RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3709
         (119 letters)



>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli
           [TaxId: 562]}
          Length = 79

 Score = 58.8 bits (143), Expect = 2e-13
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 45  DIDSAAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 103
           +++    ++ A     +   G+  GIG + G  + G AR P L   L +   +   L +A
Sbjct: 3   NLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDA 62

Query: 104 MGLFSLMMAFLLLFAF 119
           + + ++ +   ++FA 
Sbjct: 63  IPMIAVGLGLYVMFAV 78


>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 323

 Score = 27.0 bits (59), Expect = 0.65
 Identities = 5/27 (18%), Positives = 12/27 (44%)

Query: 43 SRDIDSAAKFIGAGAATVGVAGSGAGI 69
             ++  A+++ +      +   GAGI
Sbjct: 28 ELTLEGVARYMQSERCRRVICLVGAGI 54


>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 289

 Score = 25.2 bits (54), Expect = 2.3
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 39 TSAVSRDIDSAAKFIGAGAATVGVAGSGAGI 69
          T++    +   A  + +      +   GAGI
Sbjct: 1  TASTEMSVRKIAAHMKSNPNAKVIFMVGAGI 31


>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit,
           C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 119

 Score = 24.0 bits (52), Expect = 4.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 90  LFSYAILGFALSEAMGLFSLMMAFLLLFAF 119
           LF+YAIL    ++  G+ +L  + L+L   
Sbjct: 15  LFAYAILRSIPNKLGGVLALAFSILILALI 44


>d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal
          domain {Escherichia coli [TaxId: 562]}
          Length = 273

 Score = 24.2 bits (52), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 47 DSAAKFIGAGAATVGVAGSGAGIG 70
            A  +I   A T+ V G+G GI 
Sbjct: 16 QEAVNYIPDEA-TLCVLGAGGGIL 38


>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit,
           C-terminal domain {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 124

 Score = 23.3 bits (50), Expect = 6.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 90  LFSYAILGFALSEAMGLFSLMMAFLLLFAF 119
           L  YAIL     + +G+ ++  A L+L   
Sbjct: 15  LPFYAILRSIPDKLLGVITMFAAILVLLVL 44


>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22
          [TaxId: 10754]}
          Length = 554

 Score = 23.8 bits (51), Expect = 6.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 46 IDSAAKFIGAGAATVGVAGSGAGIGSVF 73
          I+  AKFIG G       G G+ I  VF
Sbjct: 55 IECKAKFIGDGNLIFTKLGKGSRIAGVF 82


>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671
          {Streptomyces avermitilis [TaxId: 33903]}
          Length = 153

 Score = 23.3 bits (49), Expect = 8.4
 Identities = 6/31 (19%), Positives = 11/31 (35%)

Query: 22 TPQTQQISILPAVRQFQTSAVSRDIDSAAKF 52
          TP T    +  A   F  +    D ++ +  
Sbjct: 1  TPDTDVEQVGLANTAFYEAMERGDFETLSSL 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.132    0.356 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 356,272
Number of extensions: 13634
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 14
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.2 bits)