RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3706
(443 letters)
>gnl|CDD|215926 pfam00450, Peptidase_S10, Serine carboxypeptidase.
Length = 415
Score = 197 bits (504), Expect = 1e-58
Identities = 95/331 (28%), Positives = 140/331 (42%), Gaps = 35/331 (10%)
Query: 70 PGF----NIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLGSSSMT 125
PG + YSG+ V+ + + +LF+WFF +E P N P++LWLN G G SS+
Sbjct: 1 PGLDGPLPFKQYSGYLTVDESAGR----SLFYWFFESENNPENDPLVLWLNGGPGCSSLG 56
Query: 126 GLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDYDLYSRNK 185
GLF+E GP ++N PY W+K NV+++D PVG GFS++ Y +
Sbjct: 57 GLFEELGPFRVNSGPTLYLNPYS------WNKVANVLFLDQPVGVGFSYSNTTSDYKTDD 110
Query: 186 TQVGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQ-NNPVTDIKINLK 244
+ + Y L +FF+ F EY+ N F+I GE+Y G + +L I N T INLK
Sbjct: 111 EETAKDNYEFLQKFFEKFPEYKNNPFYIAGESYAGHYVPALAQEILDGNKKGTGPNINLK 170
Query: 245 GFALGNDLTDPLYMMLYS-KYLYQIGLIDDNGRKLFE----YKEKQITDLIFQKKLGEAF 299
G +GN LTDP + Y GLI D + + K K
Sbjct: 171 GVLIGNGLTDPAIQYNSYIPFAYYHGLISDELYESLKKACCGKYPDCDPAN--TKCLNLV 228
Query: 300 DVYDELIVGTFHDKTIYNTLT----NFTNLYNYQVPIADNT----PNTLMVELFNTTTFR 351
+ YN T N + N + + + + N R
Sbjct: 229 EEASGCNAYN-GGINPYNIYTPCCYNSSLSLNPSSTDSCGGYDCYDESYVEKYLNRPDVR 287
Query: 352 KAVHVGNTTYDTSV--TEDVF--LKNDIMGS 378
KA+H + ++VF +DI S
Sbjct: 288 KALHANKGSVGEWSRCNDEVFNWYGDDISKS 318
>gnl|CDD|240429 PTZ00472, PTZ00472, serine carboxypeptidase (CBP1); Provisional.
Length = 462
Score = 130 bits (328), Expect = 2e-33
Identities = 68/189 (35%), Positives = 95/189 (50%), Gaps = 14/189 (7%)
Query: 70 PGFNIESYSGFFRVNSTE-DKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLGSSSMTGLF 128
P N +SG+F + + DK Y F+W F APVLLW+ G G SSM L
Sbjct: 43 PSVN--QWSGYFDIPGNQTDKHY----FYWAFGPRNGNPEAPVLLWMTGGPGCSSMFALL 96
Query: 129 QENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDYDLYSRNKTQV 188
ENGP +N+ + W+ VIY+D P G GFS+A+ D Y N+++V
Sbjct: 97 AENGPCLMNETTGD-----IYNNTYSWNNEAYVIYVDQPAGVGFSYADKAD-YDHNESEV 150
Query: 189 GLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQNNPVTD-IKINLKGFA 247
++Y L FF + + ND F+ GE+Y G + + + I N D + INL G A
Sbjct: 151 SEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLA 210
Query: 248 LGNDLTDPL 256
+GN LTDP
Sbjct: 211 VGNGLTDPY 219
>gnl|CDD|177859 PLN02209, PLN02209, serine carboxypeptidase.
Length = 437
Score = 97.4 bits (242), Expect = 5e-22
Identities = 56/190 (29%), Positives = 102/190 (53%), Gaps = 10/190 (5%)
Query: 69 LPGFN----IESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLGSSSM 124
LPGF E +G+ + E+ ++ F++F +++ P P+++WLN G G S +
Sbjct: 28 LPGFKGPLPFELETGYIGIGEEENVQF----FYYFIKSDKNPQEDPLIIWLNGGPGCSCL 83
Query: 125 TGLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDYDLYSRN 184
+GLF ENGPL L +P + W+K N+I++D PVG GFS+++ + +
Sbjct: 84 SGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTANIIFLDQPVGSGFSYSKTPIERTSD 143
Query: 185 KTQVGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQNNPV-TDIKINL 243
++V ++ L ++ ++ N F++ G++Y G +L I + N + + INL
Sbjct: 144 TSEVK-KIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINL 202
Query: 244 KGFALGNDLT 253
+G+ LGN +T
Sbjct: 203 QGYVLGNPIT 212
>gnl|CDD|225490 COG2939, COG2939, Carboxypeptidase C (cathepsin A) [Amino acid
transport and metabolism].
Length = 498
Score = 97.5 bits (243), Expect = 8e-22
Identities = 59/193 (30%), Positives = 85/193 (44%), Gaps = 13/193 (6%)
Query: 86 TEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLGSSSMTGLFQENGPLQLNKN-KKRQP 144
T FF+ F + P+N PV+ WLN G G SS+TGL E GP ++ P
Sbjct: 78 TGYPDAEDFFFFYTFESPNDPANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYP 137
Query: 145 L-PYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDYDLYSRNKTQVGLNLYIALVQFFKVF 203
P W ++++ID PVG GFS A D ++ G ++Y L FF F
Sbjct: 138 DNPGS------WLDFADLVFIDQPVGTGFSRALG-DEKKKDFEGAGKDVYSFLRLFFDKF 190
Query: 204 NEYQRN--DFFITGETYIGQFGTSLGFNIYQNNPVTDIKINLKGFALGN-DLTDPL-YMM 259
Y R F+ GE+Y G + + ++N + +NL +GN TDPL +
Sbjct: 191 PHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSVLIGNGLWTDPLTQYL 250
Query: 260 LYSKYLYQIGLID 272
Y + G D
Sbjct: 251 TYEPIAAEKGPYD 263
>gnl|CDD|178590 PLN03016, PLN03016, sinapoylglucose-malate O-sinapoyltransferase.
Length = 433
Score = 89.7 bits (222), Expect = 2e-19
Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 17/214 (7%)
Query: 69 LPGFN----IESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLGSSSM 124
LPGF E +G+ + E+ ++ F++F +E P P+L+WLN G G S +
Sbjct: 26 LPGFEGPLPFELETGYIGIGEDENVQF----FYYFIKSENNPKEDPLLIWLNGGPGCSCL 81
Query: 125 TGLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDYDLYSRN 184
G+ ENGP+ L P + W+K N+I++D PVG GFS+++ + +
Sbjct: 82 GGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMANIIFLDQPVGSGFSYSKTPIDKTGD 141
Query: 185 KTQVGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQNNPV-TDIKINL 243
++V + L ++ +Y N ++ G++Y G +L I Q N + + INL
Sbjct: 142 ISEVK-RTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINL 200
Query: 244 KGFALGNDLTDPLYMMLYSK----YLYQIGLIDD 273
+G+ LGN +T YM Y Y +GLI D
Sbjct: 201 QGYMLGNPVT---YMDFEQNFRIPYAYGMGLISD 231
>gnl|CDD|165857 PLN02213, PLN02213, sinapoylglucose-malate O-sinapoyltransferase/
carboxypeptidase.
Length = 319
Score = 47.0 bits (111), Expect = 9e-06
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 160 NVIYIDNPVGRGFSFAEDYDLYSRNKTQVGLNLYIALVQFFKVFNEYQRNDFFITGETYI 219
N+I++D PVG GFS+++ + + ++V + L ++ +Y N ++ G++Y
Sbjct: 3 NIIFLDQPVGSGFSYSKTPIDKTGDISEVK-RTHEFLQKWLSRHPQYFSNPLYVVGDSYS 61
Query: 220 GQFGTSLGFNIYQNNPV-TDIKINLKGFALGNDLTDPLYMMLYSK----YLYQIGLIDD 273
G +L I Q N + + INL+G+ LGN +T YM Y Y +GLI D
Sbjct: 62 GMIVPALVQEISQGNYICCEPPINLQGYMLGNPVT---YMDFEQNFRIPYAYGMGLISD 117
>gnl|CDD|224875 COG1964, COG1964, Predicted Fe-S oxidoreductases [General function
prediction only].
Length = 475
Score = 30.4 bits (69), Expect = 1.9
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 259 MLYSKYLYQIGLIDDNGRKLFEYKEKQITDLIFQKKLGEAFDVYDELIVGTFHDKTIYNT 318
+ ++ ++ D + K++ F K EA +G FH T++
Sbjct: 355 KVLAEVAIKLKKFIDEKKAPKGLDVKKLIYNAFVKGDYEA--------LGEFHYNTLFIG 406
Query: 319 LTNFTNLYNYQV 330
+ +F + YNY V
Sbjct: 407 MMHFMDPYNYDV 418
>gnl|CDD|222284 pfam13645, YkuD_2, L,D-transpeptidase catalytic domain. This
family is related to pfam03734.
Length = 176
Score = 29.4 bits (67), Expect = 2.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 7/26 (26%)
Query: 211 FFITGETYIGQFGTSL-------GFN 229
F++TGETY G+ G SL G N
Sbjct: 94 FYLTGETYQGKHGYSLRLDGLEKGIN 119
>gnl|CDD|220253 pfam09469, Cobl, Cordon-bleu domain. The Cordon-bleu protein
domain is highly conserved among vertebrates. The
sequence contains three repeated lysine, arginine, and
proline-rich regions, the KKRAP motif. The exact
function of the protein is unknown but it is thought to
be involved in mid-brain neural tube closure. It is
expressed specifically in the node.
Length = 349
Score = 30.3 bits (68), Expect = 2.2
Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 35/122 (28%)
Query: 47 LILTDYIERGELDKAKKLSEV---KLPGFNIESYS-------------------GFFRVN 84
L+L DYI + ELD K L+++ +L +++ S GFF+ +
Sbjct: 177 LLLKDYISQEELDLTKSLNDLGIKELYAWDVNRESCRISSNLSDMTEKEKKGFLGFFQRS 236
Query: 85 STEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLGSSSMTGLFQENGPLQLNKNKKRQP 144
+ + ++A PA + L + L S G E K+R P
Sbjct: 237 KKKRDQCATA------PASPLVNKRTFTLGNSISLPYISGVGPKSE-------PKKRRAP 283
Query: 145 LP 146
P
Sbjct: 284 PP 285
>gnl|CDD|184685 PRK14453, PRK14453, chloramphenicol/florfenicol resistance protein;
Provisional.
Length = 347
Score = 29.7 bits (67), Expect = 3.1
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 258 MMLYSKYLYQIGLIDDNGRKLFEYKEKQITDLIFQKKLGE 297
+KY ++ + KL +Y+ +QIT IF++++
Sbjct: 1 KQTKTKYGKMKQILSNL--KLPDYRYEQITKAIFKQRIDN 38
>gnl|CDD|198184 cd09930, SH2_cSH2_p85_like, C-terminal Src homology 2 (cSH2) domain
found in p85. Phosphoinositide 3-kinases (PI3Ks) are
essential for cell growth, migration, and survival.
p110, the catalytic subunit, is composed of an
adaptor-binding domain, a Ras-binding domain, a C2
domain, a helical domain, and a kinase domain. The
regulatory unit is called p85 and is composed of an SH3
domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain,
a inter SH2 (iSH2) domain, and C-terminal (cSH2) domain.
There are 2 inhibitory interactions between p110alpha
and p85 of P13K: 1) p85 nSH2 domain with the C2,
helical, and kinase domains of p110alpha and 2) p85 iSH2
domain with C2 domain of p110alpha. There are 3
inhibitory interactions between p110beta and p85 of
P13K: 1) p85 nSH2 domain with the C2, helical, and
kinase domains of p110beta, 2) p85 iSH2 domain with C2
domain of p110alpha, and 3) p85 cSH2 domain with the
kinase domain of p110alpha. It is interesting to note
that p110beta is oncogenic as a wild type protein while
p110alpha lacks this ability. One explanation is the
idea that the regulation of p110beta by p85 is unique
because of the addition of inhibitory contacts from the
cSH2 domain and the loss of contacts in the iSH2 domain.
In general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 104
Score = 28.1 bits (63), Expect = 3.1
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 158 NHNVIYIDNPVGRGFSFAEDYDLYSRNKTQV 188
H VIY G+ FAE Y+LY K V
Sbjct: 52 KHCVIY---KTETGYGFAEPYNLYESLKELV 79
>gnl|CDD|153312 cd07628, BAR_Atg24p, The Bin/Amphiphysin/Rvs (BAR) domain of yeast
Sorting Nexin Atg24p. BAR domains are dimerization,
lipid binding and curvature sensing modules found in
many different proteins with diverse functions. Sorting
nexins (SNXs) are Phox homology (PX) domain containing
proteins that are involved in regulating membrane
traffic and protein sorting in the endosomal system.
SNXs differ from each other in their lipid-binding
specificity, subcellular localization and specific
function in the endocytic pathway. A subset of SNXs also
contain BAR domains. The PX-BAR structural unit
determines the specific membrane targeting of SNXs.
Atg24p is involved in membrane fusion events at the
vacuolar surface during pexophagy. BAR domains form
dimers that bind to membranes, induce membrane bending
and curvature, and may also be involved in
protein-protein interactions.
Length = 185
Score = 28.4 bits (64), Expect = 5.0
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 49 LTDYIERGELDKAKKLSEVKLPGFN---IESYSGFFRVNSTEDKK 90
L+DY+ E++ AK+ S+ FN ++ Y F R+ E K
Sbjct: 119 LSDYLLTDEVENAKETSD----AFNKEVLKEYPNFERIKKQEIKD 159
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.409
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,561,851
Number of extensions: 2207838
Number of successful extensions: 1712
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1698
Number of HSP's successfully gapped: 21
Length of query: 443
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 343
Effective length of database: 6,502,202
Effective search space: 2230255286
Effective search space used: 2230255286
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)