BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3706
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 106/190 (55%), Gaps = 21/190 (11%)
Query: 68 KLPGF----NIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLGSSS 123
+LPG + YSG+ + + S L +WF +++ P N+PV+LWLN G G SS
Sbjct: 9 RLPGLAKQPSFRQYSGYLKSSG------SKHLHYWFVESQKDPENSPVVLWLNGGPGCSS 62
Query: 124 MTGLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDYDLYSR 183
+ GL E+GP + + +E W+ NV+Y+++P G GFS+++D Y+
Sbjct: 63 LDGLLTEHGPFLVQPDGVT-----LEYNPYSWNLIANVLYLESPAGVGFSYSDD-KFYAT 116
Query: 184 NKTQVGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQNNPVTDIKINL 243
N T+V + + AL FF++F EY+ N F+TGE+Y G + +L + Q D +NL
Sbjct: 117 NDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ-----DPSMNL 171
Query: 244 KGFALGNDLT 253
+G A+GN L+
Sbjct: 172 QGLAVGNGLS 181
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 106/190 (55%), Gaps = 21/190 (11%)
Query: 68 KLPGF----NIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLGSSS 123
+LPG + YSG+ + + S L +WF +++ P N+PV+LWLN G G SS
Sbjct: 11 RLPGLAKQPSFRQYSGYLKGSG------SKHLHYWFVESQKDPENSPVVLWLNGGPGCSS 64
Query: 124 MTGLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDYDLYSR 183
+ GL E+GP + + +E W+ NV+Y+++P G GFS+++D Y+
Sbjct: 65 LDGLLTEHGPFLVQPDGVT-----LEYNPYSWNLIANVLYLESPAGVGFSYSDD-KFYAT 118
Query: 184 NKTQVGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQNNPVTDIKINL 243
N T+V + + AL FF++F EY+ N F+TGE+Y G + +L + Q D +NL
Sbjct: 119 NDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ-----DPSMNL 173
Query: 244 KGFALGNDLT 253
+G A+GN L+
Sbjct: 174 QGLAVGNGLS 183
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 98/198 (49%), Gaps = 20/198 (10%)
Query: 63 KLSEVKLPGF--NIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLG 120
K+ + K+ G N+ Y+G+ V EDK + FFW F + P+ PV+LWLN G G
Sbjct: 1 KIKDPKILGIDPNVTQYTGYLDVED-EDKHF----FFWTFESRNDPAKDPVILWLNGGPG 55
Query: 121 SSSMTGLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDYDL 180
SS+TGLF E GP + + K PY W+ N VI++D PV GFS++ +
Sbjct: 56 CSSLTGLFFELGPSSIGPDLKPIGNPYS------WNSNATVIFLDQPVNVGFSYSGSSGV 109
Query: 181 YSRNKTQVGLNLYIALVQFFKVFNEY--QRNDFFITGETYIGQFGTSLGFNIYQNNPVTD 238
N G ++Y L FF F EY + DF I GE+Y G + I + D
Sbjct: 110 --SNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSH---KD 164
Query: 239 IKINLKGFALGNDLTDPL 256
NL +GN LTDPL
Sbjct: 165 RNFNLTSVLIGNGLTDPL 182
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 96/198 (48%), Gaps = 20/198 (10%)
Query: 63 KLSEVKLPGF--NIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLG 120
K+ + K+ G N+ Y+G+ V EDK + FFW F + P+ PV+LWLN G G
Sbjct: 1 KIKDPKILGIDPNVTQYTGYLDVED-EDKHF----FFWTFESRNDPAKDPVILWLNGGPG 55
Query: 121 SSSMTGLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDYDL 180
SS+TGLF GP + + K PY W+ N VI++D PV GFS++ +
Sbjct: 56 CSSLTGLFFALGPSSIGPDLKPIGNPYS------WNSNATVIFLDQPVNVGFSYSGSSGV 109
Query: 181 YSRNKTQVGLNLYIALVQFFKVFNEY--QRNDFFITGETYIGQFGTSLGFNIYQNNPVTD 238
N G ++Y L FF F EY + DF I G +Y G + I + D
Sbjct: 110 --SNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHK---D 164
Query: 239 IKINLKGFALGNDLTDPL 256
NL +GN LTDPL
Sbjct: 165 RNFNLTSVLIGNGLTDPL 182
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 114/216 (52%), Gaps = 18/216 (8%)
Query: 70 PGFNIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLGSSSMT-GLF 128
P + + YSG+ V D+ +LF+ A E AP++LWLN G G SS+ G
Sbjct: 18 PAVDFDMYSGYITV----DEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVAYGAS 73
Query: 129 QENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAE-DYDLYSRNKTQ 187
+E G ++ + L E R W+K NV+++D+P G GFS+ D+Y+ +
Sbjct: 74 EELGAFRVKP--RGAGLVLNEYR---WNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 128
Query: 188 VGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQN-NPVTDIKINLKGF 246
+ Y L ++F+ F Y+ DF+I GE+Y G + L ++++ NPV INLKGF
Sbjct: 129 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPV----INLKGF 184
Query: 247 ALGNDLTDPLYMMLYS-KYLYQIGLI-DDNGRKLFE 280
+GN L D + + + ++ + G++ DD R+L E
Sbjct: 185 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKE 220
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 114/216 (52%), Gaps = 18/216 (8%)
Query: 70 PGFNIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLGSSSMT-GLF 128
P + + YSG+ V D+ +LF+ A E AP++LWLN G G SS+ G
Sbjct: 13 PAVDFDMYSGYITV----DEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVAYGAS 68
Query: 129 QENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAE-DYDLYSRNKTQ 187
+E G ++ + L E R W+K NV+++D+P G GFS+ D+Y+ +
Sbjct: 69 EELGAFRVKP--RGAGLVLNEYR---WNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 123
Query: 188 VGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQN-NPVTDIKINLKGF 246
+ Y L ++F+ F Y+ DF+I GE+Y G + L ++++ NPV INLKGF
Sbjct: 124 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPV----INLKGF 179
Query: 247 ALGNDLTDPLYMMLYS-KYLYQIGLI-DDNGRKLFE 280
+GN L D + + + ++ + G++ DD R+L E
Sbjct: 180 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKE 215
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 114/216 (52%), Gaps = 18/216 (8%)
Query: 70 PGFNIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLGSSSMT-GLF 128
P + + YSG+ V D+ +LF+ A E AP++LWLN G G SS+ G
Sbjct: 14 PAVDFDMYSGYITV----DEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVAYGAS 69
Query: 129 QENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAE-DYDLYSRNKTQ 187
+E G ++ + L E R W+K NV+++D+P G GFS+ D+Y+ +
Sbjct: 70 EELGAFRVKP--RGAGLVLNEYR---WNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 124
Query: 188 VGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQN-NPVTDIKINLKGF 246
+ Y L ++F+ F Y+ DF+I GE+Y G + L ++++ NPV INLKGF
Sbjct: 125 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPV----INLKGF 180
Query: 247 ALGNDLTDPLYMMLYS-KYLYQIGLI-DDNGRKLFE 280
+GN L D + + + ++ + G++ DD R+L E
Sbjct: 181 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKE 216
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 112/216 (51%), Gaps = 18/216 (8%)
Query: 70 PGFNIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLGSSSMT-GLF 128
P + + YSG+ V D+ +LF+ A E AP++LWLN G G SS+ G
Sbjct: 18 PAVDFDMYSGYITV----DEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVAYGAS 73
Query: 129 QENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAE-DYDLYSRNKTQ 187
+E G ++ L + W+K NV+++D+P G GFS+ D+Y+ +
Sbjct: 74 EELGAFRVKPAGAGLVL-----NEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 128
Query: 188 VGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQN-NPVTDIKINLKGF 246
+ Y L ++F+ F Y+ DF+I GE+Y G + L ++++ NPV INLKGF
Sbjct: 129 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPV----INLKGF 184
Query: 247 ALGNDLTDPLYMMLYS-KYLYQIGLI-DDNGRKLFE 280
+GN L D + + + ++ + G++ DD R+L E
Sbjct: 185 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKE 220
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 105/226 (46%), Gaps = 22/226 (9%)
Query: 64 LSEVKLPGFNIESYSGFFRVNSTE-DKKYSSAL--FFWFFPAEEYPSNA--PVLLWLNAG 118
LSEV P + ++G + S + D++ SS L FFW F + N P+++WLN G
Sbjct: 17 LSEVPDPSNIPQMHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGG 76
Query: 119 LGSSSMTGLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDY 178
G SSM G E+GP ++N + K + + W ++++ID P G GFS ++
Sbjct: 77 PGCSSMDGALVESGPFRVNSDGK------LYLNEGSWISKGDLLFIDQPTGTGFSVEQNK 130
Query: 179 DLYSRNKTQVGLNLYIA-------LVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIY 231
D +K + +L L +FK+F E ++GE+Y GQ+ I
Sbjct: 131 DEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAIL 190
Query: 232 QNNPVTDIK---INLKGFALGNDLTDPLYMML-YSKYLYQIGLIDD 273
+N + I +LK +GN DP L Y + + LID+
Sbjct: 191 NHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDE 236
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 11/194 (5%)
Query: 86 TEDKKYSSALFFWFFPAEEYPSNAPVL-LWLNAGLGSSSMT-GLFQENGPLQLNKNKKRQ 143
T D AL++WF A+ A L LWLN G G SS+ G QE G +++ N +
Sbjct: 30 TIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGCSSIGLGAMQELGAFRVHTNGESL 89
Query: 144 PLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDYDLYSRNKTQVGLNLYIALVQFFKVF 203
L + W+K N+++ ++P G GFS++ S ++ + Y LV++F+ F
Sbjct: 90 LL-----NEYAWNKAANILFAESPAGVGFSYSNTSSDLSMGDDKMAQDTYTFLVKWFERF 144
Query: 204 NEYQRNDFFITGETYIGQFGTSLGFNIYQNNPVTDIKINLKGFALGNDLT-DPLYMMLYS 262
Y +F+I GE+ G F L +Y+N + IN +G + + LT D M+
Sbjct: 145 PHYNYREFYIAGES--GHFIPQLSQVVYRNRNNSPF-INFQGLLVSSGLTNDHEDMIGMF 201
Query: 263 KYLYQIGLIDDNGR 276
+ + GLI D R
Sbjct: 202 ESWWHHGLISDETR 215
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|B Chain B, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|C Chain C, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|D Chain D, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
Length = 362
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 225 SLGFNIYQNNPVTDIKINLKGFALGNDLTDPLYM--MLYSKYLYQIGLIDDNGRKLF 279
SLGF++Y+++P + + + GF L L + ++ + Y I ++ N R F
Sbjct: 298 SLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHIESLEANARSFF 354
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 261 YSKYLYQIGLIDDNGRKLFEYKEKQITD------------LIFQKKLGEAFDVYDELIVG 308
YS Y + LID + R L++Y +K+ TD L+ K+ +V DE+I
Sbjct: 168 YSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITK 227
Query: 309 TFHDK 313
T K
Sbjct: 228 TLDGK 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,611,944
Number of Sequences: 62578
Number of extensions: 548065
Number of successful extensions: 1123
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 15
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)