BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3710
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 111/403 (27%), Positives = 160/403 (39%), Gaps = 103/403 (25%)
Query: 11 NGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVG 70
N ++ FNQDQ C F IYN PLK Q+ D G + ML R NY+A V
Sbjct: 15 NPIVDYEFNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEMPDAGT--IRMLHRTNYIAFVS 72
Query: 71 GGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQ 130
+ IWDD+KKQ + ++ +A VK + L R+ IVV +I ++ F
Sbjct: 73 TKKELLH------IWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNPWN 126
Query: 131 QLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS-GHVHLVDL-ADPER---PPLDIAAHE 185
++ + G+C N LL + + G +H+ L D E+ + + AH
Sbjct: 127 KI---TEDIKFGGVCEFA----NGLLVYSNEFNLGQIHVTRLQTDAEQVVGKGVLVKAHA 179
Query: 186 APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGR 245
P+ + LN+ G +AT S GTLIRVF T +G + E RRGL R
Sbjct: 180 NPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGL---------------DR 224
Query: 246 KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL 305
S + D P G++LA S K TL
Sbjct: 225 TS-------IIDMRWSP-----------------DGSKLAVVSDKWTL------------ 248
Query: 306 NELRRDSSYLCVSSDHGTVHVFSV-DEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPS 364
HVF V ++A+ NK+ L + KYF S WS C F++
Sbjct: 249 -------------------HVFEVFNDAE--NKRHVLKDWINI-KYFQSEWSICNFKLKV 286
Query: 365 DP---PCICAFGADSNSIIVI----CADGSYYKFMFNSKGECW 400
C A+ +D+ +IV AD +K +N W
Sbjct: 287 SKGSNDCKIAWISDTGLVIVWPNRRLADT--FKLNYNDDEHVW 327
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 155/404 (38%), Gaps = 108/404 (26%)
Query: 18 FNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKY 77
FNQDQ C F IYN P+ Q+ L V ML R NY+A V G
Sbjct: 27 FNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRH--LSKVRMLHRTNYVAFVTG------ 78
Query: 78 PNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFET 137
V IWDD+KKQ V ++ +APVK + L R+ IVV +I V+ F +++
Sbjct: 79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRI---TD 135
Query: 138 NPNPKGLCVLCPNSNNSLLAFPGRKS-GHVHLVDLADPERPPLD---------------I 181
+ G+C +N LL + + G +H+ L I
Sbjct: 136 DIRFGGVCEF----SNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI 191
Query: 182 AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLA 241
AH P+ + LN+ +AT S GT+IRVF T G + E RRGL
Sbjct: 192 KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL------------- 238
Query: 242 FPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 301
D AD + + + G++LA S K TL
Sbjct: 239 ------------DRAD--------------VVDMKWSTDGSKLAVVSDKWTL-------- 264
Query: 302 GQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQ 361
HVF + Q NK+ +L + KYF S WS C F+
Sbjct: 265 -----------------------HVFEIFNDQD-NKRHALKGWINM-KYFQSEWSLCNFK 299
Query: 362 IPSDPP---CICAFGADSNSIIVI--CADGSYYKFMFNSKGECW 400
+ D C A+ ++S+ ++V +K +F+ + E W
Sbjct: 300 LSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEMERW 343
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 115
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 116 NLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 173
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 174 TASGQCLKTLIDD 186
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315
I+ H+ +S +A + L +AS TL +++D SG+ L L+ S+Y+
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYV 106
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 123 NLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 180
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 181 TASGQCLKTLIDD 193
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315
I+ H+ +S +A + L +AS TL +++D SG+ L L+ S+Y+
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYV 113
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 123 NLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 180
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 181 TASGQCLKTLIDD 193
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315
I+ H+ +S +A + L +AS TL +++D SG+ L L+ S+Y+
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYV 113
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 123 NLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 180
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 181 TASGQCLKTLIDD 193
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315
I+ H+ +S +A + L +AS TL +++D SG+ L L+ S+Y+
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYV 113
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 119
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 120 NLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 177
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 178 TASGQCLKTLIDD 190
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315
I+ H+ +S +A + L +AS TL +++D SG+ L L+ S+Y+
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYV 110
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 118
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 119 NLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 176
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 177 TASGQCLKTLIDD 189
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315
I+ H+ +S +A + L +AS TL +++D SG+ L L+ S+Y+
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYV 109
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 119
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 120 NLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 177
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 178 TASGQCLKTLIDD 190
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315
I+ H+ +S +A + L +AS TL +++D SG+ L L+ S+Y+
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYV 110
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 125
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 126 NLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 183
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 184 TASGQCLKTLIDD 196
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315
I+ H+ +S +A + L +AS TL +++D SG+ L L+ S+Y+
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYV 116
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 136
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 137 NLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 194
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 195 TASGQCLKTLIDD 207
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315
I+ H+ +S +A + L +AS TL +++D SG+ L L+ S+Y+
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYV 127
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 120
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 121 NLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 178
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 179 TASGQCLKTLIDD 191
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315
I+ H+ +S +A + L +AS TL +++D SG+ L L+ S+Y+
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYV 111
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 125
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 126 NLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 183
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 184 TASGQCLKTLIDD 196
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315
I+ H+ +S +A + L +AS TL +++D SG+ L L+ S+Y+
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYV 116
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 124
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 125 NLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 182
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 183 TASGQCLKTLIDD 195
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315
I+ H+ +S +A + L +AS TL +++D SG+ L L+ S+Y+
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYV 115
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 125
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 126 NLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 183
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 184 TASGQCLKTLIDD 196
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315
I+ H+ +S +A + L +AS TL +++D SG+ L L+ S+Y+
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYV 116
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 141
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 142 NLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 199
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 200 TASGQCLKTLIDD 212
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 180
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 181 TASGQCLKTLIDD 193
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315
I+ H+ +S +A + L +AS TL +++D SG+ L L+ S+Y+
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYV 113
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 143
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 144 NLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 201
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 202 TASGQCLKTLIDD 214
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCVLCPNSN-NS 238
I+ H+ +S +A + L +AS TL +++D SG+ L L+ V C N N S
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
L G V + D+ + AH P+S + N+ G+ + ++SY G L R++D
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 180
Query: 299 TGSGQKLNELRRD 311
T SGQ L L D
Sbjct: 181 TASGQCLKTLIDD 193
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315
I+ H+ +S +A + L +AS TL +++D SG+ L L+ S+Y+
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKGHSNYV 113
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 63/160 (39%), Gaps = 15/160 (9%)
Query: 147 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK 206
L NS N+ + G V L DL R HE ++ + G R T S
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270
Query: 207 GTLIRVFDTGSGQKLNELRRG---------LCVLCPNSNNSLLAFPGRKSGHVHLVDLAD 257
GT R+FD +G +L R + S + L F G +G ++ D
Sbjct: 271 GT-CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329
Query: 258 PERPPLDIA----AHEAPLSCIALNQTGTRLATASYKGTL 293
E L++ +HE +SC+ L+ G+ L T S+ L
Sbjct: 330 AEMV-LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL 368
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 184 HEAPLSCIALNQTGTRLATASYK----------GTLIRVFD---TGSGQKLNELRRG--- 227
H AP+ + N+ GT + + + GT+++ F+ TG E G
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207
Query: 228 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA 287
L V ++ PG K G + + + + + P + H P+S + N T L +A
Sbjct: 208 LGVDVEWVDDDKFVIPGPK-GAIFVYQITE-KTPTGKLIGHHGPISVLEFNDTNKLLLSA 265
Query: 288 SYKGTLIRVFDTGSGQKLN 306
S GTL R++ G+G N
Sbjct: 266 SDDGTL-RIWHGGNGNSQN 283
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 61/158 (38%), Gaps = 17/158 (10%)
Query: 79 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVV---LEGLIKVYTFIQCPQQLHV- 134
N + +W+ + + AP+ V+ +D ++ +E + ++ I H
Sbjct: 129 NGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE 188
Query: 135 ----------FETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAH 184
E + L V ++ PG K G + + + + + P + H
Sbjct: 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-GAIFVYQITE-KTPTGKLIGH 246
Query: 185 EAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN 222
P+S + N T L +AS GTL R++ G+G N
Sbjct: 247 HGPISVLEFNDTNKLLLSASDDGTL-RIWHGGNGNSQN 283
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 172 ADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL----RRG 227
A+ LDI AHE + C A + + +AT S ++++D+ +G+ ++ +
Sbjct: 644 AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK-VKIWDSATGKLVHTYDEHSEQV 702
Query: 228 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE-RPPLDIAAHEAPLSCIALNQTGTRLAT 286
C N +N LL G + L DL E R + H ++ + LA+
Sbjct: 703 NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM--FGHTNSVNHCRFSPDDELLAS 760
Query: 287 ASYKGTLIRVFDTGSGQK 304
S GTL R++D S +
Sbjct: 761 CSADGTL-RLWDVRSANE 777
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 172 ADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL----RRG 227
A+ LDI AHE + C A + + +AT S ++++D+ +G+ ++ +
Sbjct: 651 AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK-VKIWDSATGKLVHTYDEHSEQV 709
Query: 228 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE-RPPLDIAAHEAPLSCIALNQTGTRLAT 286
C N +N LL G + L DL E R + H ++ + LA+
Sbjct: 710 NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM--FGHTNSVNHCRFSPDDELLAS 767
Query: 287 ASYKGTLIRVFDTGSGQK 304
S GTL R++D S +
Sbjct: 768 CSADGTL-RLWDVRSANE 784
>pdb|1TVI|A Chain A, Solution Structure Of Tm1509 From Thermotoga Maritima:
Vt1, A Nesgc Target Protein
Length = 172
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 289 YKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHV----FSVDEAQKINKQ 338
++G +IR+ G G KL E ++ V + G VHV S DE +++N+Q
Sbjct: 19 FQGHMIRILGEGKGSKLLENLKEKLEEIVKKEIGDVHVNVILVSEDEIKELNQQ 72
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 188 LSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKS 247
+S +A + G LA + ++++D ++L + + S NS + G +S
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAE-VQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRS 128
Query: 248 GHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ 303
GH+H D+ E ++ H + + G LA+ L+ V+ + G+
Sbjct: 129 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG-NDNLVNVWPSAPGE 183
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 188 LSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKS 247
+S +A + G LA + ++++D ++L + + S NS + G +S
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAE-VQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRS 208
Query: 248 GHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ 303
GH+H D+ E ++ H + + G LA+ L+ V+ + G+
Sbjct: 209 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG-NDNLVNVWPSAPGE 263
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 188 LSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKS 247
+S +A + G LA + ++++D ++L + + S NS + G +S
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAE-VQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRS 219
Query: 248 GHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ 303
GH+H D+ E ++ H + + G LA+ L+ V+ + G+
Sbjct: 220 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG-NDNLVNVWPSAPGE 274
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 183 AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL-----NELRRGLCVLCPNSNN 237
HE+ ++ I G AT S T R+FD + Q+L + + G+ + + +
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 238 SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTL 293
LL G + ++ D +R + +A H+ +SC+ + G +AT S+ L
Sbjct: 283 RLL-LAGYDDFNCNVWDALKADRAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 183 AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL-----NELRRGLCVLCPNSNN 237
HE+ ++ I G AT S T R+FD + Q+L + + G+ + + +
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 238 SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTL 293
LL G + ++ D +R + +A H+ +SC+ + G +AT S+ L
Sbjct: 283 RLL-LAGYDDFNCNVWDALKADRAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 183 AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL-----NELRRGLCVLCPNSNN 237
HE+ ++ I G AT S T R+FD + Q+L + + G+ + + +
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 238 SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTL 293
LL G + ++ D +R + +A H+ +SC+ + G +AT S+ L
Sbjct: 283 RLL-LAGYDDFNCNVWDALKADRAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 183 AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL-----NELRRGLCVLCPNSNN 237
HE+ ++ I G AT S T R+FD + Q+L + + G+ + + +
Sbjct: 235 GHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFSKSG 293
Query: 238 SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTL 293
LL G + ++ D +R + +A H+ +SC+ + G +AT S+ L
Sbjct: 294 RLL-LAGYDDFNCNVWDALKADRAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFL 347
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 183 AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL-----NELRRGLCVLCPNSNN 237
HE+ ++ I G AT S T R+FD + Q+L + + G+ + + +
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 238 SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTL 293
LL G + ++ D +R + +A H+ +SC+ + G +AT S+ L
Sbjct: 283 RLL-LAGYDDFNCNVWDALKADRAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 17/228 (7%)
Query: 95 CLEFNAPVKGVRLRRDKIVVVLEG---LIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS 151
CL + ++ +L D +++ G + ++ ++ T+ P C S
Sbjct: 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA--CYALAIS 150
Query: 152 NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIR 211
+S + F G++ + DL + + H SCI ++ GT+L T T +R
Sbjct: 151 PDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VR 208
Query: 212 VFDTGSGQKLNELRRGLCVL----CPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA 267
+D G++L + + CP LA G +S +V ++ + P++ L +
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGE--WLAV-GMESSNVEVLHVNKPDKYQLHL-- 263
Query: 268 HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315
HE+ + + G + K L+ + T G + + + SS L
Sbjct: 264 HESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGASIFQSKESSSVL 310
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
Mn2+
pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
Galnac-ser On Lectin Domain
Length = 570
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 325 HVFSVDEAQKINKQSSLASASFLPKYFSS--SWSFCKFQIPSDPPCICAFGADSNSIIVI 382
H+ + D A + +SSL SF K+F + +W KF P +PP A+G N +
Sbjct: 381 HLSAGDVAVQKKLRSSLNCKSF--KWFMTKIAWDLPKFYPPVEPPA-AAWGEIRNVGTGL 437
Query: 383 CADGSY 388
CAD +
Sbjct: 438 CADTKH 443
>pdb|1XD7|A Chain A, Crsytal Structure Of A Putative Dna Binding Protein
Length = 145
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 95 CLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCP 149
L A V G L++D + L++VY +Q ++L NPNPK CP
Sbjct: 52 ILTSRAGVPGASLKKDPADI---SLLEVYRAVQKQEELFAVHENPNPK-----CP 98
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 178 PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR 226
P + H A ++ IA+ G + +AS GT IR+++ G+G ++ R
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLDGT-IRLWECGTGTTIHTFNR 218
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 262 PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR 310
P + H A ++ IA+ G + +AS GT IR+++ G+G ++ R
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLDGT-IRLWECGTGTTIHTFNR 218
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 178 PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR 226
P + H A ++ IA+ G + +AS GT IR+++ G+G ++ R
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGT-IRLWECGTGTTIHTFNR 221
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 262 PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR 310
P + H A ++ IA+ G + +AS GT IR+++ G+G ++ R
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGT-IRLWECGTGTTIHTFNR 221
>pdb|19HC|A Chain A, Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans
Atcc 27774
pdb|19HC|B Chain B, Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans
Atcc 27774
Length = 292
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 140 NPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ 195
P+ LC C + + L P S H +D ADP RP L A H L C+ ++
Sbjct: 220 KPEILCATCHHRSPLSLTPPKCGSCHTKEIDAADPGRPNLMAAYH---LECMGCHK 272
>pdb|1DUW|A Chain A, Structure Of Nonaheme Cytochrome C
Length = 292
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 141 PKGLCVLCPNSNNSLLAFPGR-KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ 195
P+ LC C + + L A P + S H +D A+P RP L A H L C+ +Q
Sbjct: 221 PETLCATC-HHRSPLSATPPKCGSCHTKEIDPANPNRPNLKAAYH---LQCMGCHQ 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,677,633
Number of Sequences: 62578
Number of extensions: 594671
Number of successful extensions: 1169
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1069
Number of HSP's gapped (non-prelim): 99
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)