RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3706
(443 letters)
>1ac5_A KEX1(delta)P; carboxypeptidase, hydrolase, glycoprotein,
transmembrane; HET: NAG; 2.40A {Saccharomyces
cerevisiae} SCOP: c.69.1.5
Length = 483
Score = 223 bits (571), Expect = 4e-68
Identities = 80/352 (22%), Positives = 133/352 (37%), Gaps = 45/352 (12%)
Query: 64 LSEVKLPGFNIESYSGFFRVNST---EDKKYSSALFFWFFPAEEYPSNA--PVLLWLNAG 118
LSEV P + ++G + S E FFW F + N P+++WLN G
Sbjct: 17 LSEVPDPSNIPQMHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGG 76
Query: 119 LGSSSMTGLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAE-- 176
G SSM G E+GP ++N + K + + W ++++ID P G GFS +
Sbjct: 77 PGCSSMDGALVESGPFRVNSDGK------LYLNEGSWISKGDLLFIDQPTGTGFSVEQNK 130
Query: 177 -----DYDLYSRNKTQVGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIY 231
D + + + V + L +FK+F E ++GE+Y GQ+ I
Sbjct: 131 DEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAIL 190
Query: 232 QNN---PVTDIKINLKGFALGNDLTDPLYMML-YSKYLYQIGLIDDNGRKLFEYK----- 282
+N + +LK +GN DP L Y + + LID++
Sbjct: 191 NHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHEN 250
Query: 283 -----EKQITDLIFQKKLGEAFDVYDELIVGTFHDKTIYNTLTNFTNLYNYQVP-----I 332
TD E ++ + L+ T + N+YN+ +
Sbjct: 251 CQNLINSASTDEAAHFSYQECENILNLLLSYTRESSQKGT--ADCLNMYNFNLKDSYPSC 308
Query: 333 ADNTPNTL--MVELFNTTTFRKAVHVGNTTYD--TSVTEDVF--LKNDIMGS 378
N P + + + F+T ++H+ + D T V L N I
Sbjct: 309 GMNWPKDISFVSKFFSTPGVIDSLHLDSDKIDHWKECTNSVGTKLSNPISKP 360
>1cpy_A Serine carboxypeptidase; hydrolase (carboxypeptidase); HET: NAG;
2.60A {Saccharomyces cerevisiae} SCOP: c.69.1.5 PDB:
1wpx_A* 1ysc_A*
Length = 421
Score = 214 bits (548), Expect = 2e-65
Identities = 78/333 (23%), Positives = 123/333 (36%), Gaps = 38/333 (11%)
Query: 66 EVKLPGF-----NIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLG 120
++K P N+ Y+G+ V + FFW F + P+ PV+LWLN G G
Sbjct: 1 KIKDPKILGIDPNVTQYTGYLDVEDED-----KHFFFWTFESRNDPAKDPVILWLNGGPG 55
Query: 121 SSSMTGLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDYDL 180
SS+TGLF GP + + K W+ N VI++D PV GFS++ +
Sbjct: 56 CSSLTGLFFALGPSSIGPDLK------PIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGV 109
Query: 181 YSRNKTQVGLNLYIALVQFFKVFNEY--QRNDFFITGETYIGQFGTSLGFNIYQNNPVTD 238
N G ++Y L FF F EY + DF I G +Y G + I + D
Sbjct: 110 S--NTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHK---D 164
Query: 239 IKINLKGFALGNDLTDPLYMML-YSKYLYQIGL----IDDNGRKLFEYKEKQITDLIFQK 293
NL +GN LTDPL Y G + E ++ LI +
Sbjct: 165 RNFNLTSVLIGNGLTDPLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLI--E 222
Query: 294 KLGEAFDVYDELIVGTFHDKTIYNTLTN-FTNLYNYQVPIADNTPN----TLMVELFNTT 348
++ V+ + + + N+Y+ + + + N
Sbjct: 223 SCYDSQSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQD 282
Query: 349 TFRKAVHVGNTTY---DTSVTEDVFLKNDIMGS 378
++AV Y + + + D M
Sbjct: 283 YVKEAVGAEVDHYESCNFDINRNFLFAGDWMKP 315
>1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum}
SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A*
Length = 255
Score = 204 bits (521), Expect = 2e-63
Identities = 61/213 (28%), Positives = 108/213 (50%), Gaps = 18/213 (8%)
Query: 68 KLPGF---NIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLGSSSM 124
+LPG + + YSG+ V+ + +LF+ A E AP++LWLN G G SS+
Sbjct: 8 RLPGQPAVDFDMYSGYITVDEGAGR----SLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 63
Query: 125 T-GLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDY-DLYS 182
G +E G ++ + + W+K NV+++D+P G GFS+ D+Y+
Sbjct: 64 AYGASEELGAFRVKPRGAG-----LVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYT 118
Query: 183 RNKTQVGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQNNPVTDIKIN 242
+ + Y L ++F+ F Y+ DF+I GE+Y G + L ++++ + IN
Sbjct: 119 SGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK---NPVIN 175
Query: 243 LKGFALGNDLTDPLYMML-YSKYLYQIGLIDDN 274
LKGF +GN L D + + ++ + G++ D+
Sbjct: 176 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDD 208
>1ivy_A Human protective protein; carboxypeptidase, serine
carboxypeptidase, protective protei glycoprotein,
zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP:
c.69.1.5
Length = 452
Score = 202 bits (515), Expect = 3e-60
Identities = 70/226 (30%), Positives = 115/226 (50%), Gaps = 23/226 (10%)
Query: 61 AKKLSEVK-LPGF----NIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWL 115
A E++ LPG + YSG+ + + S L +WF +++ P N+PV+LWL
Sbjct: 1 APDQDEIQRLPGLAKQPSFRQYSGYLKSS------GSKHLHYWFVESQKDPENSPVVLWL 54
Query: 116 NAGLGSSSMTGLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFA 175
N G G SS+ GL E+GP + + +E W+ NV+Y+++P G GFS++
Sbjct: 55 NGGPGCSSLDGLLTEHGPFLVQPDGVT-----LEYNPYSWNLIANVLYLESPAGVGFSYS 109
Query: 176 EDYDLYSRNKTQVGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQNNP 235
D Y+ N T+V + + AL FF++F EY+ N F+TGE+Y G + +L + Q+
Sbjct: 110 -DDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDP- 167
Query: 236 VTDIKINLKGFALGNDLTDPLYMML-YSKYLYQIGLIDDNGRKLFE 280
+NL+G A+GN L+ + Y GL+ + +
Sbjct: 168 ----SMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQ 209
>1gxs_A P-(S)-hydroxymandelonitrIle lyase chain A; inhibitor complex,
cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum
bicolor} SCOP: c.69.1.5
Length = 270
Score = 193 bits (492), Expect = 7e-59
Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 19/213 (8%)
Query: 69 LPGF----NIESYSGFFRVNSTEDKKYSSALFFWFFPAEEY-PSNAPVLLWLNAGLGSSS 123
LPG Y G+ ++ + AL++WF A+ P+ AP++LWLN G G SS
Sbjct: 13 LPGQPNGVAFGMYGGYVTIDDNNGR----ALYYWFQEADTADPAAAPLVLWLNGGPGCSS 68
Query: 124 M-TGLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDYDLYS 182
+ G QE G +++ N + + W+K N+++ ++P G GFS++ S
Sbjct: 69 IGLGAMQELGAFRVHTN-----GESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLS 123
Query: 183 RNKTQVGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQNNPVTDIKIN 242
++ + Y LV++F+ F Y +F+I GE+ G F L +Y+N IN
Sbjct: 124 MGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRN-NSPFIN 180
Query: 243 LKGFALGNDLTDPLYMML-YSKYLYQIGLIDDN 274
+G + + LT+ M+ + + GLI D
Sbjct: 181 FQGLLVSSGLTNDHEDMIGMFESWWHHGLISDE 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 7e-07
Identities = 56/356 (15%), Positives = 103/356 (28%), Gaps = 119/356 (33%)
Query: 51 DYIERGELD-KAKKLSEVKLPGFNIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPS-- 107
D+ E GE + K + V F +++ F +D S EE
Sbjct: 8 DF-ETGEHQYQYKDILSVFEDAF-VDN----FDCKDVQDMPKS------ILSKEEIDHII 55
Query: 108 NAP-------VLLWLNAGLGSSSMTGLFQENGPLQLN--------KNKKRQPLPYVEKRK 152
+ L W + +E L++N K ++RQP +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEE--VLRINYKFLMSPIKTEQRQPSM---MTR 110
Query: 153 TYWSKNHNVIYIDNPVGRGFSFAEDYDLYSRNKTQVGLNLYIALVQFFKVFNEYQRNDFF 212
Y + + +Y DN V + Y+ ++ Q L L AL++
Sbjct: 111 MYIEQ-RDRLYNDNQV---------FAKYNVSRLQPYLKLRQALLE-------------- 146
Query: 213 ITGETYI---GQFG---TSLGFNIYQNNPVTDIKINLKGF--ALGNDLTDPLYMMLYSKY 264
+ + G G T + ++ + V K++ K F L N + + + K
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC-KMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 265 LYQI-------GLIDDNGRKLFEYKEKQITDLIFQKKLGEAF----DVYDELIVGTFHDK 313
LYQI N + + ++ L+ K +V + F
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--- 262
Query: 314 TIYNTLTNFTNLYNYQVPIADNTPNTLMVELFNTTTFRKAVHVGNTTYDTSVTEDV 369
+ + L+ TT VT+ +
Sbjct: 263 --------------------NLSCKILL-----------------TTRFKQVTDFL 281
Score = 47.9 bits (113), Expect = 5e-06
Identities = 56/359 (15%), Positives = 92/359 (25%), Gaps = 147/359 (40%)
Query: 3 LRIFLSYLVVTCAQSKNNNRYPTLPEFTDVFQNQPFASADVGSPLILT------------ 50
+ L YL + R LP +P L+
Sbjct: 304 KSLLLKYL---------DCRPQDLPR-----------EVLTTNPRRLSIIAESIRDGLAT 343
Query: 51 -DYIERGELDKAKKLSEVKLPGFNIESYSGFFRVNSTEDKKYSSALFFWFFPAEEY-PSN 108
D + DK + E L E +K L FP + P+
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLE-----------PAEYRKMFDRLSV--FPPSAHIPTI 390
Query: 109 APVLLWLNAGLGSSSMTGLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPV 168
L+W + + + + + +NK K L VEK K I I
Sbjct: 391 LLSLIWFD----------VIKSDVMVVVNKLHKYS-L--VEK----QPKES-TISI---- 428
Query: 169 GRGFSFAEDYDLYSRNKTQVG--LNLYIALVQFFKVFNEYQRNDFFITGE-TYIGQFGTS 225
+Y K ++ L+ ++V + + + +D Y
Sbjct: 429 ---------PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH--- 476
Query: 226 LGFNIYQNNPVTDIKINLKGFALGNDLTDPLYMMLYSKYLYQIGLID--DNGRKLFEYKE 283
+G +L I + R +F
Sbjct: 477 IGH-----------------------------------HLKNIEHPERMTLFRMVF---- 497
Query: 284 KQITDLIF-QKKLGEAFDVYDELIVGTFHDKTIYNTLTNFTN----LYNYQVPIADNTP 337
D F ++K+ HD T +N + N L Y+ I DN P
Sbjct: 498 ---LDFRFLEQKI--------------RHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Score = 30.2 bits (67), Expect = 1.9
Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 31/141 (21%)
Query: 6 FLSY-LVVTCAQSKNNNRYPTLPEFTDVFQNQPFASADVGSPLILTDYIERGELDKAKKL 64
+ + L KN + F VF + F + + L
Sbjct: 476 HIGHHL-------KNIEHPERMTLFRMVFLDFRF----LEQKIRHDSTAWNASGSILNTL 524
Query: 65 SEVKLPGFNIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPV--LLWLNAGLGSS 122
++K Y + N + ++ +A+ + EE + LL +
Sbjct: 525 QQLKF-------YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI------- 570
Query: 123 SMTGLFQENGPLQLNKNKKRQ 143
L E+ + +K+ Q
Sbjct: 571 ---ALMAEDEAIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 1e-06
Identities = 86/517 (16%), Positives = 147/517 (28%), Gaps = 195/517 (37%)
Query: 6 FLSYLVVTCAQSKNNNRYPTLPEFTDVFQNQPFASADVGSPLILTDYIERGELDKAKKLS 65
FL Y+ SK L F+N D+ + L K K+L
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL- 122
Query: 66 EVKLPGFNIESY-SGFFRVNSTEDKKYSSALF-------------F--------WFFPAE 103
I++Y + DKK +SALF F +F E
Sbjct: 123 --------IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF---E 171
Query: 104 E-------YPSNAPVLLWLNAGLGSSSMTGLFQENGPLQLNKNKKRQPLPYVEKRKTYWS 156
E Y L+ E L + + ++
Sbjct: 172 ELRDLYQTYHVLVGDLI--------KFSAETLSE-----LIRT--------TLDAEKVFT 210
Query: 157 KNHNVI-YIDNPVGRGFSFAEDYDLYSRNKTQVGLNLYIALVQF--FKVFNE---YQRND 210
+ N++ +++NP +DY L S + L I ++Q + V + + +
Sbjct: 211 QGLNILEWLENPSNTP---DKDY-LLS---IPISCPL-IGVIQLAHYVVTAKLLGFTPGE 262
Query: 211 FF--ITGETYIGQ----------------FGTS----------LGFNIYQNNPVTDIKIN 242
+ G T Q F S +G Y+ P T + +
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 243 LKGFALGNDLTDPLYMMLYS--------KYLYQ------------IGLIDDNGRKLF--- 279
+ +L N+ P M+ S Y+ + I L+ NG K
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV--NGAKNLVVS 380
Query: 280 --------------EYKEKQITD---LIF-QKKL--GEAFDVYDELIVGT-FHDKTIYNT 318
+ K D + F ++KL F L V + FH +
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-----LPVASPFH--SHL-- 431
Query: 319 LTN-----FTNLYNYQVPIADNTPNTLMVELFNTTT---FRKAVHVGNTTYDTSVTEDVF 370
L +L V + + +++T R S++E
Sbjct: 432 LVPASDLINKDLVKNNVSFN---AKDIQIPVYDTFDGSDLRV--------LSGSISER-- 478
Query: 371 LKNDIMGSRQFPC---------ITGLLSFMKQGPGVS 398
+ + I+ + P T +L F GPG +
Sbjct: 479 IVDCII---RLPVKWETTTQFKATHILDF---GPGGA 509
Score = 47.7 bits (113), Expect = 6e-06
Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 40/138 (28%)
Query: 189 GLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQNNPVTDIKINLKGFAL 248
G++LY V+N R D +TY G S+ +I NNP ++ I+ G
Sbjct: 1632 GMDLYKTSKAAQDVWN---RADNH-FKDTY----GFSI-LDIVINNP-VNLTIHFGG-EK 1680
Query: 249 GNDLTDPLYM-MLYSKYLYQIGLIDDN--GRKLFEYKEKQITDLIFQKKLGEAFDVYDEL 305
G + + Y M++ + D K+F+ + T F+ E L
Sbjct: 1681 GKRIRE-NYSAMIFETIV------DGKLKTEKIFKEINEHSTSYTFR---SEK----GLL 1726
Query: 306 IVGTFHDKTIYNTLTNFT 323
+ T FT
Sbjct: 1727 ------------SATQFT 1732
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.020
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 9/32 (28%)
Query: 89 KKYSSALFFWFFPAEEY-PSNAPVLLWLNAGL 119
KK ++L + Y +AP L + A +
Sbjct: 23 KKLQASL-------KLYADDSAPALA-IKATM 46
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.40.4.14
Length = 95
Score = 29.3 bits (66), Expect = 0.70
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 6/26 (23%)
Query: 160 NVIYIDNP------VGRGFSFAEDYD 179
+VI ID +GR F+ A
Sbjct: 67 DVITIDKATGKISKLGRSFTRARSGP 92
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A
{Mycobacterium tuberculosis}
Length = 359
Score = 30.6 bits (70), Expect = 0.92
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 161 VIYIDNPVGRGFSFAEDYDLYSRNKTQVGLNL 192
V+ + P G +ED DL R K V L++
Sbjct: 35 VVRVRRPGGLTMP-SEDRDLLHRGKRIVDLDV 65
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 29.0 bits (66), Expect = 3.3
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 266 YQIGLIDDNGRKLFEYKEKQITDLI 290
++GL+ + KL + E++I
Sbjct: 480 RELGLLSEEQYKLVKELEREIEKWK 504
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 29.0 bits (66), Expect = 3.8
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 266 YQIGLIDDNGRKLFEYKEKQITDLI 290
Y L+ + E K++ +
Sbjct: 469 YDCNLVSSDDLHRTESIIKRVQHCL 493
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA;
tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 28.6 bits (65), Expect = 4.6
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 266 YQIGLIDDNGRKLFEYKEKQITDLI 290
++GL+DD F K + I
Sbjct: 475 RELGLVDDERWARFNEKLENIERER 499
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger,
transferase, viral protein; HET: SAM; 2.00A {Sars
coronavirus}
Length = 344
Score = 28.2 bits (62), Expect = 6.2
Identities = 13/72 (18%), Positives = 24/72 (33%)
Query: 163 YIDNPVGRGFSFAEDYDLYSRNKTQVGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQF 222
+I + G S A +S N L + + F ++ F+ G Y+G+
Sbjct: 202 FIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNVNASSSEAFLIGANYLGKP 261
Query: 223 GTSLGFNIYQNN 234
+ N
Sbjct: 262 KEQIDGYTMHAN 273
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon,
glycosyl transferase, rossmann F sulphur SAD,
transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Length = 249
Score = 27.7 bits (61), Expect = 7.0
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 150 KRKTYWSKNHNVIYIDNPVGRGFSFAEDY 178
+R + + DN G F +
Sbjct: 38 ERFGFTPDKAEFLAADNREGNQFHGFSWH 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.409
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,579,164
Number of extensions: 390038
Number of successful extensions: 696
Number of sequences better than 10.0: 1
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 24
Length of query: 443
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 346
Effective length of database: 3,993,456
Effective search space: 1381735776
Effective search space used: 1381735776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.0 bits)