Query psy3709
Match_columns 119
No_of_seqs 115 out of 1222
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 23:32:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4s_A ATP synthase subunit 9, 99.9 9.6E-27 3.3E-31 158.2 8.4 76 44-119 1-76 (76)
2 2wgm_A ATP synthase subunit C, 99.9 2.1E-22 7.2E-27 139.6 10.4 77 42-118 5-81 (89)
3 2xqu_A C15_RING, ATP synthase 99.9 9E-22 3.1E-26 134.4 10.0 74 45-118 4-78 (82)
4 1wu0_A ATP synthase C chain; A 99.9 1.4E-21 4.7E-26 130.7 7.9 69 50-118 3-72 (72)
5 2x2v_A ATP synthase subunit C; 99.8 4.1E-21 1.4E-25 127.4 9.1 66 52-117 3-69 (69)
6 1a91_A F1FO ATPase subunit C; 99.8 1.3E-20 4.6E-25 128.0 10.6 68 51-118 9-77 (79)
7 2xnd_J ATP synthase lipid-bind 99.8 7.5E-23 2.6E-27 136.9 -1.4 70 48-117 3-72 (72)
8 2bl2_A V-type sodium ATP synth 99.6 3.8E-16 1.3E-20 117.4 8.6 71 44-118 84-155 (156)
9 2bl2_A V-type sodium ATP synth 99.2 4.4E-11 1.5E-15 89.8 8.6 67 48-118 12-79 (156)
10 1rh5_B Preprotein translocase 18.9 1.1E+02 0.0038 19.7 3.3 22 45-66 33-54 (74)
No 1
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=99.94 E-value=9.6e-27 Score=158.23 Aligned_cols=76 Identities=58% Similarity=0.951 Sum_probs=72.4
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3709 44 RDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 119 (119)
Q Consensus 44 ~~i~~~~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa~ 119 (119)
+|+..++|+||+|++++|.+|+|+|+|+++++++++++||||+++++|+++++|+|++|+++||+|+++|+++|+.
T Consensus 1 M~lv~aak~IGaGlA~ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFav 76 (76)
T 4f4s_A 1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV 76 (76)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHHHHHHHHHHHHHHHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999999974
No 2
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=99.88 E-value=2.1e-22 Score=139.57 Aligned_cols=77 Identities=35% Similarity=0.607 Sum_probs=73.6
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 42 VSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 42 ~~~~i~~~~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
.++++.++++++|+|+++++++|+|+|+|.++++++|+++||||+++++|++++++++++|+++||+++++++++|+
T Consensus 5 ~~~~~~~~~~~igaGla~la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~ 81 (89)
T 2wgm_A 5 FAKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYA 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999889999999999999999999999999999999999999999999999999999999986
No 3
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=99.87 E-value=9e-22 Score=134.39 Aligned_cols=74 Identities=34% Similarity=0.602 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 45 ~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
++.++++++|+|+++ ++++|+|+|+|.++++++++++||||.++++|++++++++|+|+++||+++++++++|+
T Consensus 4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~ 78 (82)
T 2xqu_A 4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFA 78 (82)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567899999999999 99999999999999999999999999999999999999999999999999999999986
No 4
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=99.85 E-value=1.4e-21 Score=130.69 Aligned_cols=69 Identities=30% Similarity=0.514 Sum_probs=66.6
Q ss_pred HHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 50 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 50 ~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
++++|+|+++ ++++|+|+|+|.++++++|+++||||.++|+|++++++++|+|+++||+++++++++|+
T Consensus 3 ~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf~ 72 (72)
T 1wu0_A 3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLGR 72 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5789999999 99999999999999999999999999999999999999999999999999999999985
No 5
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=99.85 E-value=4.1e-21 Score=127.44 Aligned_cols=66 Identities=26% Similarity=0.562 Sum_probs=64.0
Q ss_pred HHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3709 52 FIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 117 (119)
Q Consensus 52 ~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillF 117 (119)
++|+|+++ ++++|+|+|+|.++++++++++||||+++|+|++++++++++|+++||+++++++++|
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf 69 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLILF 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58999998 9999999999999999999999999999999999999999999999999999999987
No 6
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=99.84 E-value=1.3e-20 Score=127.99 Aligned_cols=68 Identities=24% Similarity=0.444 Sum_probs=61.6
Q ss_pred HHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 51 KFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 51 ~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
..+++++++ ++++|+|+|+|.++++++++++||||+++++|++++++++|+|+++||+++++++++|+
T Consensus 9 ~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~ 77 (79)
T 1a91_A 9 LYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555 55688999999999999999999999999999999999999999999999999999996
No 7
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=99.84 E-value=7.5e-23 Score=136.92 Aligned_cols=70 Identities=93% Similarity=1.394 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3709 48 SAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 117 (119)
Q Consensus 48 ~~~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillF 117 (119)
++++++|+|+++++++|+|+|+|.++++++|+++||||+++++|++|+++++|+|+++||+++++++++|
T Consensus 3 ~~~~~igaGLa~l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lllf 72 (72)
T 2xnd_J 3 TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 72 (72)
T ss_dssp TTTTTTTTTGGGGGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4678899999988999999999999999999999999999999999999999999999999999999876
No 8
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.65 E-value=3.8e-16 Score=117.39 Aligned_cols=71 Identities=23% Similarity=0.320 Sum_probs=66.4
Q ss_pred HhHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 44 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 44 ~~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
.++.++++.+|+|+++ ++.+|+|+|+|.++++++++++||||+++| ++++++|+|+++||+++++++++|+
T Consensus 84 ~~~~~g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~----~ii~~a~~Ea~ai~glvia~ll~~~ 155 (156)
T 2bl2_A 84 MSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATK----GIIFAAMVETYAILGFVISFLLVLN 155 (156)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH----HHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3577899999999999 999999999999999999999999987765 8999999999999999999999986
No 9
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.21 E-value=4.4e-11 Score=89.78 Aligned_cols=67 Identities=22% Similarity=0.337 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709 48 SAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118 (119)
Q Consensus 48 ~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa 118 (119)
..+.++|+++++ ++.+|+++|+|.++++++++.+|||| ++.++++..++.|+++||++++++++++.
T Consensus 12 ~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~----~~~k~li~~~l~e~~~IYGlvva~li~~~ 79 (156)
T 2bl2_A 12 MVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPE----KFGQALILQLLPGTQGLYGFVIAFLIFIN 79 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGG----GHHHHHHHHHGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367889999999 99999999999999999999999997 44679999999999999999999999874
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=18.88 E-value=1.1e+02 Score=19.75 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhhH
Q psy3709 45 DIDSAAKFIGAGAATVGVAGSG 66 (119)
Q Consensus 45 ~i~~~~~~igAGla~lg~~Gag 66 (119)
+-.+.++..|+|++++|.+|--
T Consensus 33 EF~~iak~~~iG~~imG~IGfi 54 (74)
T 1rh5_B 33 EYLAVAKVTALGISLLGIIGYI 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3446678888999888766643
Done!