RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3703
         (79 letters)



>d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase
          {Vibrio cholerae [TaxId: 666]}
          Length = 364

 Score = 27.0 bits (58), Expect = 0.22
 Identities = 6/42 (14%), Positives = 13/42 (30%)

Query: 5  YEVPSLSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSR 46
            +PS+        ++ A AE+   G          + +   
Sbjct: 7  DRIPSIVASSVTPGVVTAFAEKRVGGGDPGALSNTNDIITRT 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0406    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 284,856
Number of extensions: 10533
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 2
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)