RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3703
         (79 letters)



>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
          complex, cell cycle, mitosis, cyclosome, TPR,
          ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo
          sapiens}
          Length = 330

 Score = 55.8 bits (135), Expect = 3e-11
 Identities = 30/60 (50%), Positives = 45/60 (75%)

Query: 9  SLSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN 68
          S+  L +NLD++V+ AER YY C +K C+ +T  V+ +DP+H +CLP+HI  LVE+NK+N
Sbjct: 14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN 73


>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
           ligase; 2.60A {Schizosaccharomyces pombe}
          Length = 597

 Score = 50.6 bits (121), Expect = 3e-09
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 9   SLSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN 68
           S++ L  + D+++  A+ L+    +     IT ++L  DPY+    PLH+A L E  + N
Sbjct: 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 0.36
 Identities = 19/92 (20%), Positives = 25/92 (27%), Gaps = 38/92 (41%)

Query: 3   KKYEVPSLSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSR--------DPYHTACL 54
           K ++   LSV P +                      I   +LS         D       
Sbjct: 373 KMFD--RLSVFPPSAH--------------------IPTILLSLIWFDVIKSDVMVVVNK 410

Query: 55  PLHIACLVEMNKSNSK-------LKKKKKKKN 79
            LH   LVE     S        L+ K K +N
Sbjct: 411 -LHKYSLVEKQPKESTISIPSIYLELKVKLEN 441


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 0.60
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 24/89 (26%)

Query: 6    EVPSLSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN 65
             VP   +   N  M+  N  R+    + +    + E+V  R    T  L + I      N
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR----TGWL-VEIVNY---N 1847

Query: 66   KSNS----------------KLKKKKKKK 78
              N                  L   K +K
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKLQK 1876


>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
           ribosomal protein,hydrolase; 9.50A {Saccharomyces
           cerevisiae}
          Length = 611

 Score = 25.8 bits (57), Expect = 1.6
 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 49  YHTACLPLHIACLVE-MNKSNSKLKKKKK 76
                 P  I  L+  ++K N+  KKK +
Sbjct: 529 IGVKEQPARIKRLISFIDKGNTASKKKIR 557


>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
           beta-barrel, translational GTPase, D structural
           genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
          Length = 483

 Score = 25.3 bits (56), Expect = 2.0
 Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 50  HTACLPLHIACLVE-MNKSNSKLKKKKK 76
                P  I  L+  ++K N+  KKK +
Sbjct: 396 GVKEQPARIKRLISFIDKGNTASKKKIR 423


>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex,
           oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB:
           1v94_A 1xgv_A 1xkd_A*
          Length = 435

 Score = 25.4 bits (56), Expect = 2.3
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 2   IKKYEVPSLSVLPDNLDMMVA--NAERLYYG 30
           ++ Y  P+     D +DM++   N E +Y G
Sbjct: 138 VRYYGQPAPHKYADRVDMVIFRENTEDVYAG 168


>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
           AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
           AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
           PDB: 2vd6_A*
          Length = 503

 Score = 24.2 bits (53), Expect = 6.4
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 6/34 (17%)

Query: 14  PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRD 47
            + LD MV   E+      +K+ F IT Q  +R 
Sbjct: 241 VEQLDKMVT--EKA----GFKRAFIITGQTYTRK 268


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,120,701
Number of extensions: 50952
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 10
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)