Query psy3703
Match_columns 79
No_of_seqs 105 out of 137
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 23:25:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1173|consensus 99.9 2E-22 4.4E-27 162.7 6.9 67 11-77 238-304 (611)
2 PF13414 TPR_11: TPR repeat; P 96.9 0.0029 6.4E-08 36.2 4.5 51 15-65 1-51 (69)
3 PF03704 BTAD: Bacterial trans 96.7 0.0051 1.1E-07 40.0 5.0 52 17-68 62-113 (146)
4 PF12895 Apc3: Anaphase-promot 96.6 0.00087 1.9E-08 40.3 1.0 51 16-67 24-74 (84)
5 PF13432 TPR_16: Tetratricopep 96.5 0.0056 1.2E-07 34.8 3.8 43 23-65 3-45 (65)
6 KOG1155|consensus 96.4 0.01 2.2E-07 48.8 6.4 67 11-77 256-322 (559)
7 PF00515 TPR_1: Tetratricopept 96.4 0.0084 1.8E-07 30.3 4.0 33 18-50 2-34 (34)
8 PF13432 TPR_16: Tetratricopep 96.4 0.0064 1.4E-07 34.5 3.8 38 14-51 28-65 (65)
9 PF14559 TPR_19: Tetratricopep 96.3 0.0056 1.2E-07 34.8 3.3 37 14-50 22-58 (68)
10 PF07719 TPR_2: Tetratricopept 96.3 0.016 3.4E-07 28.9 4.7 33 18-50 2-34 (34)
11 PF13428 TPR_14: Tetratricopep 96.2 0.0096 2.1E-07 32.3 3.7 37 17-53 1-37 (44)
12 PF13414 TPR_11: TPR repeat; P 95.8 0.016 3.5E-07 33.0 3.6 35 14-48 34-69 (69)
13 PF14559 TPR_19: Tetratricopep 95.4 0.02 4.4E-07 32.4 3.0 40 27-66 1-40 (68)
14 PF13371 TPR_9: Tetratricopept 94.9 0.06 1.3E-06 30.8 4.1 39 14-52 26-64 (73)
15 PF14853 Fis1_TPR_C: Fis1 C-te 94.9 0.085 1.8E-06 30.8 4.6 42 18-59 2-43 (53)
16 KOG1174|consensus 94.9 0.036 7.9E-07 45.4 4.0 48 11-58 226-273 (564)
17 TIGR02552 LcrH_SycD type III s 94.6 0.13 2.8E-06 32.3 5.2 40 15-54 49-88 (135)
18 smart00028 TPR Tetratricopepti 94.4 0.17 3.6E-06 22.6 4.2 32 18-49 2-33 (34)
19 PF13429 TPR_15: Tetratricopep 94.3 0.055 1.2E-06 38.6 3.4 58 12-69 141-198 (280)
20 PF13371 TPR_9: Tetratricopept 94.3 0.18 3.9E-06 28.8 5.0 43 24-66 2-44 (73)
21 TIGR02552 LcrH_SycD type III s 94.2 0.32 7E-06 30.5 6.4 49 13-61 81-129 (135)
22 PRK15359 type III secretion sy 94.1 0.18 3.9E-06 33.5 5.4 55 11-65 18-72 (144)
23 PF13174 TPR_6: Tetratricopept 94.1 0.14 3E-06 25.0 3.8 32 18-49 1-32 (33)
24 cd00189 TPR Tetratricopeptide 93.8 0.25 5.4E-06 26.5 4.7 51 15-65 32-82 (100)
25 PRK15359 type III secretion sy 92.8 0.55 1.2E-05 31.1 6.1 55 14-68 55-109 (144)
26 cd00189 TPR Tetratricopeptide 92.6 0.8 1.7E-05 24.4 5.6 36 19-54 2-37 (100)
27 PRK10370 formate-dependent nit 92.6 0.5 1.1E-05 33.2 5.9 53 14-66 104-159 (198)
28 KOG0624|consensus 92.5 0.25 5.3E-06 40.1 4.7 46 14-59 220-265 (504)
29 PLN03088 SGT1, suppressor of 92.2 0.54 1.2E-05 35.8 6.1 53 14-66 33-85 (356)
30 PF14863 Alkyl_sulf_dimr: Alky 92.1 0.34 7.4E-06 33.3 4.4 55 11-65 64-118 (141)
31 TIGR02521 type_IV_pilW type IV 92.1 0.82 1.8E-05 29.5 6.0 35 17-51 31-65 (234)
32 PF04733 Coatomer_E: Coatomer 91.9 0.36 7.8E-06 36.1 4.7 57 11-67 195-251 (290)
33 PLN03088 SGT1, suppressor of 91.9 0.46 9.9E-06 36.2 5.3 47 20-66 5-51 (356)
34 PF14561 TPR_20: Tetratricopep 91.8 0.52 1.1E-05 29.8 4.7 57 14-70 19-77 (90)
35 KOG2076|consensus 91.6 0.36 7.9E-06 42.0 4.9 55 11-66 133-187 (895)
36 TIGR02795 tol_pal_ybgF tol-pal 91.3 1.1 2.4E-05 26.8 5.7 50 17-66 39-91 (119)
37 TIGR02795 tol_pal_ybgF tol-pal 91.3 1.2 2.6E-05 26.6 5.9 50 17-66 2-54 (119)
38 TIGR02521 type_IV_pilW type IV 91.1 1.1 2.3E-05 28.9 5.8 43 15-57 167-209 (234)
39 TIGR02917 PEP_TPR_lipo putativ 91.0 0.9 2E-05 35.3 6.2 55 13-67 833-887 (899)
40 PRK15179 Vi polysaccharide bio 90.8 0.74 1.6E-05 38.7 5.9 54 14-67 117-170 (694)
41 PF13176 TPR_7: Tetratricopept 90.7 0.52 1.1E-05 24.5 3.4 31 20-50 2-34 (36)
42 TIGR00990 3a0801s09 mitochondr 90.5 0.81 1.8E-05 36.6 5.7 40 14-53 396-435 (615)
43 PRK12370 invasion protein regu 89.6 1.7 3.6E-05 34.8 6.8 52 14-65 369-420 (553)
44 PF13374 TPR_10: Tetratricopep 89.5 1.3 2.9E-05 22.2 4.3 28 18-45 3-30 (42)
45 PF07079 DUF1347: Protein of u 89.1 0.73 1.6E-05 38.1 4.5 45 20-65 465-509 (549)
46 PF13429 TPR_15: Tetratricopep 88.6 0.61 1.3E-05 33.2 3.4 54 14-67 211-264 (280)
47 TIGR02917 PEP_TPR_lipo putativ 87.9 2 4.4E-05 33.4 6.0 40 15-54 157-196 (899)
48 PRK11189 lipoprotein NlpI; Pro 87.7 2.6 5.6E-05 30.9 6.3 37 15-51 130-166 (296)
49 KOG1126|consensus 87.6 1.3 2.9E-05 37.4 5.2 59 18-76 354-412 (638)
50 PRK15174 Vi polysaccharide exp 87.3 2.1 4.5E-05 35.2 6.1 51 15-65 282-332 (656)
51 PRK15363 pathogenicity island 86.3 0.94 2E-05 31.9 3.2 49 14-62 32-80 (157)
52 PF13181 TPR_8: Tetratricopept 86.2 2.3 5.1E-05 20.8 3.9 31 18-48 2-32 (34)
53 PLN03098 LPA1 LOW PSII ACCUMUL 86.1 2.7 5.9E-05 34.2 6.1 53 11-63 69-123 (453)
54 PF13424 TPR_12: Tetratricopep 85.8 1.8 4E-05 24.9 3.9 48 18-65 6-53 (78)
55 PRK10370 formate-dependent nit 85.7 2.1 4.5E-05 30.0 4.7 41 13-53 140-180 (198)
56 TIGR00990 3a0801s09 mitochondr 84.7 3.7 8E-05 32.9 6.3 51 15-65 431-481 (615)
57 PF07720 TPR_3: Tetratricopept 83.7 4.7 0.0001 21.6 4.6 34 17-50 1-36 (36)
58 KOG0551|consensus 83.6 2 4.3E-05 34.4 4.2 52 15-66 113-168 (390)
59 PRK11189 lipoprotein NlpI; Pro 82.6 3.7 8.1E-05 30.1 5.1 53 14-66 95-147 (296)
60 PRK11447 cellulose synthase su 82.4 3.9 8.4E-05 35.6 5.9 50 15-64 601-650 (1157)
61 PRK12370 invasion protein regu 82.0 5.1 0.00011 32.0 6.0 53 14-66 335-387 (553)
62 PRK02603 photosystem I assembl 81.5 5.5 0.00012 26.6 5.3 49 17-65 72-120 (172)
63 TIGR03302 OM_YfiO outer membra 80.9 7.1 0.00015 26.7 5.8 38 14-51 30-67 (235)
64 KOG3081|consensus 80.6 5.3 0.00011 31.1 5.5 55 13-67 203-257 (299)
65 TIGR00540 hemY_coli hemY prote 80.6 6.2 0.00013 30.1 5.9 52 17-68 153-204 (409)
66 cd05804 StaR_like StaR_like; a 80.3 8.6 0.00019 27.7 6.3 47 19-65 116-162 (355)
67 CHL00033 ycf3 photosystem I as 79.5 8.3 0.00018 25.5 5.6 45 18-62 73-117 (168)
68 COG4235 Cytochrome c biogenesi 79.5 7.1 0.00015 30.0 5.8 54 12-65 185-241 (287)
69 PRK15174 Vi polysaccharide exp 79.0 5.9 0.00013 32.5 5.6 53 14-66 243-299 (656)
70 COG5536 BET4 Protein prenyltra 78.7 0.75 1.6E-05 36.0 0.3 43 21-63 154-199 (328)
71 PRK10049 pgaA outer membrane p 78.5 8.6 0.00019 32.0 6.5 39 14-52 390-428 (765)
72 PF13512 TPR_18: Tetratricopep 78.3 5.9 0.00013 27.5 4.7 48 18-65 48-96 (142)
73 PRK04778 septation ring format 78.0 3.2 6.9E-05 33.8 3.8 34 16-49 518-552 (569)
74 PF09295 ChAPs: ChAPs (Chs5p-A 77.8 8.1 0.00018 30.6 5.9 59 13-71 230-289 (395)
75 PF06160 EzrA: Septation ring 77.7 3.9 8.5E-05 33.3 4.2 34 16-49 514-549 (560)
76 COG3629 DnrI DNA-binding trans 77.7 4.8 0.00011 30.7 4.5 45 17-61 153-197 (280)
77 PF12895 Apc3: Anaphase-promot 77.7 2.7 5.9E-05 24.8 2.5 38 29-66 1-40 (84)
78 PF12569 NARP1: NMDA receptor- 77.2 5.9 0.00013 32.4 5.1 51 11-61 32-82 (517)
79 PF13431 TPR_17: Tetratricopep 75.8 5.4 0.00012 20.6 3.1 24 14-37 10-33 (34)
80 TIGR00540 hemY_coli hemY prote 75.7 14 0.0003 28.2 6.5 40 14-53 260-299 (409)
81 KOG2002|consensus 75.0 9.8 0.00021 33.9 6.1 51 13-63 712-762 (1018)
82 PRK11788 tetratricopeptide rep 75.0 9.4 0.0002 27.8 5.2 35 16-50 213-247 (389)
83 PRK11447 cellulose synthase su 74.8 9.6 0.00021 33.2 6.0 40 14-53 634-673 (1157)
84 KOG2758|consensus 74.0 4.2 9.1E-05 32.7 3.4 48 18-72 289-339 (432)
85 PF04781 DUF627: Protein of un 73.2 8.8 0.00019 25.7 4.3 32 23-54 2-33 (111)
86 PF13525 YfiO: Outer membrane 73.2 8.9 0.00019 26.6 4.6 36 17-52 42-77 (203)
87 PRK10747 putative protoheme IX 72.7 10 0.00022 29.0 5.1 43 12-54 323-365 (398)
88 TIGR03302 OM_YfiO outer membra 72.6 9.9 0.00021 26.0 4.6 35 18-52 71-105 (235)
89 KOG2376|consensus 72.5 6.2 0.00014 33.5 4.2 38 11-48 103-141 (652)
90 KOG4340|consensus 71.4 2.5 5.3E-05 34.0 1.5 46 20-65 81-126 (459)
91 PRK10049 pgaA outer membrane p 71.1 14 0.0003 30.8 5.9 47 19-65 51-97 (765)
92 COG4477 EzrA Negative regulato 70.7 5.4 0.00012 33.4 3.4 31 16-46 517-548 (570)
93 PF12688 TPR_5: Tetratrico pep 70.4 11 0.00024 24.9 4.3 57 11-67 30-91 (120)
94 PRK10866 outer membrane biogen 69.6 12 0.00027 27.1 4.8 32 21-52 73-104 (243)
95 PRK10866 outer membrane biogen 69.5 14 0.0003 26.8 5.0 37 15-51 30-66 (243)
96 KOG4626|consensus 69.5 7.6 0.00017 33.9 4.1 48 18-65 49-96 (966)
97 PRK11788 tetratricopeptide rep 69.2 14 0.0003 27.0 5.0 27 24-50 114-140 (389)
98 PRK09782 bacteriophage N4 rece 69.1 17 0.00037 32.0 6.3 39 15-53 641-679 (987)
99 PF13525 YfiO: Outer membrane 69.0 13 0.00027 25.8 4.6 38 15-52 3-40 (203)
100 PF07721 TPR_4: Tetratricopept 67.6 11 0.00024 18.1 3.0 23 19-41 3-25 (26)
101 cd05804 StaR_like StaR_like; a 66.5 17 0.00037 26.1 5.0 40 16-55 42-81 (355)
102 PRK02603 photosystem I assembl 65.4 22 0.00049 23.6 5.1 37 15-51 33-69 (172)
103 PRK10803 tol-pal system protei 63.5 19 0.0004 26.7 4.8 35 17-51 180-214 (263)
104 KOG1129|consensus 62.7 13 0.00029 30.2 4.1 44 21-64 8-51 (478)
105 PF09613 HrpB1_HrpK: Bacterial 61.5 43 0.00094 23.6 6.1 52 15-66 42-93 (160)
106 PLN02789 farnesyltranstransfer 61.2 18 0.00039 27.5 4.4 50 15-64 140-189 (320)
107 PF09976 TPR_21: Tetratricopep 61.1 24 0.00052 22.8 4.5 32 17-48 48-79 (145)
108 PRK14574 hmsH outer membrane p 61.1 32 0.00069 29.7 6.3 53 14-66 31-83 (822)
109 PRK15179 Vi polysaccharide bio 61.0 24 0.00051 29.9 5.4 53 14-66 83-135 (694)
110 PRK10747 putative protoheme IX 60.2 28 0.00061 26.6 5.4 45 22-66 158-202 (398)
111 PRK14574 hmsH outer membrane p 59.9 28 0.0006 30.1 5.7 37 19-55 104-140 (822)
112 PRK15331 chaperone protein Sic 59.1 36 0.00079 24.2 5.4 47 17-64 37-83 (165)
113 PF13838 Clathrin_H_link: Clat 58.6 30 0.00066 21.1 4.3 30 12-41 1-30 (66)
114 PRK09782 bacteriophage N4 rece 57.0 25 0.00053 31.0 5.0 37 14-50 75-111 (987)
115 COG3071 HemY Uncharacterized e 56.6 36 0.00077 27.6 5.5 58 14-71 150-207 (400)
116 COG5010 TadD Flp pilus assembl 55.8 53 0.0012 25.0 6.1 52 16-67 99-150 (257)
117 PF11207 DUF2989: Protein of u 53.4 14 0.0003 27.2 2.6 27 14-40 175-201 (203)
118 COG3071 HemY Uncharacterized e 52.3 36 0.00077 27.6 4.9 50 11-62 257-306 (400)
119 COG3947 Response regulator con 52.2 42 0.00091 26.8 5.2 48 20-67 282-329 (361)
120 KOG2076|consensus 52.0 41 0.0009 29.8 5.6 54 13-66 410-464 (895)
121 KOG0545|consensus 51.7 17 0.00037 28.4 3.0 40 15-54 228-267 (329)
122 TIGR03504 FimV_Cterm FimV C-te 51.1 35 0.00076 19.0 3.5 28 21-48 3-30 (44)
123 KOG2796|consensus 51.0 38 0.00082 26.9 4.8 48 20-67 289-338 (366)
124 PF01239 PPTA: Protein prenylt 49.9 10 0.00023 18.8 1.1 18 36-53 2-19 (31)
125 COG2956 Predicted N-acetylgluc 49.2 25 0.00054 28.3 3.6 44 23-66 220-264 (389)
126 KOG3060|consensus 49.1 70 0.0015 24.9 5.9 56 12-67 81-136 (289)
127 KOG1156|consensus 49.0 28 0.0006 30.0 4.0 49 20-68 10-58 (700)
128 COG4783 Putative Zn-dependent 49.0 87 0.0019 26.0 6.7 52 12-64 335-386 (484)
129 KOG0543|consensus 48.3 66 0.0014 26.0 5.8 47 14-61 288-334 (397)
130 PF09477 Type_III_YscG: Bacter 47.9 63 0.0014 22.0 4.9 47 19-70 42-88 (116)
131 PF03745 DUF309: Domain of unk 47.6 38 0.00083 19.9 3.5 28 21-48 3-30 (62)
132 PF13512 TPR_18: Tetratricopep 46.6 76 0.0016 21.9 5.3 38 15-52 8-45 (142)
133 COG3118 Thioredoxin domain-con 45.9 68 0.0015 25.1 5.4 52 16-67 133-184 (304)
134 COG4700 Uncharacterized protei 44.2 59 0.0013 24.6 4.7 39 11-49 118-156 (251)
135 PF06972 DUF1296: Protein of u 43.8 11 0.00023 23.0 0.6 15 37-51 36-50 (60)
136 COG3063 PilF Tfp pilus assembl 43.1 52 0.0011 25.1 4.3 34 18-51 36-69 (250)
137 KOG0550|consensus 40.6 41 0.0009 27.8 3.7 36 19-54 251-286 (486)
138 TIGR02710 CRISPR-associated pr 40.5 53 0.0012 26.2 4.2 30 19-48 132-161 (380)
139 PF12921 ATP13: Mitochondrial 39.9 1.1E+02 0.0024 20.2 5.2 40 10-49 45-84 (126)
140 KOG4648|consensus 39.0 34 0.00073 28.2 3.0 37 24-61 104-140 (536)
141 PF09670 Cas_Cas02710: CRISPR- 39.0 59 0.0013 25.3 4.2 33 18-50 132-164 (379)
142 KOG3785|consensus 38.9 29 0.00063 28.7 2.6 53 11-64 145-198 (557)
143 CHL00033 ycf3 photosystem I as 38.8 1.1E+02 0.0024 20.0 5.8 49 16-64 34-84 (168)
144 PF05843 Suf: Suppressor of fo 38.3 62 0.0013 23.7 4.1 52 15-66 33-85 (280)
145 PF08631 SPO22: Meiosis protei 37.9 59 0.0013 23.7 3.9 27 18-44 247-273 (278)
146 KOG0543|consensus 36.5 58 0.0012 26.3 3.9 35 20-54 260-294 (397)
147 KOG4340|consensus 36.2 59 0.0013 26.4 3.9 51 14-64 175-243 (459)
148 PRK14720 transcript cleavage f 35.8 59 0.0013 28.8 4.1 49 13-62 112-160 (906)
149 KOG3824|consensus 35.7 60 0.0013 26.4 3.8 36 19-54 118-153 (472)
150 PRK10153 DNA-binding transcrip 35.6 1.3E+02 0.0028 24.5 5.8 32 17-48 420-451 (517)
151 KOG2002|consensus 34.9 61 0.0013 29.2 4.0 34 14-47 267-300 (1018)
152 KOG0495|consensus 34.1 1.2E+02 0.0026 26.8 5.6 54 12-65 812-865 (913)
153 PRK10803 tol-pal system protei 34.1 90 0.0019 23.1 4.4 37 15-51 215-251 (263)
154 PF07980 SusD: SusD family; I 34.0 99 0.0021 21.1 4.4 30 17-46 133-162 (266)
155 KOG3785|consensus 33.1 1.1E+02 0.0024 25.4 5.0 43 17-60 57-99 (557)
156 TIGR02508 type_III_yscG type I 32.8 64 0.0014 21.9 3.1 46 19-69 41-86 (115)
157 PF12862 Apc5: Anaphase-promot 32.8 1.2E+02 0.0026 18.5 4.2 47 20-66 44-92 (94)
158 PF04910 Tcf25: Transcriptiona 32.6 1.3E+02 0.0028 23.3 5.2 48 11-58 94-145 (360)
159 KOG1129|consensus 32.1 86 0.0019 25.7 4.2 44 11-54 284-327 (478)
160 KOG0624|consensus 31.9 1.1E+02 0.0024 25.2 4.8 49 17-65 155-203 (504)
161 COG4783 Putative Zn-dependent 31.8 87 0.0019 26.0 4.3 41 11-51 419-459 (484)
162 KOG1127|consensus 31.6 75 0.0016 29.1 4.1 32 21-52 6-37 (1238)
163 PF05944 Phage_term_smal: Phag 31.2 84 0.0018 21.4 3.5 47 13-59 44-94 (132)
164 PF09427 DUF2014: Domain of un 30.9 94 0.002 23.8 4.1 33 31-65 102-134 (260)
165 PF11817 Foie-gras_1: Foie gra 30.6 1E+02 0.0022 22.2 4.1 49 19-67 180-234 (247)
166 PF13643 DUF4145: Domain of un 29.8 89 0.0019 18.3 3.2 22 23-45 2-23 (87)
167 PF00023 Ank: Ankyrin repeat H 29.3 37 0.0008 16.7 1.2 11 53-63 3-13 (33)
168 PF09295 ChAPs: ChAPs (Chs5p-A 28.4 1.8E+02 0.0038 23.1 5.4 49 16-64 199-247 (395)
169 PRK14720 transcript cleavage f 28.3 1.7E+02 0.0038 26.0 5.7 59 13-71 219-277 (906)
170 KOG0775|consensus 28.1 57 0.0012 25.5 2.5 39 8-50 90-128 (304)
171 COG3118 Thioredoxin domain-con 27.9 1.3E+02 0.0028 23.5 4.5 39 12-50 231-269 (304)
172 KOG1840|consensus 26.7 86 0.0019 25.8 3.5 27 19-45 285-311 (508)
173 PF07163 Pex26: Pex26 protein; 26.3 1E+02 0.0022 24.2 3.6 49 17-66 35-98 (309)
174 PF10366 Vps39_1: Vacuolar sor 25.9 1.9E+02 0.0041 18.6 5.0 46 21-66 43-94 (108)
175 PF09731 Mitofilin: Mitochondr 25.8 1.1E+02 0.0023 24.7 3.8 30 13-42 519-548 (582)
176 PF11415 Toxin_37: Antifungal 25.8 62 0.0013 17.7 1.7 12 31-42 1-12 (35)
177 KOG0550|consensus 25.7 42 0.00091 27.8 1.5 45 21-65 173-217 (486)
178 PF04910 Tcf25: Transcriptiona 25.2 1.4E+02 0.003 23.1 4.2 29 16-44 39-67 (360)
179 PF10666 Phage_Gp14: Phage pro 25.0 62 0.0013 22.6 2.0 17 30-46 89-105 (140)
180 PF13606 Ank_3: Ankyrin repeat 24.3 46 0.00099 16.5 1.0 9 54-62 4-12 (30)
181 PF04184 ST7: ST7 protein; In 24.0 2.3E+02 0.005 23.9 5.4 48 20-67 262-311 (539)
182 PLN02789 farnesyltranstransfer 23.6 1.4E+02 0.0031 22.6 4.0 36 18-53 72-108 (320)
183 PF02259 FAT: FAT domain; Int 23.5 1.5E+02 0.0033 21.1 4.0 30 16-45 183-212 (352)
184 PF07962 Swi3: Replication For 22.9 1.2E+02 0.0027 18.8 3.0 31 13-43 35-65 (83)
185 TIGR02561 HrpB1_HrpK type III 22.4 2.7E+02 0.0059 19.7 4.9 52 15-66 42-93 (153)
186 COG4235 Cytochrome c biogenesi 22.2 2.2E+02 0.0048 22.0 4.7 42 15-56 225-266 (287)
187 PF09384 UTP15_C: UTP15 C term 21.7 47 0.001 22.5 0.9 37 2-38 29-69 (148)
188 KOG1936|consensus 21.0 79 0.0017 26.4 2.2 21 25-45 172-204 (518)
189 PF10602 RPN7: 26S proteasome 20.7 2.6E+02 0.0056 19.3 4.5 30 18-47 37-66 (177)
190 PF06957 COPI_C: Coatomer (COP 20.7 1.7E+02 0.0036 23.8 3.9 30 20-49 207-236 (422)
191 PF08673 RsbU_N: Phosphoserine 20.6 1.3E+02 0.0029 18.6 2.7 33 35-67 22-54 (77)
192 KOG4234|consensus 20.2 1.7E+02 0.0036 22.5 3.6 34 18-51 169-202 (271)
No 1
>KOG1173|consensus
Probab=99.87 E-value=2e-22 Score=162.74 Aligned_cols=67 Identities=51% Similarity=1.001 Sum_probs=65.9
Q ss_pred CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcchhhhhhhcc
Q psy3703 11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNSKLKKKKKK 77 (79)
Q Consensus 11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n~LFl~AHk~ 77 (79)
.++.+|+||+.++||++|++|+|++|++||+.+|+.||||.+|+|+|||||+|+|++|+||+++|+-
T Consensus 238 ~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~L 304 (611)
T KOG1173|consen 238 IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKL 304 (611)
T ss_pred hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999983
No 2
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.87 E-value=0.0029 Score=36.16 Aligned_cols=51 Identities=10% Similarity=0.149 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
+|+++....|..++.+++|+++....++.++.||.+..++-.-=-|..+++
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG 51 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999999999998775544444455554
No 3
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.65 E-value=0.0051 Score=40.05 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcc
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN 68 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n 68 (79)
.+++...|+.+...++++++..++++++..||++....-..+-|+..+|...
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~ 113 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRA 113 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHH
Confidence 4677888999999999999999999999999999999999999999998754
No 4
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.61 E-value=0.00087 Score=40.29 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703 16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS 67 (79)
Q Consensus 16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~ 67 (79)
+.++....|..+|.+++|++|+++.++ ++.+|-+..+.-+.--|+++|+.-
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCH
Confidence 567788899999999999999999999 989998878877887889999864
No 5
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.46 E-value=0.0056 Score=34.76 Aligned_cols=43 Identities=26% Similarity=0.265 Sum_probs=23.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 23 NAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 23 ~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
+|..++.+++|++|.++-+++++.+|.+...+=..=-|++++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g 45 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG 45 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence 4555555555555555555555555555555544444444444
No 6
>KOG1155|consensus
Probab=96.43 E-value=0.01 Score=48.77 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=64.0
Q ss_pred CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcchhhhhhhcc
Q psy3703 11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNSKLKKKKKK 77 (79)
Q Consensus 11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n~LFl~AHk~ 77 (79)
.|+.++.=+....|-..|.+-||++|..+=+.|++.|||-.+=|-+|=-.||-...+.+|=++||.-
T Consensus 256 ~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 256 VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999999999999999963
No 7
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.43 E-value=0.0084 Score=30.34 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYH 50 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn 50 (79)
++...++..++.+++|++|.+-.++.|+.||-|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 567889999999999999999999999999953
No 8
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.40 E-value=0.0064 Score=34.53 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT 51 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~ 51 (79)
.+|+++....+..++.+++++++.+.-+++++.+|.|+
T Consensus 28 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 28 PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 67999999999999999999999999999999999873
No 9
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.35 E-value=0.0056 Score=34.77 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=32.3
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYH 50 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn 50 (79)
.+|.++....|+.++.+++|++|.++.++++..+|-+
T Consensus 22 p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 22 PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 5689999999999999999999999999999998875
No 10
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.34 E-value=0.016 Score=28.90 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYH 50 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn 50 (79)
.+....+..++.+++|++|.+..++.++.+|-|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 567788999999999999999999999999954
No 11
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.23 E-value=0.0096 Score=32.33 Aligned_cols=37 Identities=14% Similarity=0.010 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC 53 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~ 53 (79)
+++....|+.+..+|+++++.++-+++++.+|-|...
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a 37 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEA 37 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 5788899999999999999999999999999988654
No 12
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.85 E-value=0.016 Score=33.01 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=33.1
Q ss_pred CCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCC
Q psy3703 14 PDNLDMMVANAERLYYGC-AYKKCFTITEQVLSRDP 48 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~-~f~~c~~it~~iL~~Dp 48 (79)
.+|+++...+|..++.++ ++.+|++-.+++++.||
T Consensus 34 p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 34 PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 568899999999999999 79999999999999998
No 13
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.43 E-value=0.02 Score=32.39 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=36.4
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703 27 LYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 27 ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~ 66 (79)
++.+++|+++.++.+++++.+|-+.++.-...-|+++.|.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 40 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ 40 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999999999999999999885
No 14
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.95 E-value=0.06 Score=30.80 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=30.7
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA 52 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~ 52 (79)
.+++.....+|..++.+++|+++.+..+++++.+|-+..
T Consensus 26 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 26 PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 457777788888888888888888888888888886544
No 15
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.92 E-value=0.085 Score=30.82 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHH
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIA 59 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hia 59 (79)
|.+--.|--+|-.++|.+|.+.+..+|+.+|-|..+.-++-+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 556677888999999999999999999999999988776543
No 16
>KOG1174|consensus
Probab=94.91 E-value=0.036 Score=45.43 Aligned_cols=48 Identities=25% Similarity=0.336 Sum_probs=45.4
Q ss_pred CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHH
Q psy3703 11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHI 58 (79)
Q Consensus 11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hi 58 (79)
-.|.+|.|++.+.|+-+|+.|++.++..+-++++..|||+...+-+|-
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya 273 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYA 273 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHH
Confidence 568999999999999999999999999999999999999999998874
No 17
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.58 E-value=0.13 Score=32.30 Aligned_cols=40 Identities=13% Similarity=-0.016 Sum_probs=23.0
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L 54 (79)
+|+++....|..++.+++|.+|..+.+++++.+|-+....
T Consensus 49 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 88 (135)
T TIGR02552 49 YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPY 88 (135)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 4555556666666666666666666666666555544433
No 18
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.36 E-value=0.17 Score=22.58 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPY 49 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpy 49 (79)
++....|..++..++|+++...-++.++.+|-
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 56678899999999999999999999998874
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.27 E-value=0.055 Score=38.60 Aligned_cols=58 Identities=19% Similarity=0.115 Sum_probs=48.2
Q ss_pred CCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcch
Q psy3703 12 VLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNS 69 (79)
Q Consensus 12 ~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n~ 69 (79)
...+|+.+....|+.+...|+.+++.+.-+++|+.+|-+..++--++-.+++.|...+
T Consensus 141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~ 198 (280)
T PF13429_consen 141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDE 198 (280)
T ss_dssp ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHH
Confidence 3568999999999999999999999999999999999999999988888988886554
No 20
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.26 E-value=0.18 Score=28.78 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=38.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703 24 AERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 24 Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~ 66 (79)
++.++.+.+|+++.+..+++++.+|-+....-..=.|++.+|.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~ 44 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR 44 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc
Confidence 4678999999999999999999999988888888888888875
No 21
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.18 E-value=0.32 Score=30.47 Aligned_cols=49 Identities=12% Similarity=-0.040 Sum_probs=42.9
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q psy3703 13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACL 61 (79)
Q Consensus 13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL 61 (79)
-.+++++....|..++..++++++....+++++.||-+..+.++.-.|.
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 129 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAE 129 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 3568999999999999999999999999999999999988776665443
No 22
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.15 E-value=0.18 Score=33.47 Aligned_cols=55 Identities=7% Similarity=0.065 Sum_probs=41.0
Q ss_pred CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
-.++-+++....++..++.+++|+++.+...+.+..||.+....-.--.++..+|
T Consensus 18 ~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g 72 (144)
T PRK15359 18 QLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK 72 (144)
T ss_pred HHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 3456677777788888888888888888888888888887777655555555544
No 23
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.13 E-value=0.14 Score=25.02 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPY 49 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpy 49 (79)
|.+...|..++..++++++.++-+++++.-|-
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 57788999999999999999999999999884
No 24
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=93.77 E-value=0.25 Score=26.49 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
++.++....|..++.+++++++.+..+++++..|-+..+.-....++...+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 32 DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 344667777777777788888888777777777766644333333444443
No 25
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=92.81 E-value=0.55 Score=31.11 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=45.0
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcc
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN 68 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n 68 (79)
.++.++....|..+...++++++.+.-+++++.||-+...+--.--|+.++|...
T Consensus 55 P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 55 PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 4578888899999999999999999999999999987777666666777777543
No 26
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=92.61 E-value=0.8 Score=24.41 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703 19 MMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54 (79)
Q Consensus 19 vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L 54 (79)
+....|..++.+++|+++..+.+++++.+|-+..+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 37 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAY 37 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHH
Confidence 567788999999999999999999999988775433
No 27
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=92.56 E-value=0.5 Score=33.17 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=40.7
Q ss_pred CCChHHHHHHHHHH-HHhCC--HHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703 14 PDNLDMMVANAERL-YYGCA--YKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~l-y~~~~--f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~ 66 (79)
.+|+++....|..+ +..++ +.++.++.++.++.||-+...+-.-=...+++|.
T Consensus 104 P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~ 159 (198)
T PRK10370 104 GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD 159 (198)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Confidence 57888888888875 45566 4888888888888888888877666666666664
No 28
>KOG0624|consensus
Probab=92.53 E-value=0.25 Score=40.08 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=43.6
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHH
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIA 59 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hia 59 (79)
.||++.....++.+|+-++-+..+.....-|+.||-|-.|.|.|=.
T Consensus 220 ~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 220 QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK 265 (504)
T ss_pred ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 5899999999999999999999999999999999999999999843
No 29
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.23 E-value=0.54 Score=35.79 Aligned_cols=53 Identities=9% Similarity=0.157 Sum_probs=33.7
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~ 66 (79)
.+|.++...+|..+...++|++|+...+++++.+|-+....-..-.+++.+|.
T Consensus 33 P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 33 PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 35666777777777777777777777777777777665554444444455543
No 30
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=92.06 E-value=0.34 Score=33.32 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=44.6
Q ss_pred CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
-.+.+..|-++.+|+..+.+++|+-+.+|+..++.-||-|...--+-..+|-.|+
T Consensus 64 v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 64 VELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999999887777666666665
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=92.06 E-value=0.82 Score=29.46 Aligned_cols=35 Identities=14% Similarity=0.026 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT 51 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~ 51 (79)
.++....|..++.+++|+++.+..++.++.+|-+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 65 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY 65 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 33444444444444444444444444444444443
No 32
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=91.87 E-value=0.36 Score=36.12 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=47.5
Q ss_pred CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703 11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS 67 (79)
Q Consensus 11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~ 67 (79)
...+.++.++...|-..-.+++|+++-++.++.|+.||.+.++|---|.|-..+|+.
T Consensus 195 ~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 195 DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 345678999999999999999999999999999999999999999888888888876
No 33
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=91.86 E-value=0.46 Score=36.19 Aligned_cols=47 Identities=9% Similarity=0.183 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703 20 MVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 20 l~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~ 66 (79)
+..+|..+|.+++|++|.+..++.|+.||-+...+-..-.|+..+|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~ 51 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN 51 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 67889999999999999999999999999988877666667776665
No 34
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.81 E-value=0.52 Score=29.76 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=41.5
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch--HHHHHHHHhhCCcchh
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL--PLHIACLVEMNKSNSK 70 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L--P~hiacL~EL~~~n~L 70 (79)
.+|+|.....|+.+...++++++++..-.|++.|+-..+-- -..|+++--||..+.|
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~pl 77 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPL 77 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChH
Confidence 57889999999999999999999999999999999653322 4566666666665544
No 35
>KOG2076|consensus
Probab=91.57 E-value=0.36 Score=42.00 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=45.3
Q ss_pred CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703 11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~ 66 (79)
-.|.-..+=+++.|-.+|.+|++++|.+|+.+|+++||-|....- .||--+|..+
T Consensus 133 ~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~-tL~~IyEqrG 187 (895)
T KOG2076|consen 133 SKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYY-TLGEIYEQRG 187 (895)
T ss_pred cccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHH-HHHHHHHHcc
Confidence 345555778999999999999999999999999999999877653 4677777763
No 36
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=91.26 E-value=1.1 Score=26.78 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---CchHHHHHHHHhhCC
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT---ACLPLHIACLVEMNK 66 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~---~~LP~hiacL~EL~~ 66 (79)
.+.....|..++..++|+++....++++..+|-+. ..+-..-.++.+++.
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 91 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD 91 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC
Confidence 46778888889999999999999999988887653 344444456666554
No 37
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=91.25 E-value=1.2 Score=26.57 Aligned_cols=50 Identities=12% Similarity=0.019 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---CchHHHHHHHHhhCC
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT---ACLPLHIACLVEMNK 66 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~---~~LP~hiacL~EL~~ 66 (79)
+|++...|..++.+++|+++.+..+++++.+|-+. .+.-..--++++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 54 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK 54 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc
Confidence 57888889999999999999999999988887654 333333444444443
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=91.11 E-value=1.1 Score=28.92 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHH
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLH 57 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~h 57 (79)
++++.....|..++.+++++++.+..++.++.+|.+...+.+.
T Consensus 167 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 209 (234)
T TIGR02521 167 QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLG 209 (234)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3455566666666666666666666666666655544444433
No 39
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=91.04 E-value=0.9 Score=35.27 Aligned_cols=55 Identities=9% Similarity=0.034 Sum_probs=47.2
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703 13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS 67 (79)
Q Consensus 13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~ 67 (79)
-.+|++++...|..++..++|+++.++-+++++.+|-+..+.-...-++...|..
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRK 887 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Confidence 3578888889999999999999999999999999999887777777777777653
No 40
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=90.76 E-value=0.74 Score=38.70 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=48.7
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS 67 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~ 67 (79)
.++.......|..|+.+.+|++++..+++.|..+|.+...+-..=.||.++|..
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch
Confidence 467788888999999999999999999999999999999999999999999864
No 41
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.73 E-value=0.52 Score=24.46 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHH--HHhcCCCC
Q psy3703 20 MVANAERLYYGCAYKKCFTITEQ--VLSRDPYH 50 (79)
Q Consensus 20 l~~~Ae~ly~~~~f~~c~~it~~--iL~~Dpyn 50 (79)
+...|+.+..+++|+++.++-++ .+..||.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 45678999999999999999999 55666654
No 42
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=90.51 E-value=0.81 Score=36.56 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=30.8
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC 53 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~ 53 (79)
.+++|+...++..++..++|+++....+++++.+|-+...
T Consensus 396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 4567888888888888888888888888888888866544
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=89.58 E-value=1.7 Score=34.75 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=38.0
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
.+++++....|..++.+++++++.+..++.++.||.+....-.....++.++
T Consensus 369 P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 369 PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 4567788888888888899999999999999998887665333333444444
No 44
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.46 E-value=1.3 Score=22.20 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLS 45 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~ 45 (79)
+.+...|..++.+++|+++..+.+++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5677889999999999999888887775
No 45
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.05 E-value=0.73 Score=38.15 Aligned_cols=45 Identities=29% Similarity=0.481 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 20 MVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 20 l~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
.++.||.+|.+|+|++|+--++-+.+.+| .+.++-+-==||+|-+
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k 509 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK 509 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999 5555555555666644
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=88.63 E-value=0.61 Score=33.23 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=41.5
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS 67 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~ 67 (79)
.+|+++....|..++..+++++|+.+-++.++.+|-++.++-.+--+|...|..
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccc
Confidence 567888888999999999999999999999999999999888888888777754
No 47
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=87.87 E-value=2 Score=33.36 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L 54 (79)
++++.....|..++.+++|+++.++.+++++.+|-+....
T Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 196 (899)
T TIGR02917 157 RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDAL 196 (899)
T ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 4455666666666666666666666666666666554433
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=87.66 E-value=2.6 Score=30.91 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=23.6
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT 51 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~ 51 (79)
++.+....++..++.+++++++.+..++.++.+|-+.
T Consensus 130 ~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 130 TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 4455666666666666666666666666666666553
No 49
>KOG1126|consensus
Probab=87.64 E-value=1.3 Score=37.39 Aligned_cols=59 Identities=10% Similarity=0.076 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcchhhhhhhc
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNSKLKKKKK 76 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n~LFl~AHk 76 (79)
=|+...+..+|...+|.+|-+|=+.+=+.+||...-+=+|=..|.+|+..-+|=++|+-
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 46777888999999999999999999999999999999999999999999999888863
No 50
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=87.26 E-value=2.1 Score=35.16 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
+++++....|..++.+++++++....+++++.+|-+..+....-.++.++|
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG 332 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 455666677777777777777777777777777776665555444444444
No 51
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=86.29 E-value=0.94 Score=31.91 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=40.2
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLV 62 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~ 62 (79)
.+..|.+-+.|-.+|.+++++++-++.+-+...||++..-.---=+|.-
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q 80 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ 80 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4667889999999999999999999999999999998765544333433
No 52
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.17 E-value=2.3 Score=20.81 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLSRDP 48 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dp 48 (79)
.+....+..+...++++++.+--++.++.+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567889999999999999999999999988
No 53
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=86.07 E-value=2.7 Score=34.20 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=43.3
Q ss_pred CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc--hHHHHHHHHh
Q psy3703 11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC--LPLHIACLVE 63 (79)
Q Consensus 11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~--LP~hiacL~E 63 (79)
..=.++++.....+-.||..++|+++.+..++.|+.+|.+... .=..+||.+-
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya 123 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA 123 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH
Confidence 4456778889999999999999999999999999999998754 3355565553
No 54
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=85.80 E-value=1.8 Score=24.89 Aligned_cols=48 Identities=13% Similarity=0.013 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
.++...|..++.+++|++|.+..++.++.-.-..+--|..+.++..++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 53 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLG 53 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 567789999999999999999999988652112223344455555444
No 55
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=85.66 E-value=2.1 Score=30.02 Aligned_cols=41 Identities=10% Similarity=0.181 Sum_probs=36.3
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc
Q psy3703 13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC 53 (79)
Q Consensus 13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~ 53 (79)
-.+|++++...|-.+|.+++|++|...-+++|+.+|-..+-
T Consensus 140 dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 140 DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 35688999999999999999999999999999999975543
No 56
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=84.72 E-value=3.7 Score=32.85 Aligned_cols=51 Identities=10% Similarity=-0.009 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
+|.......|..++.+++|++|....++.++.+|-+..++-.+--++..+|
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 455556666666666666666666666666666666555544444444444
No 57
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.74 E-value=4.7 Score=21.56 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHH--HHHhcCCCC
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITE--QVLSRDPYH 50 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~--~iL~~Dpyn 50 (79)
+|-+-+.|-.+|.+++|+++.++=+ -.-..||+|
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3567788999999999999999954 555666654
No 58
>KOG0551|consensus
Probab=83.61 E-value=2 Score=34.39 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=45.4
Q ss_pred CChHHH----HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703 15 DNLDMM----VANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 15 ~N~Dvl----~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~ 66 (79)
+|+||. ..||-..|.-++|+.|+.=|++.|..||-|..++==---|++||..
T Consensus 113 ~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 113 ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 455554 5689999999999999999999999999999998777789999975
No 59
>PRK11189 lipoprotein NlpI; Provisional
Probab=82.63 E-value=3.7 Score=30.09 Aligned_cols=53 Identities=17% Similarity=0.085 Sum_probs=44.5
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~ 66 (79)
.+++++...++..+...++|+++.+.-.+.++.||-+...+-.--.+++..|.
T Consensus 95 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 95 PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR 147 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 57889999999999999999999999999999999988776554455555543
No 60
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=82.41 E-value=3.9 Score=35.55 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhh
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEM 64 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL 64 (79)
+++++....|+.+..+++++++.+.-+++++.+|-|...+--..-++..+
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 45667777777777777777777777777777777766543333333333
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=82.02 E-value=5.1 Score=32.02 Aligned_cols=53 Identities=9% Similarity=-0.160 Sum_probs=43.2
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~ 66 (79)
.+|++.....|..+..+++++++.+..++.++.+|-+....-..-.++..+|.
T Consensus 335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~ 387 (553)
T PRK12370 335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ 387 (553)
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 56888888999999999999999999999999999998876444444544443
No 62
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=81.47 E-value=5.5 Score=26.56 Aligned_cols=49 Identities=10% Similarity=-0.014 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
.++....|..++..++|+++.+..++.++.+|-+...+...-.++..++
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 120 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG 120 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 4678888888888888888888888888888877655544434444444
No 63
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=80.88 E-value=7.1 Score=26.70 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=24.5
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT 51 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~ 51 (79)
...+|.....+..++.+++|+++...-+++++.+|-+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~ 67 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP 67 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 44566666666666666666666666666666666553
No 64
>KOG3081|consensus
Probab=80.64 E-value=5.3 Score=31.08 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=51.4
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703 13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS 67 (79)
Q Consensus 13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~ 67 (79)
-.-+++++...|-.+-.++||+++-.+-+..|.+|+-.+++|---|-|-..+|+.
T Consensus 203 ~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 203 TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999999999999999999999999999999976
No 65
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=80.59 E-value=6.2 Score=30.13 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcc
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN 68 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n 68 (79)
..+....|+.+..+++++++.+..+++++..|-|..++=+......+.|.-.
T Consensus 153 l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 153 ILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 3677778999999999999999999999999999998888887777777644
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=80.26 E-value=8.6 Score=27.70 Aligned_cols=47 Identities=13% Similarity=0.035 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 19 MMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 19 vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
.+...|..+..+++++++.+..++.++.+|-+.......-.+++|.|
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 34445556666666666666666666666666444444333445544
No 67
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=79.51 E-value=8.3 Score=25.45 Aligned_cols=45 Identities=13% Similarity=0.016 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLV 62 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~ 62 (79)
.+....|..+...++++++.+..++.++.+|-+...+..--.+..
T Consensus 73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 477888999999999999999999999999988776543333444
No 68
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=79.50 E-value=7.1 Score=30.05 Aligned_cols=54 Identities=28% Similarity=0.375 Sum_probs=43.2
Q ss_pred CCCCChHHHHHHHHHHHHhCCH---HHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 12 VLPDNLDMMVANAERLYYGCAY---KKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 12 ~L~~N~Dvl~~~Ae~ly~~~~f---~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
-.++|+|++..-||.+|++.+= .+.=++-.++|+.||.|...+-+.=.-.+|-+
T Consensus 185 L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g 241 (287)
T COG4235 185 LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQG 241 (287)
T ss_pred hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence 3589999999999999998764 67778889999999999888766555555443
No 69
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=79.00 E-value=5.9 Score=32.52 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHHHHHhCCHHH----HHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703 14 PDNLDMMVANAERLYYGCAYKK----CFTITEQVLSRDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~----c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~ 66 (79)
.+++++....|..++.++++++ +.+..+++++.+|-+..++-..-..+.+.|.
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence 4577888888999999999985 7889999999999887777777677766654
No 70
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.69 E-value=0.75 Score=35.99 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHH---HHHHHh
Q psy3703 21 VANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLH---IACLVE 63 (79)
Q Consensus 21 ~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~h---iacL~E 63 (79)
++..|.++.-.++++|++-|+.+++.|+||++|.--- +.-+++
T Consensus 154 l~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~ 199 (328)
T COG5536 154 LRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFN 199 (328)
T ss_pred eecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHh
Confidence 3447888999999999999999999999999998765 666665
No 71
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=78.47 E-value=8.6 Score=32.04 Aligned_cols=39 Identities=13% Similarity=0.041 Sum_probs=21.4
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA 52 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~ 52 (79)
.+|++++...|..+-.++++++|.+..+++++.+|-+..
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 445555555555555555555555555555555555444
No 72
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=78.34 E-value=5.9 Score=27.47 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc-hHHHHHHHHhhC
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC-LPLHIACLVEMN 65 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~-LP~hiacL~EL~ 65 (79)
-+.+..|..+|.+++|.++.+.-++.++..|-|+.+ .-.|.--|....
T Consensus 48 qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 48 QAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 356778889999999999999999999999988874 233444444433
No 73
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=78.02 E-value=3.2 Score=33.78 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=28.5
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh-cCCC
Q psy3703 16 NLDMMVANAERLYYGCAYKKCFTITEQVLS-RDPY 49 (79)
Q Consensus 16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~-~Dpy 49 (79)
.++--+.+|+.+|.+++|.+++++...+|+ .+|-
T Consensus 518 ~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~vePG 552 (569)
T PRK04778 518 EVAEALNEAERLFREYDYKAALEIIATALEKVEPG 552 (569)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhCCc
Confidence 455568899999999999999999988886 5664
No 74
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=77.80 E-value=8.1 Score=30.60 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=48.3
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC-cchhh
Q psy3703 13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK-SNSKL 71 (79)
Q Consensus 13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~-~n~LF 71 (79)
-..+.+++.-.|+-+..+++++.|+++.++..+..|..+.+--.-.-|-+.++. .+.|.
T Consensus 230 ~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 230 NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 345689999999999999999999999999999999999887766666666665 55553
No 75
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=77.68 E-value=3.9 Score=33.33 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHHHHh-CCHHHHHHHHHHHHh-cCCC
Q psy3703 16 NLDMMVANAERLYYG-CAYKKCFTITEQVLS-RDPY 49 (79)
Q Consensus 16 N~Dvl~~~Ae~ly~~-~~f~~c~~it~~iL~-~Dpy 49 (79)
.+|-.+.+|+.+|.+ ++|.+++++...+|+ .+|-
T Consensus 514 ~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~vePG 549 (560)
T PF06160_consen 514 EVDEALTEAEDLFRNEYDYEKALETIATALEKVEPG 549 (560)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCC
Confidence 455567899999999 999999999999996 5664
No 76
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.67 E-value=4.8 Score=30.69 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACL 61 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL 61 (79)
.+++...||.+...++|+.|.+.-++++..|||+.+..---+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y 197 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAY 197 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 467888999999999999999999999999999986654444333
No 77
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=77.65 E-value=2.7 Score=24.79 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=27.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCCchHHH--HHHHHhhCC
Q psy3703 29 YGCAYKKCFTITEQVLSRDPYHTACLPLH--IACLVEMNK 66 (79)
Q Consensus 29 ~~~~f~~c~~it~~iL~~Dpyn~~~LP~h--iacL~EL~~ 66 (79)
.+++|+++..+.+++++.+|.+....-++ --|++.+|.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~ 40 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK 40 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC
Confidence 47899999999999999999743332333 668888775
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=77.21 E-value=5.9 Score=32.35 Aligned_cols=51 Identities=18% Similarity=0.136 Sum_probs=45.6
Q ss_pred CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q psy3703 11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACL 61 (79)
Q Consensus 11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL 61 (79)
...-|...++-.+|+.+...|+++++-.+-..+|++.|-|..-+-....|+
T Consensus 32 ~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 32 KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 345577889999999999999999999999999999999998888888877
No 79
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=75.78 E-value=5.4 Score=20.57 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHH
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCF 37 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~ 37 (79)
.+|++.....|..++.+|+++++.
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 579999999999999999999874
No 80
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=75.74 E-value=14 Score=28.22 Aligned_cols=40 Identities=20% Similarity=0.040 Sum_probs=36.9
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC 53 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~ 53 (79)
.+++++....|+.+..+++++++.++.++.|+++|-+...
T Consensus 260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 3699999999999999999999999999999999988753
No 81
>KOG2002|consensus
Probab=75.02 E-value=9.8 Score=33.92 Aligned_cols=51 Identities=10% Similarity=-0.029 Sum_probs=42.4
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHh
Q psy3703 13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVE 63 (79)
Q Consensus 13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~E 63 (79)
=.++.+|+...|+.+|..+++++|.+.....+..-|.+..++=-.-..+.+
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKK 762 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHH
Confidence 467999999999999999999999999999999999988755444444433
No 82
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=75.01 E-value=9.4 Score=27.80 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy3703 16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYH 50 (79)
Q Consensus 16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn 50 (79)
+.+.....|+.+..+++++++.++-+++++.+|-+
T Consensus 213 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 213 CVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 44455566666667777777777777777666643
No 83
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=74.80 E-value=9.6 Score=33.19 Aligned_cols=40 Identities=10% Similarity=-0.064 Sum_probs=29.4
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC 53 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~ 53 (79)
.+|+|.+...|+.+..+++++++.+..+++++.+|.+...
T Consensus 634 P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~ 673 (1157)
T PRK11447 634 PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNT 673 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHH
Confidence 4577777777777777777777777777777777765544
No 84
>KOG2758|consensus
Probab=73.98 E-value=4.2 Score=32.75 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhCCHH---HHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcchhhh
Q psy3703 18 DMMVANAERLYYGCAYK---KCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNSKLK 72 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~---~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n~LFl 72 (79)
|=++..-+.+|...||+ .|+.-|++||..|+|- +||+=|.-..-+||.
T Consensus 289 DPiteFl~clyvn~DFdgAq~kl~eCeeVl~nDfFL-------va~l~~F~E~ARl~i 339 (432)
T KOG2758|consen 289 DPITEFLECLYVNYDFDGAQKKLRECEEVLVNDFFL-------VALLDEFLENARLLI 339 (432)
T ss_pred CcHHHHHHHHhhccchHHHHHHHHHHHHHHhcchhH-------HHHHHHHHHHHHHHH
Confidence 44677889999999995 5799999999999985 777777665555553
No 85
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=73.21 E-value=8.8 Score=25.75 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=28.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703 23 NAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54 (79)
Q Consensus 23 ~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L 54 (79)
+|+.+|.+|+.-++++|++..+...+-...+-
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~ 33 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW 33 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH
Confidence 68999999999999999999999888776653
No 86
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=73.18 E-value=8.9 Score=26.61 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA 52 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~ 52 (79)
.+..+..|+.+|.+++|.++....++.++.-|-|..
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 466777778888888888888888888888887765
No 87
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=72.74 E-value=10 Score=29.02 Aligned_cols=43 Identities=9% Similarity=-0.024 Sum_probs=38.5
Q ss_pred CCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703 12 VLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54 (79)
Q Consensus 12 ~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L 54 (79)
.-.+|+++....|..+..+++|.++-+--++.++.+|-+..++
T Consensus 323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~ 365 (398)
T PRK10747 323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA 365 (398)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 3468999999999999999999999999999999999887655
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=72.56 E-value=9.9 Score=25.99 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA 52 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~ 52 (79)
+.....|..++.+++|+++.+..+++++.+|-+..
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 57788999999999999999999999999997766
No 89
>KOG2376|consensus
Probab=72.55 E-value=6.2 Score=33.54 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=31.9
Q ss_pred CCCCCChH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy3703 11 SVLPDNLD-MMVANAERLYYGCAYKKCFTITEQVLSRDP 48 (79)
Q Consensus 11 ~~L~~N~D-vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dp 48 (79)
.++....| ++.-+|..+|..++|++|++|=+.+.+.+-
T Consensus 103 ~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 103 KGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred hcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35566667 888999999999999999999999987543
No 90
>KOG4340|consensus
Probab=71.42 E-value=2.5 Score=34.01 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 20 MVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 20 l~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
.+-.|..+|..|.|.+++.+.+.+...|..+..|+-+.-|.+|.-+
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~ 126 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEG 126 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccc
Confidence 4567999999999999999999999999999999999999887544
No 91
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=71.07 E-value=14 Score=30.81 Aligned_cols=47 Identities=17% Similarity=0.091 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 19 MMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 19 vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
+....|..+..+++++++.++.+++|+.+|-+....-....++.+.+
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 34555555555555555555555555555555444433333444333
No 92
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=70.67 E-value=5.4 Score=33.44 Aligned_cols=31 Identities=29% Similarity=0.516 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHHH-hCCHHHHHHHHHHHHhc
Q psy3703 16 NLDMMVANAERLYY-GCAYKKCFTITEQVLSR 46 (79)
Q Consensus 16 N~Dvl~~~Ae~ly~-~~~f~~c~~it~~iL~~ 46 (79)
+++=.++.|+++|+ ..||++++++.++.|+.
T Consensus 517 ~v~~~l~eAe~lF~~~~dY~~s~eia~qaLE~ 548 (570)
T COG4477 517 EVAKSLNEAERLFENAFDYDASFEIASQALEK 548 (570)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHhh
Confidence 45567889999999 99999999999999974
No 93
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=70.39 E-value=11 Score=24.94 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=45.3
Q ss_pred CCCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CCCCchHHHHHHHHhhCCc
Q psy3703 11 SVLPDN--LDMMVANAERLYYGCAYKKCFTITEQVLSRDP---YHTACLPLHIACLVEMNKS 67 (79)
Q Consensus 11 ~~L~~N--~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dp---yn~~~LP~hiacL~EL~~~ 67 (79)
.+|.+. ...++..|..+-..|+++++..+-++.+...| .+...-+++--+|+.+|..
T Consensus 30 ~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~ 91 (120)
T PF12688_consen 30 AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRP 91 (120)
T ss_pred cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCH
Confidence 345444 56788899999999999999999999998844 4777777777788888864
No 94
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=69.57 E-value=12 Score=27.05 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=15.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703 21 VANAERLYYGCAYKKCFTITEQVLSRDPYHTA 52 (79)
Q Consensus 21 ~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~ 52 (79)
...|..+|.+.+|+++...-++.++.+|-|+.
T Consensus 73 l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 73 LDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 34444445555555555555555555554443
No 95
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=69.54 E-value=14 Score=26.83 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=33.8
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT 51 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~ 51 (79)
..++.....|...+.+++|+++.+.-++++..+|+..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~ 66 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP 66 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence 4677788999999999999999999999999999874
No 96
>KOG4626|consensus
Probab=69.51 E-value=7.6 Score=33.89 Aligned_cols=48 Identities=31% Similarity=0.301 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
|=++..|-++|..+||.++.+-|..+-..||-+.+.+|+-=|.-+..+
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~ 96 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGS 96 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhccc
Confidence 348899999999999999999999999999999999998777666554
No 97
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=69.20 E-value=14 Score=26.95 Aligned_cols=27 Identities=4% Similarity=0.070 Sum_probs=11.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy3703 24 AERLYYGCAYKKCFTITEQVLSRDPYH 50 (79)
Q Consensus 24 Ae~ly~~~~f~~c~~it~~iL~~Dpyn 50 (79)
|..++.+++|+++.++-+++++.+|.+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~ 140 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFA 140 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcch
Confidence 444444444444444444444444433
No 98
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=69.14 E-value=17 Score=31.95 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=19.3
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC 53 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~ 53 (79)
+|+++....+-.+..+++++++.+.-+++++.+|-+...
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPAL 679 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 344444444445555555555555555555555544433
No 99
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=69.00 E-value=13 Score=25.83 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA 52 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~ 52 (79)
...+-+...|...|.+++|.+|.+.-++|...-|+..-
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~ 40 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY 40 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH
Confidence 45678899999999999999999999999999887554
No 100
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=67.57 E-value=11 Score=18.10 Aligned_cols=23 Identities=13% Similarity=-0.049 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHH
Q psy3703 19 MMVANAERLYYGCAYKKCFTITE 41 (79)
Q Consensus 19 vl~~~Ae~ly~~~~f~~c~~it~ 41 (79)
.....|+.++.+||++++..+.+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678999999999999988764
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=66.54 E-value=17 Score=26.12 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchH
Q psy3703 16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLP 55 (79)
Q Consensus 16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP 55 (79)
......-+|-.++.+++++++.++.+++++.+|-+...+-
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4456777888999999999999999999999998874443
No 102
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=65.45 E-value=22 Score=23.57 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT 51 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~ 51 (79)
.+.......|..++..++|+++....+++++.+|-..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 69 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN 69 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc
Confidence 4566778889999999999999999999998876543
No 103
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=63.51 E-value=19 Score=26.72 Aligned_cols=35 Identities=9% Similarity=-0.093 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT 51 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~ 51 (79)
++.....|+.+|.+++|+++...-+++++..|-+.
T Consensus 180 ~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 180 PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 57888899999999999999999999998877653
No 104
>KOG1129|consensus
Probab=62.68 E-value=13 Score=30.19 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhh
Q psy3703 21 VANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEM 64 (79)
Q Consensus 21 ~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL 64 (79)
.-+|-.+|.+-.|+.|-++|..+|+..|+-..+--+-.-||-+.
T Consensus 8 ~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~ 51 (478)
T KOG1129|consen 8 YFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQR 51 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhh
Confidence 34678899999999999999999999999888877777777653
No 105
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=61.45 E-value=43 Score=23.65 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=45.5
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~ 66 (79)
+++.+.+..+-.+-.+++|.+|..+-+.|-+..|..+-+=-+.--||+-++.
T Consensus 42 ~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 42 EFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred CchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 5677888889999999999999999999999998888888888888887764
No 106
>PLN02789 farnesyltranstransferase
Probab=61.21 E-value=18 Score=27.51 Aligned_cols=50 Identities=10% Similarity=0.023 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhh
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEM 64 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL 64 (79)
+|..+-..|+-.+...++|++.++-|.++|+.||.|..+.=----++..+
T Consensus 140 kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 140 KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 45556666666677788999999999999999999987654333334333
No 107
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=61.15 E-value=24 Score=22.81 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDP 48 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dp 48 (79)
....+..|+.+|.+++|+++.++-+.+++..|
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~ 79 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAP 79 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 45677889999999999999999999998764
No 108
>PRK14574 hmsH outer membrane protein; Provisional
Probab=61.10 E-value=32 Score=29.75 Aligned_cols=53 Identities=6% Similarity=-0.072 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~ 66 (79)
.+.+|.....|-..|.+|+++++++...++|+.||-+.+.+--++..+..+|.
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~ 83 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR 83 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC
Confidence 35788999999999999999999999999999999996543355555555553
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=60.95 E-value=24 Score=29.92 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=49.2
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~ 66 (79)
.+++|.+.-.|+..-.+++++++..+-+++++.+|-|....-.+.-+|..++.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~ 135 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG 135 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc
Confidence 46799999999999999999999999999999999999999988888888875
No 110
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=60.20 E-value=28 Score=26.56 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703 22 ANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 22 ~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~ 66 (79)
..|+....+++++++.+..+++++.+|-|...+=+-..+.+..|.
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd 202 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA 202 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999998887776666665554
No 111
>PRK14574 hmsH outer membrane protein; Provisional
Probab=59.91 E-value=28 Score=30.11 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchH
Q psy3703 19 MMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLP 55 (79)
Q Consensus 19 vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP 55 (79)
.+.+.|..+-.+++|+++.++-+++++.||-+.+.+-
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~ 140 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLIS 140 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3444477888889999999999999999999977764
No 112
>PRK15331 chaperone protein SicA; Provisional
Probab=59.08 E-value=36 Score=24.18 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhh
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEM 64 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL 64 (79)
.|-+-+.|-.+|.+|+++++-.+=+-+.-.||+|+.-. +=+|+-+++
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~-~GLaa~~Q~ 83 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYT-MGLAAVCQL 83 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH-HHHHHHHHH
Confidence 46677889999999999999999999999999998854 444444443
No 113
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=58.62 E-value=30 Score=21.13 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=23.4
Q ss_pred CCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Q psy3703 12 VLPDNLDMMVANAERLYYGCAYKKCFTITE 41 (79)
Q Consensus 12 ~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~ 41 (79)
+|.+--|+.+.+=+.+|.+++|+++-+++-
T Consensus 1 ~lpGad~l~~~~F~~l~~~g~y~eAA~~AA 30 (66)
T PF13838_consen 1 NLPGADDLYVQQFNELFSQGQYEEAAKVAA 30 (66)
T ss_dssp T-SS-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456667889999999999999999988765
No 114
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=56.96 E-value=25 Score=31.00 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=24.4
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYH 50 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn 50 (79)
.+|+.+....|+.+..+++++++...+++.++.||-|
T Consensus 75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n 111 (987)
T PRK09782 75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGD 111 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 3456666666676777777777777777777766633
No 115
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=56.61 E-value=36 Score=27.57 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=53.0
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcchhh
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNSKL 71 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n~LF 71 (79)
.++.-|.+++|+.+-.++|+..+.+=..++++..|-|..++-+-.-|.+.+|.=++|.
T Consensus 150 ~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll 207 (400)
T COG3071 150 DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALL 207 (400)
T ss_pred CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHH
Confidence 6788899999999999999999999999999999999999999999988888766654
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=55.77 E-value=53 Score=25.02 Aligned_cols=52 Identities=10% Similarity=0.147 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703 16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS 67 (79)
Q Consensus 16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~ 67 (79)
+.+++.+.+...+.+++|.++...-.+....+|-+....-.-=+++-.+|..
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh
Confidence 3448888999999999999999999999999999999998888888888754
No 117
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=53.39 E-value=14 Score=27.18 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=24.0
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHH
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTIT 40 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it 40 (79)
.=|+||+.+.|-.++.+++++++|-++
T Consensus 175 ~~n~eil~sLas~~~~~~~~e~AYiwa 201 (203)
T PF11207_consen 175 NFNPEILKSLASIYQKLKNYEQAYIWA 201 (203)
T ss_pred CCCHHHHHHHHHHHHHhcchhhhhhhe
Confidence 348999999999999999999998654
No 118
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=52.25 E-value=36 Score=27.57 Aligned_cols=50 Identities=28% Similarity=0.183 Sum_probs=39.8
Q ss_pred CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q psy3703 11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLV 62 (79)
Q Consensus 11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~ 62 (79)
-.+.+++.|..+-|+++-.-++.+++.+|++..|+..--.. |-..|.|+.
T Consensus 257 r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~ 306 (400)
T COG3071 257 RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLR 306 (400)
T ss_pred HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcC
Confidence 35778999999999999999999999999999998543222 555555543
No 119
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=52.18 E-value=42 Score=26.76 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703 20 MVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS 67 (79)
Q Consensus 20 l~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~ 67 (79)
+--.|..+-..+.|.+|+++++++|..||.+...--..++.|.-+|..
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~ 329 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDE 329 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccc
Confidence 334566667788999999999999999999999988889998888863
No 120
>KOG2076|consensus
Probab=51.98 E-value=41 Score=29.81 Aligned_cols=54 Identities=20% Similarity=0.441 Sum_probs=40.5
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHH-HHHHhhCC
Q psy3703 13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHI-ACLVEMNK 66 (79)
Q Consensus 13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hi-acL~EL~~ 66 (79)
-.+..|++...|+.+=..++|.++++.-+.|...++++...+=.-+ .|+.+|+.
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 5667888888888888888888888888888888888775444433 46667664
No 121
>KOG0545|consensus
Probab=51.75 E-value=17 Score=28.44 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L 54 (79)
-++-+++.-+..+...++|-+.++-|+.||..+|-|-..+
T Consensus 228 ~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~ 267 (329)
T KOG0545|consen 228 MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAY 267 (329)
T ss_pred hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4667888899999999999999999999999999887654
No 122
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=51.05 E-value=35 Score=19.00 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy3703 21 VANAERLYYGCAYKKCFTITEQVLSRDP 48 (79)
Q Consensus 21 ~~~Ae~ly~~~~f~~c~~it~~iL~~Dp 48 (79)
+..|..|...||++.+-++-+.|++..+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4678999999999999999999997544
No 123
>KOG2796|consensus
Probab=51.05 E-value=38 Score=26.90 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CCCchHHHHHHHHhhCCc
Q psy3703 20 MVANAERLYYGCAYKKCFTITEQVLSRDPY--HTACLPLHIACLVEMNKS 67 (79)
Q Consensus 20 l~~~Ae~ly~~~~f~~c~~it~~iL~~Dpy--n~~~LP~hiacL~EL~~~ 67 (79)
.-.+|=.+-|-+|..++.+..++++.++|- -.+.+-+-+..|+||--.
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Ys 338 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEYS 338 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhh
Confidence 346777888999999999999999999994 456677889999998643
No 124
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=49.88 E-value=10 Score=18.83 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCCCCCc
Q psy3703 36 CFTITEQVLSRDPYHTAC 53 (79)
Q Consensus 36 c~~it~~iL~~Dpyn~~~ 53 (79)
-++.|+.+++.||-|..+
T Consensus 2 El~~~~~~l~~~pknys~ 19 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSA 19 (31)
T ss_dssp HHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHCcccccH
Confidence 478999999999988543
No 125
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=49.23 E-value=25 Score=28.28 Aligned_cols=44 Identities=23% Similarity=0.404 Sum_probs=39.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCC-CCCCchHHHHHHHHhhCC
Q psy3703 23 NAERLYYGCAYKKCFTITEQVLSRDP-YHTACLPLHIACLVEMNK 66 (79)
Q Consensus 23 ~Ae~ly~~~~f~~c~~it~~iL~~Dp-yn~~~LP~hiacL~EL~~ 66 (79)
..+-.-.+|+|+++.+.-++|+++|| |-+.++|.-..|-.+||.
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 34566789999999999999999999 889999999999999986
No 126
>KOG3060|consensus
Probab=49.14 E-value=70 Score=24.89 Aligned_cols=56 Identities=23% Similarity=0.207 Sum_probs=46.7
Q ss_pred CCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703 12 VLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS 67 (79)
Q Consensus 12 ~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~ 67 (79)
.+.++.-|.--.|-.+=..+.|+++.++-+++|+.||-|+.+--==||.+--.|+.
T Consensus 81 ~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 81 RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc
Confidence 34667777777888888899999999999999999999998877777777766653
No 127
>KOG1156|consensus
Probab=49.01 E-value=28 Score=30.03 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcc
Q psy3703 20 MVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN 68 (79)
Q Consensus 20 l~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n 68 (79)
+.-+|-.+|...+|..-++.+++||+.+|-|.+.|-+-==.|.-||.+.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ 58 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKE 58 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchH
Confidence 5778999999999999999999999999999999876544444444433
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=48.97 E-value=87 Score=26.00 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=44.9
Q ss_pred CCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhh
Q psy3703 12 VLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEM 64 (79)
Q Consensus 12 ~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL 64 (79)
.-.+|+=.+..+.|.+...++..++.+--++.+..||.. ..|++-.|-++-.
T Consensus 335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~ 386 (484)
T COG4783 335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLK 386 (484)
T ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHh
Confidence 456899999999999999999999999999999999998 7788777755443
No 129
>KOG0543|consensus
Probab=48.35 E-value=66 Score=26.02 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=35.8
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACL 61 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL 61 (79)
.+|.=-+..+++.+-..++|+.|...-+++++.+|.| ..+-.-|+.|
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l 334 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKL 334 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHH
Confidence 5677778888888888888888888888888888888 4444444444
No 130
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.92 E-value=63 Score=22.02 Aligned_cols=47 Identities=11% Similarity=0.175 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcchh
Q psy3703 19 MMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNSK 70 (79)
Q Consensus 19 vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n~L 70 (79)
|..-|+-.+-+||+|++++ .+...--.++..|...=|-..+|..+++
T Consensus 42 v~lIr~~sLmNrG~Yq~AL-----l~~~~~~~pdL~p~~AL~a~klGL~~~~ 88 (116)
T PF09477_consen 42 VALIRLSSLMNRGDYQEAL-----LLPQCHCYPDLEPWAALCAWKLGLASAL 88 (116)
T ss_dssp HHHHHHHHHHHTT-HHHHH-----HHHTTS--GGGHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHhhHHHHHHH-----HhcccCCCccHHHHHHHHHHhhccHHHH
Confidence 5566788889999999983 4556777899999999998888875543
No 131
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=47.61 E-value=38 Score=19.94 Aligned_cols=28 Identities=11% Similarity=0.300 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy3703 21 VANAERLYYGCAYKKCFTITEQVLSRDP 48 (79)
Q Consensus 21 ~~~Ae~ly~~~~f~~c~~it~~iL~~Dp 48 (79)
+..+-.+|.+++|=+|.++-+.+-...|
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~ 30 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAP 30 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCC
Confidence 4567899999999999999999987554
No 132
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=46.64 E-value=76 Score=21.94 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=34.0
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA 52 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~ 52 (79)
..+..+...|+..+..++|+++-+.-+.|..+-||..-
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y 45 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY 45 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc
Confidence 35678899999999999999999999999999999653
No 133
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.90 E-value=68 Score=25.07 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703 16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS 67 (79)
Q Consensus 16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~ 67 (79)
-.+.....|..+..+++|.++..+-..++..+|-+.++.-.+.=|+++.|..
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~ 184 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDV 184 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCCh
Confidence 4566778888999999999999999999999999999999999999999864
No 134
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=44.19 E-value=59 Score=24.64 Aligned_cols=39 Identities=10% Similarity=0.229 Sum_probs=35.6
Q ss_pred CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy3703 11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPY 49 (79)
Q Consensus 11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpy 49 (79)
--..+++-+++++|...|.-.+|..|....+.+.+-.|-
T Consensus 118 G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 118 GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 346789999999999999999999999999999998884
No 135
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=43.77 E-value=11 Score=22.99 Aligned_cols=15 Identities=33% Similarity=0.711 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCCCCC
Q psy3703 37 FTITEQVLSRDPYHT 51 (79)
Q Consensus 37 ~~it~~iL~~Dpyn~ 51 (79)
-+-++++|.+||||.
T Consensus 36 nea~qrLL~qD~Fhe 50 (60)
T PF06972_consen 36 NEAVQRLLSQDPFHE 50 (60)
T ss_pred HHHHHHHHhcCcHHH
Confidence 457899999999973
No 136
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.07 E-value=52 Score=25.08 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT 51 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~ 51 (79)
++.+..|=.++.++++.++-+--++.|+.||-..
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~ 69 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY 69 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 5667788889999999999999999999999654
No 137
>KOG0550|consensus
Probab=40.63 E-value=41 Score=27.81 Aligned_cols=36 Identities=14% Similarity=0.261 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703 19 MMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54 (79)
Q Consensus 19 vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L 54 (79)
+..-++...|.+|+|+.++++=+..|..||-|-...
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 344578889999999999999999999999976654
No 138
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.55 E-value=53 Score=26.17 Aligned_cols=30 Identities=20% Similarity=0.068 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy3703 19 MMVANAERLYYGCAYKKCFTITEQVLSRDP 48 (79)
Q Consensus 19 vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dp 48 (79)
....+|..+|.+++|..|.++.+.++...+
T Consensus 132 ~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l 161 (380)
T TIGR02710 132 TEQGYARRAINAFDYLFAHARLETLLRRLL 161 (380)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhccc
Confidence 344567799999999999999999998754
No 139
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=39.91 E-value=1.1e+02 Score=20.21 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=34.9
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy3703 10 LSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPY 49 (79)
Q Consensus 10 ~~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpy 49 (79)
...|-=...+|.|.+..+.++++|..++++...+.+.=|-
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I 84 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPI 84 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCC
Confidence 3566667899999999999999999999999999887663
No 140
>KOG4648|consensus
Probab=39.00 E-value=34 Score=28.17 Aligned_cols=37 Identities=8% Similarity=0.144 Sum_probs=29.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q psy3703 24 AERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACL 61 (79)
Q Consensus 24 Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL 61 (79)
-..+|-|++|+++.+--++-+..||||. ++|+--|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~Np-V~~~NRA~A 140 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNP-VYHINRALA 140 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCc-cchhhHHHH
Confidence 3469999999999999999999999985 556555443
No 141
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.97 E-value=59 Score=25.25 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYH 50 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn 50 (79)
|.-..+|..+|.+++|..|.++-+.+...-|-.
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~ 164 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGR 164 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Confidence 345688999999999999999999999863433
No 142
>KOG3785|consensus
Probab=38.94 E-value=29 Score=28.67 Aligned_cols=53 Identities=25% Similarity=0.419 Sum_probs=42.9
Q ss_pred CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHH-HHHhh
Q psy3703 11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIA-CLVEM 64 (79)
Q Consensus 11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hia-cL~EL 64 (79)
.+|+|...=++|.|.-.|-+.-||++.+|-++||...|- ...|-||+| |-+-|
T Consensus 145 ~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e-y~alNVy~ALCyyKl 198 (557)
T KOG3785|consen 145 SSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE-YIALNVYMALCYYKL 198 (557)
T ss_pred HHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh-hhhhHHHHHHHHHhc
Confidence 678888888999999999999999999999999988773 345666666 44433
No 143
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=38.77 E-value=1.1e+02 Score=19.96 Aligned_cols=49 Identities=4% Similarity=-0.072 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC--chHHHHHHHHhh
Q psy3703 16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA--CLPLHIACLVEM 64 (79)
Q Consensus 16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~--~LP~hiacL~EL 64 (79)
..+.....+..++.+++|+++....++.++..|-+.. ..-..+|.+++-
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 3566677888999999999999999999987653332 233445544443
No 144
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=38.31 E-value=62 Score=23.71 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=43.9
Q ss_pred CChHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703 15 DNLDMMVANAERLYY-GCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~-~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~ 66 (79)
-+.+|-++-|..-|. +.+.+.|.+|=+..|+.-|.+....-.||--|.+++.
T Consensus 33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d 85 (280)
T PF05843_consen 33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND 85 (280)
T ss_dssp S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc
Confidence 357899999999888 6777779999999999999999999999999999985
No 145
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=37.87 E-value=59 Score=23.69 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVL 44 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL 44 (79)
-++...|+.+|.+.+|.++.++++--|
T Consensus 247 ~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 247 TLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 578899999999999999999988544
No 146
>KOG0543|consensus
Probab=36.46 E-value=58 Score=26.33 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703 20 MVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54 (79)
Q Consensus 20 l~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L 54 (79)
.+..|-.+--..+|.+|..-|+++|+.||-|...|
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 34556666777899999999999999999998766
No 147
>KOG4340|consensus
Probab=36.25 E-value=59 Score=26.37 Aligned_cols=51 Identities=22% Similarity=0.218 Sum_probs=41.5
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CC--------------CCCCchHHHHHHHHhh
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSR----DP--------------YHTACLPLHIACLVEM 64 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~----Dp--------------yn~~~LP~hiacL~EL 64 (79)
|-|+=|.-+.|=.+|.++++.++++.+++|+++ .| +-.+.+-+|+|.++|-
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 446778888999999999999999999999864 33 2346788999999884
No 148
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=35.78 E-value=59 Score=28.80 Aligned_cols=49 Identities=16% Similarity=0.022 Sum_probs=39.8
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q psy3703 13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLV 62 (79)
Q Consensus 13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~ 62 (79)
.++|...+...|+.+=..+++++++++=+++|+.||-|..+|= ++|=.+
T Consensus 112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLN-n~AY~~ 160 (906)
T PRK14720 112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVK-KLATSY 160 (906)
T ss_pred hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHH-HHHHHH
Confidence 4566788999999988999999999999999999988777654 444333
No 149
>KOG3824|consensus
Probab=35.67 E-value=60 Score=26.42 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703 19 MMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54 (79)
Q Consensus 19 vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L 54 (79)
..+..|.+++-+|+-+.+..+-+..|+.+|-|+++|
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L 153 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQIL 153 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHH
Confidence 345678999999999999999999999999998765
No 150
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=35.61 E-value=1.3e+02 Score=24.54 Aligned_cols=32 Identities=3% Similarity=-0.017 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDP 48 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dp 48 (79)
+.+-.+.|-....+++++++...-++.++.+|
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p 451 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM 451 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 34444445555555555555555555555555
No 151
>KOG2002|consensus
Probab=34.86 E-value=61 Score=29.20 Aligned_cols=34 Identities=15% Similarity=0.370 Sum_probs=29.5
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy3703 14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRD 47 (79)
Q Consensus 14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~D 47 (79)
.+|||++.-.|-.+|..++|+.|..++...+..-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999998877654
No 152
>KOG0495|consensus
Probab=34.10 E-value=1.2e+02 Score=26.84 Aligned_cols=54 Identities=11% Similarity=0.103 Sum_probs=46.3
Q ss_pred CCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 12 VLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 12 ~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
.=.+|+-|+++.|..+|..-+|+.|.+.-.+.++.||-+.+.--....-=.+.|
T Consensus 812 kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 812 KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 346899999999999999999999999999999999999998777666444444
No 153
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=34.05 E-value=90 Score=23.09 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT 51 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~ 51 (79)
..+|.+...+..++..++++++.++-+++++..|-..
T Consensus 215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 3688999999999999999999999999999988543
No 154
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=34.03 E-value=99 Score=21.10 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLSR 46 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~ 46 (79)
.||.+-+||.++..++..++.+.-.+|-++
T Consensus 133 aEvyL~~AEA~~~~g~~~~A~~~lN~vR~R 162 (266)
T PF07980_consen 133 AEVYLIYAEALARLGNTAEALEYLNQVRKR 162 (266)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999888864
No 155
>KOG3785|consensus
Probab=33.07 E-value=1.1e+02 Score=25.43 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHH
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIAC 60 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiac 60 (79)
-|+.+..|-..|.-+||+++++.-+.+...|.- ..-|-+++||
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~-~~el~vnLAc 99 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDA-PAELGVNLAC 99 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCC-CcccchhHHH
Confidence 578899999999999999999999999986543 3345566665
No 156
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=32.85 E-value=64 Score=21.94 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcch
Q psy3703 19 MMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNS 69 (79)
Q Consensus 19 vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n~ 69 (79)
|.+-|.-.+-++|||++++.+-+.. + .++..|.--=|=.-+|...+
T Consensus 41 v~lIRlsSLmNrG~Yq~Al~l~~~~----~-~pdlepw~ALce~rlGl~s~ 86 (115)
T TIGR02508 41 VQLIRLSSLMNRGDYQSALQLGNKL----C-YPDLEPWLALCEWRLGLGSA 86 (115)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCC----C-CchHHHHHHHHHHhhccHHH
Confidence 5667888999999999999775544 4 67788877666666665443
No 157
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.79 E-value=1.2e+02 Score=18.48 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CCCCchHHHHHHHHhhCC
Q psy3703 20 MVANAERLYYGCAYKKCFTITEQVLSRDP--YHTACLPLHIACLVEMNK 66 (79)
Q Consensus 20 l~~~Ae~ly~~~~f~~c~~it~~iL~~Dp--yn~~~LP~hiacL~EL~~ 66 (79)
++..|...+..|+++++.+..++.++.-. -...||-.-+..+.++.+
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l~~ 92 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANLLK 92 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhh
Confidence 56789999999999999999998886443 445566666667766654
No 158
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=32.64 E-value=1.3e+02 Score=23.29 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=34.4
Q ss_pred CCCCCChHHHHH---HHHHHHHhCCHHHHHHHHHHHHhcCCC-CCCchHHHH
Q psy3703 11 SVLPDNLDMMVA---NAERLYYGCAYKKCFTITEQVLSRDPY-HTACLPLHI 58 (79)
Q Consensus 11 ~~L~~N~Dvl~~---~Ae~ly~~~~f~~c~~it~~iL~~Dpy-n~~~LP~hi 58 (79)
|.-.+|-.+-++ -...+=.+|-|+.++++|+-+|..||- .+-++-++|
T Consensus 94 ~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~I 145 (360)
T PF04910_consen 94 YRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFI 145 (360)
T ss_pred CccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHH
Confidence 455566665443 456677899999999999999999998 444444433
No 159
>KOG1129|consensus
Probab=32.13 E-value=86 Score=25.69 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=40.0
Q ss_pred CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703 11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54 (79)
Q Consensus 11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L 54 (79)
.....|+-.++..|.-+=....++++.++-+.+|+.||-|-+.+
T Consensus 284 d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEai 327 (478)
T KOG1129|consen 284 DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAI 327 (478)
T ss_pred hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceee
Confidence 66788999999999999999999999999999999999987654
No 160
>KOG0624|consensus
Probab=31.86 E-value=1.1e+02 Score=25.20 Aligned_cols=49 Identities=8% Similarity=0.164 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
-=+++..+...|.+||++.+.+.++.||+.-|+.-+..-.---|.++-+
T Consensus 155 ~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 155 HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC
Confidence 3467888999999999999999999999999987654444444555443
No 161
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=31.85 E-value=87 Score=26.01 Aligned_cols=41 Identities=10% Similarity=0.070 Sum_probs=33.5
Q ss_pred CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703 11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT 51 (79)
Q Consensus 11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~ 51 (79)
..+++-.-...++||.+|..+++++++.-..+..++-.-++
T Consensus 419 ~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~ 459 (484)
T COG4783 419 AELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGF 459 (484)
T ss_pred HHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCc
Confidence 45777788899999999999999999998887776554433
No 162
>KOG1127|consensus
Probab=31.63 E-value=75 Score=29.11 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703 21 VANAERLYYGCAYKKCFTITEQVLSRDPYHTA 52 (79)
Q Consensus 21 ~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~ 52 (79)
+-.|..--.+-+|+++++.++++|+.||-|-.
T Consensus 6 LK~Ak~al~nk~YeealEqskkvLk~dpdNYn 37 (1238)
T KOG1127|consen 6 LKSAKDALRNKEYEEALEQSKKVLKEDPDNYN 37 (1238)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhcCCCcch
Confidence 45677788899999999999999999997654
No 163
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=31.17 E-value=84 Score=21.36 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=36.6
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---C-CCCCchHHHHH
Q psy3703 13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRD---P-YHTACLPLHIA 59 (79)
Q Consensus 13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~D---p-yn~~~LP~hia 59 (79)
=+...||+...--++|.-|+|+++++|..-.++.+ | -....+|..||
T Consensus 44 ~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~~f~R~~~t~va 94 (132)
T PF05944_consen 44 SGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMPDRFKRTLPTFVA 94 (132)
T ss_pred CCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCCccccccCcchHHHH
Confidence 34556899999999999999999999999999865 2 22336666654
No 164
>PF09427 DUF2014: Domain of unknown function (DUF2014) ; InterPro: IPR019006 This domain is found at the C-terminal of a family of ER membrane bound transcription factors called sterol regulatory element binding proteins (SREBP).
Probab=30.86 E-value=94 Score=23.83 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 31 CAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 31 ~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
..|+++=++-+.+-.. -+.+.||-|+|.|+|..
T Consensus 102 ~~Wn~AR~l~~~l~~~--~~~d~LP~HLa~Lle~d 134 (260)
T PF09427_consen 102 YQWNEARQLNRILPSL--DHDDALPEHLAALLEQD 134 (260)
T ss_pred HHHHHHHHHHHhcccc--CCcccchHHHHHHHhcc
Confidence 3455555554443333 67889999999999997
No 165
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.59 E-value=1e+02 Score=22.19 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCC---CCCchHHHHHHHHhhCCc
Q psy3703 19 MMVANAERLYYGCAYKKCFTITEQVLS---RDPY---HTACLPLHIACLVEMNKS 67 (79)
Q Consensus 19 vl~~~Ae~ly~~~~f~~c~~it~~iL~---~Dpy---n~~~LP~hiacL~EL~~~ 67 (79)
|....|+.+|..++|+++.++-+.+.. .+.. -..++..-.-|..+++..
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 566789999999999999999998863 2333 345677777777777753
No 166
>PF13643 DUF4145: Domain of unknown function (DUF4145)
Probab=29.77 E-value=89 Score=18.34 Aligned_cols=22 Identities=23% Similarity=0.310 Sum_probs=18.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Q psy3703 23 NAERLYYGCAYKKCFTITEQVLS 45 (79)
Q Consensus 23 ~Ae~ly~~~~f~~c~~it~~iL~ 45 (79)
+|+++|.+. +..|...+.++|+
T Consensus 2 eA~~~~~~~-~~~a~~~~R~~lE 23 (87)
T PF13643_consen 2 EAERCYNSD-PRAAAVMARRALE 23 (87)
T ss_pred HHHHHHhcC-HHHHHHHHHHHHH
Confidence 588899987 9998888877775
No 167
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=29.35 E-value=37 Score=16.66 Aligned_cols=11 Identities=36% Similarity=0.374 Sum_probs=8.2
Q ss_pred chHHHHHHHHh
Q psy3703 53 CLPLHIACLVE 63 (79)
Q Consensus 53 ~LP~hiacL~E 63 (79)
.-|+|+||...
T Consensus 3 ~TpLh~A~~~~ 13 (33)
T PF00023_consen 3 NTPLHYAAQRG 13 (33)
T ss_dssp BBHHHHHHHTT
T ss_pred ccHHHHHHHHH
Confidence 35899998754
No 168
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=28.44 E-value=1.8e+02 Score=23.14 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhh
Q psy3703 16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEM 64 (79)
Q Consensus 16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL 64 (79)
++++..-.|..+....+-.++.++..+.|+..|-....|-+....|..-
T Consensus 199 ~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 199 DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 3555555566666666666666666666666665544444444444433
No 169
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=28.29 E-value=1.7e+02 Score=25.99 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=45.8
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcchhh
Q psy3703 13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNSKL 71 (79)
Q Consensus 13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n~LF 71 (79)
.+...|++...=+.+...-+|++|+.+-+.||+.||-|+...+=-+-|..+-=+-..+|
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ 277 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLL 277 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchH
Confidence 34455666666678888889999999999999999999999888888877543334444
No 170
>KOG0775|consensus
Probab=28.07 E-value=57 Score=25.50 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=30.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy3703 8 PSLSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYH 50 (79)
Q Consensus 8 p~~~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn 50 (79)
|....+..|--|+.++|=-.|.++.|++=|.| |+...|-
T Consensus 90 p~~~~~~~nEsvLkArA~vafH~gnf~eLY~i----LE~h~Fs 128 (304)
T KOG0775|consen 90 PVCEELLKNESVLKARAVVAFHSGNFRELYHI----LENHKFS 128 (304)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcccHHHHHHH----HHhccCC
Confidence 33355678889999999999999999999875 4555553
No 171
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.95 E-value=1.3e+02 Score=23.52 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=34.6
Q ss_pred CCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy3703 12 VLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYH 50 (79)
Q Consensus 12 ~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn 50 (79)
.-.+|.+..+..|+.+..++|.+++++.--.||++|--.
T Consensus 231 adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 231 ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 446789999999999999999999999999999987643
No 172
>KOG1840|consensus
Probab=26.70 E-value=86 Score=25.84 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy3703 19 MMVANAERLYYGCAYKKCFTITEQVLS 45 (79)
Q Consensus 19 vl~~~Ae~ly~~~~f~~c~~it~~iL~ 45 (79)
++...|..++.+++|.++-..|+++++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~ 311 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALE 311 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 345678899999999888777776665
No 173
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=26.27 E-value=1e+02 Score=24.25 Aligned_cols=49 Identities=22% Similarity=0.378 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHh--------cCCCCCCch-------HHHHHHHHhhCC
Q psy3703 17 LDMMVANAERLYYGCAYKKCFTITEQVLS--------RDPYHTACL-------PLHIACLVEMNK 66 (79)
Q Consensus 17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~--------~Dpyn~~~L-------P~hiacL~EL~~ 66 (79)
.+++=.-||.+.-.-||+.++++|++-++ .+| ...|. -|=|-+|.||+.
T Consensus 35 ~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~-~~~~~evK~sLcvvGIQALAEmnr 98 (309)
T PF07163_consen 35 VSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEP-AGSSLEVKCSLCVVGIQALAEMNR 98 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccchhhhhhhhhhhhHHHHHHHhh
Confidence 47888999999999999999999998664 222 22222 245778888875
No 174
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=25.88 E-value=1.9e+02 Score=18.60 Aligned_cols=46 Identities=9% Similarity=0.143 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh------cCCCCCCchHHHHHHHHhhCC
Q psy3703 21 VANAERLYYGCAYKKCFTITEQVLS------RDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 21 ~~~Ae~ly~~~~f~~c~~it~~iL~------~Dpyn~~~LP~hiacL~EL~~ 66 (79)
.+.++-++.++..++|+++-.++-. .||.....-+.-|.-|..|+.
T Consensus 43 ~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~~ 94 (108)
T PF10366_consen 43 QELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLGN 94 (108)
T ss_pred HHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCCh
Confidence 3567889999999999999998877 344444554555888888875
No 175
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=25.78 E-value=1.1e+02 Score=24.70 Aligned_cols=30 Identities=20% Similarity=0.137 Sum_probs=27.1
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy3703 13 LPDNLDMMVANAERLYYGCAYKKCFTITEQ 42 (79)
Q Consensus 13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~ 42 (79)
-++++|-+++||+.+-..||++.+.+.-..
T Consensus 519 ~~~d~~~ilarae~~l~~gdL~~A~~~~~~ 548 (582)
T PF09731_consen 519 EGDDVESILARAEYYLERGDLDKAARELNQ 548 (582)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 678999999999999999999999887665
No 176
>PF11415 Toxin_37: Antifungal peptide termicin; InterPro: IPR024723 Termicin is a cysteine-rich antifungal peptide, which also exhibits weak antibacterial activity. The global fold of termicin consists of an alpha-helical segment and a two-stranded antiparallel beta-sheet forming a cysteine stabilised alphabeta motif that is also found in antibacterial and antifungal defensins from insects and from plants. The antifungal properties of termicin may be related to its marked hydrophobicity and its amphipatic structure compared to the antibacterial defensins [].; PDB: 1MM0_A.
Probab=25.77 E-value=62 Score=17.72 Aligned_cols=12 Identities=17% Similarity=0.883 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHH
Q psy3703 31 CAYKKCFTITEQ 42 (79)
Q Consensus 31 ~~f~~c~~it~~ 42 (79)
|+|++|.+.|++
T Consensus 1 C~~~~CWa~Cqa 12 (35)
T PF11415_consen 1 CDFQSCWANCQA 12 (35)
T ss_dssp --HHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 789999998875
No 177
>KOG0550|consensus
Probab=25.66 E-value=42 Score=27.78 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703 21 VANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65 (79)
Q Consensus 21 ~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~ 65 (79)
.-.|+.+=..+++.++..+|..||+.|+-|...+-|-=.||+-..
T Consensus 173 ~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~ 217 (486)
T KOG0550|consen 173 LLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYND 217 (486)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccccc
Confidence 345777888999999999999999999999999888777777554
No 178
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=25.25 E-value=1.4e+02 Score=23.10 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy3703 16 NLDMMVANAERLYYGCAYKKCFTITEQVL 44 (79)
Q Consensus 16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL 44 (79)
-+|.++..|+-+-.|++++++-++.++.|
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999999999999999887
No 179
>PF10666 Phage_Gp14: Phage protein Gp14; InterPro: IPR018923 This Listeria phage Gp14 protein family is of unknown function but is expressed from within a cluster of tail- and base plate genes [].
Probab=24.99 E-value=62 Score=22.61 Aligned_cols=17 Identities=6% Similarity=0.477 Sum_probs=14.7
Q ss_pred hCCHHHHHHHHHHHHhc
Q psy3703 30 GCAYKKCFTITEQVLSR 46 (79)
Q Consensus 30 ~~~f~~c~~it~~iL~~ 46 (79)
---|++||++|..|+..
T Consensus 89 e~tfee~Ye~~k~~~~M 105 (140)
T PF10666_consen 89 ENTFEECYEKCKDLVNM 105 (140)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 46799999999999864
No 180
>PF13606 Ank_3: Ankyrin repeat
Probab=24.25 E-value=46 Score=16.52 Aligned_cols=9 Identities=44% Similarity=0.656 Sum_probs=6.8
Q ss_pred hHHHHHHHH
Q psy3703 54 LPLHIACLV 62 (79)
Q Consensus 54 LP~hiacL~ 62 (79)
-|+|+||-.
T Consensus 4 T~Lh~A~~~ 12 (30)
T PF13606_consen 4 TPLHLAASN 12 (30)
T ss_pred CHHHHHHHh
Confidence 488999854
No 181
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=23.96 E-value=2.3e+02 Score=23.94 Aligned_cols=48 Identities=13% Similarity=0.004 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CCCchHHHHHHHHhhCCc
Q psy3703 20 MVANAERLYYGCAYKKCFTITEQVLSRDPY--HTACLPLHIACLVEMNKS 67 (79)
Q Consensus 20 l~~~Ae~ly~~~~f~~c~~it~~iL~~Dpy--n~~~LP~hiacL~EL~~~ 67 (79)
-...|..+...|+-+++.++...+++..|- ++.+==+-|.||.|++.-
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence 345677788899999999999999998883 566666779999999863
No 182
>PLN02789 farnesyltranstransferase
Probab=23.57 E-value=1.4e+02 Score=22.61 Aligned_cols=36 Identities=11% Similarity=-0.021 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCCCCc
Q psy3703 18 DMMVANAERLYYGC-AYKKCFTITEQVLSRDPYHTAC 53 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~-~f~~c~~it~~iL~~Dpyn~~~ 53 (79)
.+-..|+..+...+ +++++++.+.++++.+|-+..+
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa 108 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI 108 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH
Confidence 34444444555544 4566666666666666655443
No 183
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=23.54 E-value=1.5e+02 Score=21.08 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=28.6
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy3703 16 NLDMMVANAERLYYGCAYKKCFTITEQVLS 45 (79)
Q Consensus 16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~ 45 (79)
.+.|.+..|..++.+|+-.+|+.+-+.+++
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 789999999999999999999999999988
No 184
>PF07962 Swi3: Replication Fork Protection Component Swi3; InterPro: IPR012923 Replication fork pausing is required to initiate recombination events. More specifically, Swi1 is required for recombination near the mat1 locus. Swi3 has been found to co-purify with Swi1. Together they define a fork protection complex that coordinates leading- and lagging-strand synthesis and stabilises stalled replication forks []. This complex is required for accurate replication, fork protection and replication checkpoint signalling [, ].; GO: 0006974 response to DNA damage stimulus, 0007049 cell cycle, 0048478 replication fork protection, 0005634 nucleus
Probab=22.91 E-value=1.2e+02 Score=18.75 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=24.2
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy3703 13 LPDNLDMMVANAERLYYGCAYKKCFTITEQV 43 (79)
Q Consensus 13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~i 43 (79)
|..=..+..-.|..+|=...|++|++.++++
T Consensus 35 L~~ll~~Yq~W~h~LfPk~~F~d~i~~vE~L 65 (83)
T PF07962_consen 35 LRRLLQFYQLWAHRLFPKASFEDFIERVEKL 65 (83)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3333445566789999999999999999876
No 185
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=22.40 E-value=2.7e+02 Score=19.68 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK 66 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~ 66 (79)
+++++-+-.+-.+-.+++|.+|..|-..+-+..+-.+-+--+.-=||+-++.
T Consensus 42 ~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 42 NLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred CccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 4455666667778889999999999999988887666666677778877764
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=22.15 E-value=2.2e+02 Score=21.97 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHH
Q psy3703 15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPL 56 (79)
Q Consensus 15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~ 56 (79)
+|+-.+.=.|-.+|.++||+++...=+.+|+..|=+-+-.++
T Consensus 225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ 266 (287)
T COG4235 225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSL 266 (287)
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHH
Confidence 566667778889999999999999999999998876554443
No 187
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=21.73 E-value=47 Score=22.54 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=25.0
Q ss_pred CCCCCCCCC--CCC--CCChHHHHHHHHHHHHhCCHHHHHH
Q psy3703 2 IKKYEVPSL--SVL--PDNLDMMVANAERLYYGCAYKKCFT 38 (79)
Q Consensus 2 l~ky~~p~~--~~L--~~N~Dvl~~~Ae~ly~~~~f~~c~~ 38 (79)
|+||+...+ ..| +.++++.++--+.+..++....|+.
T Consensus 29 Lr~F~y~~ALD~aL~~~~~p~~~vavl~EL~~R~~L~~AL~ 69 (148)
T PF09384_consen 29 LRKFRYKKALDAALVKNKSPEVVVAVLEELIRRGALRAALA 69 (148)
T ss_pred HHcCCHHHHHHHHHhcCCChHHHHHHHHHHHHccHHHHHHH
Confidence 455555555 444 6777777777777777777777765
No 188
>KOG1936|consensus
Probab=21.03 E-value=79 Score=26.38 Aligned_cols=21 Identities=33% Similarity=0.871 Sum_probs=15.3
Q ss_pred HHHHHhCCH------------HHHHHHHHHHHh
Q psy3703 25 ERLYYGCAY------------KKCFTITEQVLS 45 (79)
Q Consensus 25 e~ly~~~~f------------~~c~~it~~iL~ 45 (79)
-+-|+|||| .+|+.|-.++|+
T Consensus 172 ~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~ 204 (518)
T KOG1936|consen 172 YREFYQCDFDIAGQFDPMIPDAECLKIVVEILS 204 (518)
T ss_pred hhhhhccCccccccCCCCCchHHHHHHHHHHHh
Confidence 367899999 467777766664
No 189
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=20.69 E-value=2.6e+02 Score=19.27 Aligned_cols=30 Identities=3% Similarity=-0.135 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLSRD 47 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~D 47 (79)
+.....|+.++..||+++|++.-+++.+.-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~ 66 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYC 66 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 566789999999999999999999877653
No 190
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=20.68 E-value=1.7e+02 Score=23.78 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy3703 20 MVANAERLYYGCAYKKCFTITEQVLSRDPY 49 (79)
Q Consensus 20 l~~~Ae~ly~~~~f~~c~~it~~iL~~Dpy 49 (79)
.+..|=++|+.++|++|.+.-..||-.=|.
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l 236 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHSIPL 236 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhe
Confidence 344788999999999999999999976554
No 191
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=20.55 E-value=1.3e+02 Score=18.58 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703 35 KCFTITEQVLSRDPYHTACLPLHIACLVEMNKS 67 (79)
Q Consensus 35 ~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~ 67 (79)
+|-++++++++.+=-=.+++-+|..++.||...
T Consensus 22 ~~~~~~r~~i~~~I~PEeIv~iH~~~v~~l~~~ 54 (77)
T PF08673_consen 22 QAQEFGRELIEKDISPEEIVEIHKSAVQELSPS 54 (77)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccc
Confidence 788999999999988889999999999999765
No 192
>KOG4234|consensus
Probab=20.16 E-value=1.7e+02 Score=22.51 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703 18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT 51 (79)
Q Consensus 18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~ 51 (79)
--+..||+.+=.--.|+++++=-.+|++.||-+.
T Consensus 169 kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 169 KALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 4456779888888899999999999999999764
Done!