Query psy3711
Match_columns 141
No_of_seqs 192 out of 1231
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 23:36:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3025|consensus 100.0 1.1E-40 2.3E-45 252.8 7.9 136 1-141 1-137 (137)
2 MTH00222 ATP9 ATP synthase F0 99.9 3.8E-24 8.1E-29 150.9 10.0 76 66-141 2-77 (77)
3 PRK07558 F0F1 ATP synthase sub 99.9 4.3E-23 9.2E-28 144.5 9.4 72 69-140 3-74 (74)
4 PRK06876 F0F1 ATP synthase sub 99.9 1.4E-22 3E-27 143.2 9.8 74 67-140 2-76 (78)
5 PRK13471 F0F1 ATP synthase sub 99.9 1.1E-21 2.3E-26 140.7 10.5 76 66-141 9-85 (85)
6 PRK13469 F0F1 ATP synthase sub 99.9 1.3E-21 2.8E-26 138.1 10.3 76 65-140 3-78 (79)
7 PRK08482 F0F1 ATP synthase sub 99.9 2.4E-21 5.2E-26 143.5 10.3 75 66-140 25-100 (105)
8 CHL00061 atpH ATP synthase CF0 99.9 5.5E-21 1.2E-25 135.8 10.1 73 68-140 4-77 (81)
9 PRK07159 F0F1 ATP synthase sub 99.9 7.2E-21 1.6E-25 140.1 10.7 69 72-140 31-99 (100)
10 PRK13464 F0F1 ATP synthase sub 99.8 9.7E-21 2.1E-25 139.7 10.7 71 70-140 12-83 (101)
11 TIGR03322 alt_F1F0_F0_C altern 99.8 1.2E-20 2.7E-25 135.4 10.4 75 66-140 3-78 (86)
12 PRK13468 F0F1 ATP synthase sub 99.8 1.2E-20 2.7E-25 134.2 9.9 73 68-140 4-77 (82)
13 PRK05880 F0F1 ATP synthase sub 99.8 1.4E-20 3E-25 134.0 9.7 72 69-140 5-77 (81)
14 PRK07354 F0F1 ATP synthase sub 99.8 3.7E-20 8.1E-25 131.2 10.0 73 68-140 4-77 (81)
15 TIGR01260 ATP_synt_c ATP synth 99.8 1.6E-20 3.4E-25 126.1 6.9 57 84-140 2-58 (58)
16 PRK07874 F0F1 ATP synthase sub 99.8 3.4E-20 7.3E-25 131.8 8.9 68 66-136 12-79 (80)
17 PRK13467 F0F1 ATP synthase sub 99.8 8E-20 1.7E-24 125.8 8.4 63 72-137 3-65 (66)
18 COG0636 AtpE F0F1-type ATP syn 99.8 6.7E-19 1.5E-23 124.2 9.5 71 70-140 6-77 (79)
19 PRK13466 F0F1 ATP synthase sub 99.8 3.8E-19 8.2E-24 122.3 8.0 56 82-137 10-65 (66)
20 PF00137 ATP-synt_C: ATP synth 99.7 1.1E-15 2.5E-20 103.3 9.3 65 72-140 1-66 (66)
21 PRK06251 V-type ATP synthase s 99.6 1.8E-15 3.9E-20 111.8 9.7 71 66-140 29-100 (102)
22 PRK08344 V-type ATP synthase s 99.5 1.7E-13 3.6E-18 107.4 10.0 71 66-139 83-154 (157)
23 PRK14893 V-type ATP synthase s 99.5 3E-13 6.4E-18 106.5 9.4 70 67-140 86-156 (161)
24 PRK14893 V-type ATP synthase s 99.5 4.3E-13 9.3E-18 105.6 9.5 67 69-139 7-74 (161)
25 PRK06271 V-type ATP synthase s 99.5 3.2E-13 6.8E-18 110.2 8.9 68 68-140 142-210 (213)
26 PRK06558 V-type ATP synthase s 99.4 1.6E-12 3.6E-17 102.1 9.6 71 66-140 86-157 (159)
27 PRK06271 V-type ATP synthase s 99.4 2.8E-12 6E-17 104.7 8.2 63 74-140 2-65 (213)
28 PRK09621 V-type ATP synthase s 99.3 1.1E-11 2.4E-16 95.8 8.6 65 69-137 75-140 (141)
29 PRK06558 V-type ATP synthase s 99.2 1.6E-10 3.4E-15 90.9 8.5 67 70-140 14-81 (159)
30 PRK08344 V-type ATP synthase s 99.0 1.2E-09 2.6E-14 85.8 8.3 63 72-138 2-65 (157)
31 PRK06649 V-type ATP synthase s 98.9 2E-08 4.3E-13 78.3 9.3 71 65-139 72-143 (143)
32 PRK09621 V-type ATP synthase s 98.5 6.5E-07 1.4E-11 69.4 8.5 64 72-139 4-68 (141)
33 KOG0232|consensus 98.4 2.4E-07 5.2E-12 73.2 4.1 70 67-140 83-153 (156)
34 TIGR01100 V_ATP_synt_C vacuola 98.0 3.1E-05 6.7E-10 57.9 7.7 63 73-139 3-66 (108)
35 PRK06649 V-type ATP synthase s 97.4 0.00065 1.4E-08 53.2 7.1 63 72-139 3-71 (143)
36 KOG0233|consensus 96.2 0.00056 1.2E-08 55.7 -1.9 63 72-138 42-105 (196)
37 KOG0233|consensus 95.8 0.011 2.4E-07 48.2 3.9 70 64-137 118-188 (196)
38 PF06716 DUF1201: Protein of u 57.7 31 0.00067 22.9 4.5 27 112-138 5-31 (54)
39 TIGR01100 V_ATP_synt_C vacuola 51.3 14 0.00031 27.6 2.5 32 66-97 74-106 (108)
40 KOG0232|consensus 40.3 1.3E+02 0.0029 24.1 6.5 37 101-137 35-71 (156)
41 TIGR00822 EII-Sor PTS system, 24.7 4.4E+02 0.0096 22.5 9.0 54 75-137 177-237 (265)
42 PRK09400 secE preprotein trans 24.1 1.1E+02 0.0025 20.5 3.2 19 69-87 33-51 (61)
43 TIGR00327 secE_euk_arch protei 21.2 1.4E+02 0.003 20.2 3.2 18 70-87 30-47 (61)
44 PF09472 MtrF: Tetrahydrometha 20.9 2.2E+02 0.0048 19.5 4.1 7 61-67 24-30 (64)
45 COG2443 Sss1 Preprotein transl 20.2 1.5E+02 0.0032 20.5 3.1 21 67-87 32-52 (65)
No 1
>KOG3025|consensus
Probab=100.00 E-value=1.1e-40 Score=252.78 Aligned_cols=136 Identities=65% Similarity=0.934 Sum_probs=122.9
Q ss_pred CcchhhhhhCchhhhhhhhcccccccccchhhhhcCccccc-cCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy3711 1 MYSLAKFAASPAARSALISSARMTAMRPLSSSITSTSAFTQ-QTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGA 79 (141)
Q Consensus 1 m~~~~~~~~~p~~r~~~~~~s~~~~~~p~s~~~~~~~~~~~-~~~~~~~~~~~~~~~r~fqts~~~~~i~~a~~~igaGl 79 (141)
||+|.|+..+| +++++++ +...||+| ...++||... .+.+..++...++..|+||||++++|||+++|+||+|+
T Consensus 1 M~~~~k~~~~P---~~v~~~~-~~~~~~ls-~~~~~~e~~~~~~~~~~s~~~~~~~~RsFQTS~is~~i~~aak~igag~ 75 (137)
T KOG3025|consen 1 MFTCLKSTITP---SLVSAGS-RAAWRPLS-YSSSRPENVRTLQASSLSNIAQLVEPRSFQTSVISRDIDTAAKFIGAGA 75 (137)
T ss_pred CchhhhhccCc---HHHHHHh-hhhhhhhh-hhhcccchhhhhhhcccccccccccccceehhhhHHHHHHHHHHhccch
Confidence 89999999888 8889999 99999999 7778887543 33334444445577899999999999999999999999
Q ss_pred HHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3711 80 ATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 141 (141)
Q Consensus 80 A~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa~ 141 (141)
+++|+.|+|+|||+||+++|+|++|||++|+|+|+|+||||+|.|++++||||++|+++|+|
T Consensus 76 atvgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilfa~ 137 (137)
T KOG3025|consen 76 ATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM 137 (137)
T ss_pred hhhccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 2
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.91 E-value=3.8e-24 Score=150.94 Aligned_cols=76 Identities=82% Similarity=1.293 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3711 66 RDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 141 (141)
Q Consensus 66 ~~i~~a~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa~ 141 (141)
.|+.++++++|+|++++|.+|+|+|+|+++++++|+++||||+++++++++++|++|+|+++||+++++|+++|++
T Consensus 2 ~~~~~~~~~igaGla~iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa~ 77 (77)
T MTH00222 2 TEILTAAKFVGAGAATIGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFAL 77 (77)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4788899999999999999999999999999999999999999999999999999999999999999999999974
No 3
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.89 E-value=4.3e-23 Score=144.51 Aligned_cols=72 Identities=50% Similarity=0.922 Sum_probs=69.4
Q ss_pred HHHHHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 69 DSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 69 ~~a~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
..+.+++|+|+++++.+|+|+|+|.++++++|+++||||+++++++++++|++|+|+++||+++++++++|+
T Consensus 3 ~~~~~~igagla~laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllfa 74 (74)
T PRK07558 3 AEALKFIGAGLACIGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLFA 74 (74)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 457899999999999999999999999999999999999999999999999999999999999999999995
No 4
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.88 E-value=1.4e-22 Score=143.21 Aligned_cols=74 Identities=30% Similarity=0.461 Sum_probs=71.6
Q ss_pred HHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 67 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 67 ~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
|+..+.+++|+|+++ ++.+|+|+|+|.++++++++++||||+++++++++++|++|+|+++||+|+++++++|+
T Consensus 2 ~~~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~ 76 (78)
T PRK06876 2 ELIMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA 76 (78)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788999999999 99999999999999999999999999999999999999999999999999999999996
No 5
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.87 E-value=1.1e-21 Score=140.71 Aligned_cols=76 Identities=30% Similarity=0.573 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3711 66 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 141 (141)
Q Consensus 66 ~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa~ 141 (141)
.++..+.+++|+|+++ ++.+|+|+|+|+++++++++++||||++++++++++++++|+|+++||+++++|+++|++
T Consensus 9 ~~~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~~ 85 (85)
T PRK13471 9 QALILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLVL 85 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3567889999999998 999999999999999999999999999999999999999999999999999999999974
No 6
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.87 E-value=1.3e-21 Score=138.05 Aligned_cols=76 Identities=33% Similarity=0.564 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 65 SRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 65 ~~~i~~a~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
+++++.+++++|+|+++++.+|+|+|+|.++++++++++||||+++|++++++++++|.|+++||+++++++++|+
T Consensus 3 ~~~~~~~~~~igagla~laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~ 78 (79)
T PRK13469 3 GKAFVMGMSAIGAGIAALAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV 78 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567889999999999999999999999999999999999999999999999999999999999999999999996
No 7
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.86 E-value=2.4e-21 Score=143.55 Aligned_cols=75 Identities=28% Similarity=0.517 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 66 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 66 ~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
.+++.+++++|+|+++ ++.+|+|+|+|+++++++|+++||||++++++++++||++|+|+++||+++++|+++|+
T Consensus 25 ~~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~ 100 (105)
T PRK08482 25 MDMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYA 100 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888999999999 99999999999999999999999999999999999999999999999999999999996
No 8
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.85 E-value=5.5e-21 Score=135.79 Aligned_cols=73 Identities=36% Similarity=0.579 Sum_probs=70.1
Q ss_pred HHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 68 IDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 68 i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
+..+++++|+|+++ ++.+|+|+|+|.++++++++++||||++++++++++++++|+|+++||+++++++++|+
T Consensus 4 ~~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~ 77 (81)
T CHL00061 4 LISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55667999999999 99999999999999999999999999999999999999999999999999999999996
No 9
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=99.85 E-value=7.2e-21 Score=140.08 Aligned_cols=69 Identities=42% Similarity=0.799 Sum_probs=67.4
Q ss_pred HHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 72 AKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 72 ~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
++++|+|+++++.+|+|+|+|.++++++|++|||||+++++++++++|++++|+++||+++++++++|+
T Consensus 31 ~~~igaGLa~laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~ 99 (100)
T PRK07159 31 AAYIGAGLAMIGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV 99 (100)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999999999999999999999996
No 10
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.85 E-value=9.7e-21 Score=139.67 Aligned_cols=71 Identities=24% Similarity=0.418 Sum_probs=68.4
Q ss_pred HHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 70 SAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 70 ~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
.+.+.+++|+++ ++.+|+|+|+|+++++++|+++||||+++++++++|+|++|+|+++||+++++++++|+
T Consensus 12 ~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa 83 (101)
T PRK13464 12 NGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYA 83 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999988 99999999999999999999999999999999999999999999999999999999996
No 11
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.84 E-value=1.2e-20 Score=135.41 Aligned_cols=75 Identities=21% Similarity=0.460 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 66 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 66 ~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
.++..+.+++|+|+++ ++.+|+|+|+|.++++++|+++||||.+++++++|++|++|+|+++||+++++++++|+
T Consensus 3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~ 78 (86)
T TIGR03322 3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFA 78 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788999999998 99999999999999999999999999999999999999999999999999999999986
No 12
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.84 E-value=1.2e-20 Score=134.25 Aligned_cols=73 Identities=25% Similarity=0.474 Sum_probs=70.4
Q ss_pred HHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 68 IDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 68 i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
+..+++++|+|+++ ++.+|+|+|+|.++++++|+++||||++++++++++++++|+|+++||+++++++++|+
T Consensus 4 ~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa 77 (82)
T PRK13468 4 LIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFA 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778999999998 99999999999999999999999999999999999999999999999999999999997
No 13
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.84 E-value=1.4e-20 Score=133.95 Aligned_cols=72 Identities=33% Similarity=0.481 Sum_probs=67.3
Q ss_pred HHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 69 DSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 69 ~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
+.+++++|+|+++ +|.+|+|+|+|+++++++|+++||||++++++++||||++|+|++.+|++++.++++|+
T Consensus 5 ~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~ 77 (81)
T PRK05880 5 IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567999999988 89999999999999999999999999999999999999999999999988888888775
No 14
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.83 E-value=3.7e-20 Score=131.19 Aligned_cols=73 Identities=33% Similarity=0.576 Sum_probs=70.0
Q ss_pred HHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 68 IDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 68 i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
+..+++++|+|+++ ++.+|+|+|+|.++++++++++||||++++++++++++++|+|+++||+++++++++|+
T Consensus 4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~ 77 (81)
T PRK07354 4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667999999998 99999999999999999999999999999999999999999999999999999999996
No 15
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=99.83 E-value=1.6e-20 Score=126.07 Aligned_cols=57 Identities=33% Similarity=0.605 Sum_probs=55.4
Q ss_pred hhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 84 VAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 84 ~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
.+|+|+|+|+++++++++++||||++++++++++||++|+|+++||+++++++++|+
T Consensus 2 a~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllfa 58 (58)
T TIGR01260 2 AIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLFA 58 (58)
T ss_pred cchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 579999999999999999999999999999999999999999999999999999995
No 16
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=99.83 E-value=3.4e-20 Score=131.80 Aligned_cols=68 Identities=35% Similarity=0.575 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711 66 RDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFL 136 (141)
Q Consensus 66 ~~i~~a~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~l 136 (141)
.|+..+.+++|+|+++ +|+|+|+|+++++++|+++||||+++++++++|||++|+|+++||+++++|+
T Consensus 12 ~~~~~~~~~ig~Glaa---iGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l 79 (80)
T PRK07874 12 ETTFTGLGAVGYGLAA---IGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred HHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778899999999876 6899999999999999999999999999999999999999999999999997
No 17
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=99.81 E-value=8e-20 Score=125.79 Aligned_cols=63 Identities=32% Similarity=0.452 Sum_probs=59.1
Q ss_pred HHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711 72 AKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL 137 (141)
Q Consensus 72 ~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~ll 137 (141)
..+||+|+++ +|+|+|+|+++++++|++|||||++++++++||+|++|+|+++||+++++|++
T Consensus 3 ~~~i~~Glaa---iGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il 65 (66)
T PRK13467 3 LTILALALAC---MGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888776 58999999999999999999999999999999999999999999999999986
No 18
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.79 E-value=6.7e-19 Score=124.17 Aligned_cols=71 Identities=38% Similarity=0.670 Sum_probs=68.7
Q ss_pred HHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 70 SAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 70 ~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
++..++++|+++ ++.+|+|+|+|++++++++++|||||+++++|+.++++++|+|+++||+|+++|+++|+
T Consensus 6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~ 77 (79)
T COG0636 6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFA 77 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567899999999 99999999999999999999999999999999999999999999999999999999986
No 19
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.79 E-value=3.8e-19 Score=122.33 Aligned_cols=56 Identities=29% Similarity=0.479 Sum_probs=53.6
Q ss_pred HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711 82 VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL 137 (141)
Q Consensus 82 lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~ll 137 (141)
++.+|+|+|+|+++++++|+++||||+++++++++|+|++|+|+++||+++++|++
T Consensus 10 laa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~ 65 (66)
T PRK13466 10 LACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999999999999999999999985
No 20
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=99.65 E-value=1.1e-15 Score=103.32 Aligned_cols=65 Identities=38% Similarity=0.661 Sum_probs=61.9
Q ss_pred HHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 72 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 72 ~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
++++|+|+++ ++.+|+|+|+|.++++++++++|||| +|++++++.+++|+++||+++++++++|+
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~----~~~~~li~~~~~E~~~i~glv~~~~l~~~ 66 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPE----LFTKMLIGAAFIEALGIYGLVVALLLLFK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGG----HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 4789999999 99999999999999999999999998 88999999999999999999999999985
No 21
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=99.63 E-value=1.8e-15 Score=111.79 Aligned_cols=71 Identities=23% Similarity=0.352 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 66 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 66 ~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
++...+.+++|+|+++ ++.+|+|+|+|.++++.+++++||||+.+ +++++++|+|+++||+++++|+++|+
T Consensus 29 ~~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g----~~ii~~al~Ea~aIyglvVa~lLlf~ 100 (102)
T PRK06251 29 TAQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFG----TVLIFVAIGEGIAVYGILFAVLMLFG 100 (102)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455678999999998 89999999999999999999999998655 67999999999999999999999986
No 22
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.50 E-value=1.7e-13 Score=107.45 Aligned_cols=71 Identities=30% Similarity=0.369 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3711 66 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 139 (141)
Q Consensus 66 ~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllF 139 (141)
.++.++++++++|+++ ++.+++|+|+|.++++.+++++||| +++|++++++++|+|+++||+++++++++.
T Consensus 83 ~~l~~g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P---~~l~~~~ii~~a~~Ea~ai~~lvvallll~ 154 (157)
T PRK08344 83 INLGKALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTP---GKTFTQTIILAAYAELMGIFGLVFAILGLS 154 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999998 9999999999999999999999999 689999999999999999999999999875
No 23
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.47 E-value=3e-13 Score=106.51 Aligned_cols=70 Identities=29% Similarity=0.409 Sum_probs=64.4
Q ss_pred HHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 67 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 67 ~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
...++.+++|+|+++ ++.+|+|+|+|.++++.+++++||||..+ +++++.++.|+++||+|+++|+++|.
T Consensus 86 ~~~~~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~----~~li~~al~Et~~Iyglvv~~lll~~ 156 (161)
T PRK14893 86 SVTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFA----RGIIFSALPETQAIYGFLIAILLMVF 156 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999 99999999999999999999999998655 58999999999999999999999885
No 24
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.46 E-value=4.3e-13 Score=105.59 Aligned_cols=67 Identities=30% Similarity=0.410 Sum_probs=62.5
Q ss_pred HHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3711 69 DSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 139 (141)
Q Consensus 69 ~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllF 139 (141)
..+++++|+|+++ ++.+|+|+|+|+++++++++++||||.. .++++++++.|+++||+++++++++|
T Consensus 7 ~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~----~~~li~~al~Ea~aIyglvia~lll~ 74 (161)
T PRK14893 7 GTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMF----ARGIIFSALPETQAIYGFLIAILLLV 74 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999 9999999999999999999999999874 56899999999999999999999988
No 25
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.45 E-value=3.2e-13 Score=110.18 Aligned_cols=68 Identities=25% Similarity=0.354 Sum_probs=62.3
Q ss_pred HHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 68 IDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 68 i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
..++++++++|+++ ++.. +|+|+|.++++.+++++||||+.+|+ +++++++|+++||+++++++++|+
T Consensus 142 ~~~g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~~----~i~~a~~Ea~~i~~lvvalil~f~ 210 (213)
T PRK06271 142 GVETIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGKG----LVLAVMPETFAIFGLLIAILIMLG 210 (213)
T ss_pred hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999998 6666 99999999999999999999988875 899999999999999999999986
No 26
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.40 E-value=1.6e-12 Score=102.06 Aligned_cols=71 Identities=20% Similarity=0.196 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 66 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 66 ~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
.++.++..++++|+++ ++.+++|+++|.+.++.+++++||||+.+ ++++..+|+|+++||+|+++++++|.
T Consensus 86 ~~~~~g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~----~~li~~~~~E~~aI~glvvaill~~~ 157 (159)
T PRK06558 86 LSLAQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFT----KGIILAAMVETYAILAFVVSFLLLNG 157 (159)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567789999999999 99999999999999999999999997654 68999999999999999999999875
No 27
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.35 E-value=2.8e-12 Score=104.65 Aligned_cols=63 Identities=37% Similarity=0.454 Sum_probs=58.2
Q ss_pred HHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 74 FIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 74 ~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
.+|+|+++ ++.+|+|+|+|+++++++++++||||..++ ++++.++.|+++||+++++++++|.
T Consensus 2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~----~li~~al~e~~~Iyglvia~ll~~~ 65 (213)
T PRK06271 2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGT----AIVFQALPQTQGLYGFLVAILILFV 65 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47888988 889999999999999999999999987664 7999999999999999999999985
No 28
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=99.30 E-value=1.1e-11 Score=95.85 Aligned_cols=65 Identities=26% Similarity=0.360 Sum_probs=58.8
Q ss_pred HHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711 69 DSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL 137 (141)
Q Consensus 69 ~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~ll 137 (141)
..+...+++|+.+ ++..++|+|+|.+.++.+++++||||..++ ++++.+++|+.+||++++++++
T Consensus 75 ~~~~~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k----~~i~~alvE~~ai~~lv~a~ll 140 (141)
T PRK09621 75 LSALSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGK----SFAAIGIVESFALFAFVFALLL 140 (141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788999988 888999999999999999999999986555 7899999999999999999986
No 29
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.16 E-value=1.6e-10 Score=90.93 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=61.2
Q ss_pred HHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 70 SAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 70 ~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
....++|+++++ ++.+|+++|+|.++.+.+++++||||..+|. ++..++.|+++||+++++++++|.
T Consensus 14 ~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~----lI~~~l~e~~aIyGlvva~li~~~ 81 (159)
T PRK06558 14 AFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKA----LILQLLPGTQGLYGFVIGFLIWQK 81 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999988 8899999999999999999999999877765 799999999999999999999874
No 30
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.03 E-value=1.2e-09 Score=85.80 Aligned_cols=63 Identities=24% Similarity=0.289 Sum_probs=57.8
Q ss_pred HHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711 72 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLL 138 (141)
Q Consensus 72 ~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lll 138 (141)
+..+|+++++ ++.+|+++|+|..+.+.+++++|||| ++.++++..++.|+.+||+++++|+++
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~----~~~~~li~~a~~~t~~IYGlvi~~~i~ 65 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEK----NFRNALILAGLPMTQTIYGLITLFLIL 65 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678999998 88999999999999999999999998 677789999999999999999997764
No 31
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=98.85 E-value=2e-08 Score=78.33 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3711 65 SRDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 139 (141)
Q Consensus 65 ~~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllF 139 (141)
..++.++..++++|+.+ ++...+|+.||.+..+.+++++||| ++|..+++..+|+|+.+||++++++++.+
T Consensus 72 ~~s~~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p----~~f~~~ii~~~~~Et~Al~~lv~s~~~~~ 143 (143)
T PRK06649 72 VMSQTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETG----KGFANYLLVLGLIETVALFVMVFLMIFKF 143 (143)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566788999999998 7778899999999999999999999 47888999999999999999999998753
No 32
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=98.51 E-value=6.5e-07 Score=69.42 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=56.5
Q ss_pred HHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3711 72 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 139 (141)
Q Consensus 72 ~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllF 139 (141)
..++|+++++ ++.+|+++|++..+.+.+....|+||..++ .++--++.|+.+||+++++++++.
T Consensus 4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~----~~i~~~lP~tq~IYG~ii~~li~~ 68 (141)
T PRK09621 4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGK----IIGLSAMPSSQSIYGLILMLLLND 68 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhh----HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4568899988 888999999999999999999999987766 456666999999999999999874
No 33
>KOG0232|consensus
Probab=98.42 E-value=2.4e-07 Score=73.21 Aligned_cols=70 Identities=30% Similarity=0.434 Sum_probs=63.1
Q ss_pred HHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 67 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 67 ~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
.+.+++..+++|+.+ +..+++|..+|++....+.+.+||| ++|..++|-+.|.|.+++|+|++++++.+.
T Consensus 83 ~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQP----r~fv~~iLiLif~evlGLygLiva~~l~~~ 153 (156)
T KOG0232|consen 83 SLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQP----RLFVGMILILIFAEVLGLYGLIVALALLTV 153 (156)
T ss_pred chhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCc----hhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 455677889999998 7778899999999999999999999 688899999999999999999999998763
No 34
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=98.02 E-value=3.1e-05 Score=57.92 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=51.7
Q ss_pred HHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3711 73 KFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 139 (141)
Q Consensus 73 ~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllF 139 (141)
.++|+++++ +..+|++.|+++.+.+....=.+.|| +|.+.++-.+|.|+.+||++++++++..
T Consensus 3 ~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~----~~~k~lI~vi~~g~~gIYGlIia~ii~~ 66 (108)
T TIGR01100 3 GVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPE----LIMKSIIPVVMAGIIAIYGLVVAVLIAG 66 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467888888 88899999999988555554455586 5666789999999999999999999874
No 35
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=97.41 E-value=0.00065 Score=53.17 Aligned_cols=63 Identities=25% Similarity=0.334 Sum_probs=52.8
Q ss_pred HHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhc-----CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3711 72 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYAR-----NPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 139 (141)
Q Consensus 72 ~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giAR-----qPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllF 139 (141)
..++|+++++ ++.+|+++|.|+.+...+..+.+ +||. |. .++-.++.-+.+||+++++++++.
T Consensus 3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~----f~-~lvl~~lP~TqgiYG~vi~~~i~~ 71 (143)
T PRK06649 3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAP----FL-LIVFVGAPLTQTIYGYILMNTLLG 71 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchH----HH-HHHHHhchhHHHHHHHHHHHHHHh
Confidence 4578888888 88999999999999988888887 8874 33 667777888899999999999874
No 36
>KOG0233|consensus
Probab=96.20 E-value=0.00056 Score=55.68 Aligned_cols=63 Identities=24% Similarity=0.371 Sum_probs=55.9
Q ss_pred HHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711 72 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLL 138 (141)
Q Consensus 72 ~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lll 138 (141)
...+|.++++ +.+.|++.|+=+.+.+.+.+=-|-| ++.+.-+++..|.|+.+|||+++++++.
T Consensus 42 wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAP----RI~TKnLisIIfCEavaiyglI~Aivls 105 (196)
T KOG0233|consen 42 WASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAP----RIKTKNLISIIFCEAVAIYGLIMAIVLS 105 (196)
T ss_pred HHHhhHHHhhhhhhhhhheeEEEecceeecCcccCC----cccccceEEEEeehHHHHHHHHHHHHHH
Confidence 4667888888 8899999999999999999999999 5677789999999999999999999875
No 37
>KOG0233|consensus
Probab=95.83 E-value=0.011 Score=48.24 Aligned_cols=70 Identities=21% Similarity=0.386 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711 64 VSRDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL 137 (141)
Q Consensus 64 ~~~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~ll 137 (141)
..+++..+....++|+.+ +.-.-+|+..|++++.+--+=|.||. ||.+.++--.|-.+++||++++++++
T Consensus 118 ~~~n~~~gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~t----LFvKilivEIfgSaiGLfGlIvgi~m 188 (196)
T KOG0233|consen 118 GAQNLYTGYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPT----LFVKILIVEIFGSAIGLFGLIVGIVM 188 (196)
T ss_pred ccchhhhhHHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCcc----ceeeeehhhhHHHHHHHHHHHHHhhc
Confidence 346677888999999997 55567999999999999999999995 66667777788889999999999874
No 38
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=57.72 E-value=31 Score=22.93 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711 112 LFSYAILGFALSEAMGLFSLMMAFLLL 138 (141)
Q Consensus 112 Lfs~~iLg~Al~Eal~Lf~LvvA~lll 138 (141)
|++|..++|+|.--+.|+++++-+...
T Consensus 5 LRs~L~~~F~~lIC~Fl~~~~~F~~F~ 31 (54)
T PF06716_consen 5 LRSYLLLAFGFLICLFLFCLVVFIWFV 31 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998766543
No 39
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=51.30 E-value=14 Score=27.62 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHH
Q psy3711 66 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGS 97 (141)
Q Consensus 66 ~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s 97 (141)
.++.++..++++|+.+ +....+|+.+|.+++.
T Consensus 74 ~s~~~g~~~~~aGL~vGl~~l~sgi~~Gi~G~~ 106 (108)
T TIGR01100 74 YSLYKGFIHLGAGLAVGLSGLAAGFAIGIVGDA 106 (108)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhccccccC
Confidence 3567899999999998 7778899999988753
No 40
>KOG0232|consensus
Probab=40.27 E-value=1.3e+02 Score=24.08 Aligned_cols=37 Identities=16% Similarity=0.417 Sum_probs=27.6
Q ss_pred HHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711 101 GYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL 137 (141)
Q Consensus 101 giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~ll 137 (141)
|++.--..+.++-.+-++=..+.-.+.||+++++.++
T Consensus 35 GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i 71 (156)
T KOG0232|consen 35 GIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVI 71 (156)
T ss_pred hhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 3333334455666788999999999999999888764
No 41
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=24.67 E-value=4.4e+02 Score=22.46 Aligned_cols=54 Identities=22% Similarity=0.275 Sum_probs=36.7
Q ss_pred HhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q psy3711 75 IGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAM-------GLFSLMMAFLL 137 (141)
Q Consensus 75 igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal-------~Lf~LvvA~ll 137 (141)
+--|+.+.|.+=+++|.+....-. .+.+..-++++||.+.--+ ++++.+++++.
T Consensus 177 v~~Gl~vaggmLPAvGfAmLl~~m---------~~k~~~~ff~lGF~laayl~l~~l~iAiig~~~A~i~ 237 (265)
T TIGR00822 177 VTHGLQIAGGIIVVVGYAMVLRMM---------FKAYLMPFFYLGFLFAAYTDFSLLAFGAVGGAGALLY 237 (265)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH---------hhcchHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 445565555556778887766433 2446788999999987655 66777777754
No 42
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=24.10 E-value=1.1e+02 Score=20.54 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=14.0
Q ss_pred HHHHHHHhHHHHHHhhhhh
Q psy3711 69 DSAAKFIGAGAATVGVAGS 87 (141)
Q Consensus 69 ~~a~~~igaGlA~lg~~Ga 87 (141)
.+.++..|.|..++|.+|-
T Consensus 33 ~~ia~~~~iG~~i~G~iGf 51 (61)
T PRK09400 33 LLVAKVTGLGILLIGLIGF 51 (61)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3457888889988876653
No 43
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=21.22 E-value=1.4e+02 Score=20.22 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=13.4
Q ss_pred HHHHHHhHHHHHHhhhhh
Q psy3711 70 SAAKFIGAGAATVGVAGS 87 (141)
Q Consensus 70 ~a~~~igaGlA~lg~~Ga 87 (141)
+.++..|.|.+++|.+|-
T Consensus 30 ~iak~t~iG~~i~G~IGf 47 (61)
T TIGR00327 30 KVAKVTGIGIIIVGIIGY 47 (61)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788889888887663
No 44
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=20.87 E-value=2.2e+02 Score=19.55 Aligned_cols=7 Identities=29% Similarity=0.629 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy3711 61 TSAVSRD 67 (141)
Q Consensus 61 ts~~~~~ 67 (141)
+..++||
T Consensus 24 ~qLiaR~ 30 (64)
T PF09472_consen 24 AQLIARD 30 (64)
T ss_pred HHHhhhc
Confidence 3334443
No 45
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=20.19 E-value=1.5e+02 Score=20.55 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=16.1
Q ss_pred HHHHHHHHHhHHHHHHhhhhh
Q psy3711 67 DIDSAAKFIGAGAATVGVAGS 87 (141)
Q Consensus 67 ~i~~a~~~igaGlA~lg~~Ga 87 (141)
+..+.+|.-|+|+..+|.+|-
T Consensus 32 Ey~~~aKi~~~Gi~liG~IGf 52 (65)
T COG2443 32 EYSKIAKITGLGILLIGIIGF 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999998886664
Done!