RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3711
(141 letters)
>gnl|CDD|164765 MTH00222, ATP9, ATP synthase F0 subunit 9; Provisional.
Length = 77
Score = 116 bits (293), Expect = 3e-35
Identities = 62/75 (82%), Positives = 71/75 (94%)
Query: 67 DIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAM 126
+I +AAKF+GAGAAT+G AGSGAGIG+VFG+LIIGYARNPSLKQQLF+YAILGFA+SEAM
Sbjct: 3 EILTAAKFVGAGAATIGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAM 62
Query: 127 GLFSLMMAFLLLFAF 141
GLF LMMAFL+LFA
Sbjct: 63 GLFCLMMAFLILFAL 77
>gnl|CDD|181027 PRK07558, PRK07558, F0F1 ATP synthase subunit C; Validated.
Length = 74
Score = 74.6 bits (184), Expect = 9e-19
Identities = 36/70 (51%), Positives = 51/70 (72%)
Query: 71 AAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFS 130
A KFIGAG A +G+AG+ G+G++FG+ + G RNPS F Y ++G AL+EA+G+FS
Sbjct: 5 ALKFIGAGLACIGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFS 64
Query: 131 LMMAFLLLFA 140
++A LLLFA
Sbjct: 65 FLIALLLLFA 74
>gnl|CDD|235949 PRK07159, PRK07159, F0F1 ATP synthase subunit C; Validated.
Length = 100
Score = 54.1 bits (130), Expect = 2e-10
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 33 ITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIG 92
+ S F Q TQ + + A +IGAG A +GV G G G G
Sbjct: 1 VNSIVNFVGQILQNTQTV---------SQKVAADSSGLKAAYIGAGLAMIGVIGVGLGQG 51
Query: 93 SVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 139
FG + ARNP ++Q+F +G A+SE +++L++AF+L+F
Sbjct: 52 YAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIF 98
>gnl|CDD|215743 pfam00137, ATP-synt_C, ATP synthase subunit C.
Length = 66
Score = 49.4 bits (119), Expect = 4e-09
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 72 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFS 130
+GAG A + G+G GIG + I ARNP L F ++G AL+EA+ ++
Sbjct: 1 LAALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPEL----FGKMLIGAALAEALAIYG 56
Query: 131 LMMAFLLLFA 140
L++A LLLFA
Sbjct: 57 LVIALLLLFA 66
>gnl|CDD|223709 COG0636, AtpE, F0F1-type ATP synthase, subunit
c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy
production and conversion].
Length = 79
Score = 47.6 bits (114), Expect = 3e-08
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 70 SAAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGL 128
IGAG A + G+G G G + + + AR P +LF +G AL EA+G+
Sbjct: 6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGI 65
Query: 129 FSLMMAFLLLFAF 141
+ L++A LLLFA
Sbjct: 66 YGLVIALLLLFAN 78
>gnl|CDD|184068 PRK13469, PRK13469, F0F1 ATP synthase subunit C; Provisional.
Length = 79
Score = 47.3 bits (113), Expect = 4e-08
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 65 SRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSE 124
+ IGAG A + G+G GIG G + R P ++ S +LG AL+E
Sbjct: 3 GKAFVMGMSAIGAGIAALAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAE 62
Query: 125 AMGLFSLMMAFLLLFA 140
A ++ L++A +LLF
Sbjct: 63 ATAIYGLVIAIILLFV 78
>gnl|CDD|184069 PRK13471, PRK13471, F0F1 ATP synthase subunit C; Provisional.
Length = 85
Score = 41.4 bits (97), Expect = 8e-06
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 71 AAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 129
K+IGAG +G G G G G++ + AR P + + + +L A++E G++
Sbjct: 14 LGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIY 73
Query: 130 SLMMAFLLLFA 140
SL++AFL+L
Sbjct: 74 SLLIAFLILLV 84
>gnl|CDD|169138 PRK07874, PRK07874, F0F1 ATP synthase subunit C; Validated.
Length = 80
Score = 40.5 bits (95), Expect = 1e-05
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 69 DSAAKFIGAGAATVGVA--GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAM 126
+ F G GA G+A G G G+G V G + G AR P + QL + LG A EA+
Sbjct: 10 ATETTFTGLGAVGYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEAL 69
Query: 127 GLFSLMMAFLL 137
L L+ FL
Sbjct: 70 ALIGLVAGFLF 80
>gnl|CDD|177001 CHL00061, atpH, ATP synthase CF0 C subunit.
Length = 81
Score = 34.3 bits (79), Expect = 0.003
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 68 IDSAAKFIGAGAATVGVAGSGAGIG--SVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 125
+ SAA I AG A VG+A G G+G + G + G AR P + ++ +L A EA
Sbjct: 4 LISAASVIAAGLA-VGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEA 62
Query: 126 MGLFSLMMAFLLLFA 140
+ ++ L++A LLFA
Sbjct: 63 LTIYGLVVALALLFA 77
>gnl|CDD|130327 TIGR01260, ATP_synt_c, ATP synthase, F0 subunit c. This model
describes the subunit c in F1/F0-ATP synthase, a
membrane associated multisubunit complex found in
bacteria and organelles of higher eukaryotes, namely,
mitochondria and chloroplast. This enzyme is principally
involved in the synthesis of ATP from ADP and inorganic
phosphate by coupling the energy derived from the proton
electrochemical gradient across the biological membrane.
A brief description of this multisubunit enzyme complex:
F1 and F0 represent two major clusters of subunits. The
functional role of subunit c, which is the part of F0
cluster, has been delineated in-vitro reconstitution
experiments. Overall experimental proof exists that
demonstrate the electrochemical gradient is converted
into a rotational torque that leads to ATP synthesis
[Energy metabolism, ATP-proton motive force
interconversion].
Length = 58
Score = 33.9 bits (78), Expect = 0.003
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 86 GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140
G+ GIG + G + AR P LK L + +G L +A+ + ++++A +LLFA
Sbjct: 4 GAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLFA 58
>gnl|CDD|180739 PRK06876, PRK06876, F0F1 ATP synthase subunit C; Validated.
Length = 78
Score = 32.6 bits (75), Expect = 0.012
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 71 AAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 129
I A A + G+ GIG + G + G AR P L L + +G L +A+ +
Sbjct: 6 GLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPII 65
Query: 130 SLMMAFLLLFA 140
+ +A L LFA
Sbjct: 66 GVGIALLFLFA 76
>gnl|CDD|180303 PRK05880, PRK05880, F0F1 ATP synthase subunit C; Validated.
Length = 81
Score = 31.3 bits (71), Expect = 0.042
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 70 SAAKFIGAGAATVGVA-GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGL 128
+A IG G G A G+G G G +LI G AR P + +LF+ + L EA
Sbjct: 6 AAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYF 65
Query: 129 FSLMMAFLLLFAF 141
+L AF+ LF F
Sbjct: 66 INL--AFMALFVF 76
>gnl|CDD|180942 PRK07354, PRK07354, F0F1 ATP synthase subunit C; Validated.
Length = 81
Score = 31.0 bits (70), Expect = 0.054
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 67 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 125
I SAA + A A + G G G G+ G + G AR P + ++ +L A E+
Sbjct: 3 SITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMES 62
Query: 126 MGLFSLMMAFLLLFA 140
+ ++ L++A +LLFA
Sbjct: 63 LTIYGLVVALVLLFA 77
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 30.6 bits (70), Expect = 0.20
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 48 QQISILPAVRQFQTSAV-SRDIDSAAKFIGA-----GAATVGVAGSGAGIGSVFG 96
+ I+ V Q +S++ + D+ +A +++G G V + SGA IG FG
Sbjct: 390 EAIAWNNEVPQGLSSSIFTTDLRNAFRWLGPKGSDCGIVNVNIGTSGAEIGGAFG 444
>gnl|CDD|181444 PRK08482, PRK08482, F0F1 ATP synthase subunit C; Validated.
Length = 105
Score = 29.8 bits (67), Expect = 0.22
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 71 AAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFS 130
A IG G A +G A G+G+ + I G ARNP L +L + + A+ EA +++
Sbjct: 34 LAAGIGLGIAALGGA---IGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYA 90
Query: 131 LMMAFLLLFA 140
L++A + L+A
Sbjct: 91 LVIALIALYA 100
>gnl|CDD|172066 PRK13466, PRK13466, F0F1 ATP synthase subunit C; Provisional.
Length = 66
Score = 27.6 bits (61), Expect = 0.76
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 78 GAATVGVAGSGAGIGS--VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAF 135
GA +G+A G IG + S + AR P ++ +L + LG A E +L M F
Sbjct: 4 GALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTF 63
Query: 136 LL 137
+L
Sbjct: 64 VL 65
>gnl|CDD|180501 PRK06271, PRK06271, V-type ATP synthase subunit K; Validated.
Length = 213
Score = 28.6 bits (64), Expect = 0.81
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 75 IGAGAATVGVAGSGAGIGS-VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMM 133
IGAG A VG+AG G+GIG+ + G+ G K F AI+ AL + GL+ ++
Sbjct: 3 IGAGLA-VGIAGLGSGIGAGITGASGAGVVAEDPNK---FGTAIVFQALPQTQGLYGFLV 58
Query: 134 AFLLLFAF 141
A L+LF F
Sbjct: 59 AILILFVF 66
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 28.3 bits (64), Expect = 1.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 48 QQISILPAVRQFQTSAV-SRDIDSAAKFIG-----AGAATVGVAGSGAGIGSVFG 96
+ I+I V Q +S++ + D+ A +++G G V + SGA IG FG
Sbjct: 394 EAIAINNDVPQGLSSSIFTEDLREAFRWLGPKGSDCGIVNVNIPTSGAEIGGAFG 448
>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related
proteins of the D-specific 2-hydroxy dehydrogenase
family. This group contains a variety of proteins
variously identified as glycerate dehydrogenase (GDH,
aka Hydroxypyruvate Reductase) and other enzymes of the
2-hydroxyacid dehydrogenase family. GDH catalyzes the
reversible reaction of (R)-glycerate + NAD+ to
hydroxypyruvate + NADH + H+. 2-hydroxyacid
dehydrogenases catalyze the conversion of a wide variety
of D-2-hydroxy acids to their corresponding keto acids.
The general mechanism is (R)-lactate + acceptor to
pyruvate + reduced acceptor. Formate/glycerate and
related dehydrogenases of the D-specific 2-hydroxyacid
dehydrogenase superfamily include groups such as formate
dehydrogenase, glycerate dehydrogenase, L-alanine
dehydrogenase, and S-adenosylhomocysteine hydrolase.
Despite often low sequence identity, these proteins
typically have a characteristic arrangement of 2 similar
subdomains of the alpha/beta Rossmann-fold NAD+ binding
form. The NAD+ binding domain is inserted within the
linear sequence of the mostly N-terminal catalytic
domain, which has a similar domain structure to the
internal NAD binding domain. Structurally, these domains
are connected by extended alpha helices and create a
cleft in which NAD is bound, primarily to the C-terminal
portion of the 2nd (internal) domain. Some related
proteins have similar structural subdomain but with a
tandem arrangement of the catalytic and NAD-binding
subdomains in the linear sequence. While many members of
this family are dimeric, alanine DH is hexameric and
phosphoglycerate DH is tetrameric.
Length = 315
Score = 28.3 bits (64), Expect = 1.2
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 81 TVGVAGSG------AGIGSVFGSLIIGYARNPS 107
TVG+ G+G A + FG ++ Y+R+
Sbjct: 146 TVGIVGTGAIGLRVARLFKAFGCKVLAYSRSEK 178
>gnl|CDD|189541 pfam00426, VP4_haemagglut, Outer Capsid protein VP4
(Hemagglutinin).
Length = 776
Score = 27.8 bits (62), Expect = 1.9
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 8 AASPAARSALISSARMTAMR--PLSSSITSTSAFTQQTTPQTQQISILPAVRQF--QTSA 63
AAS +RS+ I S TA +S +T S + QT IS +++F QT
Sbjct: 571 AASSVSRSSSIRSVGSTASVWTDVSDQLTDVSNSVNDISTQTSTISRKLRLKEFATQTEG 630
Query: 64 VSRDIDSAA 72
++ D SAA
Sbjct: 631 MNFDDISAA 639
>gnl|CDD|184065 PRK13464, PRK13464, F0F1 ATP synthase subunit C; Provisional.
Length = 101
Score = 26.5 bits (58), Expect = 2.7
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 86 GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140
G+ G G + G + G AR P L L + A +A S+ + FL+L+A
Sbjct: 29 GTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYA 83
>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional.
Length = 796
Score = 27.5 bits (61), Expect = 3.0
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 11 PAARSALISSAR---MTAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRD 67
+ S ++S+A +++ RP SS +S S + +P+ I A +SA S
Sbjct: 1 GRSSSTMVSAAASTSLSSSRPQLSSFSSRSPQSATRSPRASSIKC-SASASASSSATSSS 59
Query: 68 IDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIG 101
A A + ++G G G G FG G
Sbjct: 60 ASLVANGAVALLSASAISGGGGGGGGGFGGFGGG 93
>gnl|CDD|177239 MTH00191, CYTB, cytochrome b; Provisional.
Length = 365
Score = 27.2 bits (61), Expect = 3.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 112 LFSYAILGFALSEAMGLFSLMMAFLLLFAF 141
LF+YAIL ++ G+ +L+M+ L+LF
Sbjct: 272 LFAYAILRSIPNKLGGVLALVMSILVLFLL 301
>gnl|CDD|200943 pfam00032, Cytochrom_B_C, Cytochrome b(C-terminal)/b6/petD.
Length = 102
Score = 25.9 bits (58), Expect = 4.1
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 112 LFSYAILGFALSEAMGLFSLMMAFLLLFAF 141
LF+YAIL ++ G+ +++++ L+LF
Sbjct: 18 LFAYAILRSIPNKLGGVIAMVLSILILFLL 47
>gnl|CDD|238179 cd00290, cytochrome_b_C, Cytochrome b(C-terminus)/b6/petD:
Cytochrome b is a subunit of cytochrome bc1, an
11-subunit mitochondrial respiratory enzyme. Cytochrome
b spans the mitochondrial membrane with 8 transmembrane
helices (A-H) in eukaryotes. In plants and
cyanobacteria, cytochrome b6 is analogous to eukaryote
cytochrome b, containing two chains: helices A-D are
encoded by the petB gene and helices E-H are encoded by
the petD gene in these organisms. Cytochrome b/b6
contains two bound hemes and two ubiquinol/ubiquinone
binding sites. The C-terminal domain is involved in
forming the ubiquinol/ubiquinone binding sites, but not
the heme binding sites. The N-terminal portion of
cytochrome b, which contains both heme binding sites,
is described in a separate CD.
Length = 147
Score = 26.1 bits (58), Expect = 5.8
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 112 LFSYAILGFALSEAMGLFSLMMAFLLLFAF 141
L YAIL ++ +G+ ++ + L LF
Sbjct: 69 LPVYAILRAIPNKLLGVLAMAASILSLFLV 98
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 26.2 bits (57), Expect = 7.0
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 30 SSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFI---GAGAATVGVAG 86
S S T S T TTP + S +AV+R DS + I GA A G G
Sbjct: 276 SPSTTRPSGSTTTTTPASSGPSAPGGPGSSSRNAVTRSTDSISGPIPSPGAPRAITGQMG 335
Query: 87 SGA 89
Sbjct: 336 ERE 338
>gnl|CDD|106966 PHA00657, PHA00657, crystallin beta/gamma motif-containing protein.
Length = 2052
Score = 26.3 bits (57), Expect = 7.7
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 5 AKFAASP-AARSALISS-----ARMTAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQ 58
A A P AA LI++ + MR + +IT+ TQ+ QQ +L + Q
Sbjct: 345 AYLAERPSAAAQTLIATLVGVGGNVAVMRGIDRTITTADQRTQRAQAAQQQAELLARLNQ 404
Query: 59 FQTS--AVSRDIDSAAKFIGAGA 79
+ ++RD D+ +F+ A
Sbjct: 405 LAAADKVLARDPDTFEQFVANAA 427
>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 359
Score = 25.9 bits (58), Expect = 7.9
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 65 SRDIDSAAKFIGAGAATVGVAGS-GAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALS 123
SR++++AA + S + + +L + ++ L
Sbjct: 30 SRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDV--LSLFLLLLL 87
Query: 124 EAMGLFSLMMAFLLLFAF 141
EA+ ++ L+L A
Sbjct: 88 EALLALLPILLLLVLAAL 105
>gnl|CDD|237460 PRK13656, PRK13656, trans-2-enoyl-CoA reductase; Provisional.
Length = 398
Score = 26.0 bits (58), Expect = 8.1
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 71 AAKFIGAGAATVGV----AGSGAGIGS 93
AA F GAGA T+GV G+ G+
Sbjct: 60 AAAF-GAGADTLGVFFEKPGTEKKTGT 85
>gnl|CDD|237390 PRK13467, PRK13467, F0F1 ATP synthase subunit C; Provisional.
Length = 66
Score = 24.7 bits (54), Expect = 8.2
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 73 KFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLM 132
+ A +GV+ G G + +L AR P + QL S ILG A E +L+
Sbjct: 4 TILALALACMGVS---LGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLV 60
Query: 133 MAFLL 137
M+F+L
Sbjct: 61 MSFIL 65
>gnl|CDD|204181 pfam09251, PhageP22-tail, Salmonella phage P22 tail-spike.
Members of this family of viral domains adopt a
structure consisting of a single-stranded right-handed
beta-helix, which in turn is made of parallel
beta-strands and short turns. They are required for
recognition of the 0-antigenic repeating units of the
cell surface, and for subsequent infection of the
bacterial cell.
Length = 549
Score = 25.9 bits (57), Expect = 9.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 68 IDSAAKFIGAGAATVGVAGSGAGIGSVF 95
ID AKFIG G G G+ + F
Sbjct: 54 IDCKAKFIGDGNLIFTNLGKGSVVNQPF 81
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.129 0.346
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,918,459
Number of extensions: 624383
Number of successful extensions: 1331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1295
Number of HSP's successfully gapped: 150
Length of query: 141
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 54
Effective length of database: 7,078,804
Effective search space: 382255416
Effective search space used: 382255416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.6 bits)