RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3701
(342 letters)
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 74.3 bits (181), Expect = 2e-15
Identities = 49/258 (18%), Positives = 93/258 (36%), Gaps = 36/258 (13%)
Query: 74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMA 133
P+ A+AW +GC + G A KA +LD FL A++ G+ D+A+A
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224
Query: 134 AYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN 193
AY A +L + + LA + A+ + P + +
Sbjct: 225 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284
Query: 194 HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLL 253
+ AE+C+ AL L
Sbjct: 285 GSVAEAEDCYNTALRLCPT------------------------------------HADSL 308
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
NNL ++ R+ EEA+ +++AL V P A+ + + G L A+ ++ + + +
Sbjct: 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368
Query: 314 KRDDSFATTMLSYVIEQL 331
+ A + + ++++
Sbjct: 369 SPTFADAYSNMGNTLKEM 386
Score = 60.5 bits (145), Expect = 7e-11
Identities = 42/282 (14%), Positives = 100/282 (35%), Gaps = 2/282 (0%)
Query: 50 LAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK 109
LA Y+ + +L PD+ + ++ R D + F A +
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 110 LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFF 169
L A+ G+ + + +A+ Y +A L + + + A + +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 170 DLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNL 229
AL + V ++G + A+ C+++A+ + + N
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF--AVAWSNLGCVFNAQ 182
Query: 230 GHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 289
G + + NLG+V ++ + ++ A+ + +AL ++P A
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 290 IGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331
+ + G +D A++ + + + L+ A L+ +++
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284
Score = 42.7 bits (99), Expect = 4e-05
Identities = 26/178 (14%), Positives = 46/178 (25%), Gaps = 13/178 (7%)
Query: 15 EGVSFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLY 74
V+ + L L VY LA D Y+ A+ +L
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNL-ACVYYEQGLIDLAIDTYRRAI------------ELQ 267
Query: 75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134
P A+ + G A A L + + + ++A+
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 135 YFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ 192
Y A +F + + A + A+ I+ MG +
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
Score = 38.9 bits (89), Expect = 7e-04
Identities = 10/66 (15%), Positives = 18/66 (27%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
L H + +E A Q P + I LD + ++ +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 315 RDDSFA 320
+ A
Sbjct: 64 PLLAEA 69
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 54.4 bits (129), Expect = 4e-09
Identities = 34/222 (15%), Positives = 60/222 (27%)
Query: 60 LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYG 119
LA + ++ + A Y G Y +G AR +A ++ + G
Sbjct: 19 LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLG 78
Query: 120 HSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHED 179
D A A+ + L + L G+ +LA D
Sbjct: 79 IYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 138
Query: 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQ 239
PF + + + E K+ G I + + ++ K
Sbjct: 139 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADA 198
Query: 240 LGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
+A+ LG L + A K A+
Sbjct: 199 TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240
Score = 32.9 bits (73), Expect = 0.042
Identities = 17/80 (21%), Positives = 26/80 (32%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
LL G + L A QAL + P F +G G+ D+A F +
Sbjct: 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 98
Query: 312 ALKRDDSFATTMLSYVIEQL 331
L ++A +
Sbjct: 99 ELDPTYNYAHLNRGIALYYG 118
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 46.6 bits (110), Expect = 1e-06
Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 6/140 (4%)
Query: 49 ALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLD 108
AL+ + AL +L E + P A + + G + A L ++ L
Sbjct: 6 ALSEGQLQQAL-----ELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60
Query: 109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV-GLECGLTNNARLASK 167
+LP H A L + L V ++ + S+
Sbjct: 61 PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120
Query: 168 FFDLALSIAHEDPFVIHEMG 187
+ E F+ ++
Sbjct: 121 LALQIEELRQEKGFLANDTS 140
Score = 32.7 bits (74), Expect = 0.043
Identities = 12/66 (18%), Positives = 30/66 (45%)
Query: 265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML 324
+ ++ALE +A+ +P AS + + GD + A +++ L + + L
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70
Query: 325 SYVIEQ 330
++++
Sbjct: 71 RHLVKA 76
Score = 29.2 bits (65), Expect = 0.66
Identities = 7/73 (9%), Positives = 22/73 (30%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
L ++ + +E A E Q++ + P + ++
Sbjct: 32 LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAK 91
Query: 312 ALKRDDSFATTML 324
L ++ +++
Sbjct: 92 VLGENEELTKSLV 104
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 42.9 bits (99), Expect = 3e-05
Identities = 35/274 (12%), Positives = 65/274 (23%), Gaps = 27/274 (9%)
Query: 23 FSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWY 82
F + +G + A ++ A+ P AW
Sbjct: 10 FEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV------------QQDPKHMEAWQ 57
Query: 83 AVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF 142
+G + A L + L A + SF E+ QA +
Sbjct: 58 YLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT 117
Query: 143 KGCHLPALYVGLECGLTNNARL---------------ASKFFDLALSIAHEDPFVIHEMG 187
G + F A+ + + G
Sbjct: 118 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 177
Query: 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIAD 247
+ N + + + + ++ +K L N E +
Sbjct: 178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237
Query: 248 KWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
+ NLG L + EA+E +AL +
Sbjct: 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 271
Score = 30.5 bits (67), Expect = 0.30
Identities = 8/55 (14%), Positives = 17/55 (30%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHK 309
G + A+ + A+ P + +G QA A++ +
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 78
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 42.1 bits (98), Expect = 7e-05
Identities = 27/225 (12%), Positives = 70/225 (31%), Gaps = 16/225 (7%)
Query: 97 ARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC 156
+ ++L +A L + L + Y Y +
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQD---LYQKMLVTDLE------YALDKK 55
Query: 157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGE 216
+ A K L ++ + V A + A + + L ++ +
Sbjct: 56 VEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN- 114
Query: 217 IIADKWEPLLNNLGHKAEDKVK-----QLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE 271
+ + LG + + + + + L +LG + R + +A
Sbjct: 115 -VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAES 173
Query: 272 FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316
+++ A + P + + + + GD + + Y+ +++A+K
Sbjct: 174 YYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218
Score = 39.4 bits (91), Expect = 5e-04
Identities = 18/221 (8%), Positives = 54/221 (24%), Gaps = 26/221 (11%)
Query: 71 VDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQ 130
L D + + + K D ++ + E D
Sbjct: 13 EVLKADMTDSKLGPAEVWTSRQALQDLYQ---KMLVTD---------LEYALDKKVEQDL 60
Query: 131 AMAAYFNAFNLFKG----------CHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
A+ N +G + A + + ++
Sbjct: 61 WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120
Query: 181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240
++G+I+ + + + + S + Q + D + ++ +
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGD----IARYRNQTSQAESYYR 176
Query: 241 GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
+ N L + + + ++ +++ V
Sbjct: 177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217
Score = 38.6 bits (89), Expect = 9e-04
Identities = 13/148 (8%), Positives = 35/148 (23%), Gaps = 10/148 (6%)
Query: 192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI------- 244
+ + + F ++ ++ + NL E +
Sbjct: 54 KKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF 113
Query: 245 -IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSA 303
+ + LG ++ K ++ + +G I A
Sbjct: 114 NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQA 171
Query: 304 VNYFHKTMALKRDDSFATTMLSYVIEQL 331
+Y+ L + L+ +
Sbjct: 172 ESYYRHAAQLVPSNGQPYNQLAILASSK 199
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase
alpha-subunit, N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 334
Score = 39.6 bits (91), Expect = 3e-04
Identities = 30/251 (11%), Positives = 69/251 (27%), Gaps = 13/251 (5%)
Query: 38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
+ V + LE + L+ + + P S W+ + + A
Sbjct: 69 RREVLQHLETEKSPEESAA--LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 126
Query: 98 R--RFLGKATSLDKLFLPAWLMY-GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
R + D+ W + + +A + + Y
Sbjct: 127 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 186
Query: 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214
+ + L ++ ++ ++ + + A L + + L
Sbjct: 187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS---AWFYHRWLLGRAEPL- 242
Query: 215 GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPL-LNNLGHVNRKLKKYEEALEFH 273
+ + + + K+L +KW L + L L +E L++
Sbjct: 243 ---FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 299
Query: 274 KQALVVAPMKA 284
V PM+A
Sbjct: 300 STLKAVDPMRA 310
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 34.8 bits (79), Expect = 0.003
Identities = 12/79 (15%), Positives = 30/79 (37%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
LG+ K K ++ AL+ + +A + P + + GD + K +
Sbjct: 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66
Query: 313 LKRDDSFATTMLSYVIEQL 331
+ R++ ++ ++
Sbjct: 67 VGRENREDYRQIAKAYARI 85
Score = 34.1 bits (77), Expect = 0.007
Identities = 13/102 (12%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 185 EMGVIAYQNHNYTVAENCFMEALSK-----VKQLGGEIIADKWEPLLNNLGHKAEDKVKQ 239
E+G AY+ ++ A + +A + + +
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68
Query: 240 LGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
+ +G+ K +KY++A+ F+ ++L
Sbjct: 69 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase
alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 315
Score = 35.7 bits (81), Expect = 0.006
Identities = 11/79 (13%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI-QALTGDLDSAVNYFHKTMA 312
+ V ++ ++ E A + + A+ + + + + ++L DL +NY +
Sbjct: 47 DYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 106
Query: 313 LKRDDSFATTMLSYVIEQL 331
+ + ++E L
Sbjct: 107 EQPKNYQVWHHRRVLVEWL 125
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 33.7 bits (76), Expect = 0.018
Identities = 13/75 (17%), Positives = 27/75 (36%)
Query: 245 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAV 304
+ D + N+G + LK EA + +++ A + G + T D A+
Sbjct: 31 VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90
Query: 305 NYFHKTMALKRDDSF 319
+ + R +
Sbjct: 91 KDLKEALIQLRGNQL 105
Score = 31.0 bits (69), Expect = 0.13
Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 22/141 (15%)
Query: 161 NARLASKFFDLALS----IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG- 215
K + AL + + +G + N T AE F ++++ K L
Sbjct: 13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 72
Query: 216 ---------------EIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN 260
I D E L+ G++ D K LG + +L N+ +
Sbjct: 73 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY-KILGLQFKLFAC-EVLYNIAFMY 130
Query: 261 RKLKKYEEALEFHKQALVVAP 281
K +++++A E A +
Sbjct: 131 AKKEEWKKAEEQLALATSMKS 151
Score = 28.3 bits (62), Expect = 1.1
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
L N G + K ++ AL+ + IG + + ++ A F +++
Sbjct: 8 LWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 64
Query: 313 L 313
Sbjct: 65 R 65
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 33.4 bits (75), Expect = 0.020
Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Query: 185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI 244
E G + Y A C+ A+++ + + + +
Sbjct: 9 EQGNRLFVGRKYPEAAACYGRAITRNPLV--AVYYTNRALCYLKMQQPEQALADCRRALE 66
Query: 245 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
+ + LG +++ Y+EA+ ++A +A
Sbjct: 67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103
Score = 33.4 bits (75), Expect = 0.026
Identities = 13/79 (16%), Positives = 26/79 (32%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
L G+ +KY EA + +A+ P+ A + + A+ + +
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66
Query: 313 LKRDDSFATTMLSYVIEQL 331
L A L ++
Sbjct: 67 LDGQSVKAHFFLGQCQLEM 85
Score = 27.2 bits (59), Expect = 2.5
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 8/145 (5%)
Query: 68 HELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE 127
++L S A + +G + D A L +A SL K + + +
Sbjct: 62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD-----DIPSA 116
Query: 128 HDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG 187
A +N+ + L+ L + + +D + +
Sbjct: 117 LRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQA 176
Query: 188 VIAYQNHNYTVAENCFMEALSKVKQ 212
I ++ Y + E S+V +
Sbjct: 177 CIEAKHDKYMADMD---ELFSQVDE 198
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 33.8 bits (76), Expect = 0.026
Identities = 23/222 (10%), Positives = 52/222 (23%), Gaps = 26/222 (11%)
Query: 119 GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHE 178
+ + E + A ++ A + K + + A+
Sbjct: 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLEN 102
Query: 179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVK 238
+ G + L + + A +
Sbjct: 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKA-------------IDCYELAGEWYA 149
Query: 239 QLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST-------FCCIG 291
Q + +Y EA + + + + + + F G
Sbjct: 150 QDQSV---ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206
Query: 292 YIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE 333
Q D +A + D +FA + S ++ LI+
Sbjct: 207 LCQLAATDAVAAARTLQE--GQSEDPNFADSRESNFLKSLID 246
Score = 32.6 bits (73), Expect = 0.051
Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 15/107 (14%)
Query: 232 KAEDKVKQLGGEI------IADKWEP---LLNNLGHVNRKLKKYEEALEFHKQALVVA-- 280
+AE K G + + K+E L + R K+ A + +A
Sbjct: 10 RAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKK 69
Query: 281 ----PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTM 323
+T+ G+ +AV+ + +
Sbjct: 70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116
Score = 28.4 bits (62), Expect = 1.3
Identities = 20/159 (12%), Positives = 45/159 (28%), Gaps = 2/159 (1%)
Query: 18 SFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGAL-LADLFKLAHELVDLYPD 76
F + E + L + +Y + LA D + A E + Y +
Sbjct: 23 KLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVE 82
Query: 77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYF 136
+ + + G + + A + + + + +++ +A+ Y
Sbjct: 83 AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142
Query: 137 NAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSI 175
A + AL + L + A I
Sbjct: 143 LAGEWYAQDQSVALSNKCFIKCADLKAL-DGQYIEASDI 180
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 29.8 bits (66), Expect = 0.13
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Query: 185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN--NLGHKAEDKVKQLGG 242
E+G +AY +Y E E + G DK L ++ D K L
Sbjct: 10 ELGKVAYTEADYYHTELWM-EQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLL 68
Query: 243 EIIADKWEP----LLNNLGHVNRKLKK 265
+ +P NL + + K
Sbjct: 69 TKKLLELDPEHQRANGNLKYFEYIMAK 95
Score = 27.9 bits (61), Expect = 0.60
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 255 NLGHVNRKLKKYEEALEFHKQAL-------VVAPMKASTFCCIGYIQALTGDLDSAVNYF 307
LG V Y + +QAL + K S + Y GDLD A+
Sbjct: 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69
Query: 308 HKTMALKRDDSFATTMLSYVIEQLIEE 334
K + L + A L Y E ++ +
Sbjct: 70 KKLLELDPEHQRANGNLKY-FEYIMAK 95
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 30.0 bits (66), Expect = 0.15
Identities = 17/81 (20%), Positives = 31/81 (38%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
L G+ + ++AL+ + +A+ + P + A GD A KT+
Sbjct: 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 65
Query: 313 LKRDDSFATTMLSYVIEQLIE 333
LK D + + +E L
Sbjct: 66 LKPDWGKGYSRKAAALEFLNR 86
Score = 28.5 bits (62), Expect = 0.60
Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 2/113 (1%)
Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG 242
+ E G A N A C+ EA+ G +
Sbjct: 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAY--AKKGDYQKAYEDGCKT 63
Query: 243 EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQA 295
+ W + L ++EEA +++ L + ++A
Sbjct: 64 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 159
Score = 30.4 bits (67), Expect = 0.20
Identities = 15/79 (18%), Positives = 27/79 (34%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
L + K K YE A++F+ QA+ + P A + T A+ + +
Sbjct: 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 72
Query: 313 LKRDDSFATTMLSYVIEQL 331
L + + L
Sbjct: 73 LDKKYIKGYYRRAASNMAL 91
>d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA
{Haemophilus influenzae [TaxId: 727]}
Length = 128
Score = 28.8 bits (64), Expect = 0.41
Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 13/108 (12%)
Query: 127 EHDQAMAA-----YFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPF 181
EHD M +F+ F G HL + L L ++ + + + +D
Sbjct: 4 EHDHNMTYIQALRHFSTFAN--GLHLSKQPINLANLLALSSPIYRLELAMIGRLFAQDAE 61
Query: 182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNL 229
+ + I + + + + ++
Sbjct: 62 LYAD---IIMDKSENLAVIETLKQTYDEALTF---FENNDRQGFIDAF 103
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 168
Score = 28.4 bits (62), Expect = 0.76
Identities = 17/142 (11%), Positives = 37/142 (26%), Gaps = 13/142 (9%)
Query: 183 IHEMGVIAYQNHNYTVAENCFMEA------LSKVKQLGGEIIADKWEPLLNNLG------ 230
+ E G + ++ Y A + + + + + NL
Sbjct: 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 77
Query: 231 -HKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 289
+ + E L G + ++E A ++ L V P +
Sbjct: 78 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 137
Query: 290 IGYIQALTGDLDSAVNYFHKTM 311
I Q + + + M
Sbjct: 138 IFMCQKKAKEHNERDRRTYANM 159
>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein
{Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 160
Score = 27.7 bits (60), Expect = 1.5
Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 181 FVIHEMGVIAYQNHNY-TVAENCFMEALSKVKQLGGEII 218
F++ G +AY+ + E + E + + ++ GE++
Sbjct: 122 FIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAGELV 160
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 27.0 bits (59), Expect = 1.9
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 228 NLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
+ K +++L + ++ + L N +LK+YE+AL++ + L P
Sbjct: 50 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 103
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 27.2 bits (58), Expect = 2.8
Identities = 22/272 (8%), Positives = 47/272 (17%), Gaps = 24/272 (8%)
Query: 33 ALLLLKGRVYEALENRALAADCYKGAL---------------LADLFKLAHELVDLYPDS 77
+ G V + + L ++ L
Sbjct: 52 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW 111
Query: 78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFN 137
A P FL + + S E +
Sbjct: 112 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171
Query: 138 AFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT 197
L L+ + R + + +
Sbjct: 172 LQCLAMLIQCSLARGDLDNARSQLNR-LENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 230
Query: 198 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWE------- 250
A N + + + + + E+ +
Sbjct: 231 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 290
Query: 251 -PLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
L L + + + +A AL +A
Sbjct: 291 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322
Score = 26.4 bits (56), Expect = 5.7
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAP-----MKASTFCCIGYIQALTGDLDSAVNY 306
V +EA K AL P + +G + G+L ++
Sbjct: 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLAL 73
Query: 307 FHKTMAL 313
+T +
Sbjct: 74 MQQTEQM 80
>d1z01a2 d.129.3.3 (A:164-442) 2-oxo-1,2-dihydroquinoline
8-monooxygenase, oxygenase component OxoO {Pseudomonas
putida [TaxId: 303]}
Length = 279
Score = 27.0 bits (59), Expect = 3.6
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 271 EFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTM 323
VV M + F + A D+A HK + + +
Sbjct: 27 SVLDDNAVVHGMHRTGFG--NWRIACENGFDNAHILVHKDNTIVHAMDWVLPL 77
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl
isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Length = 153
Score = 26.1 bits (56), Expect = 4.1
Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 14/113 (12%)
Query: 183 IHEMGVIAYQNHNYTVAENCF---MEALSKVKQLGGEIIADKWEPL-----------LNN 228
I E G ++ + A + ++ ++ +I+ DK + + N
Sbjct: 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 79
Query: 229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
+ I L LG N EEA E +A + P
Sbjct: 80 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 132
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus)
[TaxId: 9913]}
Length = 169
Score = 26.2 bits (56), Expect = 4.2
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)
Query: 160 NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIA 219
+A + K D L I+ + + +G +++ N+ +A + + L V+
Sbjct: 11 EDADVDLKDVDKILLISED----LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAED 66
Query: 220 DKWEPL--------------LNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK 265
L + L I L + LK+
Sbjct: 67 ADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE 126
Query: 266 YEEALEFHKQALVVAP 281
Y++AL K+A +AP
Sbjct: 127 YDQALADLKKAQEIAP 142
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium
tepidum [TaxId: 1097]}
Length = 156
Score = 26.2 bits (56), Expect = 4.5
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 253 LNNLGHVNRKLK--KYEEALEFHKQALVVAP 281
L R+L +Y+EA ++A+ ++
Sbjct: 10 YLALSDAQRQLVAGEYDEAAANCRRAMEISH 40
>d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 273
Score = 26.5 bits (58), Expect = 4.5
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 275 QALVVAPMKASTFCCIGYIQALTGDL 300
+VV P ++ + + ++GD
Sbjct: 245 DIVVVDPDQSQLYGGAPVNRFISGDF 270
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 25.5 bits (56), Expect = 5.5
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAP 281
L L KL +Y A +
Sbjct: 76 LYYLTIGCYKLGEYSMAKRYVDTLFEHER 104
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit
tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 145
Score = 25.6 bits (54), Expect = 5.7
Identities = 4/40 (10%), Positives = 13/40 (32%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQ 294
+ ++ +E+ + + P+ A G +
Sbjct: 2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVL 41
>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 522
Score = 25.8 bits (56), Expect = 9.7
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 262 KLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG 298
K+Y+E L F ++AL V P KA G + G
Sbjct: 47 TTKEYQE-LNFQREALTVNPAKACQPL--GAVLCALG 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.422
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,277,199
Number of extensions: 58099
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 61
Length of query: 342
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,226,816
Effective search space: 314064896
Effective search space used: 314064896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)