BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3703
         (79 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16
           PE=1 SV=2
          Length = 620

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 52/74 (70%), Gaps = 7/74 (9%)

Query: 2   IKKYEVPSLSVLPD-------NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54
           +KKY  PS +V+P+       NLD++V+ AER YY C +K C+ +T  V+ +DP+H +CL
Sbjct: 209 LKKYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL 268

Query: 55  PLHIACLVEMNKSN 68
           P+HI  LVE+NK+N
Sbjct: 269 PVHIGTLVELNKAN 282


>sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolog OS=Mus musculus GN=Cdc16
           PE=2 SV=1
          Length = 620

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 51/74 (68%), Gaps = 7/74 (9%)

Query: 2   IKKYEVPSLSVLPD-------NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54
           +KKY  PS +V+P+       NLD++V+ AER YY C +K C+ +T  V+ +DP+H  CL
Sbjct: 209 LKKYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSTVMEKDPFHANCL 268

Query: 55  PLHIACLVEMNKSN 68
           P+HI  LVE+NK+N
Sbjct: 269 PVHIGTLVELNKAN 282


>sp|B3DNN5|CDC16_ARATH Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana
           GN=APC6 PE=2 SV=1
          Length = 543

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 9   SLSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN 68
           S+  L +N D++   AE  +  C Y+KCF +T  +L +DP+H  C  +H+A  +E+  SN
Sbjct: 233 SMITLANNTDLLACKAEYYHQCCEYQKCFELTAALLEKDPFHLKCTLVHLAAAMELGNSN 292


>sp|P09798|CDC16_YEAST Anaphase-promoting complex subunit CDC16 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=CDC16 PE=1
           SV=1
          Length = 840

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 13  LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN 68
           L DN+D++ +  +  Y  C + +C  + E VL  D ++T  LP +I CL E++  N
Sbjct: 459 LADNVDVVRSKVDICYTQCKFNECLELCETVLENDEFNTNILPAYIGCLYELSNKN 514


>sp|P41889|CUT9_SCHPO Anaphase-promoting complex subunit cut9 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=cut9 PE=1 SV=2
          Length = 671

 Score = 37.0 bits (84), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 7   VPSLSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK 66
           + S++ L  + D+++  A+ L+    +     IT ++L  DPY+    PLH+A L E  +
Sbjct: 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE 354

Query: 67  SN 68
            N
Sbjct: 355 KN 356


>sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2
           SV=1
          Length = 1107

 Score = 31.2 bits (69), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 19  MMVANAERLYYGCAYKKCFTITEQVL--SRDPYHT-ACLPLHIACLVEMNK 66
           ++ A AERLYYG +Y K F + + ++   R   HT + L +   C V   K
Sbjct: 62  IITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKK 112


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.132    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,291,746
Number of Sequences: 539616
Number of extensions: 877203
Number of successful extensions: 2321
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2312
Number of HSP's gapped (non-prelim): 9
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)