RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3706
(443 letters)
>d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast
(Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]}
Length = 483
Score = 171 bits (433), Expect = 1e-48
Identities = 79/350 (22%), Positives = 129/350 (36%), Gaps = 41/350 (11%)
Query: 64 LSEVKLPGFNIESYSGFFRVNST---EDKKYSSALFFWFFPAEEYPSNA--PVLLWLNAG 118
LSEV P + ++G + S E FFW F + N P+++WLN G
Sbjct: 17 LSEVPDPSNIPQMHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGG 76
Query: 119 LGSSSMTGLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAE-- 176
G SSM G E+GP ++N + K W ++++ID P G GFS +
Sbjct: 77 PGCSSMDGALVESGPFRVNSDGKLYLNEG------SWISKGDLLFIDQPTGTGFSVEQNK 130
Query: 177 -----DYDLYSRNKTQVGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIY 231
D + + + V + L +FK+F E ++GE+Y GQ+ I
Sbjct: 131 DEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAIL 190
Query: 232 QNNPVTDIK---INLKGFALGNDLTDPLYMML-YSKYLYQIGLIDDNGRKLFEYKE--KQ 285
+N + I +LK +GN DP L Y + + LID++ +
Sbjct: 191 NHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHEN 250
Query: 286 ITDLIFQKKLGEA-----------FDVYDELIVGTFHDKTIYNTLTNFTNLYNYQVPIAD 334
+LI EA ++ + T NL +
Sbjct: 251 CQNLINSASTDEAAHFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCGM 310
Query: 335 NTPNTL--MVELFNTTTFRKAVHVGNTT--YDTSVTEDVF--LKNDIMGS 378
N P + + + F+T ++H+ + + T V L N I
Sbjct: 311 NWPKDISFVSKFFSTPGVIDSLHLDSDKIDHWKECTNSVGTKLSNPISKP 360
>d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 452
Score = 167 bits (423), Expect = 1e-47
Identities = 86/335 (25%), Positives = 138/335 (41%), Gaps = 32/335 (9%)
Query: 69 LPGF----NIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLGSSSM 124
LPG + YSG+ + + S L +WF +++ P N+PV+LWLN G G SS+
Sbjct: 10 LPGLAKQPSFRQYSGYLKSSG------SKHLHYWFVESQKDPENSPVVLWLNGGPGCSSL 63
Query: 125 TGLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDYDLYSRN 184
GL E+GP + + +E W+ NV+Y+++P G GFS+++D Y+ N
Sbjct: 64 DGLLTEHGPFLVQPDGVT-----LEYNPYSWNLIANVLYLESPAGVGFSYSDD-KFYATN 117
Query: 185 KTQVGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQNNPVTDIKINLK 244
T+V + + AL FF++F EY+ N F+TGE+Y G + +L + Q+ +NL+
Sbjct: 118 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDP-----SMNLQ 172
Query: 245 GFALGNDLTDPLYMML-YSKYLYQIGLIDDNGRKLFEYKEKQITDLIF-QKKLGEAFDVY 302
G A+GN L+ + Y GL+ + + F K E
Sbjct: 173 GLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNL 232
Query: 303 DELIVGTFHDKTIYNTLTNFTNLYNYQVPIADNTPNTLMVELFNTTTFRKAVHVGNTTYD 362
E+ + + N+ N NLY P A P+ E
Sbjct: 233 QEV------ARIVGNSGLNIYNLYA---PCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLK 283
Query: 363 TSVTEDVFLKNDIMGSRQFPCITGLLSFMKQGPGV 397
+ + D + T S P V
Sbjct: 284 RMWHQALLRSGDKVRMDPPCTNTTAASTYLNNPYV 318
>g1gxs.1 c.69.1.5 (A:,B:) Hydroxynitrile lyase {Sorghum (Sorghum
bicolor) [TaxId: 4558]}
Length = 425
Score = 163 bits (414), Expect = 2e-46
Identities = 73/341 (21%), Positives = 129/341 (37%), Gaps = 22/341 (6%)
Query: 69 LPGF----NIESYSGFFRVNSTEDKKYSSALFFWFFPAEEY-PSNAPVLLWLNAGLGSSS 123
LPG Y G+ + D AL++WF A+ P+ AP++LWLN G G SS
Sbjct: 10 LPGQPNGVAFGMYGGYVTI----DDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGCSS 65
Query: 124 M-TGLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDYDLYS 182
+ G QE G +++ N + + W+K N+++ ++P G GFS++ S
Sbjct: 66 IGLGAMQELGAFRVHTNGESL-----LLNEYAWNKAANILFAESPAGVGFSYSNTSSDLS 120
Query: 183 RNKTQVGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQNNPVTDIKIN 242
++ + Y LV++F+ F Y +F+I GE+ +Y+N IN
Sbjct: 121 MGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGESGHFIPQL--SQVVYRNRN-NSPFIN 177
Query: 243 LKGFALGNDLTDPLYMML-YSKYLYQIGLIDDNGRKLFEYKEKQITDLIFQKKLGEAFDV 301
+G + + LT+ M+ + + GLI D R + + + E ++
Sbjct: 178 FQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTEVWNK 237
Query: 302 YDELIVGTFHDKTIYNTLTNFTNLYNYQ--VPIADNTPNTLMVELFNTTTFRKAVHVG-N 358
T + Y + +P D + N + A+H +
Sbjct: 238 ALAEQGNINPYTIYTPTCDREPSPYQRRFWLPPYDPCAVFNSINYLNLPEVQTALHANVS 297
Query: 359 TTYDTSVTEDVFLKNDIMGSRQFPCITGLLSFMKQGPGVSV 399
+ T D G + ++ G V V
Sbjct: 298 GIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQAGLRVWV 338
>g1wht.1 c.69.1.5 (A:,B:) Serine carboxypeptidase II {Wheat
(Triticum vulgare) [TaxId: 4565]}
Length = 409
Score = 159 bits (404), Expect = 4e-45
Identities = 73/297 (24%), Positives = 129/297 (43%), Gaps = 28/297 (9%)
Query: 69 LPGF---NIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLGSSSMT 125
LPG + + YSG+ V D+ +LF+ A E AP++LWLN G G SS+
Sbjct: 10 LPGQPAVDFDMYSGYITV----DEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 65
Query: 126 -GLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDY-DLYSR 183
G +E G ++ + + W+K NV+++D+P G GFS+ D+Y+
Sbjct: 66 YGASEELGAFRVKPRG-----AGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 120
Query: 184 NKTQVGLNLYIALVQFFKVFNEYQRNDFFITGETYIGQFGTSLGFNIYQNNPVTDIKINL 243
+ + Y L ++F+ F Y+ DF+I GE+Y G + L ++++ + INL
Sbjct: 121 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK---NPVINL 177
Query: 244 KGFALGNDLTDPLYMML-YSKYLYQIGLIDDNGRKLFEYKEKQITDLIFQKKLGEAFDVY 302
KGF +GN L D + + ++ + G++ D+ + + + + A DV
Sbjct: 178 KGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVA 237
Query: 303 DELIVGTFHDKTIYNTLTNFTNLYNYQVPIADNTPNTLMVELFNTTTFRKAVHVGNT 359
G ++Y + N + D +N + A+H T
Sbjct: 238 TA-EQGNIDMYSLYTPVCNISY---------DPCTERYSTAYYNRRDVQMALHANVT 284
>d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 421
Score = 157 bits (397), Expect = 4e-44
Identities = 88/352 (25%), Positives = 132/352 (37%), Gaps = 38/352 (10%)
Query: 66 EVKLPGF-----NIESYSGFFRVNSTEDKKYSSALFFWFFPAEEYPSNAPVLLWLNAGLG 120
++K P N+ Y+G+ V + FFW F + P+ PV+LWLN G G
Sbjct: 1 KIKDPKILGIDPNVTQYTGYLDVEDED-----KHFFFWTFESRNDPAKDPVILWLNGGPG 55
Query: 121 SSSMTGLFQENGPLQLNKNKKRQPLPYVEKRKTYWSKNHNVIYIDNPVGRGFSFAEDYDL 180
SS+TGLF E GP + + W+ N VI++D PV GFS++ +
Sbjct: 56 CSSLTGLFFELGPSSIGPD------LKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGV 109
Query: 181 YSRNKTQVGLNLYIALVQFFKVFNEY--QRNDFFITGETYIGQFGTSLGFNIYQNNPVTD 238
N G ++Y L FF F EY + DF I GE+Y G + I + D
Sbjct: 110 S--NTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHK---D 164
Query: 239 IKINLKGFALGNDLTDPLYMMLYSKYLYQIGLIDDNGRKLFEYKEKQITDLIFQKKLGEA 298
NL +GN LTDPL Y + + + +E + ++ LG
Sbjct: 165 RNFNLTSVLIGNGLTDPLTQY---NYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLI 221
Query: 299 FDVYDELIVGTFHDKTIYNTLTNFT-------NLYNYQVPIADNTPN----TLMVELFNT 347
YD V + TIY N+Y+ + + + N
Sbjct: 222 ESCYDSQSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQ 281
Query: 348 TTFRKAVHVGNTTYDTSVTEDVFLKNDIMGSRQFPCITGLLSFMKQGPGVSV 399
++AV Y S D+ G P T + + Q + V
Sbjct: 282 DYVKEAVGAEVDHY-ESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILV 332
>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 184
Score = 25.6 bits (56), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 231 YQNNPVTDIKINLKGFALGN 250
YQN+ +T +KI+ FA G
Sbjct: 163 YQNDKITQLKIDNNPFAKGF 182
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.409
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,618,366
Number of extensions: 76367
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 9
Length of query: 443
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,199,356
Effective search space: 425771380
Effective search space used: 425771380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)