Query psy3711
Match_columns 141
No_of_seqs 192 out of 1231
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 23:36:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4s_A ATP synthase subunit 9, 100.0 9.9E-29 3.4E-33 173.1 8.7 76 66-141 1-76 (76)
2 2wgm_A ATP synthase subunit C, 99.9 2.2E-22 7.7E-27 143.6 10.4 77 64-140 5-81 (89)
3 2xqu_A C15_RING, ATP synthase 99.9 1.5E-21 5.2E-26 137.2 9.8 74 67-140 4-78 (82)
4 1wu0_A ATP synthase C chain; A 99.8 3.9E-21 1.3E-25 132.3 7.8 69 72-140 3-72 (72)
5 1a91_A F1FO ATPase subunit C; 99.8 1.3E-20 4.6E-25 131.8 10.6 67 74-140 10-77 (79)
6 2x2v_A ATP synthase subunit C; 99.8 8.2E-21 2.8E-25 129.7 9.0 66 74-139 3-69 (69)
7 2xnd_J ATP synthase lipid-bind 99.8 1.3E-22 4.3E-27 139.9 -0.8 71 69-139 2-72 (72)
8 2bl2_A V-type sodium ATP synth 99.6 6.4E-16 2.2E-20 119.7 8.4 71 66-140 84-155 (156)
9 2bl2_A V-type sodium ATP synth 99.1 3E-10 1E-14 87.9 8.6 66 71-140 13-79 (156)
10 1rh5_B Preprotein translocase 24.7 68 0.0023 21.5 3.2 19 70-88 36-54 (74)
11 1vf5_F Protein PET M; photosyn 21.0 1.4E+02 0.0047 17.5 4.0 25 110-138 3-27 (35)
No 1
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=99.95 E-value=9.9e-29 Score=173.06 Aligned_cols=76 Identities=58% Similarity=0.951 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3711 66 RDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 141 (141)
Q Consensus 66 ~~i~~a~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa~ 141 (141)
+|++.++|+||+|++++|++|+|+|+|++|++++++++||||+++|+|+|++||++++|+++||||+++|+++|++
T Consensus 1 M~lv~aak~IGaGlA~ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFav 76 (76)
T 4f4s_A 1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV 76 (76)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHHHHHHHHHHHHHHHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3788999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=99.88 E-value=2.2e-22 Score=143.57 Aligned_cols=77 Identities=35% Similarity=0.607 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 64 VSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 64 ~~~~i~~a~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
.+++++++++++|+|+++++.+|+|+|+|.++++++++++||||+++++|++++++++|+|+++||+++++|+++|+
T Consensus 5 ~~~~~~~~~~~igaGla~la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~ 81 (89)
T 2wgm_A 5 FAKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYA 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788999999999999989999999999999999999999999999999999999999999999999999999986
No 3
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=99.86 E-value=1.5e-21 Score=137.24 Aligned_cols=74 Identities=34% Similarity=0.602 Sum_probs=71.4
Q ss_pred HHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 67 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 67 ~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
++.++++++|+|+++ ++.+|+|+|+|+++++++++++||||+++++|++++++++|+|+++||+++++|+++|+
T Consensus 4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~ 78 (82)
T 2xqu_A 4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFA 78 (82)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999 99999999999999999999999999999999999999999999999999999999986
No 4
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=99.84 E-value=3.9e-21 Score=132.31 Aligned_cols=69 Identities=30% Similarity=0.514 Sum_probs=66.5
Q ss_pred HHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 72 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 72 ~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
++++|+|+++ ++.+|+|+|+|+++++++++++||||.++|+|++++++++|+|+++||+++++|+++|+
T Consensus 3 ~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf~ 72 (72)
T 1wu0_A 3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLGR 72 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5789999998 89999999999999999999999999999999999999999999999999999999985
No 5
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=99.84 E-value=1.3e-20 Score=131.83 Aligned_cols=67 Identities=24% Similarity=0.461 Sum_probs=60.0
Q ss_pred HHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 74 FIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 74 ~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
.+++++++ ++.+|+|+|+|+++++++++++||||+++++|++++++++|+|+++||+++++|+++|+
T Consensus 10 ~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~ 77 (79)
T 1a91_A 10 YMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444 44578999999999999999999999999999999999999999999999999999996
No 6
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=99.84 E-value=8.2e-21 Score=129.74 Aligned_cols=66 Identities=26% Similarity=0.562 Sum_probs=63.9
Q ss_pred HHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3711 74 FIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 139 (141)
Q Consensus 74 ~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllF 139 (141)
++|+|+++ ++.+|+|+|+|+++++++++++||||+++|+|++++++++|+|+++||+++++|+++|
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf 69 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLILF 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58899998 8889999999999999999999999999999999999999999999999999999987
No 7
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=99.84 E-value=1.3e-22 Score=139.86 Aligned_cols=71 Identities=93% Similarity=1.397 Sum_probs=67.6
Q ss_pred HHHHHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3711 69 DSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 139 (141)
Q Consensus 69 ~~a~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllF 139 (141)
+++++++|+|+++++.+|+|+|+|+++++++++++||||+++++|++++++++|+|+++||+++++|+++|
T Consensus 2 ~~~~~~igaGLa~l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lllf 72 (72)
T 2xnd_J 2 DTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 72 (72)
T ss_dssp TTTTTTTTTTGGGGGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34678999999998899999999999999999999999999999999999999999999999999999886
No 8
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.63 E-value=6.4e-16 Score=119.68 Aligned_cols=71 Identities=23% Similarity=0.320 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 66 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 66 ~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
.++.++++++|+|+++ ++.+|+|+|+|+++++++++++||||++++ ++++++|+|+++||+++++++++|+
T Consensus 84 ~~~~~g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~----~ii~~a~~Ea~ai~glvia~ll~~~ 155 (156)
T 2bl2_A 84 MSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATK----GIIFAAMVETYAILGFVISFLLVLN 155 (156)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH----HHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567899999999999 899999999999999999999999998776 7899999999999999999999985
No 9
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.09 E-value=3e-10 Score=87.86 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=61.3
Q ss_pred HHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711 71 AAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140 (141)
Q Consensus 71 a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa 140 (141)
.+.++|+++++ ++.+|+++|+|.++.+.+++.+||||. +.++++..+|.|+++||+|++++++++.
T Consensus 13 ~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~----~~k~li~~~l~e~~~IYGlvva~li~~~ 79 (156)
T 2bl2_A 13 VFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEK----FGQALILQLLPGTQGLYGFVIAFLIFIN 79 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGG----HHHHHHHHHGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999 999999999999999999999999975 4678999999999999999999999874
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=24.71 E-value=68 Score=21.51 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=14.1
Q ss_pred HHHHHHhHHHHHHhhhhhH
Q psy3711 70 SAAKFIGAGAATVGVAGSG 88 (141)
Q Consensus 70 ~a~~~igaGlA~lg~~GaG 88 (141)
+.++..|.|++++|.+|--
T Consensus 36 ~iak~~~iG~~imG~IGfi 54 (74)
T 1rh5_B 36 AVAKVTALGISLLGIIGYI 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4578888999888776643
No 11
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=20.98 E-value=1.4e+02 Score=17.54 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711 110 QQLFSYAILGFALSEAMGLFSLMMAFLLL 138 (141)
Q Consensus 110 g~Lfs~~iLg~Al~Eal~Lf~LvvA~lll 138 (141)
+.+|..+.+.+ .+.++|+.+.|+++
T Consensus 3 ~EIf~~A~i~~----~LvLvGla~Gf~LL 27 (35)
T 1vf5_F 3 EEMLYAALLSF----GLIFVGWGLGVLLL 27 (35)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhh
Confidence 45666666444 55788999998876
Done!