RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3709
(119 letters)
>gnl|CDD|164765 MTH00222, ATP9, ATP synthase F0 subunit 9; Provisional.
Length = 77
Score = 117 bits (294), Expect = 8e-36
Identities = 62/75 (82%), Positives = 71/75 (94%)
Query: 45 DIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAM 104
+I +AAKF+GAGAAT+G AGSGAGIG+VFG+LIIGYARNPSLKQQLF+YAILGFA+SEAM
Sbjct: 3 EILTAAKFVGAGAATIGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAM 62
Query: 105 GLFSLMMAFLLLFAF 119
GLF LMMAFL+LFA
Sbjct: 63 GLFCLMMAFLILFAL 77
>gnl|CDD|181027 PRK07558, PRK07558, F0F1 ATP synthase subunit C; Validated.
Length = 74
Score = 75.8 bits (187), Expect = 1e-19
Identities = 36/70 (51%), Positives = 51/70 (72%)
Query: 49 AAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFS 108
A KFIGAG A +G+AG+ G+G++FG+ + G RNPS F Y ++G AL+EA+G+FS
Sbjct: 5 ALKFIGAGLACIGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFS 64
Query: 109 LMMAFLLLFA 118
++A LLLFA
Sbjct: 65 FLIALLLLFA 74
>gnl|CDD|235949 PRK07159, PRK07159, F0F1 ATP synthase subunit C; Validated.
Length = 100
Score = 54.1 bits (130), Expect = 7e-11
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 11 ITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIG 70
+ S F Q TQ + + A +IGAG A +GV G G G G
Sbjct: 1 VNSIVNFVGQILQNTQTV---------SQKVAADSSGLKAAYIGAGLAMIGVIGVGLGQG 51
Query: 71 SVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 117
FG + ARNP ++Q+F +G A+SE +++L++AF+L+F
Sbjct: 52 YAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIF 98
>gnl|CDD|215743 pfam00137, ATP-synt_C, ATP synthase subunit C.
Length = 66
Score = 50.1 bits (121), Expect = 1e-09
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 50 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFS 108
+GAG A + G+G GIG + I ARNP L F ++G AL+EA+ ++
Sbjct: 1 LAALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPEL----FGKMLIGAALAEALAIYG 56
Query: 109 LMMAFLLLFA 118
L++A LLLFA
Sbjct: 57 LVIALLLLFA 66
>gnl|CDD|223709 COG0636, AtpE, F0F1-type ATP synthase, subunit
c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy
production and conversion].
Length = 79
Score = 48.0 bits (115), Expect = 1e-08
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 48 SAAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGL 106
IGAG A + G+G G G + + + AR P +LF +G AL EA+G+
Sbjct: 6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGI 65
Query: 107 FSLMMAFLLLFAF 119
+ L++A LLLFA
Sbjct: 66 YGLVIALLLLFAN 78
>gnl|CDD|184068 PRK13469, PRK13469, F0F1 ATP synthase subunit C; Provisional.
Length = 79
Score = 47.7 bits (114), Expect = 1e-08
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 43 SRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSE 102
+ IGAG A + G+G GIG G + R P ++ S +LG AL+E
Sbjct: 3 GKAFVMGMSAIGAGIAALAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAE 62
Query: 103 AMGLFSLMMAFLLLFA 118
A ++ L++A +LLF
Sbjct: 63 ATAIYGLVIAIILLFV 78
>gnl|CDD|184069 PRK13471, PRK13471, F0F1 ATP synthase subunit C; Provisional.
Length = 85
Score = 41.0 bits (96), Expect = 6e-06
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 49 AAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 107
K+IGAG +G G G G G++ + AR P + + + +L A++E G++
Sbjct: 14 LGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIY 73
Query: 108 SLMMAFLLLFA 118
SL++AFL+L
Sbjct: 74 SLLIAFLILLV 84
>gnl|CDD|169138 PRK07874, PRK07874, F0F1 ATP synthase subunit C; Validated.
Length = 80
Score = 40.2 bits (94), Expect = 1e-05
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 47 DSAAKFIGAGAATVGVA--GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAM 104
+ F G GA G+A G G G+G V G + G AR P + QL + LG A EA+
Sbjct: 10 ATETTFTGLGAVGYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEAL 69
Query: 105 GLFSLMMAFLL 115
L L+ FL
Sbjct: 70 ALIGLVAGFLF 80
>gnl|CDD|177001 CHL00061, atpH, ATP synthase CF0 C subunit.
Length = 81
Score = 35.1 bits (81), Expect = 0.001
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 46 IDSAAKFIGAGAATVGVAGSGAGIG--SVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 103
+ SAA I AG A VG+A G G+G + G + G AR P + ++ +L A EA
Sbjct: 4 LISAASVIAAGLA-VGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEA 62
Query: 104 MGLFSLMMAFLLLFA 118
+ ++ L++A LLFA
Sbjct: 63 LTIYGLVVALALLFA 77
>gnl|CDD|130327 TIGR01260, ATP_synt_c, ATP synthase, F0 subunit c. This model
describes the subunit c in F1/F0-ATP synthase, a
membrane associated multisubunit complex found in
bacteria and organelles of higher eukaryotes, namely,
mitochondria and chloroplast. This enzyme is principally
involved in the synthesis of ATP from ADP and inorganic
phosphate by coupling the energy derived from the proton
electrochemical gradient across the biological membrane.
A brief description of this multisubunit enzyme complex:
F1 and F0 represent two major clusters of subunits. The
functional role of subunit c, which is the part of F0
cluster, has been delineated in-vitro reconstitution
experiments. Overall experimental proof exists that
demonstrate the electrochemical gradient is converted
into a rotational torque that leads to ATP synthesis
[Energy metabolism, ATP-proton motive force
interconversion].
Length = 58
Score = 33.9 bits (78), Expect = 0.002
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 64 GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118
G+ GIG + G + AR P LK L + +G L +A+ + ++++A +LLFA
Sbjct: 4 GAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLFA 58
>gnl|CDD|180739 PRK06876, PRK06876, F0F1 ATP synthase subunit C; Validated.
Length = 78
Score = 32.6 bits (75), Expect = 0.008
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 49 AAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 107
I A A + G+ GIG + G + G AR P L L + +G L +A+ +
Sbjct: 6 GLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPII 65
Query: 108 SLMMAFLLLFA 118
+ +A L LFA
Sbjct: 66 GVGIALLFLFA 76
>gnl|CDD|180942 PRK07354, PRK07354, F0F1 ATP synthase subunit C; Validated.
Length = 81
Score = 31.7 bits (72), Expect = 0.020
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 103
I SAA + A A + G G G G+ G + G AR P + ++ +L A E+
Sbjct: 3 SITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMES 62
Query: 104 MGLFSLMMAFLLLFA 118
+ ++ L++A +LLFA
Sbjct: 63 LTIYGLVVALVLLFA 77
>gnl|CDD|180303 PRK05880, PRK05880, F0F1 ATP synthase subunit C; Validated.
Length = 81
Score = 31.3 bits (71), Expect = 0.032
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 48 SAAKFIGAGAATVGVA-GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGL 106
+A IG G G A G+G G G +LI G AR P + +LF+ + L EA
Sbjct: 6 AAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYF 65
Query: 107 FSLMMAFLLLFAF 119
+L AF+ LF F
Sbjct: 66 INL--AFMALFVF 76
>gnl|CDD|181444 PRK08482, PRK08482, F0F1 ATP synthase subunit C; Validated.
Length = 105
Score = 30.1 bits (68), Expect = 0.10
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 49 AAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFS 108
A IG G A +G A G+G+ + I G ARNP L +L + + A+ EA +++
Sbjct: 34 LAAGIGLGIAALGGA---IGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYA 90
Query: 109 LMMAFLLLFA 118
L++A + L+A
Sbjct: 91 LVIALIALYA 100
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 30.6 bits (70), Expect = 0.14
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 26 QQISILPAVRQFQTSAV-SRDIDSAAKFIGA-----GAATVGVAGSGAGIGSVFG 74
+ I+ V Q +S++ + D+ +A +++G G V + SGA IG FG
Sbjct: 390 EAIAWNNEVPQGLSSSIFTTDLRNAFRWLGPKGSDCGIVNVNIGTSGAEIGGAFG 444
>gnl|CDD|172066 PRK13466, PRK13466, F0F1 ATP synthase subunit C; Provisional.
Length = 66
Score = 28.0 bits (62), Expect = 0.42
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 56 GAATVGVAGSGAGIGS--VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAF 113
GA +G+A G IG + S + AR P ++ +L + LG A E +L M F
Sbjct: 4 GALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTF 63
Query: 114 LL 115
+L
Sbjct: 64 VL 65
>gnl|CDD|180501 PRK06271, PRK06271, V-type ATP synthase subunit K; Validated.
Length = 213
Score = 29.0 bits (65), Expect = 0.51
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 53 IGAGAATVGVAGSGAGIGS-VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMM 111
IGAG A VG+AG G+GIG+ + G+ G K F AI+ AL + GL+ ++
Sbjct: 3 IGAGLA-VGIAGLGSGIGAGITGASGAGVVAEDPNK---FGTAIVFQALPQTQGLYGFLV 58
Query: 112 AFLLLFAF 119
A L+LF F
Sbjct: 59 AILILFVF 66
>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related
proteins of the D-specific 2-hydroxy dehydrogenase
family. This group contains a variety of proteins
variously identified as glycerate dehydrogenase (GDH,
aka Hydroxypyruvate Reductase) and other enzymes of the
2-hydroxyacid dehydrogenase family. GDH catalyzes the
reversible reaction of (R)-glycerate + NAD+ to
hydroxypyruvate + NADH + H+. 2-hydroxyacid
dehydrogenases catalyze the conversion of a wide variety
of D-2-hydroxy acids to their corresponding keto acids.
The general mechanism is (R)-lactate + acceptor to
pyruvate + reduced acceptor. Formate/glycerate and
related dehydrogenases of the D-specific 2-hydroxyacid
dehydrogenase superfamily include groups such as formate
dehydrogenase, glycerate dehydrogenase, L-alanine
dehydrogenase, and S-adenosylhomocysteine hydrolase.
Despite often low sequence identity, these proteins
typically have a characteristic arrangement of 2 similar
subdomains of the alpha/beta Rossmann-fold NAD+ binding
form. The NAD+ binding domain is inserted within the
linear sequence of the mostly N-terminal catalytic
domain, which has a similar domain structure to the
internal NAD binding domain. Structurally, these domains
are connected by extended alpha helices and create a
cleft in which NAD is bound, primarily to the C-terminal
portion of the 2nd (internal) domain. Some related
proteins have similar structural subdomain but with a
tandem arrangement of the catalytic and NAD-binding
subdomains in the linear sequence. While many members of
this family are dimeric, alanine DH is hexameric and
phosphoglycerate DH is tetrameric.
Length = 315
Score = 28.7 bits (65), Expect = 0.72
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 59 TVGVAGSG------AGIGSVFGSLIIGYARNPS 85
TVG+ G+G A + FG ++ Y+R+
Sbjct: 146 TVGIVGTGAIGLRVARLFKAFGCKVLAYSRSEK 178
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 28.3 bits (64), Expect = 0.85
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 26 QQISILPAVRQFQTSAV-SRDIDSAAKFIG-----AGAATVGVAGSGAGIGSVFG 74
+ I+I V Q +S++ + D+ A +++G G V + SGA IG FG
Sbjct: 394 EAIAINNDVPQGLSSSIFTEDLREAFRWLGPKGSDCGIVNVNIPTSGAEIGGAFG 448
>gnl|CDD|184065 PRK13464, PRK13464, F0F1 ATP synthase subunit C; Provisional.
Length = 101
Score = 26.5 bits (58), Expect = 2.0
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 64 GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118
G+ G G + G + G AR P L L + A +A S+ + FL+L+A
Sbjct: 29 GTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYA 83
>gnl|CDD|177239 MTH00191, CYTB, cytochrome b; Provisional.
Length = 365
Score = 26.8 bits (60), Expect = 2.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 90 LFSYAILGFALSEAMGLFSLMMAFLLLFAF 119
LF+YAIL ++ G+ +L+M+ L+LF
Sbjct: 272 LFAYAILRSIPNKLGGVLALVMSILVLFLL 301
>gnl|CDD|200943 pfam00032, Cytochrom_B_C, Cytochrome b(C-terminal)/b6/petD.
Length = 102
Score = 25.9 bits (58), Expect = 3.4
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 90 LFSYAILGFALSEAMGLFSLMMAFLLLFAF 119
LF+YAIL ++ G+ +++++ L+LF
Sbjct: 18 LFAYAILRSIPNKLGGVIAMVLSILILFLL 47
>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 359
Score = 26.3 bits (59), Expect = 4.0
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 43 SRDIDSAAKFIGAGAATVGVAGS-GAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALS 101
SR++++AA + S + + +L + ++ L
Sbjct: 30 SRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDV--LSLFLLLLL 87
Query: 102 EAMGLFSLMMAFLLLFAF 119
EA+ ++ L+L A
Sbjct: 88 EALLALLPILLLLVLAAL 105
>gnl|CDD|106966 PHA00657, PHA00657, crystallin beta/gamma motif-containing protein.
Length = 2052
Score = 26.7 bits (58), Expect = 4.1
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 1 MTAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTS--AVSRDIDSAAKFIGAGA 57
+ MR + +IT+ TQ+ QQ +L + Q + ++RD D+ +F+ A
Sbjct: 369 VAVMRGIDRTITTADQRTQRAQAAQQQAELLARLNQLAAADKVLARDPDTFEQFVANAA 427
>gnl|CDD|238179 cd00290, cytochrome_b_C, Cytochrome b(C-terminus)/b6/petD:
Cytochrome b is a subunit of cytochrome bc1, an
11-subunit mitochondrial respiratory enzyme. Cytochrome
b spans the mitochondrial membrane with 8 transmembrane
helices (A-H) in eukaryotes. In plants and
cyanobacteria, cytochrome b6 is analogous to eukaryote
cytochrome b, containing two chains: helices A-D are
encoded by the petB gene and helices E-H are encoded by
the petD gene in these organisms. Cytochrome b/b6
contains two bound hemes and two ubiquinol/ubiquinone
binding sites. The C-terminal domain is involved in
forming the ubiquinol/ubiquinone binding sites, but not
the heme binding sites. The N-terminal portion of
cytochrome b, which contains both heme binding sites,
is described in a separate CD.
Length = 147
Score = 25.7 bits (57), Expect = 5.3
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 90 LFSYAILGFALSEAMGLFSLMMAFLLLFAF 119
L YAIL ++ +G+ ++ + L LF
Sbjct: 69 LPVYAILRAIPNKLLGVLAMAASILSLFLV 98
>gnl|CDD|237460 PRK13656, PRK13656, trans-2-enoyl-CoA reductase; Provisional.
Length = 398
Score = 26.0 bits (58), Expect = 5.3
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 49 AAKFIGAGAATVGV----AGSGAGIGS 71
AA F GAGA T+GV G+ G+
Sbjct: 60 AAAF-GAGADTLGVFFEKPGTEKKTGT 85
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 26.2 bits (57), Expect = 5.4
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 8 SSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFI---GAGAATVGVAG 64
S S T S T TTP + S +AV+R DS + I GA A G G
Sbjct: 276 SPSTTRPSGSTTTTTPASSGPSAPGGPGSSSRNAVTRSTDSISGPIPSPGAPRAITGQMG 335
Query: 65 SGA 67
Sbjct: 336 ERE 338
>gnl|CDD|223721 COG0648, Nfo, Endonuclease IV [DNA replication, recombination, and
repair].
Length = 280
Score = 26.1 bits (58), Expect = 5.8
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 42 VSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSL 76
++ ++ + G AG G+G G+ FG L
Sbjct: 123 IAEALNELLEEEGVIILLENTAGEGSGKGTQFGEL 157
>gnl|CDD|204181 pfam09251, PhageP22-tail, Salmonella phage P22 tail-spike.
Members of this family of viral domains adopt a
structure consisting of a single-stranded right-handed
beta-helix, which in turn is made of parallel
beta-strands and short turns. They are required for
recognition of the 0-antigenic repeating units of the
cell surface, and for subsequent infection of the
bacterial cell.
Length = 549
Score = 25.9 bits (57), Expect = 7.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 46 IDSAAKFIGAGAATVGVAGSGAGIGSVF 73
ID AKFIG G G G+ + F
Sbjct: 54 IDCKAKFIGDGNLIFTNLGKGSVVNQPF 81
>gnl|CDD|237390 PRK13467, PRK13467, F0F1 ATP synthase subunit C; Provisional.
Length = 66
Score = 24.4 bits (53), Expect = 7.9
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 51 KFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLM 110
+ A +GV+ G G + +L AR P + QL S ILG A E +L+
Sbjct: 4 TILALALACMGVS---LGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLV 60
Query: 111 MAFLL 115
M+F+L
Sbjct: 61 MSFIL 65
>gnl|CDD|233410 TIGR01430, aden_deam, adenosine deaminase. This family includes
the experimentally verified adenosine deaminases of
mammals and E. coli. Other members of this family are
predicted also to be adenosine deaminase, an enzyme of
nucleotide degradation. This family is distantly related
to AMP deaminase.
Length = 324
Score = 25.4 bits (56), Expect = 8.5
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 29 SILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGS 65
IL +R Q A ++ A + G+AG
Sbjct: 129 LILCGMRHKQPEAAEETLELAKPYKEQTIVGFGLAGD 165
>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional.
Length = 542
Score = 25.4 bits (56), Expect = 8.5
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 24 QTQQISILPAVRQFQTSAVSRD-IDSAAKFIGAGAATVGVAGSGA 67
Q ++ P +R A D I +AA I A + G GA
Sbjct: 172 QRAPVAAAPPLRPAPPPAPDPDAIAAAAALIAAAKNPMIFVGGGA 216
>gnl|CDD|213771 TIGR03076, near_not_gcvH, Chlamydial GcvH-like protein upstream
region protein. The H protein (GcvH) of the glycine
cleavage system shuttles the methylamine group of
glycine from the P protein to the T protein. Most
Chlamydia but lack the P and T proteins, and have a
single homolog of GcvH that appears deeply split from
canonical GcvH in molecular phylogenetic trees. The
protein family modeled here is observed so far only in
the Chlamydiae, always as part of a two-gene operon,
upstream of the homolog of GcvH. Its function is
unknown [Unknown function, General].
Length = 686
Score = 25.6 bits (56), Expect = 9.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 51 KFIGAGAATVGVAGSGAGIGSVFG 74
KFIG A V V+G G G G F
Sbjct: 10 KFIGLVIAGVCVSGIGVGWGRTFK 33
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 25.6 bits (56), Expect = 9.1
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 54 GAGAATVGVAGSGAGIGSVFGSLIIGYAR 82
G GA G AG G G+G VFG L R
Sbjct: 104 GGGAQGGGGAGGGGGLGDVFGGLFNRGGR 132
>gnl|CDD|238645 cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc
dependent enzyme which catalyzes the irreversible
hydrolytic deamination of both adenosine, as well as
desoxyadenosine, to ammonia and inosine or
desoxyinosine, respectively. ADA plays an important role
in the purine pathway. Low, as well as high levels of
ADA activity have been linked to several diseases.
Length = 325
Score = 25.2 bits (56), Expect = 9.4
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 29 SILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGS 65
IL +R + ++ A K+ G +AG
Sbjct: 130 LILCGLRHLSPESAQETLELALKYRDKGVVGFDLAGD 166
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.132 0.356
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,906,795
Number of extensions: 532458
Number of successful extensions: 1488
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1454
Number of HSP's successfully gapped: 176
Length of query: 119
Length of database: 10,937,602
Length adjustment: 82
Effective length of query: 37
Effective length of database: 7,300,574
Effective search space: 270121238
Effective search space used: 270121238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.2 bits)