BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3708
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 120/198 (60%), Gaps = 21/198 (10%)
Query: 2 KSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTFR 61
K++F+I + + +ISNMPL +S ++ G + D F +V MSTYLVAFIISDF
Sbjct: 155 KASFSIKIRREPRHLAISNMPLVKS--VTVAEGLIEDHFDVTVKMSTYLVAFIISDF--- 209
Query: 62 QSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPS 121
+ S S V+ +A D I+Q D+A +A L F+E YF+I YPLPKQD+ AIP
Sbjct: 210 -ESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPD 268
Query: 122 L---------------SALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLW 166
SALLFD +SS ++ I T+AHELAHQWFGNLVTM+WW DLW
Sbjct: 269 FQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLW 328
Query: 167 LNEGFATYMAAQALNDVH 184
LNEGFA +M +++ H
Sbjct: 329 LNEGFAKFMEFVSVSVTH 346
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 40/52 (76%)
Query: 189 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
+Q D+A +A L F+E YF+I YPLPKQD+ AIPDF +GAMENWGL TYR
Sbjct: 232 NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYR 283
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 164 bits (414), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 120/198 (60%), Gaps = 21/198 (10%)
Query: 2 KSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTFR 61
K++F+I + + +ISNMPL +S ++ G + D F +V MSTYLVAFIISDF
Sbjct: 206 KASFSIKIRREPRHLAISNMPLVKS--VTVAEGLIEDHFDVTVKMSTYLVAFIISDF--- 260
Query: 62 QSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPS 121
+ S S V+ +A D I+Q D+A +A L F+E YF+I YPLPKQD+ AIP
Sbjct: 261 -ESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPD 319
Query: 122 L---------------SALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLW 166
SALLFD +SS ++ I T+AHELAHQWFGNLVTM+WW DLW
Sbjct: 320 FQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLW 379
Query: 167 LNEGFATYMAAQALNDVH 184
LNEGFA +M +++ H
Sbjct: 380 LNEGFAKFMEFVSVSVTH 397
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 40/52 (76%)
Query: 189 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
+Q D+A +A L F+E YF+I YPLPKQD+ AIPDF +GAMENWGL TYR
Sbjct: 283 NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYR 334
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 120/198 (60%), Gaps = 21/198 (10%)
Query: 2 KSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTFR 61
K++F+I + + +ISNMPL +S ++ G + D F +V MSTYLVAFIISDF
Sbjct: 164 KASFSIKIRREPRHLAISNMPLVKS--VTVAEGLIEDHFDVTVKMSTYLVAFIISDF--- 218
Query: 62 QSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPS 121
+ S S V+ +A D I+Q D+A +A L F+E YF+I YPLPKQD+ AIP
Sbjct: 219 -ESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPD 277
Query: 122 L---------------SALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLW 166
SALLFD +SS ++ I T+AHELAHQWFGNLVTM+WW DLW
Sbjct: 278 FQSGAMENWGLTTYRESALLFDAEKSSASSKLDITMTVAHELAHQWFGNLVTMEWWNDLW 337
Query: 167 LNEGFATYMAAQALNDVH 184
LNEGFA +M +++ H
Sbjct: 338 LNEGFAKFMEFVSVSVTH 355
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 40/52 (76%)
Query: 189 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
+Q D+A +A L F+E YF+I YPLPKQD+ AIPDF +GAMENWGL TYR
Sbjct: 241 NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYR 292
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 111/193 (57%), Gaps = 22/193 (11%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSED-ISTKPGWVLDVFQKSVPMSTYLVAFIISDFT 59
MK+TF I+L HP LT++SNMP + S ++ P W + F+ + MSTYL+A+I+S+F
Sbjct: 206 MKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQ 265
Query: 60 FRQSNTSNPDLSRVQFRTWARRDVIDQVD--FAAEAGPEFLNFFERYFNIRYPLPKQDMV 117
N V R WAR + I + +A LNFF ++N YPLPK D +
Sbjct: 266 SVNETAQN----GVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHYNTSYPLPKSDQI 321
Query: 118 AIPSLSA---------------LLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWW 162
A+P +A LLFD SSI N+ + IAHELAHQWFGNLVT+ WW
Sbjct: 322 ALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWW 381
Query: 163 TDLWLNEGFATYM 175
DLWLNEGFA+Y+
Sbjct: 382 NDLWLNEGFASYV 394
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 198 GPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
GP LNFF ++N YPLPK D +A+PDF+AGAMENWGL+TYR
Sbjct: 299 GP-ILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYR 340
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 112/193 (58%), Gaps = 22/193 (11%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSED-ISTKPGWVLDVFQKSVPMSTYLVAFIISDFT 59
MK+TF I+L HP LT++SNMP + S ++ P W + F+ + MSTYL+A+I+S+F
Sbjct: 162 MKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQ 221
Query: 60 FRQSNTSNPDLSRVQFRTWARRDVIDQVD--FAAEAGPEFLNFFERYFNIRYPLPKQDMV 117
N L R+ WAR + I + +A LNFF ++N YPLPK D +
Sbjct: 222 SVNETAQNGVLIRI----WARPNAIAEGHGMYALNVTGPILNFFANHYNTSYPLPKSDQI 277
Query: 118 AIPSLSA---------------LLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWW 162
A+P +A LLFD SSI N+ + IAHELAHQWFGNLVT+ WW
Sbjct: 278 ALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWW 337
Query: 163 TDLWLNEGFATYM 175
DLWLNEGFA+Y+
Sbjct: 338 NDLWLNEGFASYV 350
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 198 GPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
GP LNFF ++N YPLPK D +A+PDF+AGAMENWGL+TYR
Sbjct: 255 GP-ILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYR 296
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 112/193 (58%), Gaps = 22/193 (11%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSED-ISTKPGWVLDVFQKSVPMSTYLVAFIISDFT 59
MK+TF I+L HP LT++SNMP + S ++ P W + F+ + MSTYL+A+I+S+F
Sbjct: 163 MKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQ 222
Query: 60 FRQSNTSNPDLSRVQFRTWARRDVIDQVD--FAAEAGPEFLNFFERYFNIRYPLPKQDMV 117
N L R+ WAR + I + +A LNFF ++N YPLPK D +
Sbjct: 223 SVNETAQNGVLIRI----WARPNAIAEGHGMYALNVTGPILNFFANHYNTSYPLPKSDQI 278
Query: 118 AIPSLSA---------------LLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWW 162
A+P +A LLFD SSI N+ + IAHELAHQWFGNLVT+ WW
Sbjct: 279 ALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWW 338
Query: 163 TDLWLNEGFATYM 175
DLWLNEGFA+Y+
Sbjct: 339 NDLWLNEGFASYV 351
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 198 GPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
GP LNFF ++N YPLPK D +A+PDF+AGAMENWGL+TYR
Sbjct: 256 GP-ILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYR 297
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 112/193 (58%), Gaps = 22/193 (11%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSED-ISTKPGWVLDVFQKSVPMSTYLVAFIISDFT 59
MK+TF I+L HP LT++SNMP + S ++ P W + F+ + MSTYL+A+I+S+F
Sbjct: 162 MKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQ 221
Query: 60 FRQSNTSNPDLSRVQFRTWARRDVIDQVD--FAAEAGPEFLNFFERYFNIRYPLPKQDMV 117
N L R+ WAR + I + +A LNFF ++N YPLPK D +
Sbjct: 222 SVNETAQNGVLIRI----WARPNAIAEGHGMYALNVTGPILNFFANHYNTSYPLPKSDQI 277
Query: 118 AIPSLSA---------------LLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWW 162
A+P +A LLFD SSI N+ + IAH+LAHQWFGNLVT+ WW
Sbjct: 278 ALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHQLAHQWFGNLVTLAWW 337
Query: 163 TDLWLNEGFATYM 175
DLWLNEGFA+Y+
Sbjct: 338 NDLWLNEGFASYV 350
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 198 GPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
GP LNFF ++N YPLPK D +A+PDF+AGAMENWGL+TYR
Sbjct: 255 GP-ILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYR 296
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 111/193 (57%), Gaps = 22/193 (11%)
Query: 1 MKSTFTISLGHPKKLTSISNM-PLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFT 59
MK+ F I+L HPK LT++SNM P S + P W + F + MSTYL+AFI+S+F
Sbjct: 165 MKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVTEFHTTPKMSTYLLAFIVSEFD 224
Query: 60 FRQSNTSNPDLSRVQFRTWARRDVI--DQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMV 117
+ + SN L R+ WAR I D+A LNFF +++ YPLPK D +
Sbjct: 225 YVEKQASNGVLIRI----WARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQI 280
Query: 118 AIPSLSA---------------LLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWW 162
+P +A LLFD + SS N+ + IAHELAHQWFGNLVT++WW
Sbjct: 281 GLPDFNAGAMENWGLVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWW 340
Query: 163 TDLWLNEGFATYM 175
DLWLNEGFA+Y+
Sbjct: 341 NDLWLNEGFASYV 353
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 174 YMAAQALNDVHI--------LFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPD 225
Y+ QA N V I + D+A LNFF +++ YPLPK D + +PD
Sbjct: 225 YVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPD 284
Query: 226 FSAGAMENWGLITYR 240
F+AGAMENWGL+TYR
Sbjct: 285 FNAGAMENWGLVTYR 299
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 115/195 (58%), Gaps = 21/195 (10%)
Query: 2 KSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTFR 61
K+ F+I + + ++SNMP + + I + G + D F+ +V MSTYLVA+I+ DF
Sbjct: 217 KANFSIKIRRESRHIALSNMP--KVKTIELEGGLLEDHFETTVKMSTYLVAYIVCDFHSL 274
Query: 62 QSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPS 121
TS S V+ +A D +Q +A +A + L+F+E+YF+I YPL K D++AIP
Sbjct: 275 SGFTS----SGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPD 330
Query: 122 L---------------SALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLW 166
++LLFD SS ++ + IAHELAHQWFGNLVTM+WW D+W
Sbjct: 331 FAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIW 390
Query: 167 LNEGFATYMAAQALN 181
LNEGFA YM A+N
Sbjct: 391 LNEGFAKYMELIAVN 405
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 42/52 (80%)
Query: 189 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
+Q +A +A + L+F+E+YF+I YPL K D++AIPDF+ GAMENWGLITYR
Sbjct: 294 NQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYR 345
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 114/195 (58%), Gaps = 21/195 (10%)
Query: 2 KSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTFR 61
K+ F+I + + ++SNMP + + I + G + D F+ +V MSTYLVA+I+ DF
Sbjct: 217 KANFSIKIRRESRHIALSNMP--KVKTIELEGGLLEDHFETTVKMSTYLVAYIVCDFHSL 274
Query: 62 QSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPS 121
TS S V+ +A D +Q +A +A + L+F+E+YF+I YPL K D++AIP
Sbjct: 275 SGFTS----SGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPD 330
Query: 122 L---------------SALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLW 166
++LLFD SS ++ + IAHELAHQWFGNLVTM+WW D+W
Sbjct: 331 FAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIW 390
Query: 167 LNEGFATYMAAQALN 181
L EGFA YM A+N
Sbjct: 391 LKEGFAKYMELIAVN 405
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 42/52 (80%)
Query: 189 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
+Q +A +A + L+F+E+YF+I YPL K D++AIPDF+ GAMENWGLITYR
Sbjct: 294 NQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYR 345
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 102/194 (52%), Gaps = 25/194 (12%)
Query: 2 KSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTFR 61
K+ F I++ K +ISNMP +R E K V++ FQ + MSTYL+ I F +
Sbjct: 118 KAVFAITVVIDKDYDAISNMPPKRIEVSERK---VVE-FQDTPRMSTYLLYVGIGKFRYE 173
Query: 62 QSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPS 121
+ DL + + +D + E F+E YF I Y LPK ++++P
Sbjct: 174 YEKYRDIDLILASLKDIRSKYPLDMARKSVE-------FYENYFGIPYALPKMHLISVPE 226
Query: 122 LSA--------LLFDDV------RSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWL 167
A + F ++ S++ + + AN IAHE+AHQWFG+LVTMKWW DLWL
Sbjct: 227 FGAGAMENWGAITFREIYMDIAENSAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWL 286
Query: 168 NEGFATYMAAQALN 181
NE FAT+M+ + ++
Sbjct: 287 NESFATFMSYKTMD 300
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 186 LFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
L D + + + + + F+E YF I Y LPK ++++P+F AGAMENWG IT+R
Sbjct: 187 LKDIRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMENWGAITFR 241
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 101/194 (52%), Gaps = 25/194 (12%)
Query: 2 KSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTFR 61
K+ F I++ K +ISNMP +R E K V++ FQ + MSTYL+ I F +
Sbjct: 118 KAVFAITVVIDKDYDAISNMPPKRIEVSERK---VVE-FQDTPRMSTYLLYVGIGKFRYE 173
Query: 62 QSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPS 121
+ DL + + +D + E F+E YF I Y LPK ++++P
Sbjct: 174 YEKYRDIDLILASLKDIRSKYPLDMARKSVE-------FYENYFGIPYALPKMHLISVPE 226
Query: 122 LSA--------LLFDDV------RSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWL 167
A + F ++ S++ + + A IAHE+AHQWFG+LVTMKWW DLWL
Sbjct: 227 FGAGAMENWGAITFREIYMDIAENSAVTVKRNSATVIAHEIAHQWFGDLVTMKWWNDLWL 286
Query: 168 NEGFATYMAAQALN 181
NE FAT+M+ + ++
Sbjct: 287 NESFATFMSYKTMD 300
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 186 LFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
L D + + + + + F+E YF I Y LPK ++++P+F AGAMENWG IT+R
Sbjct: 187 LKDIRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMENWGAITFR 241
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTF 60
+K T+T + PK+L ++ + + P + F + VP+ YL+A ++
Sbjct: 152 VKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALES 211
Query: 61 RQSNTSNPDLSRVQFRT--WARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVA 118
RQ + RT W+ ++ +++ + L E Y + D++
Sbjct: 212 RQ----------IGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-LGGPYVWGQYDLLV 260
Query: 119 IPSL-------SALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGF 171
+P + L + + + S++N IAHE++H W GNLVT K W WLNEG
Sbjct: 261 LPPSFPYGGMENPCLTFVTPTLLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGH 320
Query: 172 ATYM 175
Y+
Sbjct: 321 TVYL 324
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTF 60
+K T+T + PK+L ++ + + P + F + VP+ YL+A ++
Sbjct: 152 VKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALES 211
Query: 61 RQSNTSNPDLSRVQFRT--WARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVA 118
RQ + RT W+ ++ +++ + L E Y + D++
Sbjct: 212 RQ----------IGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-LGGPYVWGQYDLLV 260
Query: 119 IPSL-------SALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGF 171
+P + L + + + S++N IAHE++H W GNLVT K W WLNEG
Sbjct: 261 LPPSFPYGGMENPCLTFVTPTLLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGH 320
Query: 172 ATYM 175
Y+
Sbjct: 321 TVYL 324
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTF 60
+K T+T + PK+L ++ + + P + F + VP+ YL+A ++
Sbjct: 153 VKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALES 212
Query: 61 RQSNTSNPDLSRVQFRT--WARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVA 118
RQ + RT W+ ++ +++ + L E Y + D++
Sbjct: 213 RQ----------IGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-LGGPYVWGQYDLLV 261
Query: 119 IPS-------LSALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGF 171
+P + L + + + S++N IAHE++H W GNLVT K W WLNEG
Sbjct: 262 LPPSFPYGGMQNPCLTFVTPTLLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGH 321
Query: 172 ATYM 175
Y+
Sbjct: 322 TVYL 325
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTF 60
+K T+T + PK+L ++ + + P + F + VP+ YL+A ++
Sbjct: 158 VKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALES 217
Query: 61 RQSNTSNPDLSRVQFRT--WARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVA 118
RQ + RT W+ ++ +++ + L E Y + D++
Sbjct: 218 RQ----------IGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-LGGPYVWGQYDLLV 266
Query: 119 IPSL-------SALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGF 171
+P + L + + + S++N IAHE++H W GNLVT K W WLNEG
Sbjct: 267 LPPSFPYGGMENPCLTFVTPTLLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGH 326
Query: 172 ATYM 175
Y+
Sbjct: 327 TVYL 330
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTF 60
+K T+T + PK+L ++ + + P + F + VP+ YL+A ++
Sbjct: 152 VKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALES 211
Query: 61 RQSNTSNPDLSRVQFRT--WARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVA 118
RQ + RT W+ ++ +++ + L E Y + D++
Sbjct: 212 RQ----------IGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-LGGPYVWGQYDLLV 260
Query: 119 IPSL-------SALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGF 171
+P + L + + + S++N IAHE++H W GNLVT K W WLNEG
Sbjct: 261 LPPSFPYGGMENPCLTFVTPTLLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGH 320
Query: 172 ATYM 175
Y+
Sbjct: 321 TVYL 324
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTF 60
+K T+T + PK+L ++ + + P + F + VP+ YL+A ++
Sbjct: 153 VKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALES 212
Query: 61 RQSNTSNPDLSRVQFRT--WARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVA 118
RQ + RT W+ ++ +++ + L E Y + D++
Sbjct: 213 RQ----------IGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-LGGPYVWGQYDLLV 261
Query: 119 IPSL-------SALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGF 171
+P + L + + + S++N IAHE++H W GNLVT K W WLNEG
Sbjct: 262 LPPSFPYGGMENPCLTFVTPTLLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGH 321
Query: 172 ATYM 175
Y+
Sbjct: 322 TVYL 325
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTF 60
+K T+T + PK+L ++ + + P + F + VP+ YL+A ++
Sbjct: 150 VKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALES 209
Query: 61 RQSNTSNPDLSRVQFRT--WARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVA 118
RQ + RT W+ ++ +++ + L E Y + D++
Sbjct: 210 RQ----------IGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-LGGPYVWGQYDLLV 258
Query: 119 IPSL-------SALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGF 171
+P + L + + + S++N IAHE++H W GNLVT K W WLNEG
Sbjct: 259 LPPSFPYGGMENPCLTFVTPTLLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGH 318
Query: 172 ATYM 175
Y+
Sbjct: 319 TVYL 322
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTF 60
+K T+T + PK+L ++ + + P + F + VP+ YL+A ++
Sbjct: 158 VKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALES 217
Query: 61 RQSNTSNPDLSRVQFRT--WARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVA 118
RQ + RT W+ ++ +++ + L E Y + D++
Sbjct: 218 RQ----------IGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-LGGPYVWGQYDLLV 266
Query: 119 IPSL-------SALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGF 171
+P + L + + + S++N IAH+++H W GNLVT K W WLNEG
Sbjct: 267 LPPSFPYGGMENPCLTFVTPTLLAGDKSLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGH 326
Query: 172 ATYM 175
Y+
Sbjct: 327 TVYL 330
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 134 IHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDV 183
+ + S+ N IAHELAH W GNLVT + W DLWLNEGF +Y+ + + V
Sbjct: 288 VAGDKSLVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAV 337
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 134 IHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDVH 184
I ++ S + IAHELAH W GNLVT W WLNEG+ Y+ + + +H
Sbjct: 289 IAHDRSNIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIH 339
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 135 HNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDVH 184
H+ +I + IAHELAH W GNLVT W WLNEG+ Y+ + + +H
Sbjct: 291 HDRSNI-DVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIH 339
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 71 SRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPSLSALLFDDV 130
+V+ ++ + ++ +A E + + F E YF + Y L + ++VA+ + ++
Sbjct: 212 KKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENK 271
Query: 131 RSSIHNEYS---------------IANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATY 174
+I N S I + HE HQ+ GN VT++ W L L EG +
Sbjct: 272 GLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVH 330
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 189 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGL 236
S++ +A E + + F E YF + Y L + ++VA+ DF+ GAMEN GL
Sbjct: 226 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGL 273
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 71 SRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPSLSALLFDDV 130
+V+ ++ + ++ +A E + + F E YF + Y L + ++VA+ + ++
Sbjct: 212 KKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENK 271
Query: 131 RSSIHNEYS---------------IANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATY 174
+I N S I + HE HQ+ GN VT++ W L L EG +
Sbjct: 272 GLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVH 330
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 189 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGL 236
S++ +A E + + F E YF + Y L + ++VA+ DF+ GAMEN GL
Sbjct: 226 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGL 273
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 71 SRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPSLSALLFDDV 130
+V+ ++ + ++ +A E + + F E YF + Y L + ++VA+ + ++
Sbjct: 211 KKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENK 270
Query: 131 RSSIHNEYS---------------IANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATY 174
+I N S I + HE HQ+ GN VT++ W L L EG +
Sbjct: 271 GLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVH 329
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 189 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGL 236
S++ +A E + + F E YF + Y L + ++VA+ DF+ GAMEN GL
Sbjct: 225 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGL 272
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 71 SRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPSLSALLFDDV 130
+V+ ++ + ++ +A E + + F E YF + Y L + ++VA+ + ++
Sbjct: 211 KKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENK 270
Query: 131 RSSIHNEYS---------------IANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATY 174
+I N S I + HE HQ+ GN VT++ W L L EG +
Sbjct: 271 GLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVH 329
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 189 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGL 236
S++ +A E + + F E YF + Y L + ++VA+ DF+ GAMEN GL
Sbjct: 225 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGL 272
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 24/183 (13%)
Query: 41 QKSVPMSTYLVAFIISDFTFRQSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNF 100
Q P YL A + DF + + V + R +D+ +A + + +
Sbjct: 198 QDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKW 257
Query: 101 FERYFNIRYPLPKQDMVAIPSLSALLFDDVRSSIHN-EYSIANT--------------IA 145
E F + Y L +VA+ + ++ +I N +Y +A T I
Sbjct: 258 DEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIG 317
Query: 146 HELAHQWFGNLVTMKWWTDLWLNEG--------FATYMAAQALNDV-HILFDSQVDFAAE 196
HE H W GN VT + W L L EG F++ + ++A+N + ++ + FA +
Sbjct: 318 HEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQFAED 377
Query: 197 AGP 199
A P
Sbjct: 378 ASP 380
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 206 ERYFNIRYPLPKQDMVAIPDFSAGAMENWGL 236
E F + Y L +VA+ F+ GAMEN GL
Sbjct: 259 EERFGLEYDLDIYMIVAVDFFNMGAMENKGL 289
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 24/183 (13%)
Query: 41 QKSVPMSTYLVAFIISDFTFRQSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNF 100
Q P YL A + DF + + V + R +D+ +A + + +
Sbjct: 198 QDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKW 257
Query: 101 FERYFNIRYPLPKQDMVAIPSLSALLFDDVRSSIHN-EYSIANT--------------IA 145
E F + Y L +VA+ + ++ +I N +Y +A T I
Sbjct: 258 DEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIG 317
Query: 146 HELAHQWFGNLVTMKWWTDLWLNEG--------FATYMAAQALNDV-HILFDSQVDFAAE 196
HE H W GN VT + W L L EG F++ + ++A+N + ++ + FA +
Sbjct: 318 HEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQFAED 377
Query: 197 AGP 199
A P
Sbjct: 378 ASP 380
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 206 ERYFNIRYPLPKQDMVAIPDFSAGAMENWGL 236
E F + Y L +VA+ F+ GAMEN GL
Sbjct: 259 EERFGLEYDLDIYMIVAVDFFNMGAMENKGL 289
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 24/183 (13%)
Query: 41 QKSVPMSTYLVAFIISDFTFRQSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNF 100
Q P YL A + DF + + V + R +D+ +A + + +
Sbjct: 177 QDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKW 236
Query: 101 FERYFNIRYPLPKQDMVAIPSLSALLFDDVRSSIHN-EYSIANT--------------IA 145
E F + Y L +VA+ + ++ +I N +Y +A T I
Sbjct: 237 DEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIG 296
Query: 146 HELAHQWFGNLVTMKWWTDLWLNEG--------FATYMAAQALNDV-HILFDSQVDFAAE 196
HE H W GN VT + W L L EG F++ + ++A+N + ++ + FA +
Sbjct: 297 HEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQFAED 356
Query: 197 AGP 199
A P
Sbjct: 357 ASP 359
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 206 ERYFNIRYPLPKQDMVAIPDFSAGAMENWGL 236
E F + Y L +VA+ F+ GAMEN GL
Sbjct: 238 EERFGLEYDLDIYMIVAVDFFNMGAMENKGL 268
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 41.2 bits (95), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 24/176 (13%)
Query: 48 TYLVAFIISDFTFRQSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNI 107
+YL A + D + + V+ + +V FA E+ + E F +
Sbjct: 180 SYLFALVAGDLAVTEDYFTTXSGRNVKIEFYTTEADKPKVGFAVESLKNAXKWDETRFGL 239
Query: 108 RYPLPKQDMVAIPSL--------------SALLFDDVRSSIHNEYS-IANTIAHELAHQW 152
Y L +VA+ + + D R++ ++ I + + HE H W
Sbjct: 240 EYDLDIFXVVAVGDFNXGAXENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFHNW 299
Query: 153 FGNLVTMKWWTDLWLNEGFATY--------MAAQALNDV-HILFDSQVDFAAEAGP 199
GN VT + W L L EG + A++A+ + +I Q F +AGP
Sbjct: 300 TGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIRLLRQHQFPEDAGP 355
Score = 30.8 bits (68), Expect = 0.66, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 190 QVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGL 236
+V FA E+ + E F + Y L +VA+ DF+ GA EN GL
Sbjct: 218 KVGFAVESLKNAXKWDETRFGLEYDLDIFXVVAVGDFNXGAXENKGL 264
>pdb|1DXQ|A Chain A, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
pdb|1DXQ|B Chain B, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
pdb|1DXQ|C Chain C, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
pdb|1DXQ|D Chain D, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
Length = 273
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 120 PSLSALLFDDVRSSI-----HNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATY 174
PS S+L + + R S H + A+ + + QWFG +K W + L GFA
Sbjct: 68 PSESSLAYKEGRLSPDIVAEHKKLEAADLVIFQFPLQWFGVPAILKGWFERVLVAGFAYT 127
Query: 175 MAA 177
AA
Sbjct: 128 YAA 130
>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase
pdb|3JYN|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase Complexed With Nadph
Length = 325
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
Query: 72 RVQFRTWARRDVIDQVDFAAEA-GPE---------FLNFFERYFNIR-YPLP 112
R+QF T +V++ VDF EA GP+ LNF + Y+ YP P
Sbjct: 4 RIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAP 55
>pdb|2ZUY|A Chain A, Crystal Structure Of Exotype Rhamnogalacturonan Lyase Yesx
Length = 620
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 21/62 (33%)
Query: 184 HILFDSQVDFAAE-----AGPEFLNFF-----ERYFNIRYPLPKQDMVAIPDFSAGAMEN 233
HI+ D Q DF E +GPE+L F E + Y P+ G +E+
Sbjct: 212 HIIGDEQADFRNEQGRILSGPEYLTVFKGETGEALTTVEYEPPR-----------GKLED 260
Query: 234 WG 235
WG
Sbjct: 261 WG 262
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
pdb|3HZJ|B Chain B, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
pdb|3HZJ|C Chain C, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
Length = 310
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 134 IHNEYSIANTIAHELAHQWFGNLVTMKW-------WTDLWLNEGF 171
+H+ +S N AH A QWF L T K+ DL L EG
Sbjct: 176 LHSHFSDLNLEAHXYASQWFLTLFTAKFPLCXVFHIIDLLLCEGL 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,000,714
Number of Sequences: 62578
Number of extensions: 270015
Number of successful extensions: 862
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 763
Number of HSP's gapped (non-prelim): 58
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)