Query psy3709
Match_columns 119
No_of_seqs 115 out of 1222
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 23:32:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3025|consensus 100.0 6.2E-29 1.4E-33 183.1 7.2 116 3-119 21-137 (137)
2 MTH00222 ATP9 ATP synthase F0 99.9 1.5E-24 3.2E-29 148.6 10.1 75 45-119 3-77 (77)
3 PRK07558 F0F1 ATP synthase sub 99.9 1.4E-23 3E-28 142.7 9.5 72 47-118 3-74 (74)
4 PRK06876 F0F1 ATP synthase sub 99.9 1.6E-23 3.4E-28 143.7 9.6 74 45-118 2-76 (78)
5 PRK13471 F0F1 ATP synthase sub 99.9 2E-22 4.4E-27 140.2 10.5 75 45-119 10-85 (85)
6 PRK13469 F0F1 ATP synthase sub 99.9 2.7E-22 5.9E-27 137.4 10.2 75 44-118 4-78 (79)
7 PRK08482 F0F1 ATP synthase sub 99.9 4E-22 8.7E-27 143.4 10.3 74 45-118 26-100 (105)
8 CHL00061 atpH ATP synthase CF0 99.9 4.9E-22 1.1E-26 137.1 10.1 73 46-118 4-77 (81)
9 TIGR03322 alt_F1F0_F0_C altern 99.9 8.8E-22 1.9E-26 137.2 10.3 75 44-118 3-78 (86)
10 PRK13468 F0F1 ATP synthase sub 99.9 1.4E-21 3E-26 135.1 10.0 73 46-118 4-77 (82)
11 PRK13464 F0F1 ATP synthase sub 99.9 1.4E-21 3.1E-26 139.8 10.1 72 47-118 11-83 (101)
12 PRK07159 F0F1 ATP synthase sub 99.9 1.4E-21 3.1E-26 139.6 9.7 71 48-118 29-99 (100)
13 PRK05880 F0F1 ATP synthase sub 99.9 1.8E-21 4E-26 134.4 9.8 72 47-118 5-77 (81)
14 PRK07354 F0F1 ATP synthase sub 99.9 3.4E-21 7.3E-26 132.6 10.0 73 46-118 4-77 (81)
15 TIGR01260 ATP_synt_c ATP synth 99.8 5.6E-21 1.2E-25 124.5 6.9 58 61-118 1-58 (58)
16 PRK07874 F0F1 ATP synthase sub 99.8 1.6E-20 3.5E-25 129.5 9.4 68 44-114 12-79 (80)
17 PRK13467 F0F1 ATP synthase sub 99.8 1.6E-20 3.4E-25 125.5 8.5 63 50-115 3-65 (66)
18 COG0636 AtpE F0F1-type ATP syn 99.8 6.8E-20 1.5E-24 125.5 9.6 71 48-118 6-77 (79)
19 PRK13466 F0F1 ATP synthase sub 99.8 5.6E-20 1.2E-24 122.8 8.1 56 60-115 10-65 (66)
20 PF00137 ATP-synt_C: ATP synth 99.7 2.2E-16 4.8E-21 103.7 9.3 65 50-118 1-66 (66)
21 PRK06251 V-type ATP synthase s 99.7 5E-16 1.1E-20 111.4 9.7 70 45-118 30-100 (102)
22 PRK08344 V-type ATP synthase s 99.6 3.3E-14 7.2E-19 108.1 10.3 71 44-117 83-154 (157)
23 PRK14893 V-type ATP synthase s 99.5 5.1E-14 1.1E-18 107.5 9.4 70 45-118 86-156 (161)
24 PRK14893 V-type ATP synthase s 99.5 9.3E-14 2E-18 106.1 9.7 67 47-117 7-74 (161)
25 PRK06271 V-type ATP synthase s 99.5 8.7E-14 1.9E-18 110.1 9.0 69 45-118 141-210 (213)
26 PRK06558 V-type ATP synthase s 99.5 1.8E-13 3.9E-18 104.3 9.7 71 44-118 86-157 (159)
27 PRK06271 V-type ATP synthase s 99.4 6.2E-13 1.3E-17 105.2 8.3 63 52-118 2-65 (213)
28 PRK09621 V-type ATP synthase s 99.4 1.3E-12 2.7E-17 98.1 8.7 65 47-115 75-140 (141)
29 PRK06558 V-type ATP synthase s 99.3 2.4E-11 5.3E-16 92.6 8.6 67 48-118 14-81 (159)
30 PRK08344 V-type ATP synthase s 99.2 1.3E-10 2.7E-15 88.6 8.8 63 50-116 2-65 (157)
31 PRK06649 V-type ATP synthase s 99.0 3.1E-09 6.6E-14 80.3 9.5 70 43-116 72-142 (143)
32 PRK09621 V-type ATP synthase s 98.6 2.4E-07 5.1E-12 69.7 8.6 64 50-117 4-68 (141)
33 KOG0232|consensus 98.4 3.7E-07 8E-12 70.0 4.3 70 45-118 83-153 (156)
34 TIGR01100 V_ATP_synt_C vacuola 98.3 4.3E-06 9.3E-11 60.6 7.9 63 51-117 3-66 (108)
35 PRK06649 V-type ATP synthase s 97.8 0.00014 3E-09 55.2 7.4 63 50-117 3-71 (143)
36 KOG0233|consensus 96.7 0.0002 4.3E-09 56.5 -1.9 64 49-116 41-105 (196)
37 KOG0233|consensus 96.1 0.0072 1.6E-07 47.8 4.0 69 43-115 119-188 (196)
38 TIGR01100 V_ATP_synt_C vacuola 70.5 4.2 9.1E-05 29.5 2.5 32 44-75 74-106 (108)
39 KOG0232|consensus 55.7 61 0.0013 25.2 6.6 60 52-115 11-71 (156)
40 PF06716 DUF1201: Protein of u 36.6 1.2E+02 0.0025 19.5 4.6 29 89-117 4-32 (54)
41 PF11299 DUF3100: Protein of u 25.7 2.8E+02 0.006 23.0 6.2 47 63-109 179-226 (241)
42 PF14045 YIEGIA: YIEGIA protei 21.9 1.7E+02 0.0037 24.8 4.4 41 73-117 94-141 (285)
No 1
>KOG3025|consensus
Probab=99.95 E-value=6.2e-29 Score=183.14 Aligned_cols=116 Identities=72% Similarity=1.037 Sum_probs=107.7
Q ss_pred cccchhHHhhcCcccccCCC-CcccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHh
Q psy3709 3 AMRPLSSSITSTSAFTQQTT-PQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYA 81 (119)
Q Consensus 3 ~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~q~~~~~~~i~~~~~~igAGla~lg~~GagiGiG~v~~~aieaiA 81 (119)
..||+| ...++||...+.. +++.+...++..|+|||++.++||++++|+||+|.+.+|..|+|+|+|.++++.+.+++
T Consensus 21 ~~~~ls-~~~~~~e~~~~~~~~~~s~~~~~~~~RsFQTS~is~~i~~aak~igag~atvgv~gsg~gig~vf~~li~g~a 99 (137)
T KOG3025|consen 21 AWRPLS-YSSSRPENVRTLQASSLSNIAQLVEPRSFQTSVISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYA 99 (137)
T ss_pred hhhhhh-hhhcccchhhhhhhcccccccccccccceehhhhHHHHHHHHHHhccchhhhccccccchHHHHHHHHHhhcc
Confidence 568999 6899999776655 44667777788999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3709 82 RNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 119 (119)
Q Consensus 82 RqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa~ 119 (119)
|||+.++++|.+.++|+|+.|++++||++++|+++|++
T Consensus 100 rnpslk~~lfs~ailgfalsea~glfclm~aflilfa~ 137 (137)
T KOG3025|consen 100 RNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM 137 (137)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999975
No 2
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.92 E-value=1.5e-24 Score=148.58 Aligned_cols=75 Identities=83% Similarity=1.311 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3709 45 DIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 119 (119)
Q Consensus 45 ~i~~~~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa~ 119 (119)
|+.++++++|+|+++++.+|+|+|+|+++++++|+++||||++++++++||+|++++|+++||+++++++++|++
T Consensus 3 ~~~~~~~~igaGla~iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa~ 77 (77)
T MTH00222 3 EILTAAKFVGAGAATIGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFAL 77 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 678889999999999999999999999999999999999999999999999999999999999999999999974
No 3
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.90 E-value=1.4e-23 Score=142.67 Aligned_cols=72 Identities=50% Similarity=0.922 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 47 DSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 47 ~~~~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
.++.+++|+|+++++.+|+|+|+|+++++++|+++||||++++++++|++|++++|+++||+++++++++|+
T Consensus 3 ~~~~~~igagla~laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllfa 74 (74)
T PRK07558 3 AEALKFIGAGLACIGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLFA 74 (74)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 457799999999999999999999999999999999999999999999999999999999999999999995
No 4
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.90 E-value=1.6e-23 Score=143.71 Aligned_cols=74 Identities=30% Similarity=0.461 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 45 ~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
|+..+.+++|+|+++ ++++|+|+|+|.++++++|+++||||++++++++|+++++++|+++||+++++++++|+
T Consensus 2 ~~~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~ 76 (78)
T PRK06876 2 ELIMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA 76 (78)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788999999999 99999999999999999999999999999999999999999999999999999999996
No 5
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.88 E-value=2e-22 Score=140.22 Aligned_cols=75 Identities=31% Similarity=0.574 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3709 45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 119 (119)
Q Consensus 45 ~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa~ 119 (119)
++..+.+++|+|+++ ++++|+|+|+|.++++++|+++||||++++++++|+++++++|+++||+++++++++|++
T Consensus 10 ~~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~~ 85 (85)
T PRK13471 10 ALILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLVL 85 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467889999999998 999999999999999999999999999999999999999999999999999999999974
No 6
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.88 E-value=2.7e-22 Score=137.44 Aligned_cols=75 Identities=33% Similarity=0.570 Sum_probs=72.5
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 44 RDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 44 ~~i~~~~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
++++.+++++|+|+++++++|+|+|+|.++++++++++||||+++|++++|+++++|+|+++||+++++++++|+
T Consensus 4 ~~~~~~~~~igagla~laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~ 78 (79)
T PRK13469 4 KAFVMGMSAIGAGIAALAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999999999999999999999999999999999999999999999999999999999996
No 7
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.88 E-value=4e-22 Score=143.38 Aligned_cols=74 Identities=28% Similarity=0.531 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 45 ~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
++..+++++|+|+++ ++++|+|+|+|+++++++|+++||||++++++++||+|++++|+++||+++++++++|+
T Consensus 26 ~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~ 100 (105)
T PRK08482 26 DMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYA 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888999999999 99999999999999999999999999999999999999999999999999999999996
No 8
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.88 E-value=4.9e-22 Score=137.07 Aligned_cols=73 Identities=36% Similarity=0.579 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 46 IDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 46 i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
+..+++++++|+++ ++++|+|+|+|.++++++|+++||||++++++++|+++++|+|+++||+++++++++|+
T Consensus 4 ~~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~ 77 (81)
T CHL00061 4 LISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677999999999 99999999999999999999999999999999999999999999999999999999996
No 9
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.87 E-value=8.8e-22 Score=137.21 Aligned_cols=75 Identities=21% Similarity=0.460 Sum_probs=71.6
Q ss_pred HhHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 44 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 44 ~~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
-++..+++++|+|+++ ++++|+|+|+|+++++++|+++||||++++++++|+++++++|+++||+++++++++|+
T Consensus 3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~ 78 (86)
T TIGR03322 3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFA 78 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999998 99999999999999999999999999999999999999999999999999999999986
No 10
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.87 E-value=1.4e-21 Score=135.08 Aligned_cols=73 Identities=25% Similarity=0.474 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 46 IDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 46 i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
+.++++++|+|+++ ++.+|+|+|+|+++++++|+++||||++++++++|+++++++|+++||+++++++++|+
T Consensus 4 ~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa 77 (82)
T PRK13468 4 LIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFA 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999 99999999999999999999999999999999999999999999999999999999996
No 11
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.86 E-value=1.4e-21 Score=139.81 Aligned_cols=72 Identities=24% Similarity=0.394 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 47 DSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 47 ~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
..+.+++++|+++ ++++|+|+|+|+++++++|+++||||++++++++||+|++++|+++||+++++++++|+
T Consensus 11 l~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa 83 (101)
T PRK13464 11 LNGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYA 83 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466899999988 99999999999999999999999999999999999999999999999999999999996
No 12
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=99.86 E-value=1.4e-21 Score=139.56 Aligned_cols=71 Identities=41% Similarity=0.765 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 48 SAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 48 ~~~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
..++++|+|+++++++|+|+|+|.++++++|++|||||++++++++||+++|++|+++||+++++++++|+
T Consensus 29 ~~~~~igaGLa~laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~ 99 (100)
T PRK07159 29 LKAAYIGAGLAMIGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV 99 (100)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33689999999999999999999999999999999999999999999999999999999999999999996
No 13
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.86 E-value=1.8e-21 Score=134.41 Aligned_cols=72 Identities=33% Similarity=0.481 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 47 DSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 47 ~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
..+++++|+|+++ ++++|+|+|+|+++++++|+++||||++++++++||+|++++|++.+|++++.++++|+
T Consensus 5 ~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~ 77 (81)
T PRK05880 5 IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567999999998 99999999999999999999999999999999999999999999999988888888875
No 14
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.86 E-value=3.4e-21 Score=132.57 Aligned_cols=73 Identities=33% Similarity=0.576 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 46 IDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 46 i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
+..+++++|+|+++ ++++|+|+|+|.++++++|+++||||++++++++|+++++|+|+++||+++++++++|+
T Consensus 4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~ 77 (81)
T PRK07354 4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55677999999999 99999999999999999999999999999999999999999999999999999999996
No 15
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=99.84 E-value=5.6e-21 Score=124.53 Aligned_cols=58 Identities=33% Similarity=0.597 Sum_probs=55.9
Q ss_pred hhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 61 GVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 61 g~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
+++|+|+|+|+++++++|+++||||++++++++|++|++++|+++||+++++++++|+
T Consensus 1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllfa 58 (58)
T TIGR01260 1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLFA 58 (58)
T ss_pred CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3579999999999999999999999999999999999999999999999999999985
No 16
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=99.84 E-value=1.6e-20 Score=129.53 Aligned_cols=68 Identities=35% Similarity=0.575 Sum_probs=64.8
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709 44 RDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFL 114 (119)
Q Consensus 44 ~~i~~~~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lviali 114 (119)
.|+.++.+++|+|++. +|+|+|+|+++++++|+++||||++++++++||+|+|++|+++||+++++|+
T Consensus 12 ~~~~~~~~~ig~Glaa---iGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l 79 (80)
T PRK07874 12 ETTFTGLGAVGYGLAA---IGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred HHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778999999999876 6899999999999999999999999999999999999999999999999987
No 17
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=99.84 E-value=1.6e-20 Score=125.52 Aligned_cols=63 Identities=32% Similarity=0.452 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709 50 AKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL 115 (119)
Q Consensus 50 ~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialil 115 (119)
+.++|+|++. +|+|+|+|+++++++|+++||||++++++++||+|++++|+++||++++++++
T Consensus 3 ~~~i~~Glaa---iGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il 65 (66)
T PRK13467 3 LTILALALAC---MGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577888765 68999999999999999999999999999999999999999999999999986
No 18
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.82 E-value=6.8e-20 Score=125.49 Aligned_cols=71 Identities=38% Similarity=0.670 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 48 SAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 48 ~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
+++.++++|+++ ++++|+|+|+|+++++++|++|||||+++++|++||++.+++|+++||+++++++++|+
T Consensus 6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~ 77 (79)
T COG0636 6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFA 77 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677899999999 99999999999999999999999999999999999999999999999999999999986
No 19
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.82 E-value=5.6e-20 Score=122.78 Aligned_cols=56 Identities=29% Similarity=0.479 Sum_probs=53.7
Q ss_pred HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709 60 VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL 115 (119)
Q Consensus 60 lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialil 115 (119)
++++|+|+|+|+++++++|+++||||++++++++||+|++++|+++||+++++|++
T Consensus 10 laa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~ 65 (66)
T PRK13466 10 LACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56689999999999999999999999999999999999999999999999999985
No 20
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=99.69 E-value=2.2e-16 Score=103.74 Aligned_cols=65 Identities=38% Similarity=0.661 Sum_probs=62.1
Q ss_pred HHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 50 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 50 ~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
++++|+|+++ ++.+|+|+|+|.++++++++++|||| ++++++++.+++|+++||+++++++++|+
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~----~~~~~li~~~~~E~~~i~glv~~~~l~~~ 66 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPE----LFTKMLIGAAFIEALGIYGLVVALLLLFK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGG----HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 4789999999 99999999999999999999999998 88999999999999999999999999985
No 21
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=99.67 E-value=5e-16 Score=111.36 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 45 ~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
+...+.+++|+|+++ ++++|+|+|+|.++++++++++||||..+ +++++++++|+++||+++++++++|+
T Consensus 30 ~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g----~~ii~~al~Ea~aIyglvVa~lLlf~ 100 (102)
T PRK06251 30 AQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFG----TVLIFVAIGEGIAVYGILFAVLMLFG 100 (102)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455778999999999 99999999999999999999999997655 68999999999999999999999986
No 22
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.56 E-value=3.3e-14 Score=108.10 Aligned_cols=71 Identities=30% Similarity=0.369 Sum_probs=66.8
Q ss_pred HhHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3709 44 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 117 (119)
Q Consensus 44 ~~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillF 117 (119)
.++.++++++++|+++ ++.+++|+|+|.++++.+++++||| +++|++++++++|+|+++||+++++++++.
T Consensus 83 ~~l~~g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P---~~l~~~~ii~~a~~Ea~ai~~lvvallll~ 154 (157)
T PRK08344 83 INLGKALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTP---GKTFTQTIILAAYAELMGIFGLVFAILGLS 154 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999 9999999999999999999999999 689999999999999999999999999875
No 23
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.53 E-value=5.1e-14 Score=107.55 Aligned_cols=70 Identities=29% Similarity=0.409 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 45 ~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
.+.++++++++|+++ ++.+|+|+|+|.++++++++++||||..+ +++++.++.|+++||+|+++++++|.
T Consensus 86 ~~~~~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~----~~li~~al~Et~~Iyglvv~~lll~~ 156 (161)
T PRK14893 86 SVTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFA----RGIIFSALPETQAIYGFLIAILLMVF 156 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999 99999999999999999999999998655 68999999999999999999999885
No 24
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.52 E-value=9.3e-14 Score=106.10 Aligned_cols=67 Identities=30% Similarity=0.410 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3709 47 DSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 117 (119)
Q Consensus 47 ~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillF 117 (119)
...++++|+++++ ++++|+|+|+|+++++++++++||||.. ++++++++++|+++||+++++++++|
T Consensus 7 ~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~----~~~li~~al~Ea~aIyglvia~lll~ 74 (161)
T PRK14893 7 GTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMF----ARGIIFSALPETQAIYGFLIAILLLV 74 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999 9999999999999999999999999864 57899999999999999999999988
No 25
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.50 E-value=8.7e-14 Score=110.06 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 45 ~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
+..++++++++|+++ ++.+ +|+|+|.++++++|+++||||.++| ++++.+++|+++||+++++++++|+
T Consensus 141 ~~~~g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~----~~i~~a~~Ea~~i~~lvvalil~f~ 210 (213)
T PRK06271 141 PGVETIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGK----GLVLAVMPETFAIFGLLIAILIMLG 210 (213)
T ss_pred chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335688999999998 7777 9999999999999999999998886 4999999999999999999999986
No 26
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.49 E-value=1.8e-13 Score=104.31 Aligned_cols=71 Identities=20% Similarity=0.196 Sum_probs=65.5
Q ss_pred HhHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 44 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 44 ~~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
.++.++...+++|+++ ++.+++|+++|.++++++++++||||..+ ++++..+|+|+++||+++++++++|.
T Consensus 86 ~~~~~g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~----~~li~~~~~E~~aI~glvvaill~~~ 157 (159)
T PRK06558 86 LSLAQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFT----KGIILAAMVETYAILAFVVSFLLLNG 157 (159)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567899999999999 99999999999999999999999997555 68999999999999999999999875
No 27
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.42 E-value=6.2e-13 Score=105.25 Aligned_cols=63 Identities=37% Similarity=0.444 Sum_probs=58.6
Q ss_pred HHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 52 FIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 52 ~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
.+|+|+++ ++++|+|+|+|.++++++|+++||||.++ +++++.+++|+++||+++++++++|+
T Consensus 2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~----~~li~~al~e~~~Iyglvia~ll~~~ 65 (213)
T PRK06271 2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFG----TAIVFQALPQTQGLYGFLVAILILFV 65 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47899988 99999999999999999999999998766 58999999999999999999999985
No 28
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=99.41 E-value=1.3e-12 Score=98.11 Aligned_cols=65 Identities=26% Similarity=0.342 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709 47 DSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL 115 (119)
Q Consensus 47 ~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialil 115 (119)
.++...+++|+++ ++.+++|+++|.+.++++++++||||..+ +++++.+++|+.+||++++++++
T Consensus 75 ~~~~~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~----k~~i~~alvE~~ai~~lv~a~ll 140 (141)
T PRK09621 75 LSALSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYG----KSFAAIGIVESFALFAFVFALLL 140 (141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667889999998 99999999999999999999999998555 57999999999999999999986
No 29
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.27 E-value=2.4e-11 Score=92.63 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 48 SAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 48 ~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
..+.++|+++++ ++.+|+++|+|.++++++++++||||..+| .++..++.|+++||++++++++++.
T Consensus 14 ~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k----~lI~~~l~e~~aIyGlvva~li~~~ 81 (159)
T PRK06558 14 AFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGK----ALILQLLPGTQGLYGFVIGFLIWQK 81 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999998 999999999999999999999999987765 4799999999999999999999875
No 30
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.18 E-value=1.3e-10 Score=88.55 Aligned_cols=63 Identities=24% Similarity=0.289 Sum_probs=58.2
Q ss_pred HHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709 50 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLL 116 (119)
Q Consensus 50 ~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialill 116 (119)
+.++|+++++ ++++|+++|+|..+++++++++|||| +++++++..++.|+.+||+++++++++
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~----~~~~~li~~a~~~t~~IYGlvi~~~i~ 65 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEK----NFRNALILAGLPMTQTIYGLITLFLIL 65 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4679999999 99999999999999999999999997 777899999999999999999987664
No 31
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=99.01 E-value=3.1e-09 Score=80.34 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=64.3
Q ss_pred HHhHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709 43 SRDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLL 116 (119)
Q Consensus 43 ~~~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialill 116 (119)
..++.+++..+++|+.+ ++...+|+.+|.++...+++++||| ++|.++++..+|.|+.+||++++++++.
T Consensus 72 ~~s~~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p----~~f~~~ii~~~~~Et~Al~~lv~s~~~~ 142 (143)
T PRK06649 72 VMSQTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETG----KGFANYLLVLGLIETVALFVMVFLMIFK 142 (143)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667889999999999 8889999999999999999999999 5888999999999999999999999875
No 32
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=98.63 E-value=2.4e-07 Score=69.71 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=56.8
Q ss_pred HHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3709 50 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 117 (119)
Q Consensus 50 ~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillF 117 (119)
..++|+++++ ++++|+++|++..+..+.....|+||.++| .++..++.|+.+||+++++++++.
T Consensus 4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~----~~i~~~lP~tq~IYG~ii~~li~~ 68 (141)
T PRK09621 4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGK----IIGLSAMPSSQSIYGLILMLLLND 68 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhh----HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3568999998 999999999999999999999999987665 566677999999999999999874
No 33
>KOG0232|consensus
Probab=98.39 E-value=3.7e-07 Score=69.98 Aligned_cols=70 Identities=30% Similarity=0.434 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 45 ~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
.+.+++..+++|+.+ +..+++|..+|.++.....+.+||| +++..|++-+.|.|.+++|+|++++++.+.
T Consensus 83 ~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQP----r~fv~~iLiLif~evlGLygLiva~~l~~~ 153 (156)
T KOG0232|consen 83 SLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQP----RLFVGMILILIFAEVLGLYGLIVALALLTV 153 (156)
T ss_pred chhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCc----hhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 466788889999999 8899999999999999999999999 688889999999999999999999998764
No 34
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=98.30 E-value=4.3e-06 Score=60.63 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=52.8
Q ss_pred HHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3709 51 KFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 117 (119)
Q Consensus 51 ~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillF 117 (119)
.++|+++++ ++.+|+++|.+..+..-...=.++|| ++.+.++-.+|.|+.+||+++++++++.
T Consensus 3 ~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~----~~~k~lI~vi~~g~~gIYGlIia~ii~~ 66 (108)
T TIGR01100 3 GVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPE----LIMKSIIPVVMAGIIAIYGLVVAVLIAG 66 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 468889988 99999999999988555555555585 6667899999999999999999999875
No 35
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=97.75 E-value=0.00014 Score=55.16 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=53.5
Q ss_pred HHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhc-----CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3709 50 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYAR-----NPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 117 (119)
Q Consensus 50 ~~~igAGla~-lg~~GagiGiG~v~~~aieaiAR-----qPe~~~~l~~~~~lg~Al~Eal~iy~lvialillF 117 (119)
..++|+++++ ++.+|+++|.|..+..+...+.+ +||.. . .++-.++.-+.+||+++++++++.
T Consensus 3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~f----~-~lvl~~lP~TqgiYG~vi~~~i~~ 71 (143)
T PRK06649 3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAPF----L-LIVFVGAPLTQTIYGYILMNTLLG 71 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchHH----H-HHHHHhchhHHHHHHHHHHHHHHh
Confidence 3578999998 99999999999999988888887 88733 3 677788889999999999998863
No 36
>KOG0233|consensus
Probab=96.68 E-value=0.0002 Score=56.51 Aligned_cols=64 Identities=23% Similarity=0.362 Sum_probs=57.7
Q ss_pred HHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709 49 AAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLL 116 (119)
Q Consensus 49 ~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialill 116 (119)
.+..+|.++++ +..+|++.|+=..+.+.+.+--|-| |+.|+-++...|.|+.+||++++++++.
T Consensus 41 ~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAP----RI~TKnLisIIfCEavaiyglI~Aivls 105 (196)
T KOG0233|consen 41 MWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAP----RIKTKNLISIIFCEAVAIYGLIMAIVLS 105 (196)
T ss_pred HHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCC----cccccceEEEEeehHHHHHHHHHHHHHH
Confidence 34568888888 8999999999999999999999999 7888899999999999999999999875
No 37
>KOG0233|consensus
Probab=96.14 E-value=0.0072 Score=47.83 Aligned_cols=69 Identities=22% Similarity=0.400 Sum_probs=60.8
Q ss_pred HHhHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709 43 SRDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL 115 (119)
Q Consensus 43 ~~~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialil 115 (119)
.+++..+...+++|+.+ +.-+-+|+..|++++.+.-+=|.|| .||.+.++--.|--++++|++++++++
T Consensus 119 ~~n~~~gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~----tLFvKilivEIfgSaiGLfGlIvgi~m 188 (196)
T KOG0233|consen 119 AQNLYTGYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANP----TLFVKILIVEIFGSAIGLFGLIVGIVM 188 (196)
T ss_pred cchhhhhHHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCc----cceeeeehhhhHHHHHHHHHHHHHhhc
Confidence 45678899999999998 7778899999999999999999999 477777888888899999999999875
No 38
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=70.52 E-value=4.2 Score=29.50 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=27.8
Q ss_pred HhHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHH
Q psy3709 44 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGS 75 (119)
Q Consensus 44 ~~i~~~~~~igAGla~-lg~~GagiGiG~v~~~ 75 (119)
.++.+++..+++||++ ++.+.+|+.+|.+++.
T Consensus 74 ~s~~~g~~~~~aGL~vGl~~l~sgi~~Gi~G~~ 106 (108)
T TIGR01100 74 YSLYKGFIHLGAGLAVGLSGLAAGFAIGIVGDA 106 (108)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhccccccC
Confidence 3677899999999999 9999999999988754
No 39
>KOG0232|consensus
Probab=55.66 E-value=61 Score=25.16 Aligned_cols=60 Identities=20% Similarity=0.380 Sum_probs=38.6
Q ss_pred HHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709 52 FIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL 115 (119)
Q Consensus 52 ~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialil 115 (119)
..|++.++ ...+|++.|.. +.-.+++.--..++++-.+-++=..++-.+.||+++++.++
T Consensus 11 ~~g~~~a~v~s~lgaa~Gta----k~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i 71 (156)
T KOG0232|consen 11 IMGAAAAMVFSALGAAYGTA----KSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVI 71 (156)
T ss_pred HhhHHHHHHHHHHHHHHhhh----hcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 45555555 44555555543 33344443334444566788899999999999999888764
No 40
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=36.57 E-value=1.2e+02 Score=19.54 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3709 89 QLFSYAILGFALSEAMGLFSLMMAFLLLF 117 (119)
Q Consensus 89 ~l~~~~~lg~Al~Eal~iy~lvialillF 117 (119)
-++.+..+++++.--+.|+++++-++..+
T Consensus 4 vLRs~L~~~F~~lIC~Fl~~~~~F~~F~~ 32 (54)
T PF06716_consen 4 VLRSYLLLAFGFLICLFLFCLVVFIWFVY 32 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999998888888887766543
No 41
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=25.66 E-value=2.8e+02 Score=23.00 Aligned_cols=47 Identities=26% Similarity=0.421 Sum_probs=28.6
Q ss_pred hhhHHHhHhhHHHHHHHHhc-CCchhhhhHHHHHHHHHHHHHHHHHHH
Q psy3709 63 AGSGAGIGSVFGSLIIGYAR-NPSLKQQLFSYAILGFALSEAMGLFSL 109 (119)
Q Consensus 63 ~GagiGiG~v~~~aieaiAR-qPe~~~~l~~~~~lg~Al~Eal~iy~l 109 (119)
+++|.|-|...+.+..+++. .||.++++..+.=..--+.-..++|-.
T Consensus 179 MasGvGSgSMMaAa~~aL~~~~P~~a~~i~A~AaaSNllt~~~G~Y~~ 226 (241)
T PF11299_consen 179 MASGVGSGSMMAAASGALAAAYPEMADQILAFAAASNLLTSVTGLYMS 226 (241)
T ss_pred HHcCCcHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655555555443 499999987665555555555555543
No 42
>PF14045 YIEGIA: YIEGIA protein
Probab=21.92 E-value=1.7e+02 Score=24.78 Aligned_cols=41 Identities=10% Similarity=0.262 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Q psy3709 73 FGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF-------SLMMAFLLLF 117 (119)
Q Consensus 73 ~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy-------~lvialillF 117 (119)
+...+|++||-=|.++ |+-+..+|.-+++.+ |.+++++.++
T Consensus 94 G~~YIEgIA~~FEaRN----Yl~m~ts~~Ts~~~~l~~~~~~g~i~g~i~~~ 141 (285)
T PF14045_consen 94 GAAYIEGIAKTFEARN----YLVMFTSFLTSLAYILFFNIWVGVIAGLIAIL 141 (285)
T ss_pred chHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999888776 777888888777766 4455555443
Done!