RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3708
(240 letters)
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 265 bits (678), Expect = 3e-83
Identities = 88/199 (44%), Positives = 118/199 (59%), Gaps = 21/199 (10%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTF 60
K++F+I + + +ISNMPL +S ++ G + D F +V MSTYLVAFIISDF
Sbjct: 154 FKASFSIKIRREPRHLAISNMPLVKSVTVA--EGLIEDHFDVTVKMSTYLVAFIISDFES 211
Query: 61 RQSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIP 120
T + V+ +A D I+Q D+A +A L F+E YF+I YPLPKQD+ AIP
Sbjct: 212 VSKITKS----GVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIP 267
Query: 121 SLSA---------------LLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDL 165
+ LLFD +SS ++ I T+AHELAHQWFGNLVTM+WW DL
Sbjct: 268 DFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDL 327
Query: 166 WLNEGFATYMAAQALNDVH 184
WLNEGFA +M +++ H
Sbjct: 328 WLNEGFAKFMEFVSVSVTH 346
Score = 105 bits (264), Expect = 3e-26
Identities = 33/52 (63%), Positives = 40/52 (76%)
Query: 189 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
+Q D+A +A L F+E YF+I YPLPKQD+ AIPDF +GAMENWGL TYR
Sbjct: 232 NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYR 283
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 265 bits (679), Expect = 5e-83
Identities = 79/199 (39%), Positives = 115/199 (57%), Gaps = 21/199 (10%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTF 60
K+ F+I + + ++SNMP ++ ++ G + D F+ +V MSTYLVA+I+ DF
Sbjct: 216 FKANFSIKIRRESRHIALSNMPKVKTIELE--GGLLEDHFETTVKMSTYLVAYIVCDFHS 273
Query: 61 RQSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIP 120
TS+ V+ +A D +Q +A +A + L+F+E+YF+I YPL K D++AIP
Sbjct: 274 LSGFTSS----GVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIP 329
Query: 121 SLSA---------------LLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDL 165
+ LLFD SS ++ + IAHELAHQWFGNLVTM+WW D+
Sbjct: 330 DFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDI 389
Query: 166 WLNEGFATYMAAQALNDVH 184
WLNEGFA YM A+N +
Sbjct: 390 WLNEGFAKYMELIAVNATY 408
Score = 106 bits (265), Expect = 2e-26
Identities = 31/52 (59%), Positives = 42/52 (80%)
Query: 189 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
+Q +A +A + L+F+E+YF+I YPL K D++AIPDF+ GAMENWGLITYR
Sbjct: 294 NQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYR 345
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 255 bits (654), Expect = 1e-80
Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 27/199 (13%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTF 60
K+ F I++ K +ISNMP +R E + FQ + MSTYL+ I F +
Sbjct: 117 YKAVFAITVVIDKDYDAISNMPPKRIEV----SERKVVEFQDTPRMSTYLLYVGIGKFRY 172
Query: 61 RQSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIP 120
+ + + + + + F+E YF I Y LPK ++++P
Sbjct: 173 EYEKYRD-------IDLILASLKDIRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVP 225
Query: 121 SLSA---------------LLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDL 165
A + + S++ + + AN IAHE+AHQWFG+LVTMKWW DL
Sbjct: 226 EFGAGAMENWGAITFREIYMDIAEN-SAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDL 284
Query: 166 WLNEGFATYMAAQALNDVH 184
WLNE FAT+M+ + ++ +
Sbjct: 285 WLNESFATFMSYKTMDTLF 303
Score = 108 bits (271), Expect = 4e-27
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 188 DSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
D + + + + + F+E YF I Y LPK ++++P+F AGAMENWG IT+R
Sbjct: 189 DIRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMENWGAITFR 241
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 200 bits (509), Expect = 9e-61
Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 34/200 (17%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTF 60
+K T+T + PK+L ++ + + P + F + VP+ YL+A ++
Sbjct: 158 VKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALES 217
Query: 61 RQSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIP 120
RQ + W+ ++ +++ + L E Y + D++ +P
Sbjct: 218 RQIG--------PRTLVWSEKEQVEKSAYEFSETESMLKIAEDLG-GPYVWGQYDLLVLP 268
Query: 121 ----------------SLSALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTD 164
+ + L D S++N IAH+++H W GNLVT K W
Sbjct: 269 PSFPYGGMENPCLTFVTPTLLAGDK---------SLSNVIAHQISHSWTGNLVTNKTWDH 319
Query: 165 LWLNEGFATYMAAQALNDVH 184
WLNEG Y+ +
Sbjct: 320 FWLNEGHTVYLERHICGRLF 339
Score = 78.7 bits (194), Expect = 5e-17
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 190 QVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIP-DFSAGAMENWGLITYR 240
+ + L E Y + D++ +P F G MEN L
Sbjct: 235 KSAYEFSETESMLKIAEDLG-GPYVWGQYDLLVLPPSFPYGGMENPCLTFVT 285
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 192 bits (490), Expect = 8e-58
Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 25/193 (12%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTF 60
+KSTFT S+ P S + +E T + F++ VP+ YL+ D +
Sbjct: 163 VKSTFTASIESPLP-VVFSGIRIE-----DTSKDTNIYRFEQKVPIPAYLIGIASGDLSS 216
Query: 61 RQSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQD-MVAI 119
+ + + + E E Y D +V +
Sbjct: 217 APIGP--------RSTVYTEPFRLKDCQWEFENDVEKFIQTAEKIIFEYEWGTYDILVNV 268
Query: 120 PSLSA-------LLFDDVR-SSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGF 171
S + F + + ++ S + IAHELAH W GNLVT W WLNEG+
Sbjct: 269 DSYPYGGMESPNMTF--ATPTLLAHDRSNIDVIAHELAHSWSGNLVTNCSWNHFWLNEGW 326
Query: 172 ATYMAAQALNDVH 184
Y+ + + +H
Sbjct: 327 TVYLERRIIGAIH 339
Score = 84.1 bits (208), Expect = 7e-19
Identities = 8/52 (15%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 190 QVDFAAEAGPEFLNFFERYFNIRYPLPKQD-MVAIPDFSAGAMENWGLITYR 240
+ E E Y D +V + + G ME+ +
Sbjct: 234 DCQWEFENDVEKFIQTAEKIIFEYEWGTYDILVNVDSYPYGGMESPNMTFAT 285
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 186 bits (475), Expect = 8e-56
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 25/193 (12%)
Query: 1 MKSTFTISLGHPKKLTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFTF 60
++ T+T + K L ++ + E F + YL+A + D F
Sbjct: 162 VRVTYTARITTDKDLLAVMSANNE-----PGTERDGDYFFSMPQAIPPYLIAIGVGDLEF 216
Query: 61 RQSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIP 120
+ + +A ++D + ++ E+ + +Y + D++ +P
Sbjct: 217 KAMSHQT--------GIYAESYILDAAVAEFDDTQAMIDKAEQMY-GKYRWGRYDLLMLP 267
Query: 121 -SLSA-------LLFDDVR-SSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGF 171
S L F + + + + S+ N IAHELAH W GNLVT + W DLWLNEGF
Sbjct: 268 PSFPFGGMENPRLSF--ITPTVVAGDKSLVNLIAHELAHSWSGNLVTNESWRDLWLNEGF 325
Query: 172 ATYMAAQALNDVH 184
+Y+ + + V
Sbjct: 326 TSYVENRIMEAVF 338
Score = 74.4 bits (183), Expect = 1e-15
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 190 QVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIP-DFSAGAMENWGLITYR 240
+ ++ E+ + +Y + D++ +P F G MEN L
Sbjct: 234 AAVAEFDDTQAMIDKAEQMY-GKYRWGRYDLLMLPPSFPFGGMENPRLSFIT 284
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 168 bits (426), Expect = 5e-48
Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 29/226 (12%)
Query: 1 MKSTFTISLGHPKKL--TSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDF 58
M + + +++ K+ +SN +I G F YL A + D
Sbjct: 140 MMAKYDVTVTADKEKYPVLLSNGDKVNEFEI--PGGRHGARFNDPPLKPCYLFAVVAGDL 197
Query: 59 TFRQSNTSNPDLSR-VQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMV 117
+ + V+ ++ + ++ +A E + + F E YF + Y L + ++V
Sbjct: 198 KHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLV 257
Query: 118 AIPSLS---------------ALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWW 162
A+ + +LL S + I + HE HQ+ GN VT++ W
Sbjct: 258 AVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDW 317
Query: 163 TDLWLNEGFATYMAAQALNDVH---------ILFDSQVDFAAEAGP 199
L L EG + ++ + V F ++ P
Sbjct: 318 FQLTLKEGLTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSP 363
Score = 76.1 bits (187), Expect = 5e-16
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 189 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
S++ +A E + + F E YF + Y L + ++VA+ DF+ GAMEN GL +
Sbjct: 225 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFN 276
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 148 bits (375), Expect = 4e-41
Identities = 44/225 (19%), Positives = 77/225 (34%), Gaps = 28/225 (12%)
Query: 1 MKSTFTISLGHPKK--LTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDF 58
+ + FT + K +SN ++ + G +Q P YL A + DF
Sbjct: 158 VLARFTTKIIADKIKYPFLLSNGNRVAQGEL--ENGRHWVQWQDPFPKPCYLFALVAGDF 215
Query: 59 TFRQSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVA 118
+ + V + R +D+ +A + + + E F + Y L +VA
Sbjct: 216 DVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVA 275
Query: 119 IPSL---------------SALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWT 163
+ +L ++ + I I HE H W GN VT + W
Sbjct: 276 VDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWF 335
Query: 164 DLWLNEGFATYMAAQALNDVH---------ILFDSQVDFAAEAGP 199
L L EG + + +D+ + + FA +A P
Sbjct: 336 QLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQFAEDASP 380
Score = 60.3 bits (146), Expect = 9e-11
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 190 QVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
+ +A + + + E F + Y L +VA+ F+ GAMEN GL +
Sbjct: 243 RAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFN 293
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 144 bits (365), Expect = 1e-39
Identities = 42/200 (21%), Positives = 71/200 (35%), Gaps = 19/200 (9%)
Query: 2 KSTFTISLGHPKK--LTSISNMPLERSEDISTKPGWVLDVFQKSVPMSTYLVAFIISDFT 59
S FT ++ KK +SN + S WV ++ +YL A + D
Sbjct: 134 MSKFTTTIVADKKRYPVLLSNGNKIDGGEFSDGRHWV--KWEDPFSKPSYLFALVAGDLA 191
Query: 60 FRQSNTSNPDLSRVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAI 119
+ + V+ + +V FA E+ + + E F + Y L +VA+
Sbjct: 192 VTEDYFTTMSGRNVKIEFYTTEADKPKVGFAVESLKNAMKWDETRFGLEYDLDIFMVVAV 251
Query: 120 PSLSA---------------LLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTD 164
+ +L D ++ + I + + HE H W GN VT + W
Sbjct: 252 GDFNMGAMENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQ 311
Query: 165 LWLNEGFATYMAAQALNDVH 184
L L EG + + D
Sbjct: 312 LSLKEGLTVFRDQEFSGDRA 331
Score = 63.4 bits (154), Expect = 8e-12
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 189 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYR 240
+V FA E+ + + E F + Y L +VA+ DF+ GAMEN GL +
Sbjct: 217 PKVGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAMENKGLNIFN 268
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 3e-05
Identities = 47/275 (17%), Positives = 80/275 (29%), Gaps = 95/275 (34%)
Query: 17 SISNMPLERSEDISTKPGWVL----DVFQKSVPMSTY-------------LVA-FI--IS 56
++S+ LE + T ++ + F K +P T LV F+ +S
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 57 DFTFRQSNTSNPDLSRVQFRTWARRDVIDQVD---FAAEAGPE-------FLNFFERYFN 106
+ + ++ D AA+ E + Y
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTE-FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 107 IRY----PLPKQDMVAIPSLSALLFDDVRSSIHNEYSIANTIAHELAHQWF---GNLVTM 159
R P K S SA LF V +I F GN T
Sbjct: 129 ARIMAKRPFDK------KSNSA-LFRAVGEGNAQLVAI------------FGGQGN--TD 167
Query: 160 KWWTDLWLNEGFATY---------MAAQALNDVHILFDSQVDFAAEAGPEFLNFFERYFN 210
++ + L + + TY +A+ L+++ + F + N
Sbjct: 168 DYFEE--LRDLYQTYHVLVGDLIKFSAETLSEL-----------IRTTLDAEKVFTQGLN 214
Query: 211 I----RYP--LPKQD-MVAIPDFSAGAMENWGLIT 238
I P P +D +++IP S LI
Sbjct: 215 ILEWLENPSNTPDKDYLLSIP-IS------CPLIG 242
Score = 28.1 bits (62), Expect = 3.6
Identities = 40/241 (16%), Positives = 66/241 (27%), Gaps = 90/241 (37%)
Query: 27 EDISTKPGWVLDVFQKSVPMS------TYLVAFIISDFTFRQSNTSNPDLSRVQFR--TW 78
E+ S P + S+P+S L +++ T + P R + T
Sbjct: 220 ENPSNTPD---KDYLLSIPISCPLIGVIQLAHYVV---TAKLLGF-TPGELRSYLKGATG 272
Query: 79 ARRDVIDQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPSLSALLFDDVRSSIHNEY 138
+ ++ V A E +FF +++ L F VR
Sbjct: 273 HSQGLVTAVAIAETDSWE--SFFV--------------SVRKAITVLFFIGVRC------ 310
Query: 139 SIANTIAHELAHQWFGNLVTMKWWTDLWL---------NEGFATYMAA------------ 177
++ + N T L NEG + M +
Sbjct: 311 -----------YEAYPN-------TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 178 -QALN-------DVHI-LFDSQVDFAAEAG-PEFLNFFERYF-NIRYPLPKQDMVAIPDF 226
N V I L + + +G P+ L + P D IP F
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVV-SGPPQSLYGLNLTLRKAKAP-SGLDQSRIP-F 409
Query: 227 S 227
S
Sbjct: 410 S 410
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.002
Identities = 45/255 (17%), Positives = 77/255 (30%), Gaps = 83/255 (32%)
Query: 13 KKLTSISNMPLERSEDISTKPG-WVLDVFQKSVPMSTYLVAFIISDFTFRQSNTSNPDLS 71
KLT+I L E + L VF S + T L LS
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-------------------LS 393
Query: 72 RVQFRTWARRDVIDQVDFAAEAGPEFLNFFERYFNI-RYPLPKQDMVAIPSL--SALLFD 128
+ W D +N +Y + + P K+ ++IPS+ +
Sbjct: 394 LI----WFDVIKSDV--------MVVVNKLHKYSLVEKQP--KESTISIPSIYLELKVKL 439
Query: 129 DVRSSIH----NEYS------------------IANTIAHELAHQWFGNLVTM--KWWTD 164
+ ++H + Y+ + I H L + +T+ + D
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 165 L-WL-----NEGFATYMAAQALNDVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQ 218
+L ++ A + LN L L F++ Y P ++
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNT---LQQ-------------LKFYKPYICDNDPKYER 543
Query: 219 DMVAIPDFSAGAMEN 233
+ AI DF EN
Sbjct: 544 LVNAILDFLPKIEEN 558
Score = 32.1 bits (72), Expect = 0.16
Identities = 24/208 (11%), Positives = 61/208 (29%), Gaps = 68/208 (32%)
Query: 42 KSVPMSTYLVAFIISDF-------------TFRQSNTSNPDLSRVQFRTWARRDVIDQVD 88
K+ + + + + N+ L +Q ++ Q+D
Sbjct: 163 KTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-------KLLYQID 210
Query: 89 FAAEAGPEFLNFFERYFNIRYPLP-----KQDMVAIPSL-SALL-FDDVRSSIHNEYSIA 141
P + + + NI+ + + ++ + LL +V++ A
Sbjct: 211 ------PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--------A 256
Query: 142 NTIAHELAHQWFGN----LVTMKWWTDLWLNEGFATYMAAQALNDVHILFDSQVDFAAEA 197
F L+T + + +++A + L + +
Sbjct: 257 KAWNA------FNLSCKILLTTR-------FKQVTDFLSAATTTHI-SLDHHSMTLTPD- 301
Query: 198 GPEFLNFFERYFNIRYP-LPKQDMVAIP 224
E + +Y + R LP++ + P
Sbjct: 302 --EVKSLLLKYLDCRPQDLPREVLTTNP 327
Score = 31.7 bits (71), Expect = 0.22
Identities = 32/200 (16%), Positives = 62/200 (31%), Gaps = 49/200 (24%)
Query: 20 NMPLERSE-DISTKPGWVLDVFQKSVPMSTYLVAFIISDFTFRQSNTSNPDLSRVQFRTW 78
+M E E K +L VF+ + + +F + D+ +
Sbjct: 6 HMDFETGEHQYQYKD--ILSVFEDA----------FVDNFDCKDV----QDMPKSILSKE 49
Query: 79 ARRDVIDQVDFAAEAGPEFL-------------NFFERYFNIRYPL---PKQDMVAIPSL 122
+I D A +G L F E I Y P + PS+
Sbjct: 50 EIDHIIMSKD--AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 123 SALLFDDVRSSIHNE------YSIANTIAHELAHQWFGNLVTMKWWTDLWLN--EGFA-T 173
++ + R ++N+ Y+++ + Q L K + ++ G T
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN---VLIDGVLGSGKT 164
Query: 174 YMAAQALND--VHILFDSQV 191
++A V D ++
Sbjct: 165 WVALDVCLSYKVQCKMDFKI 184
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 32.3 bits (72), Expect = 0.15
Identities = 11/50 (22%), Positives = 14/50 (28%), Gaps = 11/50 (22%)
Query: 142 NTIAHELAHQWFG-----------NLVTMKWWTDLWLNEGFATYMAAQAL 180
+ HE H W L + LW EG +Y L
Sbjct: 269 SLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLL 318
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease,
heparin-binding, metalloproteinase, metzincin,
glycoprotein metal-binding; 2.00A {Homo sapiens} PDB:
2jih_A 3q2g_A* 3q2h_A*
Length = 300
Score = 27.5 bits (61), Expect = 3.5
Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 128 DDVRSSIHNEYS---IANTIAHELAH 150
D RS E A T AHEL H
Sbjct: 128 DPSRSCSVIEDDGLQAAFTTAHELGH 153
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo
sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Length = 217
Score = 26.2 bits (58), Expect = 8.7
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 139 SIANTIAHELAH 150
A T+AHE+ H
Sbjct: 140 HAAFTVAHEIGH 151
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold,
hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Length = 240
Score = 26.4 bits (58), Expect = 9.5
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 13/85 (15%)
Query: 110 PLPKQDMVAIPSLSALLFD------DVRSSIHNEYSIANTIAHELAHQWFGNLVTMKW-- 161
D + SL A +FD DV S++ A L+ W + W
Sbjct: 2 DYKDDDDKLVDSLRACVFDAYGTLLDVHSAVMRNADEVGASAEALSMLWRQRQLEYSWTR 61
Query: 162 -----WTDLWLNEGFATYMAAQALN 181
+ D W A A + +
Sbjct: 62 TLMHQYADFWQLTDEALTFALRTYH 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.424
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,826,819
Number of extensions: 224663
Number of successful extensions: 635
Number of sequences better than 10.0: 1
Number of HSP's gapped: 597
Number of HSP's successfully gapped: 35
Length of query: 240
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,160,982
Effective search space: 619986318
Effective search space used: 619986318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.1 bits)