RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3709
(119 letters)
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP
phosphorylase (H+ transporting), ATP synthesis, F1FO ATP
synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos
taurus}
Length = 72
Score = 99.8 bits (249), Expect = 3e-29
Identities = 67/72 (93%), Positives = 71/72 (98%)
Query: 46 IDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG 105
ID+AAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG
Sbjct: 1 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG 60
Query: 106 LFSLMMAFLLLF 117
LF LM+AFL+LF
Sbjct: 61 LFCLMVAFLILF 72
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase,
oligomycin, membr protein-antibiotic complex; HET: FME
EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J*
2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Length = 76
Score = 93.7 bits (233), Expect = 8e-27
Identities = 44/74 (59%), Positives = 56/74 (75%)
Query: 45 DIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAM 104
+ AAK+IGAG +T+G+ G+G GI VF +LI G +RNPS+K +F AILGFALSEA
Sbjct: 2 QLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEAT 61
Query: 105 GLFSLMMAFLLLFA 118
GLF LM++FLLLF
Sbjct: 62 GLFCLMVSFLLLFG 75
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase
rotor, sodium-motive force, cell inner membrane, CF(0),
membrane, transport; HET: F09; 2.35A {Ilyobacter
tartaricus} PDB: 1yce_A*
Length = 89
Score = 79.3 bits (196), Expect = 6e-21
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 43 SRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSE 102
++ + AA +GAG A + G G G G G + AR P K + S +LG A++E
Sbjct: 6 AKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAE 65
Query: 103 AMGLFSLMMAFLLLFA 118
+ G++SL++A +LL+A
Sbjct: 66 STGIYSLVIALILLYA 81
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase
rotor, ION (PROT translocation; HET: FME CVM; 1.84A
{Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A*
2w5j_A
Length = 82
Score = 49.3 bits (118), Expect = 2e-09
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 45 DIDSAAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 103
++ +AA I A A +G G G G G G + G AR P + ++ +L A EA
Sbjct: 4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEA 63
Query: 104 MGLFSLMMAFLLLFA 118
+ ++ L++A +LLFA
Sbjct: 64 LTIYGLVVALVLLFA 78
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION
transport, hydrolase; NMR {Bacillus SP}
Length = 72
Score = 42.7 bits (101), Expect = 6e-07
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 49 AAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 107
+ + A A +G G+G G G + I G AR P L+ L + +G AL EA+ +
Sbjct: 2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPII 61
Query: 108 SLMMAFLLLF 117
++ +F+ L
Sbjct: 62 GVVFSFIYLG 71
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP
synthesis, transmembran CF(0), membrane, transport,
C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus
OF4}
Length = 69
Score = 40.5 bits (95), Expect = 4e-06
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 51 KFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSL 109
F+GA AA + + + + I G R P L+ L + +G L+EA+ + ++
Sbjct: 2 AFLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAI 61
Query: 110 MMAFLLLF 117
+++ L+LF
Sbjct: 62 VISLLILF 69
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport;
NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A
1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Length = 79
Score = 35.6 bits (82), Expect = 4e-04
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 45 DIDSAAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 103
+++ ++ A + G+ GIG + G + G AR P L L + + L +A
Sbjct: 3 NLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDA 62
Query: 104 MGLFSLMMAFLLLFAF 119
+ + ++ + ++FA
Sbjct: 63 IPMIAVGLGLYVMFAV 78
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.27
Identities = 6/39 (15%), Positives = 8/39 (20%), Gaps = 5/39 (12%)
Query: 71 SVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSL 109
V L + SL + E L
Sbjct: 276 QVTDFLSAATTTHISLDHHS-----MTLTPDEVKSLLLK 309
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 0.34
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 20/87 (22%)
Query: 39 TSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYA-------RNPSLKQQL- 90
TS S +D + I +G A + + G G + +
Sbjct: 1108 TSVES--VDIGVETILSGKARICIVG---GYDDFQEEGSFEFGNMKATSNTLEEFEHGRT 1162
Query: 91 -------FSYAILGFALSEAMGLFSLM 110
+ GF ++ G+ +M
Sbjct: 1163 PAEMSRPATTTRNGFMEAQGAGIQIIM 1189
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 27.0 bits (60), Expect = 1.3
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 39 TSAVSRDIDSAAKFIGAGAATVGVAGSGAGI 69
T++ + A + + + GAGI
Sbjct: 1 TASTEMSVRKIAAHMKSNPNAKVIFMVGAGI 31
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring,
membrane rotor, sodium transporter, H ION transport,
hydrolase, transmembrane; HET: LHG UMQ; 2.1A
{Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Length = 156
Score = 26.4 bits (58), Expect = 2.3
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 64 GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 117
SG G V + I A+ P + I+ A+ E + +++FLL+
Sbjct: 105 FSGIAQGKVAAAGIQILAKKPEH----ATKGIIFAAMVETYAILGFVISFLLVL 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 2.9
Identities = 23/110 (20%), Positives = 33/110 (30%), Gaps = 49/110 (44%)
Query: 11 ITSTSAFTQQTTPQTQQISILPAVRQFQTS-AVSRDIDSAAKFIGAGAATVGVAGSGAGI 69
+++T FTQ PA+ A D+ S I A A AG
Sbjct: 1726 LSAT-QFTQ------------PAL--TLMEKAAFEDLKSKG-LIPADAT---FAGH---- 1762
Query: 70 GSVFGSLIIG-YARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118
SL G YA AL+ + S+ ++F
Sbjct: 1763 -----SL--GEYA-----------------ALASLADVMSIESLVEVVFY 1788
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET:
ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Length = 169
Score = 24.4 bits (54), Expect = 9.2
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 72 VFGSLIIGYARNPSLKQQLFS 92
+F + + N S K+ LFS
Sbjct: 28 IFEQVYVCVLNNSS-KKPLFS 47
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO
pathway; 2.30A {Enterococcus faecalis} PDB: 3nd6_A*
3nd7_A*
Length = 171
Score = 24.4 bits (54), Expect = 10.0
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 72 VFGSLIIGYARNPSLKQQLFS 92
+F +IIG N S KQ LF+
Sbjct: 28 LFDEVIIGVFINTS-KQTLFT 47
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO
pathway, coenzyme A biosynthesis,
nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus
aureus}
Length = 168
Score = 24.4 bits (54), Expect = 10.0
Identities = 5/21 (23%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 72 VFGSLIIGYARNPSLKQQLFS 92
F + + +N K+ FS
Sbjct: 29 RFDEIHVCVLKNSK-KEGTFS 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.132 0.356
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,612,871
Number of extensions: 88247
Number of successful extensions: 372
Number of sequences better than 10.0: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 41
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.6 bits)