Query psy3709
Match_columns 119
No_of_seqs 115 out of 1222
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 23:32:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3709.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3709hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1c99a_ f.17.1.1 (A:) F1F0 ATP 99.9 1.5E-24 1.1E-28 146.6 10.2 76 44-119 2-78 (79)
2 d1rh5b_ f.23.28.1 (B:) Preprot 16.0 1E+02 0.0073 17.6 4.7 35 80-115 14-48 (56)
3 d1l7va_ f.22.1.1 (A:) ABC tran 7.3 1.5E+02 0.011 21.5 3.2 19 73-91 73-91 (324)
4 d1ixsa_ a.5.1.1 (A:) DNA helic 7.0 1.5E+02 0.011 16.5 2.3 27 63-89 13-39 (50)
5 d1jb0m_ f.23.19.1 (M:) Subunit 5.8 75 0.0055 16.2 0.4 14 101-114 4-17 (31)
6 d1or7c_ a.180.1.1 (C:) N-termi 4.8 2.4E+02 0.018 15.7 2.5 25 76-100 19-43 (66)
7 d1izoa_ a.104.1.1 (A:) Cytochr 4.8 3.8E+02 0.028 18.2 4.1 24 69-92 242-265 (411)
8 d2fq4a2 a.121.1.1 (A:78-192) T 4.8 1.5E+02 0.011 17.4 1.5 24 70-93 23-46 (115)
9 d3czha1 a.104.1.1 (A:40-502) V 4.1 2.6E+02 0.019 18.7 2.6 25 69-93 276-300 (463)
10 d2hkua2 a.121.1.1 (A:88-208) P 3.9 2.4E+02 0.017 18.3 2.1 32 64-95 16-47 (121)
No 1
>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}
Probab=99.91 E-value=1.5e-24 Score=146.64 Aligned_cols=76 Identities=21% Similarity=0.418 Sum_probs=72.7
Q ss_pred HhHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3709 44 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 119 (119)
Q Consensus 44 ~~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa~ 119 (119)
++++.++.++++|+++ ++++|+|+|+|.+++|++|++|||||++++++++||++++++|+++||+++++++++|++
T Consensus 2 e~~~~~~~~l~agl~~gl~aiG~giG~G~~~~~ale~~ARqPE~~~~l~~~m~ig~al~Ea~~i~~lvialillFa~ 78 (79)
T d1c99a_ 2 ENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAV 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888999999998 999999999999999999999999999999999999999999999999999999999985
No 2
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=15.99 E-value=1e+02 Score=17.65 Aligned_cols=35 Identities=11% Similarity=0.285 Sum_probs=20.8
Q ss_pred HhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709 80 YARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL 115 (119)
Q Consensus 80 iARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialil 115 (119)
.+|.|+.++=.+.-..-++++. .++++|+++-++.
T Consensus 14 ~~~KP~~~Ef~~ia~v~~iG~~-i~G~IGf~I~li~ 48 (56)
T d1rh5b_ 14 VLKKPTKDEYLAVAKVTALGIS-LLGIIGYIIHVPA 48 (56)
T ss_dssp SEECCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5789988875555555444443 3555666665544
No 3
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=7.27 E-value=1.5e+02 Score=21.49 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCchhhhhH
Q psy3709 73 FGSLIIGYARNPSLKQQLF 91 (119)
Q Consensus 73 ~~~aieaiARqPe~~~~l~ 91 (119)
.+..++.+.|||=+.+.+.
T Consensus 73 sG~~lQ~~~rNpLA~P~il 91 (324)
T d1l7va_ 73 SGAVMQALFENPLAEPGLL 91 (324)
T ss_dssp HHHHHHHHHTCTTCCTTTT
T ss_pred HHHHHHHHhCCCCCCchHH
Confidence 4566899999987666543
No 4
>d1ixsa_ a.5.1.1 (A:) DNA helicase RuvA subunit, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=6.96 E-value=1.5e+02 Score=16.54 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=20.9
Q ss_pred hhhHHHhHhhHHHHHHHHhcCCchhhh
Q psy3709 63 AGSGAGIGSVFGSLIIGYARNPSLKQQ 89 (119)
Q Consensus 63 ~GagiGiG~v~~~aieaiARqPe~~~~ 89 (119)
+.-|.=.+.+=+-..+=++.||++..+
T Consensus 13 ~aLGFrE~QvRsvVaell~~nP~a~aq 39 (50)
T d1ixsa_ 13 AALGFKEAQARAVVLDLLAQNPKARAQ 39 (50)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCCHH
T ss_pred HHhcccHHHHHHHHHHHHHhCccccHH
Confidence 445566777888888999999998765
No 5
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=5.77 E-value=75 Score=16.20 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q psy3709 101 SEAMGLFSLMMAFL 114 (119)
Q Consensus 101 ~Eal~iy~lviali 114 (119)
.++-.+.+++++++
T Consensus 4 sdtqv~valvial~ 17 (31)
T d1jb0m_ 4 TDTQVYVALVIALL 17 (31)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34455566666654
No 6
>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]}
Probab=4.85 E-value=2.4e+02 Score=15.67 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=20.4
Q ss_pred HHHHHhcCCchhhhhHHHHHHHHHH
Q psy3709 76 LIIGYARNPSLKQQLFSYAILGFAL 100 (119)
Q Consensus 76 aieaiARqPe~~~~l~~~~~lg~Al 100 (119)
.+..+..+||.+.....|=+++=++
T Consensus 19 l~~~l~~d~e~~~~W~~Yhli~d~l 43 (66)
T d1or7c_ 19 LLNELAHNPEMQKTWESYHLIRDSM 43 (66)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4677788999999999988887665
No 7
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis [TaxId: 1423]}
Probab=4.82 E-value=3.8e+02 Score=18.17 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=18.1
Q ss_pred hHhhHHHHHHHHhcCCchhhhhHH
Q psy3709 69 IGSVFGSLIIGYARNPSLKQQLFS 92 (119)
Q Consensus 69 iG~v~~~aieaiARqPe~~~~l~~ 92 (119)
.+.....++--+++|||...+++.
T Consensus 242 ts~~l~~~l~~L~~~P~vq~kl~~ 265 (411)
T d1izoa_ 242 ISYFLVFSALALHEHPKYKEWLRS 265 (411)
T ss_dssp HHHHHHHHHHHHHHSTHHHHHHHT
T ss_pred chHHHHHHHHHHHhcccccccccc
Confidence 445556667789999999988853
No 8
>d2fq4a2 a.121.1.1 (A:78-192) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=4.77 E-value=1.5e+02 Score=17.35 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=16.2
Q ss_pred HhhHHHHHHHHhcCCchhhhhHHH
Q psy3709 70 GSVFGSLIIGYARNPSLKQQLFSY 93 (119)
Q Consensus 70 G~v~~~aieaiARqPe~~~~l~~~ 93 (119)
|.+....+....|+||....+...
T Consensus 23 g~~~~~li~e~~~~p~l~~~~~~~ 46 (115)
T d2fq4a2 23 GTIINELVGEGQFDSKLAEEYRVR 46 (115)
T ss_dssp TTHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHH
Confidence 345666677778889887765443
No 9
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.15 E-value=2.6e+02 Score=18.66 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=18.7
Q ss_pred hHhhHHHHHHHHhcCCchhhhhHHH
Q psy3709 69 IGSVFGSLIIGYARNPSLKQQLFSY 93 (119)
Q Consensus 69 iG~v~~~aieaiARqPe~~~~l~~~ 93 (119)
.......++--+++|||+..+++.-
T Consensus 276 t~~~l~~~l~~L~~~P~~~~kl~~E 300 (463)
T d3czha1 276 TTNVLRWAILFMALYPNIQGQVQKE 300 (463)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred chhhhhhHHHhhccCcHHHHHHHHH
Confidence 3445667788899999988888653
No 10
>d2hkua2 a.121.1.1 (A:88-208) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=3.95 E-value=2.4e+02 Score=18.27 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=21.3
Q ss_pred hhHHHhHhhHHHHHHHHhcCCchhhhhHHHHH
Q psy3709 64 GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAI 95 (119)
Q Consensus 64 GagiGiG~v~~~aieaiARqPe~~~~l~~~~~ 95 (119)
|++.--=-.+..++-...|+||+++-+-.+.=
T Consensus 16 g~~apSv~lfa~Am~~~~rrpeLa~li~~tL~ 47 (121)
T d2hkua2 16 GPGAPSVELFTSAMLMTGRRSELRDLITDTLR 47 (121)
T ss_dssp TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHccCChhHHHHHHHHHH
Confidence 33333333577788888899999987765543
Done!