-GLECGLTNNARLASKFFDLALSIA 176
+ + + A L + A+ + A +
Sbjct: 112 HDGGKQALETVQRLLPVLCQAHGL-TPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT 170
Query: 177 HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK 236
E I G +A + + + + G +
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLLPVLCQAHG---------LTPQQVVAIASNGG-GKQA 220
Query: 237 VKQLGGEI--------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 288
++ + + + + + + G + L+ + L QA + P +
Sbjct: 221 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA 280
Query: 289 CIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
+ + + + L A
Sbjct: 281 SNSGGKQALETVQRLLPVLCQAHGLTPQQVVA 312
Score = 59.8 bits (145), Expect = 4e-10
Identities = 29/296 (9%), Positives = 64/296 (21%), Gaps = 34/296 (11%)
Query: 35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
+ +ALE A L P+ +A + +
Sbjct: 109 IASHDGGKQALETVQRLLPVLCQAH------------GLTPEQVVAIASHDGGKQALETV 156
Query: 95 DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
L +A L + A G + + A L
Sbjct: 157 QALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP--QQVVAIASN 214
Query: 155 ECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212
G + A + + I G +A
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH----- 269
Query: 213 LGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII----ADKWEP----LLNNLGHVNRKLK 264
+ + + + + ++ + + A P + + G + L+
Sbjct: 270 ---GLTPQQVV-AIASNS-GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 324
Query: 265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
+ L QA + P + + + + + L + A
Sbjct: 325 TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 380
Score = 57.1 bits (138), Expect = 3e-09
Identities = 31/289 (10%), Positives = 55/289 (19%), Gaps = 66/289 (22%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
G +ALE A L P +A + +
Sbjct: 248 NGGGKQALETVQRLLPVLCQAH------------GLTPQQVVAIASNSGGKQALETVQRL 295
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL---------FKGCHLP 148
L +A L + A G + + A L
Sbjct: 296 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 355
Query: 149 ALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208
AL + A + E I G +A
Sbjct: 356 AL---------ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG 406
Query: 209 KVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEE 268
E + + L+ +
Sbjct: 407 ----------------------LTPEQ----------VVAI----ASHDGGKQALETVQR 430
Query: 269 ALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD 317
L QA + P + G + + + ++ +A +D
Sbjct: 431 LLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTND 479
Score = 55.1 bits (133), Expect = 1e-08
Identities = 30/294 (10%), Positives = 66/294 (22%), Gaps = 36/294 (12%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
G +ALE A L P +A + G +
Sbjct: 180 NGGGKQALETVQRLLPVLCQAH------------GLTPQQVVAIASNGGGKQALETVQRL 227
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
L +A L + A G + + A L + A+ G
Sbjct: 228 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL-TPQQVVAIA-SNSGG 285
Query: 158 LTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG 215
+ A + + I G +A
Sbjct: 286 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG------- 338
Query: 216 EIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPL---------LNNLGHVNRKLKKY 266
+ + + + + ++ + ++ + + + G + L+
Sbjct: 339 --LTPQQVVAIASHD-GGKQALETVQ-RLLPVLCQAHGLTPEQVVAIASNGGGKQALETV 394
Query: 267 EEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
+ L QA + P + + + + + L A
Sbjct: 395 QRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 448
Score = 44.0 bits (104), Expect = 4e-05
Identities = 30/213 (14%), Positives = 46/213 (21%), Gaps = 39/213 (18%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
G +ALE A L P +A + +
Sbjct: 316 NGGGKQALETVQRLLPVLCQAH------------GLTPQQVVAIASHDGGKQALETVQRL 363
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF---------KGCHLP 148
L +A L + A G + + A L
Sbjct: 364 LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQ 423
Query: 149 ALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208
AL + A + + I G + + AL
Sbjct: 424 AL---------ETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPAL- 473
Query: 209 KVKQLGGEIIADKWEPLLNNLG-HKAEDKVKQL 240
+ + L LG A D VK+L
Sbjct: 474 -------AALTNDHLVALACLGGRPALDAVKKL 499
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 62.0 bits (151), Expect = 8e-11
Identities = 46/312 (14%), Positives = 93/312 (29%), Gaps = 37/312 (11%)
Query: 27 QSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGC 86
Q + + L +G + +N A Y+ A+ +L P+ + + +
Sbjct: 20 QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAI------------ELDPNEPVFYSNISA 67
Query: 87 YYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH 146
Y G + F KA + A L + AM + +L
Sbjct: 68 CYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVLSLNGDFD 126
Query: 147 LPALYVGLECGLTNNAR-----LASKFFDLALSIAHEDPFVIHEMGVIA--------YQN 193
++ LE L A SK + + + G+ +
Sbjct: 127 GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186
Query: 194 HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQ-LGGEIIADKWEP- 251
NY A +AL ++ D+ + N+L K+ D L + D
Sbjct: 187 SNYDTAYALLSDALQRLYSA-----TDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241
Query: 252 ---LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFH 308
L G + +A ++++ + P +++ + A + +F
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEFFKFFQ 300
Query: 309 KTMALKRDDSFA 320
K + L +
Sbjct: 301 KAVDLNPEYPPT 312
Score = 60.1 bits (146), Expect = 3e-10
Identities = 40/294 (13%), Positives = 88/294 (29%), Gaps = 37/294 (12%)
Query: 35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
L G + N A + ++ +L+P ++ + S
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESI------------NLHPT-PNSYIFLALTLADKENS 292
Query: 95 DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
+F KA L+ + P + G + + ++ A + A +L Y+ L
Sbjct: 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP--ENVYPYIQL 350
Query: 155 ECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212
C L + + FF+ P V I ++ A + A
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR---- 406
Query: 213 LGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEF 272
+ + E + +G +G I + ++ +K+ A++
Sbjct: 407 -----LEEVQEKIHVGIGP-------LIGKATILARQ----SSQDPTQLDEEKFNAAIKL 450
Query: 273 HKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326
+A + P + ++ +D A+ F + L R ++
Sbjct: 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504
Score = 57.8 bits (140), Expect = 2e-09
Identities = 37/301 (12%), Positives = 76/301 (25%), Gaps = 37/301 (12%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAH-----ELVDLYPDSAIAWYAVGCYYYLIG 92
+ E+L N A L F A E + +
Sbjct: 99 RASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158
Query: 93 RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV 152
+ P+ L + L S + +D A A +A V
Sbjct: 159 QVLPSNTSLASFFGIFDSHL-----EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213
Query: 153 GLECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKV 210
+ + + + + G+ + +N A+ E+++
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273
Query: 211 KQ------LGGEIIADKWEPLLNNLGHKAE-----DKVKQLGGEIIADKWEPLLNNLGHV 259
L L + + E K L E + + G +
Sbjct: 274 PTPNSYIFLAL---------TLADKENSQEFFKFFQKAVDLNPEY-PPTY----YHRGQM 319
Query: 260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF 319
L+ Y+ A E ++A + P + + + G + +F++T
Sbjct: 320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE 379
Query: 320 A 320
Sbjct: 380 V 380
Score = 36.2 bits (84), Expect = 0.012
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
+N+ E+ +EF +AL + P + G+ A+ +
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVL 119
Query: 312 ALKRDDSFATTMLSY 326
+L D A+
Sbjct: 120 SLNGDFDGASIEPML 134
Score = 27.4 bits (61), Expect = 7.4
Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 4/60 (6%)
Query: 265 KYEEALEFHKQALVVAP----MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
+ Q ++P A G + + A+ Y+ + L ++
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 61.1 bits (149), Expect = 9e-11
Identities = 38/333 (11%), Positives = 83/333 (24%), Gaps = 50/333 (15%)
Query: 35 LLLKGRVYEALE--NRALAAD-------CYKGALLADLFKLAHELVD------LYPDSAI 79
LL G++ +AL + A+ D + + + K L D L D
Sbjct: 13 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTA 72
Query: 80 AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE-------------- 125
A G G+ D A K + +
Sbjct: 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132
Query: 126 -NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARL--ASKFFDLALSIAHEDPFV 182
++ A+ + L A A + ++
Sbjct: 133 GADYTAAITFLDKILEVCVWD--AELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190
Query: 183 IHEMGVIAYQNHNYTVAENCFMEAL------SKVKQLGGEIIADKWEPLLNNLGHKAE-- 234
+++ + YQ ++ ++ + E L + ++ +
Sbjct: 191 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 250
Query: 235 -------DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF 287
+ V + + A+ + H K +K EA+ + L + P +
Sbjct: 251 TDATSKYESVMKTEPSV-AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL 309
Query: 288 CCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
+ D A+ + +D
Sbjct: 310 KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342
Score = 59.6 bits (145), Expect = 3e-10
Identities = 43/293 (14%), Positives = 79/293 (26%), Gaps = 67/293 (22%)
Query: 35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
L G+ A A A + A+ D PD+ IA+Y + +G+S
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAV------------DGDPDNYIAYYRRATVFLAMGKS 53
Query: 95 DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
A L K +L F A L GH + + D+A +
Sbjct: 54 KAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS------------- 100
Query: 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214
N + + + ++ + + A+ +YT A + L
Sbjct: 101 ------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE------ 148
Query: 215 GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK 274
+ L K + +A+ K
Sbjct: 149 ------------------------------VCVWDAELRELRAECFIKEGEPRKAISDLK 178
Query: 275 QALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327
A + F I + GD + +++ + + L +D V
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Score = 39.2 bits (92), Expect = 0.001
Identities = 27/247 (10%), Positives = 58/247 (23%), Gaps = 56/247 (22%)
Query: 34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR 93
L L+ + A K A L D+ A+Y + YY +G
Sbjct: 156 LRELRAECFIKEGEPRKAISDLKAAS------------KLKSDNTEAFYKISTLYYQLGD 203
Query: 94 SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG 153
+ + + + LD+ + Y + + A
Sbjct: 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE-LIRD--------------- 247
Query: 154 LECGLTNNARLASKFFDLALSIAHEDPFVIHE----MGVIAYQNHNYTVAENCFMEALSK 209
A+ ++ + + ++ A E L
Sbjct: 248 ------GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ- 300
Query: 210 VKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI--------IADKWEPLLNNLGHVNR 261
+ L + +A + I + + + L R
Sbjct: 301 --------MEPDNVNALKDRA-EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351
Query: 262 KLKKYEE 268
LK+ ++
Sbjct: 352 LLKQSQK 358
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 60.8 bits (148), Expect = 1e-10
Identities = 46/309 (14%), Positives = 84/309 (27%), Gaps = 60/309 (19%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
+G + + + A + P A AW +G A
Sbjct: 71 EGLKRLKEGDLPVTILFMEAA------------ILQDPGDAEAWQFLGITQAENENEQAA 118
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL---FKGCHLPALYVGL 154
L + L L A + S+ + A A N +K
Sbjct: 119 IVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG 178
Query: 155 ECGLTNNARLASKFFD---------LALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFME 205
+ + + S + + DP + +GV+ + + + A + F
Sbjct: 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNA 238
Query: 206 ALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK 265
AL + + + L N LG +
Sbjct: 239 AL--------TVRPEDYS----------------------------LWNRLGATLANGDR 262
Query: 266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS 325
EEA+E + +AL + P + +G G AV+ F ++L+R +
Sbjct: 263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322
Query: 326 YVIEQLIEE 334
I I
Sbjct: 323 PAISGNIWA 331
Score = 57.0 bits (138), Expect = 3e-09
Identities = 36/245 (14%), Positives = 66/245 (26%), Gaps = 28/245 (11%)
Query: 72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQA 131
+ + G G F+ A D AW G + A A
Sbjct: 59 ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAA 118
Query: 132 MAAYFNAFNLFKGCHLPALYVGLECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVI 189
+ A L + +L AL L TN + A + + + +++
Sbjct: 119 IVALQRCLEL-QPNNLKALM-ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS 176
Query: 190 AYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKW 249
+ + + E N G I D
Sbjct: 177 PGLTRRMSKSPVDSSVLE--------GVKELYLEAAHQN------------GDMIDPDLQ 216
Query: 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHK 309
LG + ++ A++ AL V P S + +G A + AV + +
Sbjct: 217 ----TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTR 272
Query: 310 TMALK 314
+ ++
Sbjct: 273 ALEIQ 277
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 60.0 bits (146), Expect = 2e-10
Identities = 43/263 (16%), Positives = 74/263 (28%), Gaps = 38/263 (14%)
Query: 60 LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYG 119
LA + ++ + A Y G Y +G AR +A ++ + G
Sbjct: 25 LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLG 84
Query: 120 HSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARL--ASKFFDLALSIAH 177
D A A+ + L + A ++ L R A
Sbjct: 85 IYLTQAGNFDAAYEAFDSVLEL-DPTYNYA-HLNRGIALYYGGRDKLAQDDLLAFYQDDP 142
Query: 178 EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKV 237
DPF + +A Q + A+ + K +DK + N +
Sbjct: 143 NDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEK---------SDKEQWGWNIVE------- 185
Query: 238 KQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALT 297
LG+++ + E +A + T +G
Sbjct: 186 ----------------FYLGNISEQ-TLMERLKADATDNTSLAEHLSETNFYLGKYYLSL 228
Query: 298 GDLDSAVNYFHKTMALKRDDSFA 320
GDLDSA F +A +
Sbjct: 229 GDLDSATALFKLAVANNVHNFVE 251
Score = 31.5 bits (72), Expect = 0.33
Identities = 12/94 (12%), Positives = 23/94 (24%), Gaps = 2/94 (2%)
Query: 43 EALENRALA-ADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFL 101
LA + L + + I + +G + +
Sbjct: 146 FRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ-TLMERLKADA 204
Query: 102 GKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
TSL + G + + D A A +
Sbjct: 205 TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 57.5 bits (140), Expect = 2e-10
Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 36/157 (22%)
Query: 186 MGVIAYQNHNYTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLG---------HKA 233
+G Y N+ A + L K+ G E IA +NLG A
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIA------YSNLGNAYIFLGEFETA 68
Query: 234 EDKVKQ-------LGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA----- 280
+ K+ L A +LG+ L+ YE+A+++H + L +A
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQ----SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124
Query: 281 -PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316
+ +G G+ D A+++ K + + R+
Sbjct: 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161
Score = 52.2 bits (126), Expect = 2e-08
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNY 306
NLG+ + L + +A+ H+Q L++A + + +G G+ ++A Y
Sbjct: 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEY 71
Query: 307 FHKTMALKR 315
+ KT+ L R
Sbjct: 72 YKKTLLLAR 80
Score = 27.1 bits (61), Expect = 6.1
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
G Y L++ A D + L +A EL D A +++G Y +G D A
Sbjct: 96 GNTYTLLQDYEKAIDYHLKHL-----AIAQELKD-RIGEGRACWSLGNAYTALGNHDQAM 149
Query: 99 RFLGKA 104
F K
Sbjct: 150 HFAEKH 155
Score = 26.7 bits (60), Expect = 7.1
Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 28/119 (23%)
Query: 39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
G Y L A++ YK L LA +L D A + Y++G Y L+ + A
Sbjct: 56 GNAYIFLGEFETASEYYKKTL-----LLARQLKDR-AVEAQSCYSLGNTYTLLQDYEKAI 109
Query: 99 RFL--------------GKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK 143
+ G+ + L G+++ HDQAM + +
Sbjct: 110 DYHLKHLAIAQELKDRIGEGRACWSL--------GNAYTALGNHDQAMHFAEKHLEISR 160
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 59.4 bits (144), Expect = 4e-10
Identities = 33/267 (12%), Positives = 81/267 (30%), Gaps = 31/267 (11%)
Query: 35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
L +G + A Y+ A K + D + A + V YY + ++
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAE-----KELPFVSD-DIEKAEFHFKVAEAYYHMKQT 157
Query: 95 DPARRFLGKATSLDKLFLP-------AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL 147
+ + +A + + + + ++ +D+A+ A L
Sbjct: 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217
Query: 148 PALY------VGLECGLTNNARLASKFFDLALSIAHED-----PFVIHEMGVIAYQNHNY 196
+ + + ++A + F A ++ E P V+ + +
Sbjct: 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT 277
Query: 197 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK------VKQLGGEIIADKWE 250
A E L + + + + L + + D+ + + + E
Sbjct: 278 QKAFQFIEEGLDHITARSHKFYKELFL-FLQAVYKETVDERKIHDLLSYFEKKNLHAYIE 336
Query: 251 PLLNNLGHVNRKLKKYEEALEFHKQAL 277
+ V +E+A F+++ L
Sbjct: 337 ACARSAAAVFESSCHFEQAAAFYRKVL 363
Score = 57.5 bits (139), Expect = 2e-09
Identities = 32/227 (14%), Positives = 64/227 (28%), Gaps = 31/227 (13%)
Query: 125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV-- 182
+ E DQ + Y++ + L Y+ N + + +
Sbjct: 44 QMEEDQDLLIYYS--LMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKY 101
Query: 183 --IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLG--------- 230
+ G+ + Y A + EA ++ + +I A+ +
Sbjct: 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAE----FHFKVAEAYYHMKQT 157
Query: 231 HKAED---KVKQLGGEIIADKWE--PLLNNLGHVNRKLKKYEEALEFHKQALVVA----- 280
H + + + L + K Y++AL + AL +A
Sbjct: 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217
Query: 281 -PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326
A + I +GD AV +F K + R+
Sbjct: 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264
Score = 50.2 bits (120), Expect = 4e-07
Identities = 37/304 (12%), Positives = 75/304 (24%), Gaps = 62/304 (20%)
Query: 36 LLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD--SAIAWYAVGCYYYLIGR 93
L+ R L+ + +L + + + G Y +
Sbjct: 57 LMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKE 116
Query: 94 SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG 153
A + +A V ++ ++A +F V
Sbjct: 117 YVEAIGYYREAEKELP-------------FVSDDIEKA-EFHFK--------------VA 148
Query: 154 LECGLTNNARLASKFFDLALSIAHEDPFVIHE-------MGVIAYQNHNYTVAENCFMEA 206
++ AL I P + +Y A A
Sbjct: 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAA 208
Query: 207 LSKVKQLGGE-IIADKWEPLLNNLGH---------KAED---KVKQLGGEIIADKWEPLL 253
L + + IA L N+ + A + K ++ E + D +L
Sbjct: 209 LELAMDIQNDRFIAI----SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVA--------PMKASTFCCIGYIQALTGDLDSAVN 305
L K + ++A +F ++ L + + ++
Sbjct: 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324
Query: 306 YFHK 309
YF K
Sbjct: 325 YFEK 328
Score = 30.6 bits (69), Expect = 0.86
Identities = 20/191 (10%), Positives = 51/191 (26%), Gaps = 18/191 (9%)
Query: 35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
L + Y+ ++ A + AL +LA ++ + AI+ + Y G
Sbjct: 185 LFVIAGNYDDFKHYDKALPHLEAAL-----ELAMDIQN-DRFIAISLLNIANSYDRSGDD 238
Query: 95 DPARRFLGKATSLDKLFLP-----AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPA 149
A KA + + +P + + +A +
Sbjct: 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298
Query: 150 LYVGLEC-GLTNNARLASKFFDLALSIAHE---DPFVI---HEMGVIAYQNHNYTVAENC 202
+ + LS + ++ + + ++ A
Sbjct: 299 YKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAF 358
Query: 203 FMEALSKVKQL 213
+ + L + +
Sbjct: 359 YRKVLKAQEDI 369
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 59.8 bits (144), Expect = 5e-10
Identities = 31/251 (12%), Positives = 62/251 (24%), Gaps = 70/251 (27%)
Query: 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134
P A + + G + A R KA + F A + + +A+
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 135 YFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH 194
Y A+ I+ MG +
Sbjct: 66 Y----------------------------------KEAIRISPTFADAYSNMGNTLKEMQ 91
Query: 195 NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN 254
+ A C+ A+ I + +
Sbjct: 92 DVQGALQCYTRAIQ------------------------------------INPAFADAHS 115
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
NL +++ EA+ ++ AL + P +C + + + D K +++
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175
Query: 315 RDDSFATTMLS 325
D + S
Sbjct: 176 ADQLEKNRLPS 186
Score = 48.7 bits (115), Expect = 2e-06
Identities = 17/80 (21%), Positives = 40/80 (50%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
LNNL ++ R+ EEA+ +++AL V P A+ + + G L A+ ++ + +
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 312 ALKRDDSFATTMLSYVIEQL 331
+ + A + + ++++
Sbjct: 71 RISPTFADAYSNMGNTLKEM 90
Score = 47.5 bits (112), Expect = 4e-06
Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 36/163 (22%)
Query: 165 ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEP 224
A + + AL + E + + Q A + EA+
Sbjct: 28 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---------------- 71
Query: 225 LLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 284
I+ + +N+G+ ++++ + AL+ + +A+ + P A
Sbjct: 72 --------------------ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA 111
Query: 285 STFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327
+ I +G++ A+ + + LK D A L++
Sbjct: 112 DAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154
Score = 47.1 bits (111), Expect = 5e-06
Identities = 16/78 (20%), Positives = 38/78 (48%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
+NL V ++ K +EAL +K+A+ ++P A + +G D+ A+ + + + +
Sbjct: 47 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106
Query: 314 KRDDSFATTMLSYVIEQL 331
+ A + L+ + +
Sbjct: 107 NPAFADAHSNLASIHKDS 124
Score = 44.4 bits (104), Expect = 3e-05
Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 15/123 (12%)
Query: 34 LLLLKGRVYEALE--NRALA-------ADCYKGALLADLFKLA------HELVDLYPDSA 78
+ +G + EA+ +AL A ++L KL E + + P A
Sbjct: 18 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 77
Query: 79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNA 138
A+ +G + A + +A ++ F A +A+A+Y A
Sbjct: 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA 137
Query: 139 FNL 141
L
Sbjct: 138 LKL 140
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 59.3 bits (144), Expect = 5e-10
Identities = 39/300 (13%), Positives = 78/300 (26%), Gaps = 23/300 (7%)
Query: 35 LLLKGRVYEALENRALAADCYKGAL-LADLFKLAHELVDLY--PDSAIAWYAVGCYYYLI 91
L +G + A D +K L E D + +
Sbjct: 97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156
Query: 92 GRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY 151
G A FL K + + F E E +A++ A L
Sbjct: 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK 216
Query: 152 VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVK 211
+ + L+ L + + + ++ N +E+ ++
Sbjct: 217 ISTLYYQLGDHELSLSEVRECLKLDQDHK--------RCFAHYKQVKKLNKLIESAEELI 268
Query: 212 QLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE 271
+ G ++ + + V + I A+ + H K +K EA+
Sbjct: 269 RDG------RYTDATSKY-----ESVMKTEPSI-AEYTVRSKERICHCFSKDEKPVEAIR 316
Query: 272 FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331
+ L + P + + D A+ + +D L L
Sbjct: 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376
Score = 54.3 bits (131), Expect = 2e-08
Identities = 46/289 (15%), Positives = 78/289 (26%), Gaps = 63/289 (21%)
Query: 42 YEALENRA---LAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
E LAA AL H VD PD+ IA+Y + +G+S A
Sbjct: 26 VEKHLELGKKLLAAGQLADAL-----SQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAAL 80
Query: 99 RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL 158
L K L F A L GH + + D+A +
Sbjct: 81 PDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS----------------- 123
Query: 159 TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEII 218
N + + I ++ + + A+ + +YT A + L
Sbjct: 124 --NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE---------- 171
Query: 219 ADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 278
+ L K + +A+ K A
Sbjct: 172 --------------------------VCVWDAELRELRAECFIKEGEPRKAISDLKAASK 205
Query: 279 VAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327
+ F I + GD + +++ + + L +D V
Sbjct: 206 LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254
Score = 47.4 bits (113), Expect = 3e-06
Identities = 38/279 (13%), Positives = 72/279 (25%), Gaps = 62/279 (22%)
Query: 34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR 93
L L+ + A K A L D+ A+Y + YY +G
Sbjct: 179 LRELRAECFIKEGEPRKAISDLKAAS------------KLKNDNTEAFYKISTLYYQLGD 226
Query: 94 SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA-----YFNAFNLFKGC--- 145
+ + + + LD+ + Y + + A Y +A + ++
Sbjct: 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286
Query: 146 --HLPALYVGLECGL------TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT 197
+ V + + A + L + ++ + + Y
Sbjct: 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD 346
Query: 198 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH--------KAEDKVKQLG-------G 242
A + A + + + L + D K LG
Sbjct: 347 EAIQDYETAQE---------HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397
Query: 243 EII------ADKWEP----LLNNLGHVNRKLKKYEEALE 271
EII A +W P +K A E
Sbjct: 398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKE 436
Score = 37.0 bits (86), Expect = 0.007
Identities = 13/77 (16%), Positives = 27/77 (35%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
V + K + AL + + + + G++ G LD A + F K +
Sbjct: 63 YYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122
Query: 313 LKRDDSFATTMLSYVIE 329
++ S +I+
Sbjct: 123 SNPSENEEKEAQSQLIK 139
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 59.1 bits (143), Expect = 5e-10
Identities = 35/268 (13%), Positives = 90/268 (33%), Gaps = 32/268 (11%)
Query: 35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
+G A +K A + D + A ++ + YY + ++
Sbjct: 106 NFFRGMYELDQREYLSAIKFFKKAE-----SKLIFVKD-RIEKAEFFFKMSESYYYMKQT 159
Query: 95 DPARRFLGKATSLDKLFL-------PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL 147
+ + +A + K ++ +F +++ A++ + A+++ +
Sbjct: 160 YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219
Query: 148 PALY------VGLECGLTNNARLASKFFDLALSIAHED------PFVIHEMGVIAYQNHN 195
P L +GL + A +F A+++ E P + I Y+
Sbjct: 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK 279
Query: 196 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK------VKQLGGEIIADKW 249
A + ++ ++ G I ++E L +L D+ L +++
Sbjct: 280 IDKAHEYHSKGMAYSQKAGDVIYLSEFE-FLKSLYLSGPDEEAIQGFFDFLESKMLYADL 338
Query: 250 EPLLNNLGHVNRKLKKYEEALEFHKQAL 277
E ++ + K +++A + +
Sbjct: 339 EDFAIDVAKYYHERKNFQKASAYFLKVE 366
Score = 57.9 bits (140), Expect = 1e-09
Identities = 35/217 (16%), Positives = 71/217 (32%), Gaps = 29/217 (13%)
Query: 125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVI- 183
+ E DQ + Y++ L L + + RL+ ++ A +
Sbjct: 44 QMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEY 103
Query: 184 ---HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLG--------- 230
G+ Y A F +A SK+ + I A+ +
Sbjct: 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAE----FFFKMSESYYYMKQT 159
Query: 231 HKAED---KVKQLGGEIIADKWE--PLLNNLGHVNRKLKKYEEALEFHKQALVVA----- 280
+ + D + ++ E A + LK+YE+A+ ++A +A
Sbjct: 160 YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219
Query: 281 -PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316
+ T IG + + A+ YF + +A+ +
Sbjct: 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256
Score = 31.3 bits (71), Expect = 0.45
Identities = 20/191 (10%), Positives = 52/191 (27%), Gaps = 19/191 (9%)
Query: 39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
+ L+ A ++ A +A Y +G + + A
Sbjct: 191 ATNFLDLKQYEDAISHFQKAY-----SMAEAEKQ-PQLMGRTLYNIGLCKNSQSQYEDAI 244
Query: 99 RFLGKATSLDKLF------LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK----GCHLP 148
+ +A ++ + A+ + + D+A + + +L
Sbjct: 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304
Query: 149 ALYVGLECGLTNNARLASKFFDLALSIAHEDPFVI---HEMGVIAYQNHNYTVAENCFME 205
L+ A + F L + ++ ++ N+ A F++
Sbjct: 305 EFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364
Query: 206 ALSKVKQLGGE 216
+ + G
Sbjct: 365 VEQVRQLIQGG 375
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 59.3 bits (143), Expect = 6e-10
Identities = 44/298 (14%), Positives = 78/298 (26%), Gaps = 61/298 (20%)
Query: 43 EALENRALAADCY-----------KGALLADLFKLAHELVD----LYPDSAIAWYAVGCY 87
++ D Y K + + + + ++ A A G
Sbjct: 52 GLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKA 111
Query: 88 YYLIGRSDP-ARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNA-------- 138
+ P A L KA L+ + AW G + + + A + A
Sbjct: 112 LNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV 171
Query: 139 --FNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY 196
NL L L + + + + LA+ + D + +G
Sbjct: 172 SLQNL--SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILG--------- 220
Query: 197 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP----L 252
N ++ Q +A Q D+ L
Sbjct: 221 ----NAYLSLYFNTGQNPKIS-------------QQALSAYAQA---EKVDRKASSNPDL 260
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT 310
N +++ + Y EALE QA + P + L S + KT
Sbjct: 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318
Score = 40.0 bits (93), Expect = 0.001
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 252 LLNNLGHVNRKLKKY-EEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT 310
L G Y EA +A+ + P + +G + GD+ SA F
Sbjct: 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163
Query: 311 MALKRDD 317
+ ++
Sbjct: 164 LTHCKNK 170
Score = 30.0 bits (67), Expect = 1.4
Identities = 11/98 (11%), Positives = 23/98 (23%), Gaps = 12/98 (12%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
+ +++ E+ A + + A D P + R
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALD------------PAWPEPQQREQQLLEFLSRLTSL 311
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
GK + L H + Q+ +
Sbjct: 312 LESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQ 349
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 57.7 bits (139), Expect = 2e-09
Identities = 31/289 (10%), Positives = 63/289 (21%), Gaps = 26/289 (8%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
+ALE L P +A + +
Sbjct: 435 HDGGKQALETVQRLLPVLCQTH------------GLTPAQVVAIASHDGGKQALETVQQL 482
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
L +A L + A + + A L + G
Sbjct: 483 LPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 542
Query: 158 LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI 217
+ A + + I G +A +
Sbjct: 543 ALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH--------GL 594
Query: 218 IADKWEPLLNNLG--HKAEDKVKQLGGEIIADKWEP----LLNNLGHVNRKLKKYEEALE 271
+ + +N+G E + L A P + + + L+ + L
Sbjct: 595 TQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLP 654
Query: 272 FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
QA + P + G + + + + L ++ A
Sbjct: 655 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVA 703
Score = 55.0 bits (132), Expect = 2e-08
Identities = 36/277 (12%), Positives = 74/277 (26%), Gaps = 31/277 (11%)
Query: 58 ALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLM 117
A+ A L ++L P +A + + L +A L + A
Sbjct: 172 AVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 231
Query: 118 YGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNA----RLASKFFDLAL 173
+ + + A L + A+ A + A
Sbjct: 232 HDGGKQALETMQRLLPVLCQAHGL-PPDQVVAIA---SNIGGKQALETVQRLLPVLCQAH 287
Query: 174 SIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN-LGHK 232
+ + I G +A + D+ + ++ G +
Sbjct: 288 GLTPDQVVAIASHGGGKQALETVQRLLPVLCQAH--------GLTPDQVVAIASHDGGKQ 339
Query: 233 AEDKVKQLGGEIIADKWEPL---------LNNLGHVNRKLKKYEEALEFHKQALVVAPMK 283
A + V++L + + + + G + L+ + L QA + P +
Sbjct: 340 ALETVQRL----LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395
Query: 284 ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
G QAL + + + L D A
Sbjct: 396 VVAIASNGGKQAL-ETVQRLLPVLCQAHGLTPDQVVA 431
Score = 49.3 bits (117), Expect = 1e-06
Identities = 34/295 (11%), Positives = 68/295 (23%), Gaps = 38/295 (12%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
+AL A L PD +A + G +
Sbjct: 503 NIGGKQALATVQRLLPVLCQAH------------GLTPDQVVAIASNGGGKQALETVQRL 550
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
L +A L + A G + + A L + A+ G
Sbjct: 551 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL-TQVQVVAIA-SNIGG 608
Query: 158 LTN--NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG 215
+ A + I +A
Sbjct: 609 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAH-------- 660
Query: 216 EIIADKWEPLLNNLG-HKAEDKVKQLGGEIIADKWEPL---------LNNLGHVNRKLKK 265
+ D+ + +N G +A + V++L + + + + + L+
Sbjct: 661 GLTPDQVVAIASNGGGKQALETVQRL----LPVLCQAHGLTQEQVVAIASNNGGKQALET 716
Query: 266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
+ L QA + P + G + + + + L A
Sbjct: 717 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVA 771
Score = 43.9 bits (103), Expect = 6e-05
Identities = 43/319 (13%), Positives = 76/319 (23%), Gaps = 34/319 (10%)
Query: 23 FSQLQSEMKSALLLLKGRVYEALENRALA-----ADCYKGALLADLFKLAHELVDLYPDS 77
Q Q ++K + + +EAL A A L + ++ P++
Sbjct: 59 SQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEA 118
Query: 78 AIA-WYAVGCYY----YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAM 132
VG + L A G LD L G A+E H
Sbjct: 119 THEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRN 178
Query: 133 AAYFNAFNLFKGCHLPALYVGLECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIA 190
A NL + A+ G + A + I
Sbjct: 179 ALTGAPLNL-TPAQVVAIA-SNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGK 236
Query: 191 YQNHNYTVAENCFMEALS----KVKQLGGEIIADKWEPLLNNLGHKAE-----DKVKQLG 241
+A +V + I L + L
Sbjct: 237 QALETMQRLLPVLCQAHGLPPDQVVAIASNIGG------KQALETVQRLLPVLCQAHGLT 290
Query: 242 GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLD 301
+ + + + G + L+ + L QA + P + + +
Sbjct: 291 PDQVV-----AIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQ 345
Query: 302 SAVNYFHKTMALKRDDSFA 320
+ + L D A
Sbjct: 346 RLLPVLCQAHGLTPDQVVA 364
Score = 40.4 bits (94), Expect = 7e-04
Identities = 32/289 (11%), Positives = 61/289 (21%), Gaps = 60/289 (20%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
+ALE A L PD +A + G +
Sbjct: 639 HDGGKQALETVQRLLPVLCQAH------------GLTPDQVVAIASNGGGKQALETVQRL 686
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
L +A L +Q A + AL
Sbjct: 687 LPVLCQAHGLT-------------------QEQV-VAIAS-----NNGGKQAL------- 714
Query: 158 LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI 217
+ A + + I G +A +
Sbjct: 715 --ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH--------GL 764
Query: 218 IADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNL------GHVNRKLKKYEEALE 271
+ + +N+G K + Q ++ L + + L+ + L
Sbjct: 765 TPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLP 824
Query: 272 FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
QA + + + + + + L D A
Sbjct: 825 VLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVA 873
Score = 40.0 bits (93), Expect = 0.001
Identities = 28/276 (10%), Positives = 59/276 (21%), Gaps = 28/276 (10%)
Query: 58 ALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLM 117
ALL D +L + L + G + G +L + A
Sbjct: 138 ALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIAS 197
Query: 118 YGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARL--ASKFFDLALSI 175
+ + A L + G + A +
Sbjct: 198 NNGGKQALETVQRLLPVLCQAHGLTPA--QVVAIASHDGGKQALETMQRLLPVLCQAHGL 255
Query: 176 AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN------NL 229
+ I +A + D+ + + L
Sbjct: 256 PPDQVVAIASNIGGKQALETVQRLLPVLCQAH--------GLTPDQVVAIASHGGGKQAL 307
Query: 230 GHKAE-----DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 284
+ L + + + + + L+ + L QA + P +
Sbjct: 308 ETVQRLLPVLCQAHGLTPDQVV-----AIASHDGGKQALETVQRLLPVLCQAHGLTPDQV 362
Query: 285 STFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
G + + + + L D A
Sbjct: 363 VAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 398
Score = 35.8 bits (82), Expect = 0.023
Identities = 37/287 (12%), Positives = 69/287 (24%), Gaps = 23/287 (8%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
+ALE A L PD +A + G +
Sbjct: 707 NNGGKQALETVQRLLPVLCQAH------------GLTPDQVVAIASNGGGKQALETVQRL 754
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
L +A L + A + + L A V +
Sbjct: 755 LPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGL-----TLAQVVAI--A 807
Query: 158 LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI 217
+ A + L + + + + V N A L + Q G
Sbjct: 808 SNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 867
Query: 218 IADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFH 273
N G +A + V++L + D L + + L+ + L
Sbjct: 868 PDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVL 927
Query: 274 KQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
Q + P + + + + + L + A
Sbjct: 928 CQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVA 974
Score = 34.6 bits (79), Expect = 0.053
Identities = 28/286 (9%), Positives = 53/286 (18%), Gaps = 48/286 (16%)
Query: 35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
+ G +ALE A L +A + +
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAH------------GLTQVQVVAIASNIGGKQALETV 615
Query: 95 DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
L +A L + A + + + A L + G
Sbjct: 616 QRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 675
Query: 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214
+ A + E I +A
Sbjct: 676 GKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHG------ 729
Query: 215 GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK 274
L A + + G + L+ + L
Sbjct: 730 -----------LTPDQVVA-------------------IASNGGGKQALETVQRLLPVLC 759
Query: 275 QALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
QA + P + + + + + L A
Sbjct: 760 QAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVA 805
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 56.1 bits (136), Expect = 3e-09
Identities = 44/306 (14%), Positives = 86/306 (28%), Gaps = 58/306 (18%)
Query: 43 EALENRALAADC---YKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARR 99
+ A Y A+ ++ ++L +S + YY + + D A++
Sbjct: 4 DVEFRYADFLFKNNNYAEAI-----EVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQK 58
Query: 100 FLG---KATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC 156
+ + K + YG + + A+ Y A + +G
Sbjct: 59 DIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118
Query: 157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGE 216
N LA ++ + + DP V +E+G Y N Y A++ F++ L
Sbjct: 119 YNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN---- 174
Query: 217 IIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK---KYEEALEFH 273
I + N K A ++
Sbjct: 175 ----------------------------IYIGY----LWRARANAAQDPDTKQGLAKPYY 202
Query: 274 KQALVVAPMKAST--------FCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS 325
++ + V + I Y + D A + +AL + A L
Sbjct: 203 EKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262
Query: 326 YVIEQL 331
+E
Sbjct: 263 MKLEHH 268
Score = 48.4 bits (116), Expect = 1e-06
Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 23/182 (12%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
G++ +LA Y+ A+ D + +G Y+Y G A
Sbjct: 80 YGKILMKKGQDSLAIQQYQAAV------------DRDTTRLDMYGQIGSYFYNKGNFPLA 127
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL--- 154
+++ K + G ++ E+ +A +++ L ++ L+
Sbjct: 128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANA 187
Query: 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN--------HNYTVAENCFMEA 206
LA +++ + + + + A + + A+ +
Sbjct: 188 AQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247
Query: 207 LS 208
L+
Sbjct: 248 LA 249
Score = 44.6 bits (106), Expect = 2e-05
Identities = 28/256 (10%), Positives = 55/256 (21%), Gaps = 40/256 (15%)
Query: 34 LLLLKGRVYEALENRALAAD---CYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYL 90
L K RA+ Y A + V+ + + G
Sbjct: 29 LEAKKYNSPYIYNRRAVCYYELAKYDLAQKD--IETYFSKVNATKAKSADFEYYGKILMK 86
Query: 91 IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPAL 150
G+ A + A D L + G F + A+ P +
Sbjct: 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT--TDPKV 144
Query: 151 YVGLECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAY---QNHNYTVAENCFME 205
+ L N A F L + + +A+ + +
Sbjct: 145 FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204
Query: 206 ALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK 265
+ + + +A + + +
Sbjct: 205 LIE---------VCAPGGAKYKDELIEA-------------------NEYIAYYYTINRD 236
Query: 266 YEEALEFHKQALVVAP 281
+A K L + P
Sbjct: 237 KVKADAAWKNILALDP 252
Score = 38.0 bits (89), Expect = 0.003
Identities = 20/170 (11%), Positives = 42/170 (24%), Gaps = 23/170 (13%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
G + N LA + + +Y +G YY A
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQI------------RPTTTDPKVFYELGQAYYYNKEYVKA 161
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAV---ENEHDQAMAAYFNAFNLFKGCHLPA----- 149
K L +L + A + + A Y +
Sbjct: 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221
Query: 150 ---LYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY 196
Y+ + + A + L++ + I + + +H++
Sbjct: 222 EANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 52.9 bits (128), Expect = 3e-08
Identities = 31/281 (11%), Positives = 63/281 (22%), Gaps = 46/281 (16%)
Query: 43 EALENRALAAD---CYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARR 99
+ + + A+ + A +L+ D Y G + A
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEH--YNKA---WELHKDIT-YLNNRAAAEYEKGEYETAIS 59
Query: 100 FLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT 159
L A + + + SFA + ++ L
Sbjct: 60 TLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK-SLTEHRTADILTKL 118
Query: 160 NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIA 219
NA K + + E G + ++ A + E +
Sbjct: 119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK----------- 167
Query: 220 DKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 279
A + +N KL + EA+ +A+
Sbjct: 168 -------------------------RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202
Query: 280 APMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
P + Q + SA+ + +
Sbjct: 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 243
Score = 38.7 bits (91), Expect = 0.001
Identities = 31/246 (12%), Positives = 63/246 (25%), Gaps = 40/246 (16%)
Query: 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134
A A G +Y + D A KA L K + + E++ A++
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAIST 60
Query: 135 YFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH 194
+A + + NA + ++ H I +
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEY-YQKSLTEHRTADILTKLR 119
Query: 195 NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN 254
N + +K A++
Sbjct: 120 NAEKELKKAEAEA--------YVNPEK------------------------AEEA----R 143
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
G + A++ + + + AP A + A A+ +K A++
Sbjct: 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK--AIE 201
Query: 315 RDDSFA 320
+D +F
Sbjct: 202 KDPNFV 207
Score = 29.1 bits (66), Expect = 2.2
Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 12/98 (12%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
+G+ Y + A Y + P+ A + + A
Sbjct: 145 EGKEYFTKSDWPNAVKAYTEMIKRA------------PEDARGYSNRAAALAKLMSFPEA 192
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
KA D F+ A++ + E+ A+
Sbjct: 193 IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 49.3 bits (118), Expect = 9e-08
Identities = 13/67 (19%), Positives = 25/67 (37%)
Query: 69 ELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH 128
++ D+ + + +G Y + D A L A D + AW G + + +
Sbjct: 10 AMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR 69
Query: 129 DQAMAAY 135
A A+
Sbjct: 70 AGARQAW 76
Score = 38.1 bits (89), Expect = 6e-04
Identities = 13/65 (20%), Positives = 25/65 (38%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
L LG + ++++ AL + AL P + + +G GD A + +
Sbjct: 21 LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80
Query: 312 ALKRD 316
A +
Sbjct: 81 AAAQS 85
Score = 29.6 bits (67), Expect = 0.53
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 12/70 (17%)
Query: 39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
G+ Y E A + A +D P ++AW +G G AR
Sbjct: 26 GKTYAEHEQFDAALPHLRAA------------LDFDPTYSVAWKWLGKTLQGQGDRAGAR 73
Query: 99 RFLGKATSLD 108
+ +
Sbjct: 74 QAWESGLAAA 83
Score = 29.6 bits (67), Expect = 0.59
Identities = 9/65 (13%), Positives = 18/65 (27%)
Query: 267 EEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326
+ E + L +G A D+A+ + + S A L
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 327 VIEQL 331
++
Sbjct: 62 TLQGQ 66
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 51.8 bits (124), Expect = 2e-07
Identities = 28/200 (14%), Positives = 61/200 (30%), Gaps = 2/200 (1%)
Query: 65 KLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAV 124
V P +AW + +G + + + +L A G
Sbjct: 10 LQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT 69
Query: 125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIH 184
+ H +A A + AL++G A A+ + A + E+P++
Sbjct: 70 QQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA 129
Query: 185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI 244
++ + ++ + + + V Q G + + L + + + +
Sbjct: 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQ--GVGAVEPFAFLSEDASAAEQLACARTRAQA 187
Query: 245 IADKWEPLLNNLGHVNRKLK 264
IA PL L+
Sbjct: 188 IAASVRPLAPTRVRSKGPLR 207
Score = 50.2 bits (120), Expect = 5e-07
Identities = 17/169 (10%), Positives = 41/169 (24%), Gaps = 16/169 (9%)
Query: 165 ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEP 224
A+ +D + + T E L+ +
Sbjct: 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---------LHPGHPE 58
Query: 225 LLNNLGHKAEDKVKQLGGEIIADK-------WEPLLNNLGHVNRKLKKYEEALEFHKQAL 277
+ LG + + ++ + + LGH + E A + +A
Sbjct: 59 AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH 118
Query: 278 VVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326
+ P + + + D + + A A ++
Sbjct: 119 QLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAF 167
Score = 44.5 bits (105), Expect = 4e-05
Identities = 18/117 (15%), Positives = 25/117 (21%)
Query: 92 GRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY 151
L A AWLM + + A L G
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 152 VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208
+G A+ A A E P + +G A + A
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
Score = 37.1 bits (86), Expect = 0.008
Identities = 10/66 (15%), Positives = 18/66 (27%)
Query: 266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS 325
L + A+ P + + + GD + + +AL A L
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64
Query: 326 YVIEQL 331
V
Sbjct: 65 RVRWTQ 70
Score = 36.0 bits (83), Expect = 0.018
Identities = 14/119 (11%), Positives = 25/119 (21%), Gaps = 15/119 (12%)
Query: 33 ALLLLKGRVYEALE--NRALAAD-------------CYKGALLADLFKLAHELVDLYPDS 77
L G R LA + A+ L + D P+
Sbjct: 31 DAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90
Query: 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYF 136
+G G+++ A +A L + +
Sbjct: 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 51.0 bits (122), Expect = 2e-07
Identities = 19/171 (11%), Positives = 48/171 (28%), Gaps = 30/171 (17%)
Query: 184 HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG------------- 230
+ G++ A +A + G A L+ G
Sbjct: 80 EQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM---ALDRAGKLMEPLDLSKAVH 136
Query: 231 --HKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA------PM 282
+A + A + + + + +K++EA ++ + P
Sbjct: 137 LYQQAAAVFENEERLRQAAEL---IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193
Query: 283 KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE 333
+Q D +A ++ ++ F+ + +E L++
Sbjct: 194 CYKKCIAQVLVQLHRADYVAAQKCVRESYSI---PGFSGSEDCAALEDLLQ 241
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 51.1 bits (122), Expect = 2e-07
Identities = 54/336 (16%), Positives = 106/336 (31%), Gaps = 63/336 (18%)
Query: 26 LQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVG 85
E K+ + L + A +C + A +L + H S + W
Sbjct: 45 QNREFKATMCNLLAYLKHLKGQNEAALECLRKAE--ELIQQEHAD-QAEIRSLVTWGNYA 101
Query: 86 CYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC 145
YY +GR + ++ K + + F + + + + K
Sbjct: 102 WVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI-----------ESPELDCEEGWTRLK-- 148
Query: 146 HLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFME 205
CG N R A F+ AL ++P + + +Y+ N+ ++N +
Sbjct: 149 ----------CGGNQNER-AKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAI-D 196
Query: 206 ALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKW-------EP----LLN 254
L + +L + + L L K ++ E +K P +L
Sbjct: 197 PLRQAIRLNPD-----NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLR 251
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI-------------------QA 295
+ R+ + ++A+E K+AL P A C IG +
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311
Query: 296 LTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331
L + AV + K + ++L+ +
Sbjct: 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347
Score = 48.0 bits (114), Expect = 3e-06
Identities = 41/300 (13%), Positives = 69/300 (23%), Gaps = 68/300 (22%)
Query: 24 SQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYA 83
+L E L G E A C++ AL + P +
Sbjct: 136 PELDCEEGWTRLKCGGNQNER------AKVCFEKAL------------EKKPKNPEFTSG 177
Query: 84 VGCYYYLI---GRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFN 140
+ Y + S A L +A L+ ++ E +
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE------ 231
Query: 141 LFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAE 200
K + AL A V+ + A
Sbjct: 232 ------------------------GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAI 267
Query: 201 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN 260
+AL L +G KV Q+ N +
Sbjct: 268 ELLKKALE---------YIPNNAYLHCQIGCCYRAKVFQVMNL--------RENGMYGKR 310
Query: 261 RKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
+ L+ A+ K+A + + AL + A YF K + +
Sbjct: 311 KLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370
Score = 48.0 bits (114), Expect = 3e-06
Identities = 40/293 (13%), Positives = 67/293 (22%), Gaps = 43/293 (14%)
Query: 29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYY 88
+K L L ++ E E + AL + P + +Y
Sbjct: 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEAL------------EKAPGVTDVLRSAAKFY 257
Query: 89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLP 148
D A L KA G Y
Sbjct: 258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIG-------------CCYRAKVFQVMNLREN 304
Query: 149 ALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208
+Y + L A A V + + Y AE F + S
Sbjct: 305 GMYGKRK--LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362
Query: 209 KVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII----ADKWEPLLNNLGHVNRKLK 264
K E+ + L G+ ++K I K + KL+
Sbjct: 363 K------ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416
Query: 265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD 317
K + L + + ++Q L + A + +
Sbjct: 417 KIAK------MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 49.1 bits (118), Expect = 6e-07
Identities = 41/279 (14%), Positives = 71/279 (25%), Gaps = 75/279 (26%)
Query: 42 YEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFL 101
R Y+ A A F A ++ + AI + + + A F
Sbjct: 26 GGQQMGRGSEFGDYEKAAEA--FTKA---IEENKEDAIPYINFANLLSSVNELERALAFY 80
Query: 102 GKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNN 161
KA LD A+ G+ + V+ + +A
Sbjct: 81 DKALELDSSAATAYYGAGNVYVVKEMYKEAKDM--------------------------- 113
Query: 162 ARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK 221
F+ AL E+ + + +G + + +A A+
Sbjct: 114 -------FEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE------------- 153
Query: 222 WEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
LN +A G +EAL P
Sbjct: 154 ----LNENDTEA-------------------RFQFGMCLANEGMLDEALSQFAAVTEQDP 190
Query: 282 MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
A F G A + + A+ K + ++ D A
Sbjct: 191 GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229
Score = 43.7 bits (104), Expect = 3e-05
Identities = 32/211 (15%), Positives = 59/211 (27%), Gaps = 35/211 (16%)
Query: 125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIH 184
+ H + ++ + G E G A + F A+ ED
Sbjct: 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAA---EAFTKAIEENKEDAIPYI 61
Query: 185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI---IADKWEPLLNNLGHKAEDKVKQLG 241
+ + A + +AL E+ A + G+ +
Sbjct: 62 NFANLLSSVNELERALAFYDKAL--------ELDSSAATAY----YGAGN-VYVVKEMYK 108
Query: 242 GEII------------ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 289
D + LG V KL++ + AL + ++A+ +
Sbjct: 109 EAKDMFEKALRAGMENGDLF----YMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQ 164
Query: 290 IGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
G A G LD A++ F + A
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADA 195
Score = 34.0 bits (79), Expect = 0.045
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
G VY E A D ++ AL ++ +Y +G + + A
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKAL------------RAGMENGDLFYMLGTVLVKLEQPKLA 144
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNA 138
+L +A L++ A +G A E D+A++ +
Sbjct: 145 LPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV 185
Score = 32.9 bits (76), Expect = 0.099
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 12/104 (11%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
G V LE LA + A+ +L + A + G G D A
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAV------------ELNENDTEARFQFGMCLANEGMLDEA 178
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141
T D A+ G ++A + ++A+ A ++
Sbjct: 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222
Score = 28.6 bits (65), Expect = 2.2
Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 15/93 (16%)
Query: 38 KGRVYEALE--NRALA-----ADCY--KGALLADLFKLAHELVD------LYPDSAIAWY 82
+ AL RA+ + G LA+ L L P A A+Y
Sbjct: 138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFY 197
Query: 83 AVGCYYYLIGRSDPARRFLGKATSLDKLFLPAW 115
G Y + A L KA + + A
Sbjct: 198 NAGVTYAYKENREKALEMLDKAIDIQPDHMLAL 230
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 46.2 bits (111), Expect = 9e-07
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
NLG+ K Y+EA+E++++AL + P A + +G GD D A+ Y+ K + L
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
Query: 314 KRDDSFA 320
+++ A
Sbjct: 73 DPNNAEA 79
Score = 40.5 bits (96), Expect = 9e-05
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
NLG+ K Y+EA+E++++AL + P A + +G GD D A+ Y+ K + L
Sbjct: 47 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Query: 314 KRDDSFA 320
+++ A
Sbjct: 107 DPNNAEA 113
Score = 28.5 bits (65), Expect = 1.5
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134
+SA AWY +G YY G D A + KA LD AW G+++ + ++D+A+
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 135 YFNA 138
Y A
Sbjct: 66 YQKA 69
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 46.6 bits (111), Expect = 3e-06
Identities = 41/240 (17%), Positives = 76/240 (31%), Gaps = 50/240 (20%)
Query: 47 NRALAADC---YKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGK 103
N + A +KGAL + + + +GC Y ++ A + +
Sbjct: 11 NEGVLAADKKDWKGAL-DAFSAVQ-------DPHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 104 ATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNAR 163
+ + DK A+ G + ++D A+ A +G L
Sbjct: 63 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK------------ 110
Query: 164 LASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE 223
L L V++ + + + + AE A S K E
Sbjct: 111 ------ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM-----------KSE 153
Query: 224 PLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE---FHKQALVVA 280
P + + E KQ +EP++ +G + R ++ L + +A VVA
Sbjct: 154 PRHSKIDKAMECVWKQKL-------YEPVVIPVGRLFRPNERQVAQLAKKDYLGKATVVA 206
Score = 39.3 bits (92), Expect = 6e-04
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
L N G + K ++ AL+ + IG + + ++ A F +++
Sbjct: 9 LWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 65
Query: 313 LKRDDSFA 320
+ + A
Sbjct: 66 RDKHLAVA 73
Score = 32.4 bits (74), Expect = 0.13
Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 20/117 (17%)
Query: 165 ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEP 224
A K F +++ + G++ YQ Y +A EAL +++ G ++I K
Sbjct: 56 AEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR--GNQLIDYK--- 110
Query: 225 LLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
LG + E +L N+ + K +++++A E A +
Sbjct: 111 --------------ILGLQFKLFACE-VLYNIAFMYAKKEEWKKAEEQLALATSMKS 152
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 43.9 bits (105), Expect = 3e-06
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
NLG+ K Y+EA+E++++AL + P A + +G GD D A+ Y+ K + L
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
Query: 314 KRD 316
+
Sbjct: 73 DPN 75
Score = 25.8 bits (58), Expect = 8.6
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134
+SA AWY +G YY G D A + KA LD AW G+++ + ++D+A+
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 135 YFNAFNL 141
Y A L
Sbjct: 66 YQKALEL 72
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 45.1 bits (108), Expect = 3e-06
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
NLG+ K Y+EA+E++++AL + P A + +G GD D A+ Y+ K + L
Sbjct: 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64
Query: 314 KRDDSFA 320
+ A
Sbjct: 65 DPRSAEA 71
Score = 44.3 bits (106), Expect = 5e-06
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
NLG+ K Y+EA+E++++AL + P A + +G GD D A+ Y+ K + L
Sbjct: 39 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98
Query: 314 KRDDSFA 320
+ A
Sbjct: 99 DPRSAEA 105
Score = 32.4 bits (75), Expect = 0.073
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQAL 277
NLG+ K Y+EA+E++++AL
Sbjct: 107 YNLGNAYYKQGDYDEAIEYYQKAL 130
Score = 28.9 bits (66), Expect = 1.3
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 38 KGRVYEALE--NRALA-----ADCY--KGALLADLFKLAHELVDLY-------PDSAIAW 81
+G EA+E +AL A+ + G E ++ Y P SA AW
Sbjct: 14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPRSAEAW 72
Query: 82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141
Y +G YY G D A + KA LD AW G+++ + ++D+A+ Y A L
Sbjct: 73 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 46.3 bits (110), Expect = 4e-06
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 20/136 (14%)
Query: 185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI 244
+ A + A + F + + + D+ E K + +L
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTI--------ALNIDRTEMYYWTNVDKNSEISSKL---- 56
Query: 245 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAV 304
L +K + Y++A F+K+ L AP +Q G A+
Sbjct: 57 --------ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108
Query: 305 NYFHKTMALKRDDSFA 320
+ K + L+ D+ A
Sbjct: 109 RMYEKILQLEADNLAA 124
Score = 40.9 bits (96), Expect = 2e-04
Identities = 27/190 (14%), Positives = 48/190 (25%), Gaps = 45/190 (23%)
Query: 19 FFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSA 78
++ SE+ S L Y+ N A YK L P++
Sbjct: 41 YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL------------QKAPNNV 88
Query: 79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNA 138
A G+ A R K L+ L A + G+ + + E ++
Sbjct: 89 DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK------- 141
Query: 139 FNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTV 198
+ LS + + + G+ Y
Sbjct: 142 --------------------------KLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEK 175
Query: 199 AENCFMEALS 208
A N + +
Sbjct: 176 ARNSLQKVIL 185
Score = 40.5 bits (95), Expect = 3e-04
Identities = 25/218 (11%), Positives = 54/218 (24%), Gaps = 37/218 (16%)
Query: 114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLAL 173
L + ++ QA++ + L + + ++
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNI----------------DRTEM--YYWTNVD 47
Query: 174 SIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA 233
+ + E+ + +N NY A + E L A L +
Sbjct: 48 KNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ---------KAPNNVDCLEACA-EM 97
Query: 234 EDKVKQLGGEI--------IADKWEPLLNNLGHV-NRKLKKYEEALEFHKQALVVAPMKA 284
+ Q + + LG+ ++ ++ LE + L
Sbjct: 98 QVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ 157
Query: 285 STFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATT 322
G + T + A N K + T
Sbjct: 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 45.5 bits (109), Expect = 5e-06
Identities = 12/67 (17%), Positives = 19/67 (28%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
+LG K + E +++L AP +G D AV K
Sbjct: 46 LHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA 105
Query: 314 KRDDSFA 320
+
Sbjct: 106 NPINFNV 112
Score = 44.0 bits (105), Expect = 2e-05
Identities = 12/67 (17%), Positives = 27/67 (40%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
LG +++KY+ A+ + P+ + +G G D A++ F + L
Sbjct: 80 TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139
Query: 314 KRDDSFA 320
+ ++
Sbjct: 140 RPNEGKV 146
Score = 43.6 bits (104), Expect = 2e-05
Identities = 16/67 (23%), Positives = 27/67 (40%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
LG L +++EA++ K AL + P + I + G + A+ +F K L
Sbjct: 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173
Query: 314 KRDDSFA 320
S
Sbjct: 174 DEGASVE 180
Score = 42.4 bits (101), Expect = 5e-05
Identities = 11/67 (16%), Positives = 23/67 (34%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
+ G + K +Y +A+ +Q +G TG +D +++A
Sbjct: 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD 71
Query: 314 KRDDSFA 320
D+
Sbjct: 72 APDNVKV 78
Score = 35.1 bits (82), Expect = 0.017
Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 12/98 (12%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
KG + + A + D +G Y G D
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVY------------DADAFDVDVALHLGIAYVKTGAVDRG 61
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
L ++ + + + G ++ ++D A+
Sbjct: 62 TELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLL 99
Score = 32.4 bits (75), Expect = 0.10
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 12/104 (11%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
G Y ++ LA + P + + +G +GR D A
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVA------------EANPINFNVRFRLGVALDNLGRFDEA 129
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141
A L S+ H++A+ + A L
Sbjct: 130 IDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 43.2 bits (102), Expect = 1e-05
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 12/98 (12%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
+G L N A AA ++ + P+ AW ++G + A
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKE------------PEREEAWRSLGLTQAENEKDGLA 70
Query: 98 RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
L A LD + S E+ + A+A+
Sbjct: 71 IIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 108
Score = 37.8 bits (88), Expect = 8e-04
Identities = 10/62 (16%), Positives = 16/62 (25%)
Query: 80 AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAF 139
G + A + AW G + A + A+ A +A
Sbjct: 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78
Query: 140 NL 141
L
Sbjct: 79 ML 80
Score = 36.7 bits (85), Expect = 0.002
Identities = 7/61 (11%), Positives = 21/61 (34%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
+LG + +K A+ A ++ P + + + ++A+ +
Sbjct: 55 RSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114
Query: 314 K 314
+
Sbjct: 115 Q 115
Score = 35.5 bits (82), Expect = 0.005
Identities = 12/66 (18%), Positives = 18/66 (27%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
G KL EA + P + + +G QA A+ + L
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 315 RDDSFA 320
D
Sbjct: 82 PKDIAV 87
Score = 28.2 bits (63), Expect = 1.6
Identities = 16/99 (16%), Positives = 26/99 (26%)
Query: 110 LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFF 169
++ + G S +A A+ +GL LA
Sbjct: 15 MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74
Query: 170 DLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208
+ A + +D V + V HN A L
Sbjct: 75 NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113
Score = 26.3 bits (58), Expect = 7.2
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAP 281
L + AL + L+ P
Sbjct: 88 HAALAVSHTNEHNANAALASLRAWLLSQP 116
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 45.5 bits (107), Expect = 1e-05
Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG 92
AL+ + L+ + LAA L L + +I + + G
Sbjct: 240 ALVDIVRHSQHPLDEKQLAA-------LNTEIDNIVTL-PELNNLSIIYQIKAVSALVKG 291
Query: 93 RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141
++D + + + L+ +L +++ G + ++ + +A AY AFNL
Sbjct: 292 KTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNL 339
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 42.3 bits (100), Expect = 1e-05
Identities = 9/61 (14%), Positives = 20/61 (32%)
Query: 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134
P+ YA+ + + A + D ++ + G + + D A+
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 135 Y 135
Y
Sbjct: 64 Y 64
Score = 41.1 bits (97), Expect = 4e-05
Identities = 10/69 (14%), Positives = 25/69 (36%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
L + K AL ++ + P T+ +G + D A++ + + +
Sbjct: 9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68
Query: 312 ALKRDDSFA 320
+ R++
Sbjct: 69 EVAREEGTQ 77
Score = 28.8 bits (65), Expect = 0.90
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 12/71 (16%)
Query: 39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
+ + +N + A ++ + + PD +Y +G Y + R+D A
Sbjct: 14 AQEHLKHDNASRALALFEELV------------ETDPDYVGTYYHLGKLYERLDRTDDAI 61
Query: 99 RFLGKATSLDK 109
+ + +
Sbjct: 62 DTYAQGIEVAR 72
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 44.4 bits (106), Expect = 1e-05
Identities = 34/243 (13%), Positives = 59/243 (24%), Gaps = 52/243 (21%)
Query: 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134
+ +G Y +GR D A +A + A + + A+
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 135 YFNA-----------FNLFKGCHLPALYVGLECGLTNNARL--ASKFFDLALSIAHEDPF 181
L ALY E L A A +
Sbjct: 62 GKTLVARTPRYLGGYMVL--SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP 119
Query: 182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLG 241
+ + G++ AE +AL+ + D
Sbjct: 120 LHLQRGLVYALLGERDKAEASLKQALA---------LEDT-------------------- 150
Query: 242 GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLD 301
+ + L + + + +EAL + +AL AP L G +
Sbjct: 151 ----PEIR----SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE 202
Query: 302 SAV 304
A
Sbjct: 203 EAA 205
Score = 41.4 bits (98), Expect = 2e-04
Identities = 13/67 (19%), Positives = 22/67 (32%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
LG L +Y+ AL ++AL P + Q G ++ A+ +A
Sbjct: 9 LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68
Query: 314 KRDDSFA 320
Sbjct: 69 TPRYLGG 75
Score = 41.0 bits (97), Expect = 2e-04
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
G V L + ++A KQAL + + + G LD A+ + K +
Sbjct: 122 LQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQ 180
Query: 314 KRDDSFA 320
D
Sbjct: 181 APKDLDL 187
Score = 38.3 bits (90), Expect = 0.001
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 11/78 (14%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI-----------QALTGDLDS 302
L KL ALE K + P + + + G L+
Sbjct: 43 YWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQ 102
Query: 303 AVNYFHKTMALKRDDSFA 320
A++ + +
Sbjct: 103 ALSVLKDAERVNPRYAPL 120
Score = 34.0 bits (79), Expect = 0.042
Identities = 18/63 (28%), Positives = 24/63 (38%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
L R E+AL K A V P A G + AL G+ D A + +
Sbjct: 86 LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQAL 145
Query: 312 ALK 314
AL+
Sbjct: 146 ALE 148
Score = 32.5 bits (75), Expect = 0.15
Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 16/113 (14%)
Query: 38 KGRVYEALE--NRALA-----ADCY--KGALLADLFKLAHELVDLY------PDSAIAWY 82
KG + +AL A A + +G + A L + + D+
Sbjct: 97 KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD-KAEASLKQALALEDTPEIRS 155
Query: 83 AVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
A+ Y +GR D A KA L + Y + ++ + ++A A
Sbjct: 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAA 208
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 41.6 bits (98), Expect = 3e-05
Identities = 13/65 (20%), Positives = 20/65 (30%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
LG R L +Y +A + P + + G + V K +A
Sbjct: 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89
Query: 313 LKRDD 317
DD
Sbjct: 90 ETSDD 94
Score = 35.8 bits (83), Expect = 0.003
Identities = 11/88 (12%), Positives = 21/88 (23%), Gaps = 9/88 (10%)
Query: 51 AADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL 110
A Y+ A+ D A + +G + +G A L
Sbjct: 9 AVPYYEKAI---------ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN 59
Query: 111 FLPAWLMYGHSFAVENEHDQAMAAYFNA 138
+ Y ++Q +
Sbjct: 60 HQALRVFYAMVLYNLGRYEQGVELLLKI 87
Score = 33.5 bits (77), Expect = 0.025
Identities = 7/65 (10%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 263 LKKYEEALEFHKQAL---VVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF 319
L +A+ ++++A+ + A + +G G+ A + +
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 320 ATTML 324
Sbjct: 63 LRVFY 67
Score = 26.2 bits (58), Expect = 7.4
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
L V L +YE+ +E + +
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETS 92
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 42.5 bits (100), Expect = 5e-05
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 114 AWLMYGHSFAVENEHDQAMAAYFNAFNL------FKGCHLPALYVGLECGLTNNARLASK 167
W + G + +N++ ++ AY A L LY +T R
Sbjct: 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM-- 103
Query: 168 FFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208
D AL++ + + + A+ NY A + + +
Sbjct: 104 -IDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143
Score = 39.8 bits (93), Expect = 4e-04
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 15/104 (14%)
Query: 35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-- 92
L G Y + + + Y+ AL L ++A + A+ Y
Sbjct: 47 WALLGEYYLWQNDYSNSLLAYRQAL------------QLRGENAELYAALATVLYYQASQ 94
Query: 93 -RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
+ R + KA +LD + A ++ ++ + QA+ +
Sbjct: 95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138
Score = 29.1 bits (65), Expect = 1.5
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGD---LDSAVNYFHK 309
LG Y +L ++QAL + A + + + K
Sbjct: 47 WALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106
Query: 310 TMALKRDDSFATTML 324
+AL ++ A +L
Sbjct: 107 ALALDSNEITALMLL 121
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 42.8 bits (100), Expect = 8e-05
Identities = 36/286 (12%), Positives = 59/286 (20%), Gaps = 60/286 (20%)
Query: 24 SQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYA 83
E + R Y A + D E+ A
Sbjct: 26 KPSSPERDVERDVFLYRAYLAQRKYGVVLD---------------EIKPSSAPELQAVRM 70
Query: 84 VGCYYYLIGRSDPARRFLGK--ATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141
Y R D L + + S+D LM + + D A+ +L
Sbjct: 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSL 130
Query: 142 FKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN--HNYTVA 199
+ + L + LA K + ++ A
Sbjct: 131 ECMAMTVQILLKL-----DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185
Query: 200 ENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV 259
F E K LLN
Sbjct: 186 YYIFQEMADK------------------------------------CSPTLLLLNGQAAC 209
Query: 260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVN 305
+ ++E A ++AL T + + G N
Sbjct: 210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN 255
Score = 32.0 bits (72), Expect = 0.21
Identities = 22/252 (8%), Positives = 64/252 (25%), Gaps = 10/252 (3%)
Query: 82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141
+ V +Y+ G + ++ + + + +
Sbjct: 4 FDVKNAFYI-GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSA 62
Query: 142 FKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAEN 201
+ + L +A +A +++ S+ + + I + + N A
Sbjct: 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR 122
Query: 202 CFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR 261
+ S I L + A ++K++ + + V+
Sbjct: 123 TLHQGDSLECMAMTVQIL-----LKLDRLDLARKELKKM--QDQDEDATLTQLATAWVSL 175
Query: 262 KL--KKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF 319
+K ++A ++ G ++A + +
Sbjct: 176 AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235
Query: 320 ATTMLSYVIEQL 331
L + + L
Sbjct: 236 TLINLVVLSQHL 247
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 40.5 bits (96), Expect = 9e-05
Identities = 9/67 (13%), Positives = 27/67 (40%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
G + Y E+++ ++A+ + P ++ + G + AV+ ++ + +
Sbjct: 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV 69
Query: 314 KRDDSFA 320
D+
Sbjct: 70 IEDEYNK 76
Score = 30.9 bits (71), Expect = 0.17
Identities = 3/28 (10%), Positives = 7/28 (25%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAP 281
R ++ E E + +
Sbjct: 80 AAKADALRYIEGKEVEAEIAEARAKLEH 107
Score = 30.1 bits (69), Expect = 0.32
Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 2/109 (1%)
Query: 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134
+ +Y G Y G + KA LD WLM G + +++A+
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 135 YFNAFNLFKGCHLPALYVGLECGLTNNARL--ASKFFDLALSIAHEDPF 181
Y N+ + + ++ L ++ + + H
Sbjct: 63 YNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111
Score = 28.6 bits (65), Expect = 1.1
Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 14/106 (13%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
+G + N + D ++ A+ L P+ + W G Y + R + A
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAI------------QLDPEESKYWLMKGKALYNLERYEEA 59
Query: 98 RRFLGKATSL--DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141
++ D+ W + + L
Sbjct: 60 VDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 41.5 bits (97), Expect = 2e-04
Identities = 38/265 (14%), Positives = 73/265 (27%), Gaps = 50/265 (18%)
Query: 97 ARRFLGKATSLDKLFLPAW-LMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE 155
L +A +K +P+ M S + + ++A A +++
Sbjct: 4 PVELLKRA---EKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYR------------ 48
Query: 156 CGLTNNARLASKFFDLALSIA------HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSK 209
L LA F A E E N A + A+
Sbjct: 49 --LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI 106
Query: 210 VKQLGGEI--------IADKWEPLLNNLG------HKAEDKVKQLGGEIIADKWEPLLNN 255
G + + E L++ A + Q +++K
Sbjct: 107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK---CFIK 163
Query: 256 LGHVNRKLKKYEEALEFHKQALVVAPMK-------ASTFCCIGYIQALTGDLDSAVNYFH 308
+ +Y EA + + + + + F G Q D +A
Sbjct: 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223
Query: 309 KTMALKRDDSFATTMLSYVIEQLIE 333
+ D +FA + S ++ LI+
Sbjct: 224 E--GQSEDPNFADSRESNFLKSLID 246
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 41.2 bits (96), Expect = 3e-04
Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 19/152 (12%)
Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG 242
G ++ A + A++ + + K++ + + K
Sbjct: 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV------KN----- 230
Query: 243 EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS 302
P N+ KLK+Y+EA+ L G +A G +DS
Sbjct: 231 --------PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDS 282
Query: 303 AVNYFHKTMALKRDDSFATTMLSYVIEQLIEE 334
A + F K DD L + EQ
Sbjct: 283 ARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 38.4 bits (90), Expect = 6e-04
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI-------GYIQALTGDLDSAV 304
NN V + KK+ E ++F ++A+ V + + I G DL AV
Sbjct: 44 FYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAV 103
Query: 305 NYFHKTMALKRD 316
+FH++++ RD
Sbjct: 104 QWFHRSLSEFRD 115
Score = 34.9 bits (81), Expect = 0.009
Identities = 11/64 (17%), Positives = 26/64 (40%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
+LG+ K K +E+A + +A+ + P + + + V + K +
Sbjct: 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70
Query: 313 LKRD 316
+ R+
Sbjct: 71 VGRE 74
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 39.1 bits (92), Expect = 0.001
Identities = 7/69 (10%), Positives = 19/69 (27%), Gaps = 6/69 (8%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNY 306
+ K ++ + + P +T +G + G L++A
Sbjct: 215 WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL 274
Query: 307 FHKTMALKR 315
++
Sbjct: 275 EDCASRNRK 283
Score = 37.1 bits (87), Expect = 0.005
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA--------PMKASTFCCIGYIQALTGDLDSAV 304
LNNL + K KY+EA K+AL + P A + + G +
Sbjct: 88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147
Query: 305 NYFHKTMALKR 315
Y+ + + +
Sbjct: 148 YYYRRALEIYA 158
Score = 36.7 bits (86), Expect = 0.006
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 9/72 (12%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA---------PMKASTFCCIGYIQALTGDLDSA 303
NNL K KY++A +K+ L A + + +
Sbjct: 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDS 231
Query: 304 VNYFHKTMALKR 315
Y K
Sbjct: 232 APYGEYGSWYKA 243
Score = 33.7 bits (78), Expect = 0.058
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA--------PMKASTFCCIGYIQALTGDLDSAV 304
++ H + L A+ KQAL P A+ + + A
Sbjct: 4 SHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAA 63
Query: 305 NYFHKTMALKR 315
+ + +A++
Sbjct: 64 HLLNDALAIRE 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 39.1 bits (92), Expect = 0.001
Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 38/162 (23%)
Query: 184 HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGE---IIADKWEPLLNNLGH--------- 231
H + + Y VA +AL +++ G +A +LN L
Sbjct: 31 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVAT----MLNILALVYRDQNKYK 86
Query: 232 KAED--------KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA- 280
A + + K LG + +A LNNL + K KY+EA K+AL +
Sbjct: 87 DAANLLNDALAIREKTLGKDHPAVAA----TLNNLAVLYGKRGKYKEAEPLCKRALEIRE 142
Query: 281 -------PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR 315
P A + + G + Y+ + + + +
Sbjct: 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184
Score = 38.7 bits (91), Expect = 0.002
Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 6/69 (8%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNY 306
+ K ++ F + P +T +G + G ++A
Sbjct: 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL 300
Query: 307 FHKTMALKR 315
M ++
Sbjct: 301 EEAAMRSRK 309
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 9/72 (12%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA---------PMKASTFCCIGYIQALTGDLDSA 303
NNL K K+++A +K+ L A + + G
Sbjct: 198 KNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257
Query: 304 VNYFHKTMALKR 315
++ K
Sbjct: 258 TSFGEYGGWYKA 269
Score = 37.9 bits (89), Expect = 0.003
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA--------PMKASTFCCIGYIQALTGDLDSAV 304
L+NL +YE A+ KQAL P A+ + + A
Sbjct: 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA 89
Query: 305 NYFHKTMALKR 315
N + +A++
Sbjct: 90 NLLNDALAIRE 100
Score = 35.2 bits (82), Expect = 0.022
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 29/104 (27%)
Query: 195 NYTVAENCFMEALSKV--KQLGGE--IIADKWEPLLNNLGH---------KAED------ 235
+ AE + E L++ ++ G P+ +
Sbjct: 210 KFKQAETLYKEILTRAHEREFGSVDDENK----PIWMHAEEREECKGKQKDGTSFGEYGG 265
Query: 236 KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 277
K + + L NLG + R+ K+E A + A+
Sbjct: 266 WYKACKVDSPTVTT----TLKNLGALYRRQGKFEAAETLEEAAM 305
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 36.5 bits (85), Expect = 0.003
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI-------GYIQALTGDLDSAV 304
+ N V + Y + E ++A+ V + I G A+
Sbjct: 40 YITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAI 99
Query: 305 NYFHKTMALKRDDSFATTMLSYVIEQLIEES 335
++++K++A R E++++E
Sbjct: 100 HFYNKSLAEHRTPDVLKKC--QQAEKILKEQ 128
Score = 31.5 bits (72), Expect = 0.15
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
LG+ K K ++ AL+ + +A + P + + GD + K A
Sbjct: 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK--A 64
Query: 313 LKRDDSFATTMLSYV 327
++
Sbjct: 65 IEVGRENREDYRQIA 79
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 38.1 bits (88), Expect = 0.004
Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 25/160 (15%)
Query: 177 HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK 236
E ++ E G + ++ Y A + + +S L +E +
Sbjct: 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS----------------WLEMEYGLSEKE 308
Query: 237 VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP--MKASTFCCIGYIQ 294
K ++ NL KL++Y +A+E +AL + K + G Q
Sbjct: 309 SKASESFLL-----AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKG-LYRR-GEAQ 361
Query: 295 ALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEE 334
L + +SA F K + + + A +S ++ E
Sbjct: 362 LLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH 401
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.006
Identities = 69/383 (18%), Positives = 105/383 (27%), Gaps = 136/383 (35%)
Query: 6 LSLQEL----LGGEGV-SFFCWFSQLQSEMKSALLLLKGRV---YEA--LENR------- 48
L L E L G + + ++L E + L+ K + A + R
Sbjct: 86 LCLTEFENCYLEGNDIHALA---AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 49 -AL--AADCYKGALLA---------DLFKLAHELVDLYPDSAIAWYA--VGCYYYLIGRS 94
AL A L+A D F+ EL DLY Y VG LI S
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFE---ELRDLYQT-----YHVLVG---DLIKFS 191
Query: 95 DPA-RRFLGKATSLDKLF-----LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLP 148
+ +K+F + WL EN + Y +P
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWL--------ENPSNTPDKDYL--------LSIP 235
Query: 149 ALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208
+ G+ +AH + V+ + +T E L
Sbjct: 236 ISCPLI--GVI--------------QLAH---Y------VVTAKLLGFTPGE--LRSYLK 268
Query: 209 KVKQLGGEII-------ADKWEPLLNNL-------------GHKAEDKVKQLGGEIIADK 248
++ D WE ++ ++A L I+ D
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT-SLPPSILEDS 327
Query: 249 WE-------PLLN----NLGHVNRKLKKYEEALEFHKQ---ALVVAPMKASTFCCIGYIQ 294
E P+L+ V + K L KQ +LV G Q
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA---KNLVVSGPPQ 384
Query: 295 ALTGDLDSAVNYFHKTMALKRDD 317
+L G L+ K A D
Sbjct: 385 SLYG-LNLT---LRKAKAPSGLD 403
Score = 32.3 bits (73), Expect = 0.28
Identities = 43/265 (16%), Positives = 67/265 (25%), Gaps = 101/265 (38%)
Query: 90 LIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFA-VENEHDQAMAAYFNAFNLFKGCHLP 148
L S A+ +A D F YG S + + + +F KG +
Sbjct: 1635 LYKTSKAAQDVWNRA---DNHFKDT---YGFSILDIVINNPVNLTIHFGGE---KGKRIR 1685
Query: 149 ALYVGLECGLTNNARLAS-KFFD----------------------------LALSIAHED 179
Y + + +L + K F + A
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA--- 1742
Query: 180 PF-VIHEMGVIAYQNHNYTVA-----ENC----------FMEALSKVKQLGGEIIADKWE 223
F + G+I + T A E + V G
Sbjct: 1743 AFEDLKSKGLI---PADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG--------- 1790
Query: 224 PLLNNLGHKA--EDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
A D++ + +IA N G V +EAL++ VV
Sbjct: 1791 ----MTMQVAVPRDELGRSNYGMIA-------INPGRVAASFS--QEALQY-----VVER 1832
Query: 282 MKASTFCCIGYIQALTGDLDSAVNY 306
+ TG L VNY
Sbjct: 1833 -----------VGKRTGWLVEIVNY 1846
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 36.8 bits (85), Expect = 0.007
Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 22/152 (14%)
Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG 242
+ E G + ++ Y A + + +S L + ++ ++
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVS----------------WLEYESSFSNEEAQKAQA 193
Query: 243 EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS 302
+A NL + KL+ + A+E +AL + G D +
Sbjct: 194 LRLA-----SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL 248
Query: 303 AVNYFHKTMALKRDDSFATTMLSYVIEQLIEE 334
A F K + L ++ A T L+ V +Q I
Sbjct: 249 ARADFQKVLQLYPNNKAAKTQLA-VCQQRIRR 279
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 35.5 bits (82), Expect = 0.014
Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 20/152 (13%)
Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG 242
I E G ++ + A + EAL + + +
Sbjct: 41 IKEEGNEFFKKNEINEAIVKYKEALD----------------FFIHTEEWDDQILLDKKK 84
Query: 243 EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS 302
I NL K K Y +A++ + L + +G G L+
Sbjct: 85 NIEI----SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEE 140
Query: 303 AVNYFHKTMALKRDDSFATTMLSYVIEQLIEE 334
A +K +L ++ + +L E
Sbjct: 141 AKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 34.3 bits (79), Expect = 0.022
Identities = 21/161 (13%), Positives = 43/161 (26%), Gaps = 36/161 (22%)
Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG 242
+ + G + +Y A + + +AL+++ L E + +L
Sbjct: 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPG-------------EPEWVELDR 60
Query: 243 EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL------ 296
+ I L N+ + EA E + L +AL
Sbjct: 61 KNIP-----LYANMSQCYLNIGDLHEAEETSSEVLKREE---------TNEKALFRRAKA 106
Query: 297 ---TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEE 334
LD A + + ++ + E
Sbjct: 107 RIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 34.6 bits (79), Expect = 0.046
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 6/70 (8%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNY 306
+ LG V + +L +Q +A + I G L +A
Sbjct: 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET 115
Query: 307 FHKTMALKRD 316
K L +
Sbjct: 116 QEKAFQLINE 125
Score = 30.7 bits (69), Expect = 0.75
Identities = 21/208 (10%), Positives = 50/208 (24%), Gaps = 26/208 (12%)
Query: 26 LQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVG 85
+ M + L+ +V N A K AL + +A +G
Sbjct: 8 REDTMHAEFNALRAQVAINDGNPDEAERLAKLAL-------EELPPGWFYSRIVATSVLG 60
Query: 86 CYYYLIGRSDPARRFLGKATSLDK------LFLPAWLMYGHSFAVENEHDQAMAAYFNAF 139
+ G + + + + + L + + + A AF
Sbjct: 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 120
Query: 140 NLFKGCHLPALYVGLECGLT--------NNARLASKFFDLALSIA--HEDPFVIHEMGV- 188
L HL L + A + + ++ + + +
Sbjct: 121 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180
Query: 189 --IAYQNHNYTVAENCFMEALSKVKQLG 214
+ + A + + +
Sbjct: 181 IQCSLARGDLDNARSQLNRLENLLGNGK 208
Score = 27.3 bits (60), Expect = 7.7
Identities = 28/263 (10%), Positives = 56/263 (21%), Gaps = 52/263 (19%)
Query: 35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLY-PDSAIAWYAVGCYYYLIGR 93
L+ + + A A + + A +L +E P + R
Sbjct: 96 LIQQSEILFAQGFLQTAWETQEKAF-----QLINEQHLEQLPMHEFLVRIRAQLLWAWAR 150
Query: 94 SDPARRFLGKATSLDKLFLPAWLMYGHSFAV-----ENEHDQAMAAYFNAFNLFKGCHLP 148
D A + + P + + + + D A + NL
Sbjct: 151 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 210
Query: 149 ALYV----------GLECGLTNNAR-LASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT 197
+ ++ G A + H + +
Sbjct: 211 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 270
Query: 198 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG 257
AE E + L + L L
Sbjct: 271 PAEIVLEELNENARSLRL-------------MSDLNR-----------------NLLLLN 300
Query: 258 HVNRKLKKYEEALEFHKQALVVA 280
+ + + +A AL +A
Sbjct: 301 QLYWQAGRKSDAQRVLLDALKLA 323
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.072
Identities = 14/43 (32%), Positives = 14/43 (32%), Gaps = 23/43 (53%)
Query: 65 KLAHELVDLY-PDSAIAWYAVGCYYYLIGRSDPARRFLG-KAT 105
KL L LY DSA PA L KAT
Sbjct: 24 KLQASL-KLYADDSA-----------------PA---LAIKAT 45
Score = 31.1 bits (69), Expect = 0.26
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 41/69 (59%)
Query: 261 RKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
+ LKK + +L+ + A DSA +A+K A
Sbjct: 20 QALKKLQASLKLY------AD-------------------DSA-----PALAIK-----A 44
Query: 321 TTMLSYVIE 329
T +E
Sbjct: 45 T------ME 47
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 33.8 bits (76), Expect = 0.079
Identities = 12/63 (19%), Positives = 31/63 (49%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
L +LG + R + +A +++ A + P + + + + GD + + Y+ +++
Sbjct: 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213
Query: 312 ALK 314
A+K
Sbjct: 214 AVK 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 31.2 bits (71), Expect = 0.12
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPM-KASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
E AL+ ++ L P+ K + +G GD A+N + + L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 314 KRDDSFA 320
D
Sbjct: 65 NPDSPAL 71
Score = 28.5 bits (64), Expect = 0.97
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
+G+ RKL +++AL ++ A+ + P + +QA + +N+++K M
Sbjct: 39 YLMGNAYRKLGDWQKALNNYQSAIELNPDSPA-------LQAR-KMVMDILNFYNKDM 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.12
Identities = 46/328 (14%), Positives = 96/328 (29%), Gaps = 102/328 (31%)
Query: 46 ENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG---RSDPAR--RF 100
E ++L L L E++ P ++ +I R A +
Sbjct: 302 EVKSLLLKY----LDCRPQDLPREVLTTNP-RRLS---------IIAESIRDGLATWDNW 347
Query: 101 -------LGKA--TSLDKLFLPAWL--MYGHSFAV-------------------ENEHDQ 130
L +SL+ L PA M+ +V
Sbjct: 348 KHVNCDKLTTIIESSLNVLE-PAEYRKMF-DRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 131 AMAAYFNAFNLFKG------CHLPALYVGLECGLTNNARLASKFFD---LALSIAHEDPF 181
+ + ++L + +P++Y+ L+ L N L D + + +D
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 182 VIHEMG----VIAY------QNHNYTVAENC-----FMEALSKVKQLGGEIIADKWEPLL 226
+ I + T+ F+E K++ A +L
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ--KIRHDSTAWNASG--SIL 521
Query: 227 NNLGHKAEDKVKQLGGEIIADKWEP-LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 285
N L QL ++P + +N R + + L ++ L+ +
Sbjct: 522 NTLQ--------QL------KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK---- 563
Query: 286 TFCCIGYIQ-ALTGDLDSAVNYFHKTMA 312
+ + ++ AL + ++ HK +
Sbjct: 564 -YTDL--LRIALMAEDEAIFEEAHKQVQ 588
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 31.6 bits (72), Expect = 0.30
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT 310
+ N+G K+ ++ A++ +AL + P + D A+ K
Sbjct: 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA 333
Query: 311 MALKRDDSFATTMLSYVIEQLIEE 334
+ +D L V +Q I+
Sbjct: 334 QEIAPEDKAIQAELLKV-KQKIKA 356
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 31.7 bits (71), Expect = 0.31
Identities = 17/141 (12%), Positives = 38/141 (26%), Gaps = 36/141 (25%)
Query: 182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLG 241
+ + + I +N + F + L + L L E VK
Sbjct: 157 IENAIANIYAENGYLKKGIDLFEQILKQ----------------LEALHDNEEFDVK--- 197
Query: 242 GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQA 295
+ N +YEE+L +A+ ++ + + G
Sbjct: 198 ----------VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLR 247
Query: 296 LTGDLDSAV-NYFHKTMALKR 315
++ + + + K
Sbjct: 248 KLEYEEAEIEDAYKKASFFFD 268
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 30.3 bits (69), Expect = 0.42
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
N KL Y A++ ++A+ + P + + +G + AV Y+ K +
Sbjct: 48 YFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107
Query: 312 ALKRDDSFATTMLSYVIEQLIEESP 336
L D+ + L + E + E+P
Sbjct: 108 ELDPDNETYKSNLK-IAELKLREAP 131
Score = 29.1 bits (66), Expect = 1.1
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
L G+ K++ +E A+ F+ +A+ + P A FC + G+ AV + A
Sbjct: 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER--A 72
Query: 313 LKRDDSFA 320
+ D +++
Sbjct: 73 ICIDPAYS 80
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 30.6 bits (68), Expect = 0.76
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 12/95 (12%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVA--------PMKASTFCCIGYIQALTGDLDSA 303
+L+ L EEAL + + + P++ +G +Q G A
Sbjct: 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQA 390
Query: 304 VNYFHKTMALKR----DDSFATTMLSYVIEQLIEE 334
+ + R + L ++E+
Sbjct: 391 MKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 29.3 bits (65), Expect = 1.6
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 226 LNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA 276
L H A V+ + +W +L + LK+ +F
Sbjct: 74 LLREDHPARPTVESFQAAL-QTQWSWMLQLCCCIEAHLKENAAYFQFFSDV 123
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 29.3 bits (65), Expect = 2.0
Identities = 10/89 (11%), Positives = 27/89 (30%)
Query: 248 KWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYF 307
K + ++ + L+ + LEF L + ++ D+ + Y
Sbjct: 164 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV 223
Query: 308 HKTMALKRDDSFATTMLSYVIEQLIEESP 336
+ + ++ +VI +
Sbjct: 224 DQLLKEDVRNNSVWNQRYFVISNTTGYND 252
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA,
nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Length = 455
Score = 28.9 bits (64), Expect = 2.4
Identities = 23/171 (13%), Positives = 44/171 (25%), Gaps = 27/171 (15%)
Query: 125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIH 184
N + + L K F +AH + + +
Sbjct: 166 TNIPGKQRILLYLVNKLNNIYF--------RIESPQLCSNIFKNFQPKSMLAHFNEYQLD 217
Query: 185 E-------MGVIAYQNHNYTVAENCFMEALSKVKQLGG---------EIIADKWEPLLNN 228
+ +G N A F EA + L I + P
Sbjct: 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLI 277
Query: 229 LGHKAEDKV-KQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 278
LG + + + D W L ++ + N ++ L +++ L
Sbjct: 278 LGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGN--IQGVSLWLRQNERHLC 326
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 28.3 bits (62), Expect = 2.5
Identities = 5/36 (13%), Positives = 12/36 (33%)
Query: 246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
W + + L + EA+ K+ + +
Sbjct: 98 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export,
transcription; 2.12A {Homo sapiens}
Length = 203
Score = 28.3 bits (63), Expect = 3.1
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 186 MGVIAYQNHNYTVAENCFMEALSKVKQLGG---EIIADKWEPLLNNLGHKAEDKVKQLGG 242
+G A + ++ AE A + +I P+ LGH ++ +
Sbjct: 20 VGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLK--- 76
Query: 243 EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 278
+ ++ + + N L EAL H+ +
Sbjct: 77 KYHLMQFAEVTRAVSEGN--LLLLHEALAKHEAFFI 110
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 27.6 bits (61), Expect = 5.5
Identities = 16/117 (13%), Positives = 41/117 (35%), Gaps = 9/117 (7%)
Query: 226 LNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 285
L++ +++++Q + D W+ L ++L++ E +F +A
Sbjct: 66 LSDDNTIGKEEIQQRLAQF-VDHWKELKQLAAARGQRLEESLEYQQFVANV---EEEEAW 121
Query: 286 TFCCIGYIQA--LTGDLDSAVNYFHKTMALKRD-DSFATTM--LSYVIEQLIEESPP 337
+ + + L + K A + D + + E LI+++
Sbjct: 122 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNH 178
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 27.0 bits (60), Expect = 6.9
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 285
+ LG + Y+ A E +++ + S
Sbjct: 83 SRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114
>2q05_A Late protein H1, dual specificity protein phosphatase; structural
genomics, APC7320, P protein structure initiative; HET:
MSE; 2.57A {Vaccinia virus WR}
Length = 195
Score = 27.0 bits (60), Expect = 7.2
Identities = 3/27 (11%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 188 VIAY--QNHNYTVAENCFMEALSKVKQ 212
++AY + ++ F+ ++
Sbjct: 143 ILAYLMSKNKESLPMLYFLYVYHSMRD 169
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
Pro structure initiative; HET: MSE; 1.80A
{Chromobacterium violaceum}
Length = 224
Score = 27.1 bits (60), Expect = 7.7
Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 181 FVIHEMGVIAY--QNHNYTVAENCFMEALSKVKQLGGEIIADKWEP 224
+ V+ Y + N + F +++ + +A + E
Sbjct: 141 ILADAANVVHYSERLANTRDFFD-FDAIEKLLQEGEQQAMAAEREA 185
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 27.4 bits (60), Expect = 7.8
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 226 LNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA 276
L H A DK++ + + +W +L ++ LK+ +F ++A
Sbjct: 159 LVLNQHPASDKIEAYM-DTLQTQWSWILQITKCIDVHLKENAAYFQFFEEA 208
>3cm3_A Late protein H1, dual specificity protein phosphatase;
dual-specificity phosphatase, VH1, hydrolase; 1.32A
{Vaccinia virus} PDB: 2rf6_A 2p4d_A
Length = 176
Score = 27.0 bits (60), Expect = 8.1
Identities = 3/27 (11%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 188 VIAY--QNHNYTVAENCFMEALSKVKQ 212
++AY + ++ F+ ++
Sbjct: 126 ILAYLMSKNKESLPMLYFLYVYHSMRD 152
>1o59_A Allantoicase; YIR029W, structural genomics, JCSG, PSI, prote
structure initiative, joint center for structural
genomics, hydrolase; 2.40A {Saccharomyces cerevisiae}
SCOP: b.18.1.22 b.18.1.22 PDB: 1sg3_A
Length = 355
Score = 27.3 bits (60), Expect = 8.2
Identities = 25/161 (15%), Positives = 47/161 (29%), Gaps = 21/161 (13%)
Query: 68 HELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE 127
H + +YPD IA + + GR P + L + ++
Sbjct: 176 HIKLKMYPDGGIARFRL------YGRVVPPELKTKDHI----IDLAYVCNGAVALKYSDQ 225
Query: 128 HDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG 187
H + + NL + G E T +R + + E F+ +
Sbjct: 226 H------FGSVDNLLLPGRGHDMSDGWE---TKRSRQPGHTDWAVIQLGRESSFIEKIIV 276
Query: 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN 228
A+ N+ + +E K + W L+
Sbjct: 277 DTAHFRGNF--PQFITVEGCLKESESSENTGEGTWVELVGK 315
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.422
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,343,401
Number of extensions: 321371
Number of successful extensions: 1454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 975
Number of HSP's successfully gapped: 349
Length of query: 342
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 248
Effective length of database: 4,077,219
Effective search space: 1011150312
Effective search space used: 1011150312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)