Query psy3712
Match_columns 109
No_of_seqs 108 out of 426
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 23:37:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2111|consensus 100.0 2.5E-42 5.4E-47 265.0 10.0 108 1-108 24-131 (346)
2 KOG2110|consensus 100.0 1.2E-28 2.6E-33 192.2 11.3 100 1-108 24-123 (391)
3 cd00200 WD40 WD40 domain, foun 97.6 0.0084 1.8E-07 41.6 14.7 96 3-106 31-130 (289)
4 cd00200 WD40 WD40 domain, foun 97.4 0.01 2.2E-07 41.3 12.8 95 4-106 158-256 (289)
5 KOG0647|consensus 97.3 0.0033 7.1E-08 49.3 10.0 77 22-103 112-189 (347)
6 KOG0305|consensus 97.0 0.015 3.2E-07 48.1 11.3 101 2-108 322-428 (484)
7 KOG1036|consensus 96.9 0.021 4.6E-07 44.8 10.8 73 22-102 93-166 (323)
8 KOG0310|consensus 96.8 0.019 4.2E-07 47.2 10.5 92 6-107 179-276 (487)
9 KOG0278|consensus 96.7 0.022 4.8E-07 44.1 9.4 78 22-107 142-221 (334)
10 KOG1645|consensus 96.6 0.009 2E-07 48.5 7.0 57 36-98 401-461 (463)
11 PTZ00420 coronin; Provisional 96.3 0.13 2.8E-06 43.4 12.5 78 23-107 125-205 (568)
12 PF09826 Beta_propel: Beta pro 96.3 0.023 4.9E-07 47.3 7.8 56 52-107 31-117 (521)
13 KOG0274|consensus 96.3 0.13 2.9E-06 43.0 12.2 93 7-107 232-327 (537)
14 PTZ00421 coronin; Provisional 96.0 0.39 8.5E-06 39.7 13.9 76 23-106 125-205 (493)
15 PF03178 CPSF_A: CPSF A subuni 96.0 0.19 4.2E-06 38.3 11.3 96 4-100 3-117 (321)
16 KOG0643|consensus 96.0 0.25 5.5E-06 38.5 11.7 72 23-101 52-131 (327)
17 KOG0274|consensus 96.0 0.29 6.2E-06 41.0 12.9 57 50-107 309-367 (537)
18 PLN00181 protein SPA1-RELATED; 95.8 0.67 1.5E-05 39.9 14.8 88 5-99 557-649 (793)
19 KOG0279|consensus 95.7 0.19 4.1E-06 39.3 9.8 87 5-98 174-262 (315)
20 PTZ00421 coronin; Provisional 95.3 1.1 2.4E-05 37.0 13.9 88 5-99 150-246 (493)
21 TIGR03866 PQQ_ABC_repeats PQQ- 95.1 0.83 1.8E-05 32.9 14.0 56 51-107 228-287 (300)
22 PTZ00420 coronin; Provisional 95.1 1.8 4E-05 36.6 14.7 87 5-99 150-249 (568)
23 KOG0306|consensus 94.9 0.37 8.1E-06 42.0 10.2 74 23-104 454-543 (888)
24 KOG0289|consensus 94.6 0.84 1.8E-05 37.7 11.0 75 26-108 350-428 (506)
25 KOG0266|consensus 94.4 1.2 2.6E-05 36.1 11.7 92 5-104 270-369 (456)
26 PF08366 LLGL: LLGL2; InterPr 94.2 1.1 2.4E-05 30.0 10.7 64 33-99 26-101 (105)
27 PF00780 CNH: CNH domain; Int 94.1 0.75 1.6E-05 33.9 9.3 53 54-107 209-263 (275)
28 KOG0281|consensus 93.9 0.3 6.6E-06 39.5 7.2 50 50-99 255-306 (499)
29 PF03178 CPSF_A: CPSF A subuni 93.9 2.2 4.8E-05 32.5 12.7 75 19-104 85-163 (321)
30 PF14781 BBS2_N: Ciliary BBSom 93.8 0.99 2.2E-05 31.5 8.8 52 52-103 20-86 (136)
31 KOG0291|consensus 93.7 1.3 2.7E-05 38.9 10.9 77 22-106 477-557 (893)
32 PF04053 Coatomer_WDAD: Coatom 93.5 0.33 7.2E-06 39.7 7.0 61 29-98 111-173 (443)
33 PF08662 eIF2A: Eukaryotic tra 93.4 2.2 4.7E-05 30.7 11.2 77 23-107 59-141 (194)
34 KOG0284|consensus 93.3 0.068 1.5E-06 43.5 2.6 75 25-107 224-302 (464)
35 KOG0276|consensus 93.1 0.32 6.9E-06 41.8 6.3 54 53-107 36-93 (794)
36 KOG0308|consensus 93.1 0.49 1.1E-05 40.7 7.4 64 38-107 184-251 (735)
37 KOG0315|consensus 93.1 2.5 5.3E-05 32.9 10.6 49 52-100 105-156 (311)
38 KOG0266|consensus 93.0 3.7 8.1E-05 33.2 12.3 90 3-99 225-319 (456)
39 PF00780 CNH: CNH domain; Int 92.7 3 6.5E-05 30.7 11.6 48 51-98 113-165 (275)
40 KOG1407|consensus 92.6 1.3 2.9E-05 34.5 8.6 86 5-98 44-136 (313)
41 KOG0318|consensus 92.5 4.5 9.8E-05 34.2 12.1 95 6-108 173-274 (603)
42 TIGR03866 PQQ_ABC_repeats PQQ- 92.4 3 6.5E-05 29.9 13.7 71 29-106 36-110 (300)
43 TIGR02658 TTQ_MADH_Hv methylam 92.2 5 0.00011 32.0 12.4 58 49-107 276-338 (352)
44 KOG1408|consensus 91.9 1.4 3E-05 38.8 8.7 91 2-100 617-715 (1080)
45 KOG2321|consensus 91.9 1.8 3.8E-05 37.1 9.2 69 23-98 175-258 (703)
46 KOG0291|consensus 91.9 5.4 0.00012 35.2 12.2 50 53-102 78-129 (893)
47 PF06433 Me-amine-dh_H: Methyl 91.4 1.4 2.9E-05 35.2 7.7 83 24-107 238-328 (342)
48 PF08662 eIF2A: Eukaryotic tra 91.3 4.1 9E-05 29.2 12.9 79 21-106 98-185 (194)
49 KOG0302|consensus 91.0 5.7 0.00012 32.5 10.8 88 4-98 281-378 (440)
50 KOG0310|consensus 90.8 2.7 5.9E-05 34.9 9.0 73 28-105 146-232 (487)
51 PF14727 PHTB1_N: PTHB1 N-term 90.6 4 8.6E-05 33.4 9.9 47 52-98 47-105 (418)
52 KOG0281|consensus 90.6 0.44 9.5E-06 38.6 4.2 86 4-98 341-428 (499)
53 KOG3881|consensus 90.4 2 4.3E-05 34.9 7.8 94 5-106 228-327 (412)
54 KOG0294|consensus 90.3 5.7 0.00012 31.7 10.1 88 5-99 109-198 (362)
55 KOG0300|consensus 90.3 1.3 2.8E-05 35.7 6.6 50 50-99 376-429 (481)
56 KOG0273|consensus 89.7 5.8 0.00013 33.1 10.1 71 21-98 274-347 (524)
57 KOG0303|consensus 89.6 1.8 3.8E-05 35.5 7.0 49 50-98 152-203 (472)
58 KOG0278|consensus 89.4 4.5 9.8E-05 31.6 8.8 88 2-98 164-254 (334)
59 KOG0263|consensus 89.4 2.3 4.9E-05 36.9 7.8 75 23-105 535-613 (707)
60 KOG1272|consensus 89.2 0.76 1.6E-05 38.2 4.7 67 23-96 293-360 (545)
61 KOG1273|consensus 89.1 2 4.4E-05 34.4 6.9 51 49-99 84-138 (405)
62 PLN00181 protein SPA1-RELATED; 89.1 14 0.0003 31.9 13.7 86 5-98 600-690 (793)
63 KOG2110|consensus 87.9 13 0.00028 30.1 11.4 99 3-107 106-212 (391)
64 KOG0318|consensus 87.7 7.3 0.00016 33.0 9.5 77 22-106 234-315 (603)
65 PF02239 Cytochrom_D1: Cytochr 86.8 12 0.00025 29.8 10.0 67 34-107 4-74 (369)
66 KOG1539|consensus 86.5 19 0.00042 32.1 11.7 73 28-107 162-240 (910)
67 KOG0268|consensus 84.4 2.3 5.1E-05 34.5 5.0 55 52-108 89-145 (433)
68 KOG0294|consensus 84.0 14 0.00029 29.7 9.0 76 22-107 42-123 (362)
69 COG5354 Uncharacterized protei 83.9 2.3 4.9E-05 35.8 4.8 57 46-102 102-164 (561)
70 KOG1274|consensus 83.8 21 0.00046 32.1 10.8 96 4-107 119-226 (933)
71 TIGR02658 TTQ_MADH_Hv methylam 83.4 18 0.00039 28.9 9.6 68 37-107 13-93 (352)
72 KOG0272|consensus 82.9 7.2 0.00016 32.1 7.2 96 4-107 284-383 (459)
73 KOG0265|consensus 82.2 16 0.00036 29.0 8.7 56 50-106 153-211 (338)
74 KOG2055|consensus 81.7 9.8 0.00021 31.8 7.6 75 25-107 305-382 (514)
75 KOG0315|consensus 81.4 7.5 0.00016 30.3 6.5 65 38-107 11-79 (311)
76 KOG0276|consensus 81.1 5.6 0.00012 34.5 6.2 79 23-107 183-265 (794)
77 KOG0305|consensus 79.3 18 0.00038 30.3 8.5 65 34-107 187-255 (484)
78 KOG1897|consensus 78.9 24 0.00053 32.1 9.6 100 5-105 752-862 (1096)
79 PF12234 Rav1p_C: RAVE protein 78.8 15 0.00032 31.8 8.1 57 34-96 39-102 (631)
80 KOG0282|consensus 78.6 8.7 0.00019 32.1 6.4 92 6-105 283-378 (503)
81 KOG0313|consensus 78.0 34 0.00074 28.0 9.5 96 5-108 283-386 (423)
82 KOG1524|consensus 78.0 2 4.3E-05 36.6 2.6 51 47-98 298-348 (737)
83 KOG0301|consensus 76.3 38 0.00083 29.7 9.8 67 25-98 209-288 (745)
84 KOG0650|consensus 76.1 21 0.00046 30.9 8.1 66 23-95 400-469 (733)
85 KOG0306|consensus 76.1 9.7 0.00021 33.7 6.2 65 25-98 375-442 (888)
86 KOG0646|consensus 75.9 12 0.00027 31.0 6.6 51 50-100 196-249 (476)
87 KOG0282|consensus 75.4 2.7 5.9E-05 35.0 2.7 53 52-105 280-336 (503)
88 PRK11028 6-phosphogluconolacto 75.4 33 0.0007 25.9 12.5 49 50-98 146-205 (330)
89 KOG0271|consensus 74.5 19 0.00042 29.6 7.2 84 7-98 98-187 (480)
90 KOG2106|consensus 74.4 54 0.0012 28.0 10.6 70 27-103 410-482 (626)
91 KOG0269|consensus 73.9 30 0.00066 30.7 8.7 72 22-100 219-298 (839)
92 KOG1009|consensus 73.8 13 0.00027 30.6 6.1 54 51-105 260-335 (434)
93 KOG0286|consensus 73.8 15 0.00032 29.2 6.3 48 51-98 76-127 (343)
94 KOG0292|consensus 73.7 13 0.00029 33.6 6.6 55 50-107 469-525 (1202)
95 KOG0285|consensus 73.6 8.7 0.00019 31.4 5.1 74 24-105 152-229 (460)
96 smart00036 CNH Domain found in 73.6 29 0.00064 26.6 8.0 43 64-107 236-278 (302)
97 KOG2314|consensus 73.3 42 0.00091 29.0 9.2 79 23-104 249-339 (698)
98 KOG0319|consensus 73.1 42 0.00091 29.6 9.3 71 22-99 104-180 (775)
99 KOG1898|consensus 73.1 37 0.0008 31.3 9.2 56 52-107 954-1013(1205)
100 KOG0646|consensus 72.8 3.7 7.9E-05 34.0 2.8 48 25-79 279-327 (476)
101 KOG0295|consensus 72.3 31 0.00067 28.1 7.9 54 51-105 313-370 (406)
102 KOG0270|consensus 72.2 16 0.00034 30.3 6.3 65 27-98 248-317 (463)
103 PF02239 Cytochrom_D1: Cytochr 72.0 48 0.001 26.3 15.0 55 52-107 58-116 (369)
104 KOG4547|consensus 72.0 62 0.0013 27.6 11.7 95 5-107 82-180 (541)
105 PF13360 PQQ_2: PQQ-like domai 71.8 31 0.00067 24.2 7.3 56 50-106 44-101 (238)
106 KOG0316|consensus 71.6 46 0.00099 25.9 9.2 66 26-98 62-131 (307)
107 PF12341 DUF3639: Protein of u 71.2 11 0.00025 19.1 3.5 25 72-96 2-27 (27)
108 KOG1036|consensus 70.9 9.5 0.00021 30.2 4.6 68 25-99 234-317 (323)
109 KOG0288|consensus 70.7 1.2 2.6E-05 36.5 -0.3 88 12-107 164-257 (459)
110 KOG4378|consensus 70.3 28 0.00061 29.7 7.5 53 52-104 231-286 (673)
111 PF13964 Kelch_6: Kelch motif 70.3 10 0.00022 20.8 3.7 27 37-63 13-39 (50)
112 KOG0273|consensus 69.8 33 0.00072 28.8 7.7 57 50-107 430-490 (524)
113 KOG0264|consensus 69.7 15 0.00033 30.2 5.7 69 31-107 236-312 (422)
114 KOG0289|consensus 69.0 68 0.0015 26.9 9.5 68 23-98 389-460 (506)
115 KOG0263|consensus 68.5 70 0.0015 28.1 9.7 86 5-99 559-650 (707)
116 PF00400 WD40: WD domain, G-be 68.0 14 0.00031 18.6 6.2 30 22-58 10-39 (39)
117 KOG0643|consensus 67.9 23 0.00051 27.9 6.2 56 52-108 169-229 (327)
118 PF04841 Vps16_N: Vps16, N-ter 67.7 63 0.0014 26.0 9.2 47 51-98 60-109 (410)
119 smart00036 CNH Domain found in 67.4 54 0.0012 25.1 10.3 94 1-100 20-133 (302)
120 KOG0650|consensus 66.6 36 0.00077 29.6 7.5 71 25-99 523-596 (733)
121 KOG2048|consensus 66.2 57 0.0012 28.5 8.6 69 23-98 475-548 (691)
122 PF08450 SGL: SMP-30/Gluconola 65.7 32 0.0007 24.8 6.5 39 50-89 203-245 (246)
123 KOG1446|consensus 65.6 56 0.0012 25.9 7.9 62 30-98 239-302 (311)
124 KOG2106|consensus 65.6 39 0.00085 28.8 7.4 60 21-89 285-347 (626)
125 PF04762 IKI3: IKI3 family; I 64.8 66 0.0014 29.0 9.2 47 52-98 402-456 (928)
126 PF03022 MRJP: Major royal jel 64.7 12 0.00026 28.7 4.1 51 49-99 31-97 (287)
127 PF07646 Kelch_2: Kelch motif; 64.5 17 0.00037 19.9 3.8 26 38-63 14-41 (49)
128 PRK01742 tolB translocation pr 64.5 71 0.0015 25.4 9.0 70 25-98 205-280 (429)
129 KOG1539|consensus 64.4 82 0.0018 28.3 9.4 48 52-99 56-104 (910)
130 PF07569 Hira: TUP1-like enhan 64.1 40 0.00087 24.8 6.7 66 24-98 13-95 (219)
131 KOG0303|consensus 63.4 49 0.0011 27.4 7.4 73 3-83 154-229 (472)
132 PF07569 Hira: TUP1-like enhan 61.9 30 0.00064 25.5 5.6 39 66-105 7-46 (219)
133 KOG0319|consensus 61.2 46 0.001 29.4 7.3 67 26-99 284-355 (775)
134 KOG0649|consensus 61.1 45 0.00097 26.1 6.5 60 32-99 215-275 (325)
135 KOG3881|consensus 60.1 79 0.0017 26.0 8.0 73 23-99 148-235 (412)
136 KOG0292|consensus 59.6 43 0.00093 30.6 6.9 77 22-106 50-130 (1202)
137 PF01344 Kelch_1: Kelch motif; 59.2 9.6 0.00021 20.4 2.1 28 36-63 12-39 (47)
138 KOG1274|consensus 58.0 70 0.0015 28.9 7.9 72 21-99 11-85 (933)
139 COG3915 Uncharacterized protei 56.4 9.6 0.00021 26.9 2.1 53 57-109 88-142 (155)
140 KOG0296|consensus 56.0 1.1E+02 0.0024 25.0 10.7 70 23-99 64-137 (399)
141 KOG0640|consensus 55.8 59 0.0013 26.3 6.6 96 5-108 240-344 (430)
142 KOG1273|consensus 55.7 80 0.0017 25.6 7.3 62 32-99 161-227 (405)
143 KOG0295|consensus 55.6 1.1E+02 0.0025 24.9 8.6 69 23-98 193-265 (406)
144 KOG0299|consensus 55.5 69 0.0015 26.8 7.1 51 52-103 224-278 (479)
145 KOG4497|consensus 55.1 64 0.0014 26.3 6.7 72 23-99 318-392 (447)
146 TIGR02800 propeller_TolB tol-p 54.6 98 0.0021 23.9 12.8 67 29-99 195-267 (417)
147 KOG1446|consensus 54.0 1.1E+02 0.0024 24.3 11.1 48 51-98 121-170 (311)
148 PF05694 SBP56: 56kDa selenium 53.7 59 0.0013 27.1 6.5 44 52-95 222-274 (461)
149 PF14761 HPS3_N: Hermansky-Pud 53.2 87 0.0019 23.5 6.9 76 6-90 1-79 (215)
150 KOG0279|consensus 52.5 1.1E+02 0.0023 24.3 7.4 49 50-98 83-135 (315)
151 KOG1272|consensus 52.4 16 0.00035 30.7 3.1 57 50-107 271-331 (545)
152 PF04053 Coatomer_WDAD: Coatom 52.1 1.3E+02 0.0029 24.7 8.5 55 51-107 88-142 (443)
153 KOG0272|consensus 51.6 1.2E+02 0.0027 25.2 7.9 55 50-105 365-424 (459)
154 PF06433 Me-amine-dh_H: Methyl 50.9 28 0.00061 27.9 4.1 46 53-98 68-115 (342)
155 KOG0771|consensus 50.9 1E+02 0.0022 25.3 7.3 30 75-105 287-317 (398)
156 KOG0271|consensus 50.2 1E+02 0.0022 25.5 7.2 68 23-97 409-477 (480)
157 PF05567 Neisseria_PilC: Neiss 50.2 59 0.0013 25.5 5.9 45 27-72 152-202 (335)
158 KOG0296|consensus 49.0 1.5E+02 0.0032 24.3 10.0 85 5-98 310-398 (399)
159 KOG2321|consensus 48.9 66 0.0014 27.9 6.2 48 51-98 293-343 (703)
160 PF09816 EAF: RNA polymerase I 48.3 29 0.00063 22.8 3.4 41 38-81 66-106 (109)
161 KOG4379|consensus 48.3 19 0.00042 30.2 2.9 36 63-98 560-595 (596)
162 KOG0268|consensus 48.2 25 0.00054 28.7 3.5 58 34-98 199-259 (433)
163 KOG0316|consensus 47.0 1.4E+02 0.003 23.4 9.2 76 22-105 16-95 (307)
164 KOG0639|consensus 46.8 97 0.0021 26.7 6.8 73 21-100 416-497 (705)
165 KOG0288|consensus 46.1 1.7E+02 0.0038 24.3 8.1 76 30-106 298-378 (459)
166 KOG0283|consensus 45.4 1.1E+02 0.0023 27.1 7.0 54 52-106 432-488 (712)
167 COG4946 Uncharacterized protei 45.1 2E+02 0.0043 24.7 9.0 76 23-104 359-438 (668)
168 PF01376 Enterotoxin_b: Heat-l 44.5 28 0.00062 22.5 2.7 19 52-70 83-101 (102)
169 PF03983 SHD1: SLA1 homology d 44.3 57 0.0012 20.2 4.0 24 47-70 5-28 (70)
170 KOG0771|consensus 44.3 84 0.0018 25.8 5.9 67 27-100 148-217 (398)
171 TIGR03548 mutarot_permut cycli 44.2 98 0.0021 23.4 6.2 52 37-95 125-177 (323)
172 PF09826 Beta_propel: Beta pro 44.1 1.2E+02 0.0026 25.4 7.1 68 28-95 56-144 (521)
173 KOG0321|consensus 42.9 79 0.0017 27.7 5.8 63 30-98 224-301 (720)
174 smart00612 Kelch Kelch domain. 42.5 37 0.00081 17.4 2.7 24 40-64 4-27 (47)
175 KOG0647|consensus 42.4 1.8E+02 0.0039 23.3 10.7 77 22-106 71-152 (347)
176 PF14762 HPS3_Mid: Hermansky-P 42.3 1.3E+02 0.0028 24.5 6.7 48 51-98 100-148 (374)
177 KOG1517|consensus 42.2 80 0.0017 29.5 5.9 65 27-98 1169-1239(1387)
178 PF13418 Kelch_4: Galactose ox 41.9 14 0.00031 20.0 0.9 29 36-64 13-41 (49)
179 KOG1645|consensus 41.7 1.3E+02 0.0028 25.0 6.7 50 51-100 215-268 (463)
180 COG5308 NUP170 Nuclear pore co 40.9 23 0.0005 32.3 2.4 49 50-98 100-160 (1263)
181 KOG0283|consensus 40.8 89 0.0019 27.5 5.9 49 51-99 389-441 (712)
182 PHA02754 hypothetical protein; 40.2 72 0.0016 19.3 3.8 24 72-95 35-58 (67)
183 PRK00178 tolB translocation pr 39.7 1.9E+02 0.004 22.8 8.4 65 33-98 161-231 (430)
184 KOG0307|consensus 39.6 54 0.0012 30.1 4.5 69 25-99 255-328 (1049)
185 PF05096 Glu_cyclase_2: Glutam 39.5 1.8E+02 0.0038 22.5 9.6 65 40-108 59-127 (264)
186 PF04762 IKI3: IKI3 family; I 39.3 2.9E+02 0.0064 25.0 9.5 89 5-99 239-334 (928)
187 PHA03098 kelch-like protein; P 39.1 1.2E+02 0.0025 24.8 6.2 29 36-64 295-323 (534)
188 KOG0275|consensus 38.6 1.1E+02 0.0024 25.0 5.7 51 49-99 367-424 (508)
189 PF08576 DUF1764: Eukaryotic p 38.6 12 0.00026 24.4 0.3 14 1-14 69-82 (102)
190 KOG1963|consensus 38.2 57 0.0012 29.0 4.4 55 52-107 37-98 (792)
191 KOG0277|consensus 38.0 2E+02 0.0043 22.7 6.8 49 52-102 170-224 (311)
192 KOG0293|consensus 37.6 45 0.00097 27.8 3.5 50 50-99 460-514 (519)
193 KOG0313|consensus 37.1 1.6E+02 0.0035 24.2 6.5 71 23-98 333-418 (423)
194 PF14593 PH_3: PH domain; PDB: 36.8 1.2E+02 0.0027 19.9 7.4 57 33-97 27-83 (104)
195 PF10395 Utp8: Utp8 family; I 36.3 1.1E+02 0.0024 26.8 5.8 34 64-97 122-158 (670)
196 PRK11028 6-phosphogluconolacto 36.1 1.9E+02 0.004 21.7 12.4 91 2-98 11-110 (330)
197 KOG4378|consensus 36.1 1.2E+02 0.0026 26.1 5.7 47 52-98 187-239 (673)
198 PRK04922 tolB translocation pr 35.6 2.3E+02 0.0049 22.6 8.6 70 26-99 206-281 (433)
199 PRK01742 tolB translocation pr 35.6 2.3E+02 0.0049 22.6 7.7 47 52-99 184-237 (429)
200 KOG1063|consensus 34.7 2.9E+02 0.0064 24.5 8.0 74 25-100 527-604 (764)
201 TIGR03300 assembly_YfgL outer 34.3 1.9E+02 0.0041 22.2 6.5 44 52-95 330-376 (377)
202 KOG0293|consensus 34.0 2.3E+02 0.0049 23.8 6.9 73 26-106 357-432 (519)
203 KOG0639|consensus 33.3 55 0.0012 28.1 3.4 84 5-98 533-622 (705)
204 KOG0973|consensus 32.1 4E+02 0.0088 24.4 9.6 71 22-99 128-202 (942)
205 PF13360 PQQ_2: PQQ-like domai 31.8 1.8E+02 0.0039 20.2 10.7 53 52-105 86-146 (238)
206 KOG0307|consensus 31.7 62 0.0013 29.7 3.6 50 49-98 181-240 (1049)
207 PF14761 HPS3_N: Hermansky-Pud 31.2 2.3E+02 0.0049 21.3 6.4 45 61-107 9-56 (215)
208 PRK04922 tolB translocation pr 31.1 2.7E+02 0.0058 22.1 7.4 49 51-99 183-237 (433)
209 TIGR02276 beta_rpt_yvtn 40-res 29.2 87 0.0019 15.8 4.7 28 51-78 13-40 (42)
210 PF13645 YkuD_2: L,D-transpept 28.7 1.8E+02 0.0039 21.1 5.1 34 32-67 31-64 (176)
211 PRK05137 tolB translocation pr 28.7 3E+02 0.0065 21.8 12.3 72 23-98 201-278 (435)
212 smart00320 WD40 WD40 repeats. 28.4 64 0.0014 14.0 5.6 29 23-58 12-40 (40)
213 PF14236 DUF4338: Domain of un 28.2 51 0.0011 25.9 2.3 33 52-84 85-117 (296)
214 KOG0322|consensus 28.1 1E+02 0.0022 24.4 3.9 27 34-66 163-189 (323)
215 KOG0290|consensus 27.5 3.2E+02 0.007 22.0 6.6 48 52-99 173-228 (364)
216 COG5161 SFT1 Pre-mRNA cleavage 27.5 4E+02 0.0088 24.8 7.8 71 26-105 592-665 (1319)
217 PF14779 BBS1: Ciliary BBSome 27.0 2.9E+02 0.0064 21.2 8.7 79 24-106 18-102 (257)
218 KOG4283|consensus 27.0 69 0.0015 25.7 2.8 48 51-98 123-176 (397)
219 KOG1896|consensus 26.7 2.8E+02 0.0061 26.3 6.9 35 64-98 1090-1124(1366)
220 PF14157 YmzC: YmzC-like prote 26.5 1.6E+02 0.0034 17.9 4.4 42 52-98 5-47 (63)
221 PF14655 RAB3GAP2_N: Rab3 GTPa 26.4 1.9E+02 0.004 23.8 5.3 54 37-96 80-144 (415)
222 KOG0973|consensus 26.3 2.3E+02 0.005 25.9 6.2 56 38-99 296-356 (942)
223 KOG1445|consensus 26.1 1.6E+02 0.0036 26.2 5.1 54 52-105 150-207 (1012)
224 PF07433 DUF1513: Protein of u 25.9 2.5E+02 0.0054 22.2 5.8 59 23-88 216-274 (305)
225 PRK00178 tolB translocation pr 25.7 3.3E+02 0.0071 21.3 12.3 71 25-99 200-276 (430)
226 PF11715 Nup160: Nucleoporin N 25.1 1.6E+02 0.0034 24.2 4.8 31 34-71 229-259 (547)
227 COG0549 ArcC Carbamate kinase 24.9 44 0.00095 26.4 1.4 68 23-98 166-243 (312)
228 KOG1898|consensus 24.6 2.1E+02 0.0046 26.7 5.6 77 23-99 875-963 (1205)
229 COG3737 Uncharacterized conser 24.4 66 0.0014 22.2 2.1 33 22-64 22-54 (127)
230 KOG0379|consensus 24.2 2.4E+02 0.0052 23.2 5.7 63 36-98 123-198 (482)
231 PF10214 Rrn6: RNA polymerase 23.9 4.9E+02 0.011 22.8 9.1 54 51-104 223-285 (765)
232 KOG0285|consensus 23.8 4.2E+02 0.0092 21.9 8.7 94 5-106 175-272 (460)
233 COG4880 Secreted protein conta 23.6 1.1E+02 0.0024 25.9 3.5 58 3-71 546-603 (603)
234 PRK04792 tolB translocation pr 23.5 4E+02 0.0086 21.5 9.1 69 26-98 220-294 (448)
235 KOG0322|consensus 23.1 1.1E+02 0.0025 24.1 3.3 56 50-106 225-288 (323)
236 KOG1240|consensus 22.6 7E+02 0.015 24.0 8.7 72 22-100 1194-1275(1431)
237 PRK03629 tolB translocation pr 22.1 4.1E+02 0.0089 21.2 12.0 70 25-98 200-275 (429)
238 PRK02889 tolB translocation pr 22.0 4.1E+02 0.0088 21.1 7.5 60 35-98 163-228 (427)
239 KOG0265|consensus 22.0 3.2E+02 0.007 21.9 5.7 62 30-98 97-163 (338)
240 KOG4499|consensus 21.9 3.5E+02 0.0076 21.2 5.8 33 50-82 231-264 (310)
241 COG3386 Gluconolactonase [Carb 21.6 3.9E+02 0.0085 20.8 6.2 39 52-91 235-277 (307)
242 KOG0649|consensus 21.6 4.1E+02 0.0088 20.9 11.1 47 52-98 178-235 (325)
243 KOG1900|consensus 21.3 1.7E+02 0.0036 27.7 4.5 48 51-98 98-157 (1311)
244 PRK05137 tolB translocation pr 21.1 4.2E+02 0.0092 21.0 9.0 62 37-99 167-235 (435)
245 PF12456 hSac2: Inositol phosp 21.1 2.1E+02 0.0046 18.9 4.0 26 80-105 49-74 (115)
246 KOG1188|consensus 21.0 1.8E+02 0.0038 23.7 4.1 50 49-98 47-102 (376)
247 PRK02888 nitrous-oxide reducta 20.9 2.6E+02 0.0057 24.4 5.4 50 50-99 294-352 (635)
248 PF09973 DUF2208: Predicted me 20.8 69 0.0015 24.3 1.8 54 49-106 161-223 (233)
249 KOG0284|consensus 20.8 1.6E+02 0.0035 24.5 3.9 73 22-102 137-213 (464)
250 COG2001 Uncharacterized protei 20.7 79 0.0017 22.3 1.9 16 38-60 106-121 (146)
251 KOG1587|consensus 20.6 1.3E+02 0.0029 25.6 3.5 47 53-99 421-473 (555)
252 KOG0286|consensus 20.5 4.5E+02 0.0098 21.1 8.4 41 49-89 292-333 (343)
253 KOG1963|consensus 20.5 3.4E+02 0.0075 24.3 6.1 54 51-105 272-328 (792)
254 KOG4441|consensus 20.5 3.1E+02 0.0068 23.2 5.8 62 25-89 420-483 (571)
255 KOG4441|consensus 20.4 3.6E+02 0.0078 22.8 6.1 52 35-86 284-337 (571)
256 KOG3441|consensus 20.3 1.2E+02 0.0025 21.2 2.6 28 45-72 98-125 (149)
257 KOG0302|consensus 20.2 5.1E+02 0.011 21.5 7.1 48 51-98 279-332 (440)
258 PF15390 DUF4613: Domain of un 20.0 55 0.0012 28.4 1.2 22 23-44 634-655 (671)
No 1
>KOG2111|consensus
Probab=100.00 E-value=2.5e-42 Score=264.98 Aligned_cols=108 Identities=61% Similarity=1.089 Sum_probs=104.8
Q ss_pred CCcceEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEec
Q psy3712 1 MEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLR 80 (109)
Q Consensus 1 ~~~Gf~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~ 80 (109)
|++|||||||+||++..++++..||++++|||||||++||||||.+|+||||||+||||.+++.+.|++|.++|++|+|+
T Consensus 24 ~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~ 103 (346)
T KOG2111|consen 24 TDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLR 103 (346)
T ss_pred ecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEc
Confidence 68999999999999988888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCeEEEEEcCCCCEEeEEec
Q psy3712 81 RDKIVVVLEGLIKVYTFIQCPQQLHIYL 108 (109)
Q Consensus 81 r~~lvVvl~~~i~vy~~~~~~~ll~~~~ 108 (109)
|+||||||+++|+||+|+++|+++|.+.
T Consensus 104 r~riVvvl~~~I~VytF~~n~k~l~~~e 131 (346)
T KOG2111|consen 104 RDRIVVVLENKIYVYTFPDNPKLLHVIE 131 (346)
T ss_pred CCeEEEEecCeEEEEEcCCChhheeeee
Confidence 9999999999999999999999999874
No 2
>KOG2110|consensus
Probab=99.96 E-value=1.2e-28 Score=192.22 Aligned_cols=100 Identities=29% Similarity=0.508 Sum_probs=93.4
Q ss_pred CCcceEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEec
Q psy3712 1 MEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLR 80 (109)
Q Consensus 1 ~~~Gf~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~ 80 (109)
+++||++|+|+|+.+.++.+ .+++.+|||||+|+++|+|+. ++| |+++++|.+++..|||+.||++|++|||+
T Consensus 24 s~~Gyk~~~~~~~~k~~~~~--~~~~~IvEmLFSSSLvaiV~~-~qp----r~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN 96 (391)
T KOG2110|consen 24 SKDGYKIFSCSPFEKCFSKD--TEGVSIVEMLFSSSLVAIVSI-KQP----RKLKVVHFKKKTTICEIFFPTSILAVRMN 96 (391)
T ss_pred CCCceeEEecCchHHhhccc--CCCeEEEEeecccceeEEEec-CCC----ceEEEEEcccCceEEEEecCCceEEEEEc
Confidence 57999999999999977654 789999999999999999998 444 99999999999999999999999999999
Q ss_pred CCEEEEEeCCeEEEEEcCCCCEEeEEec
Q psy3712 81 RDKIVVVLEGLIKVYTFIQCPQQLHIYL 108 (109)
Q Consensus 81 r~~lvVvl~~~i~vy~~~~~~~ll~~~~ 108 (109)
|+||+|+|+++|||||++ +||+|||+.
T Consensus 97 r~RLvV~Lee~IyIydI~-~MklLhTI~ 123 (391)
T KOG2110|consen 97 RKRLVVCLEESIYIYDIK-DMKLLHTIE 123 (391)
T ss_pred cceEEEEEcccEEEEecc-cceeehhhh
Confidence 999999999999999999 699999974
No 3
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.64 E-value=0.0084 Score=41.65 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=65.8
Q ss_pred cceEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccC-ceeEEEecC
Q psy3712 3 DGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA-PVKGVRLRR 81 (109)
Q Consensus 3 ~Gf~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s-~V~~V~l~r 81 (109)
...++|+.++...........+++..+......+.++..+. .+.+.+||..+++.+.++.... +|..+.+.+
T Consensus 31 g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 103 (289)
T cd00200 31 GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSP 103 (289)
T ss_pred cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC-------CCeEEEEEcCcccceEEEeccCCcEEEEEEcC
Confidence 34678887765443322223456656666666677777653 4689999999988888777544 899999998
Q ss_pred C--EEEEEe-CCeEEEEEcCCCCEEeEE
Q psy3712 82 D--KIVVVL-EGLIKVYTFIQCPQQLHI 106 (109)
Q Consensus 82 ~--~lvVvl-~~~i~vy~~~~~~~ll~~ 106 (109)
+ .+++.. +..+.+|++. +.+.+..
T Consensus 104 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~ 130 (289)
T cd00200 104 DGRILSSSSRDKTIKVWDVE-TGKCLTT 130 (289)
T ss_pred CCCEEEEecCCCeEEEEECC-CcEEEEE
Confidence 4 555555 7899999997 3454443
No 4
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.43 E-value=0.01 Score=41.25 Aligned_cols=95 Identities=13% Similarity=0.168 Sum_probs=64.6
Q ss_pred ceEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEE-EccCceeEEEecC-
Q psy3712 4 GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICL-EFNAPVKGVRLRR- 81 (109)
Q Consensus 4 Gf~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el-~f~s~V~~V~l~r- 81 (109)
-.++|+..............+.+..+......+.++..+. .+.+.+||..+++.+.++ ..+.+|.++.++.
T Consensus 158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 230 (289)
T cd00200 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-------DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230 (289)
T ss_pred cEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-------CCcEEEEECCCCceecchhhcCCceEEEEEcCC
Confidence 3567766544332222223456777777777777766653 367999999999999988 5666999999998
Q ss_pred CEEEEEe--CCeEEEEEcCCCCEEeEE
Q psy3712 82 DKIVVVL--EGLIKVYTFIQCPQQLHI 106 (109)
Q Consensus 82 ~~lvVvl--~~~i~vy~~~~~~~ll~~ 106 (109)
+.++++. +.++++|++.. .+.+.+
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~-~~~~~~ 256 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRT-GECVQT 256 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCC-ceeEEE
Confidence 3444444 78999999973 444443
No 5
>KOG0647|consensus
Probab=97.32 E-value=0.0033 Score=49.34 Aligned_cols=77 Identities=22% Similarity=0.297 Sum_probs=67.2
Q ss_pred CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCCEEEEEeC-CeEEEEEcCCC
Q psy3712 22 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLE-GLIKVYTFIQC 100 (109)
Q Consensus 22 ~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~lvVvl~-~~i~vy~~~~~ 100 (109)
+++++..+.+...-|+=+|+.|.= .+.|+.||.++...++.++.|..+=+.-+....+||++. +.|-||++.++
T Consensus 112 Hd~pvkt~~wv~~~~~~cl~TGSW-----DKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 112 HDAPVKTCHWVPGMNYQCLVTGSW-----DKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENP 186 (347)
T ss_pred cccceeEEEEecCCCcceeEeccc-----ccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCC
Confidence 578999999998888777776642 367999999999999999999999999999999999998 68999999876
Q ss_pred CEE
Q psy3712 101 PQQ 103 (109)
Q Consensus 101 ~~l 103 (109)
|..
T Consensus 187 ~te 189 (347)
T KOG0647|consen 187 PTE 189 (347)
T ss_pred cch
Confidence 654
No 6
>KOG0305|consensus
Probab=97.00 E-value=0.015 Score=48.14 Aligned_cols=101 Identities=11% Similarity=0.185 Sum_probs=74.8
Q ss_pred CcceEEEeecCCceeeeeecCCCCEEEEEEc-CCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEec
Q psy3712 2 EDGFRIYNCDPLKEKERQDFTDGGLGHVEML-FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLR 80 (109)
Q Consensus 2 ~~Gf~Iy~~~P~~~~~~~~~~~g~v~~veml-~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~ 80 (109)
++...||+..--..+.+..-+.+.|..+.-- +..|++|. |||. +.+++++||..+++.+-++...+-|.++..+
T Consensus 322 DN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAs-GGGs----~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Ws 396 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLAT-GGGS----ADRCIKFWNTNTGARIDSVDTGSQVCSLIWS 396 (484)
T ss_pred ccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEE-cCCC----cccEEEEEEcCCCcEecccccCCceeeEEEc
Confidence 4667788773222223322234455555544 67788865 5554 6789999999999999999999999999999
Q ss_pred CCE--EEEEeC---CeEEEEEcCCCCEEeEEec
Q psy3712 81 RDK--IVVVLE---GLIKVYTFIQCPQQLHIYL 108 (109)
Q Consensus 81 r~~--lvVvl~---~~i~vy~~~~~~~ll~~~~ 108 (109)
|.. |+.... +.|.||+.+ .|++++.+.
T Consensus 397 k~~kEi~sthG~s~n~i~lw~~p-s~~~~~~l~ 428 (484)
T KOG0305|consen 397 KKYKELLSTHGYSENQITLWKYP-SMKLVAELL 428 (484)
T ss_pred CCCCEEEEecCCCCCcEEEEecc-ccceeeeec
Confidence 998 877764 799999999 588887653
No 7
>KOG1036|consensus
Probab=96.91 E-value=0.021 Score=44.76 Aligned_cols=73 Identities=18% Similarity=0.393 Sum_probs=60.3
Q ss_pred CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCCEEEE-EeCCeEEEEEcCCC
Q psy3712 22 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVV-VLEGLIKVYTFIQC 100 (109)
Q Consensus 22 ~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~lvV-vl~~~i~vy~~~~~ 100 (109)
+++++..+|-.+-.|.+ |.|| | .+++++||.++...+..++=+..|=.+-++.++|+| .-+.+|.+|++. +
T Consensus 93 h~~~i~ci~~~~~~~~v--Isgs----W-D~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLR-n 164 (323)
T KOG1036|consen 93 HDEGIRCIEYSYEVGCV--ISGS----W-DKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLR-N 164 (323)
T ss_pred CCCceEEEEeeccCCeE--EEcc----c-CccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcc-c
Confidence 36799999998888876 3333 2 367999999998888888888899999999999999 677999999999 4
Q ss_pred CE
Q psy3712 101 PQ 102 (109)
Q Consensus 101 ~~ 102 (109)
|+
T Consensus 165 ~~ 166 (323)
T KOG1036|consen 165 LD 166 (323)
T ss_pred cc
Confidence 55
No 8
>KOG0310|consensus
Probab=96.84 E-value=0.019 Score=47.16 Aligned_cols=92 Identities=22% Similarity=0.326 Sum_probs=68.8
Q ss_pred EEEeecCCceeeeeec-CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCC-CCcEEEEEE-ccCceeEEEecC-
Q psy3712 6 RIYNCDPLKEKERQDF-TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL-KKQVVICLE-FNAPVKGVRLRR- 81 (109)
Q Consensus 6 ~Iy~~~P~~~~~~~~~-~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~-~~~~i~el~-f~s~V~~V~l~r- 81 (109)
|.|.+--..... .++ ...+|.-|--|..-++||.-|| |.|+|||.- -++.+++.. +..+|..+++..
T Consensus 179 rl~DtR~~~~~v-~elnhg~pVe~vl~lpsgs~iasAgG--------n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~ 249 (487)
T KOG0310|consen 179 RLWDTRSLTSRV-VELNHGCPVESVLALPSGSLIASAGG--------NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASD 249 (487)
T ss_pred EEEEeccCCcee-EEecCCCceeeEEEcCCCCEEEEcCC--------CeEEEEEecCCceehhhhhcccceEEEEEeecC
Confidence 555554442221 122 3558888888888889988887 679999998 566677666 899999999987
Q ss_pred -C-EEEEEeCCeEEEEEcCCCCEEeEEe
Q psy3712 82 -D-KIVVVLEGLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 82 -~-~lvVvl~~~i~vy~~~~~~~ll~~~ 107 (109)
. .+-..|+..|.||+.. +.|.+|+.
T Consensus 250 ~~rLlS~sLD~~VKVfd~t-~~Kvv~s~ 276 (487)
T KOG0310|consen 250 STRLLSGSLDRHVKVFDTT-NYKVVHSW 276 (487)
T ss_pred CceEeecccccceEEEEcc-ceEEEEee
Confidence 3 4567889999999987 68988875
No 9
>KOG0278|consensus
Probab=96.71 E-value=0.022 Score=44.10 Aligned_cols=78 Identities=22% Similarity=0.371 Sum_probs=63.2
Q ss_pred CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeCCeEEEEEcCC
Q psy3712 22 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLEGLIKVYTFIQ 99 (109)
Q Consensus 22 ~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~~~i~vy~~~~ 99 (109)
..|+|.-+.-+..-+.|. .+. ..+.|++||..+++++-.|+|+++|.+..++.+ .|.++-...|-.++-.
T Consensus 142 htg~Ir~v~wc~eD~~iL-SSa------dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdak- 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCHEDKCIL-SSA------DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAK- 213 (334)
T ss_pred CCCcceeEEEeccCceEE-eec------cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccc-
Confidence 368999999998888773 322 347899999999999999999999999999876 5556666899999887
Q ss_pred CCEEeEEe
Q psy3712 100 CPQQLHIY 107 (109)
Q Consensus 100 ~~~ll~~~ 107 (109)
+.++|.++
T Consensus 214 sf~~lKs~ 221 (334)
T KOG0278|consen 214 SFGLLKSY 221 (334)
T ss_pred cccceeec
Confidence 57777765
No 10
>KOG1645|consensus
Probab=96.61 E-value=0.009 Score=48.47 Aligned_cols=57 Identities=21% Similarity=0.399 Sum_probs=51.9
Q ss_pred cEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC----EEEEEeCCeEEEEEcC
Q psy3712 36 NYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD----KIVVVLEGLIKVYTFI 98 (109)
Q Consensus 36 n~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~----~lvVvl~~~i~vy~~~ 98 (109)
|+|..+|+ +.|.+++||..+...+-.+.+..||++|+-..- .|.+.++++++||.-+
T Consensus 401 n~iv~~gd------~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 401 NYIVVVGD------STNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cEEEEecC------CcceeEEeccchhheeeecccCcceeecceeecCCcchhhheecceEEEEecC
Confidence 77777776 679999999999999999999999999998877 9999999999999865
No 11
>PTZ00420 coronin; Provisional
Probab=96.31 E-value=0.13 Score=43.41 Aligned_cols=78 Identities=8% Similarity=0.090 Sum_probs=54.7
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEe-CCeEEEEEcCC
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVL-EGLIKVYTFIQ 99 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl-~~~i~vy~~~~ 99 (109)
.+.+..+..-...+.+++.|+. .+.++|||..+++.+.++..+..|.++.++.+ .+++.- +..|+||+..+
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~------DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGF------DSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeC------CCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCC
Confidence 3456666665544444344432 36899999999999989988899999999753 444443 56899999984
Q ss_pred CCEEeEEe
Q psy3712 100 CPQQLHIY 107 (109)
Q Consensus 100 ~~~ll~~~ 107 (109)
.+.++++
T Consensus 199 -g~~i~tl 205 (568)
T PTZ00420 199 -QEIASSF 205 (568)
T ss_pred -CcEEEEE
Confidence 5666554
No 12
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=96.27 E-value=0.023 Score=47.30 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=49.7
Q ss_pred ceEEEEeC---CCCcEEEEEEccCceeEEEecCCEEEEEe--------------------------CCeEEEEEcCCC--
Q psy3712 52 NRVMIWDD---LKKQVVICLEFNAPVKGVRLRRDKIVVVL--------------------------EGLIKVYTFIQC-- 100 (109)
Q Consensus 52 n~v~IwDd---~~~~~i~el~f~s~V~~V~l~r~~lvVvl--------------------------~~~i~vy~~~~~-- 100 (109)
++|.|+|. .+.+.+.+++++..+..+-+..++|+|+. ..++.+|+++++
T Consensus 31 ~~l~Iida~p~~~~~~~s~I~~~~~~~eLyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~vYDIsD~~~ 110 (521)
T PF09826_consen 31 GRLYIIDAYPAEEMKVVSRIDLDGSPQELYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYKSSTKITVYDISDPSN 110 (521)
T ss_pred CEEEEEECCCchhceEEEEEecCCChhheEEcCCEEEEEEeccccccccccccccccccccccCCceeEEEEEECCCCCC
Confidence 68999998 68899999999999999999999999999 457999999865
Q ss_pred CEEeEEe
Q psy3712 101 PQQLHIY 107 (109)
Q Consensus 101 ~~ll~~~ 107 (109)
|+++.++
T Consensus 111 P~~~~~~ 117 (521)
T PF09826_consen 111 PKLLREI 117 (521)
T ss_pred ceEEEEE
Confidence 8888764
No 13
>KOG0274|consensus
Probab=96.25 E-value=0.13 Score=42.98 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=55.0
Q ss_pred EEeecCCceeee-eecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEE-ccCceeEEEecCCEE
Q psy3712 7 IYNCDPLKEKER-QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKI 84 (109)
Q Consensus 7 Iy~~~P~~~~~~-~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~-f~s~V~~V~l~r~~l 84 (109)
+|++.+...... -+-+.|++.-++|.+..+++.-.. ....+++||+.+++-+.-+. -.+.|+-+.+.+..+
T Consensus 232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS-------~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~ 304 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGS-------TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLL 304 (537)
T ss_pred EeecccceEEEeeccCCCCCceeEEEecCCCEEEEEe-------cCCcEEeEecCCCcEEEEecCCCceEEEEEccCceE
Confidence 555555544433 222467888888888777774432 23556777777777666655 344555555555544
Q ss_pred EE-EeCCeEEEEEcCCCCEEeEEe
Q psy3712 85 VV-VLEGLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 85 vV-vl~~~i~vy~~~~~~~ll~~~ 107 (109)
+= ..++.|.||+++ +++.++++
T Consensus 305 ~sgs~D~tVkVW~v~-n~~~l~l~ 327 (537)
T KOG0274|consen 305 VSGSRDNTVKVWDVT-NGACLNLL 327 (537)
T ss_pred eeccCCceEEEEecc-CcceEEEe
Confidence 44 366777777776 45666543
No 14
>PTZ00421 coronin; Provisional
Probab=96.04 E-value=0.39 Score=39.68 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=53.5
Q ss_pred CCCEEEEEEcCCc-cEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEc-cCceeEEEecCC--EEEEEe-CCeEEEEEc
Q psy3712 23 DGGLGHVEMLFRC-NYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF-NAPVKGVRLRRD--KIVVVL-EGLIKVYTF 97 (109)
Q Consensus 23 ~g~v~~veml~~t-n~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f-~s~V~~V~l~r~--~lvVvl-~~~i~vy~~ 97 (109)
.+.+..+..-... |++|-.| ..+.|+|||..+++.+..+.- ...|.++.++.+ .++... +..|+||+.
T Consensus 125 ~~~V~~l~f~P~~~~iLaSgs-------~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~ 197 (493)
T PTZ00421 125 TKKVGIVSFHPSAMNVLASAG-------ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDP 197 (493)
T ss_pred CCcEEEEEeCcCCCCEEEEEe-------CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEEC
Confidence 4567777666543 5665443 246899999999998888774 567999999765 455444 468999999
Q ss_pred CCCCEEeEE
Q psy3712 98 IQCPQQLHI 106 (109)
Q Consensus 98 ~~~~~ll~~ 106 (109)
.+ .+.+++
T Consensus 198 rs-g~~v~t 205 (493)
T PTZ00421 198 RD-GTIVSS 205 (493)
T ss_pred CC-CcEEEE
Confidence 84 555554
No 15
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.01 E-value=0.19 Score=38.35 Aligned_cols=96 Identities=14% Similarity=0.306 Sum_probs=62.4
Q ss_pred ceEEEeecCCceeeeeecCCC--CEEEEEEcCC------ccEEEEEcCCC----CCCCCCceEEEEeCCCC-------cE
Q psy3712 4 GFRIYNCDPLKEKERQDFTDG--GLGHVEMLFR------CNYLALVGGGT----HPKYPNNRVMIWDDLKK-------QV 64 (109)
Q Consensus 4 Gf~Iy~~~P~~~~~~~~~~~g--~v~~veml~~------tn~ialVg~g~----~p~~~~n~v~IwDd~~~-------~~ 64 (109)
..++++-..+....+.+++.. ..++..+-+. .+++ +||.+. ++.-..-.+.+++-.+. +.
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~i-vVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYI-VVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEE-EEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEE-EEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 356665555655544444322 2333333322 4555 666542 22112267999998885 45
Q ss_pred EEEEEccCceeEEEecCCEEEEEeCCeEEEEEcCCC
Q psy3712 65 VICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQC 100 (109)
Q Consensus 65 i~el~f~s~V~~V~l~r~~lvVvl~~~i~vy~~~~~ 100 (109)
+.+.+++.+|.++.--+++++++..++|++|++.+.
T Consensus 82 i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~ 117 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNS 117 (321)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETT
T ss_pred EEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCc
Confidence 678999999999999999999999999999999853
No 16
>KOG0643|consensus
Probab=96.00 E-value=0.25 Score=38.53 Aligned_cols=72 Identities=17% Similarity=0.323 Sum_probs=52.8
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeCC------eEEE
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLEG------LIKV 94 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~~------~i~v 94 (109)
.|.|=.+..=-.|..+ +-|. +.+..++||.++|+.++.+.++++|+.+-++.+ .+++++++ .|.+
T Consensus 52 tGavW~~Did~~s~~l-iTGS------AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~ 124 (327)
T KOG0643|consen 52 TGAVWCCDIDWDSKHL-ITGS------ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSV 124 (327)
T ss_pred CceEEEEEecCCccee-eecc------ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEE
Confidence 3444445554455444 4444 457889999999999999999999999998875 66677765 5788
Q ss_pred EEcCCCC
Q psy3712 95 YTFIQCP 101 (109)
Q Consensus 95 y~~~~~~ 101 (109)
|++.+.+
T Consensus 125 fdi~~~~ 131 (327)
T KOG0643|consen 125 FDIRDDS 131 (327)
T ss_pred EEccCCh
Confidence 9888543
No 17
>KOG0274|consensus
Probab=95.98 E-value=0.29 Score=41.03 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=50.3
Q ss_pred CCceEEEEeCCCCcEEEEEE-ccCceeEEEecCCEEEEEeCCe-EEEEEcCCCCEEeEEe
Q psy3712 50 PNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVLEGL-IKVYTFIQCPQQLHIY 107 (109)
Q Consensus 50 ~~n~v~IwDd~~~~~i~el~-f~s~V~~V~l~r~~lvVvl~~~-i~vy~~~~~~~ll~~~ 107 (109)
-++.|++||..+++.+.-+. -..+|..|.++.+.+|....+. |.||+.. +.+.++++
T Consensus 309 ~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~-~~~cl~sl 367 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPR-TGKCLKSL 367 (537)
T ss_pred CCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhh-hceeeeee
Confidence 46899999999999998888 8899999999999999888755 9999998 67888765
No 18
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.80 E-value=0.67 Score=39.86 Aligned_cols=88 Identities=8% Similarity=0.068 Sum_probs=59.2
Q ss_pred eEEEeecCCceeeeeecCCCCEEEEEEcC-CccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEec---
Q psy3712 5 FRIYNCDPLKEKERQDFTDGGLGHVEMLF-RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLR--- 80 (109)
Q Consensus 5 f~Iy~~~P~~~~~~~~~~~g~v~~veml~-~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~--- 80 (109)
.++|+++.........-+.++|.-+..-. +.+++|-.| ....++|||..+++.+..+....+|..+.+.
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs-------~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~ 629 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS-------DDGSVKLWSINQGVSIGTIKTKANICCVQFPSES 629 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc-------CCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCC
Confidence 46676655443322222345666666653 445554443 2367999999999999999988899999884
Q ss_pred CCEEEEEeC-CeEEEEEcCC
Q psy3712 81 RDKIVVVLE-GLIKVYTFIQ 99 (109)
Q Consensus 81 r~~lvVvl~-~~i~vy~~~~ 99 (109)
...+++... ..|++|++.+
T Consensus 630 g~~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 630 GRSLAFGSADHKVYYYDLRN 649 (793)
T ss_pred CCEEEEEeCCCeEEEEECCC
Confidence 345666554 6999999974
No 19
>KOG0279|consensus
Probab=95.65 E-value=0.19 Score=39.26 Aligned_cols=87 Identities=16% Similarity=0.199 Sum_probs=68.4
Q ss_pred eEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCCEE
Q psy3712 5 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKI 84 (109)
Q Consensus 5 f~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~l 84 (109)
.+|+|.+.++.+...-=+.|-+..++.-.+-++.|- ||+. -+..+||...++.+-.++-..+|.++.++.+|.
T Consensus 174 vKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas--Ggkd-----g~~~LwdL~~~k~lysl~a~~~v~sl~fspnry 246 (315)
T KOG0279|consen 174 VKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS--GGKD-----GEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRY 246 (315)
T ss_pred EEEEccCCcchhhccccccccEEEEEECCCCCEEec--CCCC-----ceEEEEEccCCceeEeccCCCeEeeEEecCCce
Confidence 578888888775332223567777888888888876 4443 469999999999988899999999999999987
Q ss_pred EEE--eCCeEEEEEcC
Q psy3712 85 VVV--LEGLIKVYTFI 98 (109)
Q Consensus 85 vVv--l~~~i~vy~~~ 98 (109)
..+ .+.+|.||++.
T Consensus 247 wL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 247 WLCAATATSIKIWDLE 262 (315)
T ss_pred eEeeccCCceEEEecc
Confidence 655 55899999997
No 20
>PTZ00421 coronin; Provisional
Probab=95.30 E-value=1.1 Score=37.00 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=55.0
Q ss_pred eEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCce--eEEE-ecC
Q psy3712 5 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPV--KGVR-LRR 81 (109)
Q Consensus 5 f~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V--~~V~-l~r 81 (109)
.+||+.+.........-..+.+.-+..-...+++|..+. .++++|||.++++.+.++...... ..+. ...
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~-------Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK-------DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecC-------CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC
Confidence 577777655443222213456777777777777765542 368999999999999888766532 2222 223
Q ss_pred -CEEEEEe-----CCeEEEEEcCC
Q psy3712 82 -DKIVVVL-----EGLIKVYTFIQ 99 (109)
Q Consensus 82 -~~lvVvl-----~~~i~vy~~~~ 99 (109)
+.++.+- ++.|.+|++.+
T Consensus 223 ~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 223 KDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CCeEEEEecCCCCCCeEEEEeCCC
Confidence 3444332 46899999974
No 21
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.11 E-value=0.83 Score=32.87 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=43.5
Q ss_pred CceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEE--eCCeEEEEEcCCCCEEeEEe
Q psy3712 51 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVV--LEGLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 51 ~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVv--l~~~i~vy~~~~~~~ll~~~ 107 (109)
.+.+.+||.++++.+..+.....+..+.++.+ +|++. .+++|.||++. +.+.+.++
T Consensus 228 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~-~~~~~~~~ 287 (300)
T TIGR03866 228 ANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA-ALKVIKSI 287 (300)
T ss_pred CCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC-CCcEEEEE
Confidence 36799999999888877776778888888664 66665 36899999998 56766554
No 22
>PTZ00420 coronin; Provisional
Probab=95.06 E-value=1.8 Score=36.56 Aligned_cols=87 Identities=13% Similarity=0.151 Sum_probs=55.0
Q ss_pred eEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCce---eEEEe--
Q psy3712 5 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPV---KGVRL-- 79 (109)
Q Consensus 5 f~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V---~~V~l-- 79 (109)
.+||+........... ..+.+..+..-...+++|..+ ..++++|||.++++.+.++.-.+.. +.+-+
T Consensus 150 IrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s-------~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 150 VNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC-------VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred EEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe-------cCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence 5677666554433222 234566677777778876544 2368999999999999888765532 23332
Q ss_pred ---cCCEEEEEeCC-----eEEEEEcCC
Q psy3712 80 ---RRDKIVVVLEG-----LIKVYTFIQ 99 (109)
Q Consensus 80 ---~r~~lvVvl~~-----~i~vy~~~~ 99 (109)
..++++.+-.+ .|.+|++.+
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 22455554433 699999884
No 23
>KOG0306|consensus
Probab=94.90 E-value=0.37 Score=42.03 Aligned_cols=74 Identities=19% Similarity=0.208 Sum_probs=50.2
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCC-------C-c-----EEEEEEccCceeEEEec--CCEEEEE
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK-------K-Q-----VVICLEFNAPVKGVRLR--RDKIVVV 87 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~-------~-~-----~i~el~f~s~V~~V~l~--r~~lvVv 87 (109)
+|-+.-+....+---++..| +.+.|++||-+- + + -...|+++..|+.|+.+ ...++|.
T Consensus 454 dgaIWsi~~~pD~~g~vT~s-------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGS-------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred ccceeeeeecCCCCceEEec-------CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE
Confidence 44444444444444443433 568899999542 1 1 12578999999999999 5577776
Q ss_pred eC-CeEEEEEcCCCCEEe
Q psy3712 88 LE-GLIKVYTFIQCPQQL 104 (109)
Q Consensus 88 l~-~~i~vy~~~~~~~ll 104 (109)
|. +.+.||-+. ++|..
T Consensus 527 LLdnTVkVyflD-tlKFf 543 (888)
T KOG0306|consen 527 LLDNTVKVYFLD-TLKFF 543 (888)
T ss_pred eccCeEEEEEec-ceeee
Confidence 65 899999997 67754
No 24
>KOG0289|consensus
Probab=94.58 E-value=0.84 Score=37.67 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=53.4
Q ss_pred EEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEc-cCceeEEEecCC--EEEEEeCCe-EEEEEcCCCC
Q psy3712 26 LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF-NAPVKGVRLRRD--KIVVVLEGL-IKVYTFIQCP 101 (109)
Q Consensus 26 v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f-~s~V~~V~l~r~--~lvVvl~~~-i~vy~~~~~~ 101 (109)
+..++.-.+.+|++. |. +.-.|+|||.+.+..++.+-= .++|++|.++-+ +|++..++. |.+|++.+ .
T Consensus 350 ~ts~~fHpDgLifgt---gt----~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK-l 421 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGT---GT----PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK-L 421 (506)
T ss_pred eEEeeEcCCceEEec---cC----CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh-h
Confidence 444555556655533 21 456899999999886665322 348999999888 788888876 99999994 6
Q ss_pred EEeEEec
Q psy3712 102 QQLHIYL 108 (109)
Q Consensus 102 ~ll~~~~ 108 (109)
+...+|.
T Consensus 422 ~n~kt~~ 428 (506)
T KOG0289|consen 422 KNFKTIQ 428 (506)
T ss_pred cccceee
Confidence 7776653
No 25
>KOG0266|consensus
Probab=94.40 E-value=1.2 Score=36.12 Aligned_cols=92 Identities=14% Similarity=0.207 Sum_probs=61.1
Q ss_pred eEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcE-----EEEEEccCceeEEEe
Q psy3712 5 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV-----VICLEFNAPVKGVRL 79 (109)
Q Consensus 5 f~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~-----i~el~f~s~V~~V~l 79 (109)
.||+++.-.+..-.-..+.+++..+..=.+.++++.-+ ..+.++|||..+++. ....+.++++..++.
T Consensus 270 vriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s-------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~f 342 (456)
T KOG0266|consen 270 VRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS-------YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQF 342 (456)
T ss_pred EEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC-------CCccEEEEECCCCceeeeecccCCCCCCceeEEEE
Confidence 46777766433322223466888888888888875532 257899999999993 233344446899999
Q ss_pred cCC--EEEEEeCC-eEEEEEcCCCCEEe
Q psy3712 80 RRD--KIVVVLEG-LIKVYTFIQCPQQL 104 (109)
Q Consensus 80 ~r~--~lvVvl~~-~i~vy~~~~~~~ll 104 (109)
+++ +++++.++ .+.+|++.. .+.+
T Consensus 343 sp~~~~ll~~~~d~~~~~w~l~~-~~~~ 369 (456)
T KOG0266|consen 343 SPNGKYLLSASLDRTLKLWDLRS-GKSV 369 (456)
T ss_pred CCCCcEEEEecCCCeEEEEEccC-Ccce
Confidence 655 56666665 999999983 4433
No 26
>PF08366 LLGL: LLGL2; InterPro: IPR013577 This domain is found in lethal giant larvae homologue 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn []. It has been identified in eukaryotes and tends to be found together with WD repeats (IPR001680 from INTERPRO).
Probab=94.15 E-value=1.1 Score=29.96 Aligned_cols=64 Identities=19% Similarity=0.283 Sum_probs=50.0
Q ss_pred CCccEEEEEcCCCCCCCCC-ceEEEEeCCCCcEEEEEEccCceeEEEecCC-----------EEEEEeCCeEEEEEcCC
Q psy3712 33 FRCNYLALVGGGTHPKYPN-NRVMIWDDLKKQVVICLEFNAPVKGVRLRRD-----------KIVVVLEGLIKVYTFIQ 99 (109)
Q Consensus 33 ~~tn~ialVg~g~~p~~~~-n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~-----------~lvVvl~~~i~vy~~~~ 99 (109)
.+.+++.+.||..+.+|.. +.|.|-- ++...-++|.|+|.+...-.+ -++|.+++.+-+.++.+
T Consensus 26 ~~~~~iiFsGGmp~~~ygdr~~vTV~~---g~~~~~ldf~s~VIDF~~i~~~~~~~e~~~P~alvVL~e~eLVvIDL~t 101 (105)
T PF08366_consen 26 NGEPFIIFSGGMPRASYGDRHCVTVMQ---GKTHVVLDFTSRVIDFFTICESPWPNEFQDPYALVVLLEEELVVIDLQT 101 (105)
T ss_pred CCCcEEEEeCCccccccCCCceEEEEe---CCEEEEEEcCCceEEEEEEcCCCCccccCCCcEEEEEEcCcEEEEECCC
Confidence 4456899999988887664 5566654 677778899999998766444 59999999999999983
No 27
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.13 E-value=0.75 Score=33.91 Aligned_cols=53 Identities=6% Similarity=0.129 Sum_probs=43.7
Q ss_pred EEEEeCCCCcEE--EEEEccCceeEEEecCCEEEEEeCCeEEEEEcCCCCEEeEEe
Q psy3712 54 VMIWDDLKKQVV--ICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 54 v~IwDd~~~~~i--~el~f~s~V~~V~l~r~~lvVvl~~~i~vy~~~~~~~ll~~~ 107 (109)
+-+|=+..|+.. ..+++++...++.....+++++.++.|.||++.+ -++++++
T Consensus 209 ~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~~-~~lvQ~i 263 (275)
T PF00780_consen 209 IGVFVNKNGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLET-GELVQTI 263 (275)
T ss_pred eEEEEcCCCCcCcccEEEcCCchhEEEEECCEEEEECCCEEEEEECcC-CcEEEEE
Confidence 455555566554 5999999999999999999999999999999994 5777765
No 28
>KOG0281|consensus
Probab=93.94 E-value=0.3 Score=39.50 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=42.2
Q ss_pred CCceEEEEeCCCCcEEEEEE-ccCceeEEEecCCEEEEEeC-CeEEEEEcCC
Q psy3712 50 PNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVLE-GLIKVYTFIQ 99 (109)
Q Consensus 50 ~~n~v~IwDd~~~~~i~el~-f~s~V~~V~l~r~~lvVvl~-~~i~vy~~~~ 99 (109)
|...|+|||..+++++..+- --..|+.++++-+.+|-+.+ .+|.||++..
T Consensus 255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~s 306 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMAS 306 (499)
T ss_pred CCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccC
Confidence 45689999999999987544 35579999999999999887 5799999984
No 29
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.87 E-value=2.2 Score=32.49 Aligned_cols=75 Identities=11% Similarity=0.154 Sum_probs=53.1
Q ss_pred eecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCc---EEEEEEccCceeEEEecCCEEEEEeC-CeEEE
Q psy3712 19 QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ---VVICLEFNAPVKGVRLRRDKIVVVLE-GLIKV 94 (109)
Q Consensus 19 ~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~---~i~el~f~s~V~~V~l~r~~lvVvl~-~~i~v 94 (109)
.+. .|++.-+..+.. .++|-+| +++.+|+-..++ ..+++.-+..|..+...+++++|.-. +++.+
T Consensus 85 ~~~-~g~V~ai~~~~~-~lv~~~g---------~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 85 TEV-KGPVTAICSFNG-RLVVAVG---------NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSL 153 (321)
T ss_dssp EEE-SS-EEEEEEETT-EEEEEET---------TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEE
T ss_pred Eee-cCcceEhhhhCC-EEEEeec---------CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEE
Confidence 444 677777777644 4777776 689999977666 34566667789999999998888764 89999
Q ss_pred EEcCCCCEEe
Q psy3712 95 YTFIQCPQQL 104 (109)
Q Consensus 95 y~~~~~~~ll 104 (109)
+.+....+.+
T Consensus 154 ~~~~~~~~~l 163 (321)
T PF03178_consen 154 LRYDEENNKL 163 (321)
T ss_dssp EEEETTTE-E
T ss_pred EEEEccCCEE
Confidence 9887544433
No 30
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.83 E-value=0.99 Score=31.54 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=44.0
Q ss_pred ceEEEEeCC--------CCcEEEEEEccCceeEE---Ee----cCCEEEEEeCCeEEEEEcCCCCEE
Q psy3712 52 NRVMIWDDL--------KKQVVICLEFNAPVKGV---RL----RRDKIVVVLEGLIKVYTFIQCPQQ 103 (109)
Q Consensus 52 n~v~IwDd~--------~~~~i~el~f~s~V~~V---~l----~r~~lvVvl~~~i~vy~~~~~~~l 103 (109)
.||.|+|.. ++..+..|.+..+|.++ ++ .+|-|+|-..+.+-+|+..++-.+
T Consensus 20 gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~ 86 (136)
T PF14781_consen 20 GKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDL 86 (136)
T ss_pred CEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchh
Confidence 689999877 56688999999999988 44 489999999999999999876443
No 31
>KOG0291|consensus
Probab=93.71 E-value=1.3 Score=38.92 Aligned_cols=77 Identities=22% Similarity=0.297 Sum_probs=59.0
Q ss_pred CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCC-cEEEEEEccCceeEEEec--CCEEEEEeCC-eEEEEEc
Q psy3712 22 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKK-QVVICLEFNAPVKGVRLR--RDKIVVVLEG-LIKVYTF 97 (109)
Q Consensus 22 ~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~-~~i~el~f~s~V~~V~l~--r~~lvVvl~~-~i~vy~~ 97 (109)
++|+|.-..|=...+.+|= +. =.+.|+|||.-.. ..+-+++-++.+++|.++ .+.++|++-+ .|-+|+.
T Consensus 477 HEgPVs~l~f~~~~~~LaS--~S-----WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 477 HEGPVSGLSFSPDGSLLAS--GS-----WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred CCCcceeeEEccccCeEEe--cc-----ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 3688888777777775542 22 2478999998754 456689999999999999 7789998876 9999999
Q ss_pred CCCCEEeEE
Q psy3712 98 IQCPQQLHI 106 (109)
Q Consensus 98 ~~~~~ll~~ 106 (109)
.. ..+..+
T Consensus 550 ~~-~~q~~~ 557 (893)
T KOG0291|consen 550 KE-AVQVGS 557 (893)
T ss_pred hh-ceeecc
Confidence 84 566544
No 32
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.54 E-value=0.33 Score=39.70 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=40.5
Q ss_pred EEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeCCeEEEEEcC
Q psy3712 29 VEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLEGLIKVYTFI 98 (109)
Q Consensus 29 veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~~~i~vy~~~ 98 (109)
++-+|.-.++++-+. +.+.+||-.+++.+.+++.+. |+.|-.+.+ +++++.++.++|+++.
T Consensus 111 ~~~If~G~LL~~~~~--------~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~ 173 (443)
T PF04053_consen 111 VEKIFGGNLLGVKSS--------DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYN 173 (443)
T ss_dssp EEEEE-SSSEEEEET--------TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-
T ss_pred cceEEcCcEEEEECC--------CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEec
Confidence 444444556655543 359999999999999999986 999999955 9999999999999886
No 33
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=93.35 E-value=2.2 Score=30.70 Aligned_cols=77 Identities=14% Similarity=0.244 Sum_probs=54.3
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEe----CCeEEEEE
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVL----EGLIKVYT 96 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl----~~~i~vy~ 96 (109)
.|+|.-++=-.+.+-+|++-| ..|+++.+||.+ .+.+.++. ..++-.|+.+++ +++++- ...+.+|+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g-----~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYG-----SMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCceEEEEECcCCCEEEEEEc-----cCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 456777777788888887754 245699999997 66666654 457778999864 444432 34699999
Q ss_pred cCCCCEEeEEe
Q psy3712 97 FIQCPQQLHIY 107 (109)
Q Consensus 97 ~~~~~~ll~~~ 107 (109)
.. +.+.+.++
T Consensus 132 ~~-~~~~i~~~ 141 (194)
T PF08662_consen 132 VR-KKKKISTF 141 (194)
T ss_pred CC-CCEEeecc
Confidence 98 57877653
No 34
>KOG0284|consensus
Probab=93.28 E-value=0.068 Score=43.53 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=51.4
Q ss_pred CEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEE-EccCceeEEEecCCE--EEEEeC-CeEEEEEcCCC
Q psy3712 25 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICL-EFNAPVKGVRLRRDK--IVVVLE-GLIKVYTFIQC 100 (109)
Q Consensus 25 ~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el-~f~s~V~~V~l~r~~--lvVvl~-~~i~vy~~~~~ 100 (109)
.+..+.--..-++|| +|+ ..|-|++||.++++.++.+ .++..|++++++++. |.-+-+ ..+.+|++. .
T Consensus 224 dVksvdWHP~kgLia-sgs------kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR-~ 295 (464)
T KOG0284|consen 224 DVKSVDWHPTKGLIA-SGS------KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR-T 295 (464)
T ss_pred CcceeccCCccceeE-Ecc------CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehh-H
Confidence 444444444455553 333 2368999999999999855 567789999998873 444433 578899998 6
Q ss_pred CEEeEEe
Q psy3712 101 PQQLHIY 107 (109)
Q Consensus 101 ~~ll~~~ 107 (109)
|+.|.++
T Consensus 296 mkEl~~~ 302 (464)
T KOG0284|consen 296 MKELFTY 302 (464)
T ss_pred hHHHHHh
Confidence 8766543
No 35
>KOG0276|consensus
Probab=93.08 E-value=0.32 Score=41.78 Aligned_cols=54 Identities=22% Similarity=0.510 Sum_probs=44.5
Q ss_pred eEEEEeCCCCcEEEEEEcc-CceeEEEe--cCCEEEEEeCC-eEEEEEcCCCCEEeEEe
Q psy3712 53 RVMIWDDLKKQVVICLEFN-APVKGVRL--RRDKIVVVLEG-LIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 53 ~v~IwDd~~~~~i~el~f~-s~V~~V~l--~r~~lvVvl~~-~i~vy~~~~~~~ll~~~ 107 (109)
.|.|||..++..+..++-. .||++-++ +++.+++-.+| .|+||+.+ +++++++|
T Consensus 36 ~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn-t~ekV~~F 93 (794)
T KOG0276|consen 36 DVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN-TGEKVKTF 93 (794)
T ss_pred eeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc-cceeeEEe
Confidence 5899999999999888764 48887654 67777777774 79999998 79999986
No 36
>KOG0308|consensus
Probab=93.06 E-value=0.49 Score=40.65 Aligned_cols=64 Identities=20% Similarity=0.391 Sum_probs=50.0
Q ss_pred EEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccC-ceeEEEecCCE---EEEEeCCeEEEEEcCCCCEEeEEe
Q psy3712 38 LALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA-PVKGVRLRRDK---IVVVLEGLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 38 ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s-~V~~V~l~r~~---lvVvl~~~i~vy~~~~~~~ll~~~ 107 (109)
..+|+|| .++.+++||.++++.++.|.=.+ .|+.+.++.|- |-...+..|.+|++.+ -+=++||
T Consensus 184 t~ivsGg-----tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq-QrCl~T~ 251 (735)
T KOG0308|consen 184 TIIVSGG-----TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ-QRCLATY 251 (735)
T ss_pred eEEEecC-----cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc-cceeeeE
Confidence 4577877 46899999999999999998543 79999999875 4444557899999994 4666665
No 37
>KOG0315|consensus
Probab=93.05 E-value=2.5 Score=32.92 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=41.1
Q ss_pred ceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeC-CeEEEEEcCCC
Q psy3712 52 NRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLE-GLIKVYTFIQC 100 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~-~~i~vy~~~~~ 100 (109)
-.++|||-+.-..-.++++++||-.|.+..+ .|++.-+ ..|+||++..+
T Consensus 105 gt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 105 GTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred ceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 5799999999777779999999999999765 6777666 68999999853
No 38
>KOG0266|consensus
Probab=93.04 E-value=3.7 Score=33.25 Aligned_cols=90 Identities=20% Similarity=0.249 Sum_probs=61.5
Q ss_pred cceEEEee-cCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccC-ceeEEEec
Q psy3712 3 DGFRIYNC-DPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA-PVKGVRLR 80 (109)
Q Consensus 3 ~Gf~Iy~~-~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s-~V~~V~l~ 80 (109)
.-.|||.. ++......-.-+...+.-+..-...|+++-.+. .+.++|||.++++.+..++-.+ .|.++-++
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~-------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSD-------DGTVRIWDVRTGECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecC-------CCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence 34677877 553332111112445666666666777755543 4789999999999999999877 78889888
Q ss_pred CCEEEEEe---CCeEEEEEcCC
Q psy3712 81 RDKIVVVL---EGLIKVYTFIQ 99 (109)
Q Consensus 81 r~~lvVvl---~~~i~vy~~~~ 99 (109)
++.=.++. +..|+||+...
T Consensus 298 ~d~~~l~s~s~d~~i~vwd~~~ 319 (456)
T KOG0266|consen 298 PDGNLLVSASYDGTIRVWDLET 319 (456)
T ss_pred CCCCEEEEcCCCccEEEEECCC
Confidence 87444443 47899999984
No 39
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.75 E-value=3 Score=30.68 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=41.4
Q ss_pred CceEEEEeCCC----C-cEEEEEEccCceeEEEecCCEEEEEeCCeEEEEEcC
Q psy3712 51 NNRVMIWDDLK----K-QVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFI 98 (109)
Q Consensus 51 ~n~v~IwDd~~----~-~~i~el~f~s~V~~V~l~r~~lvVvl~~~i~vy~~~ 98 (109)
++++.||.-.. . +...|+..|.++..+.+..+.++|...+..+++++.
T Consensus 113 kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~ 165 (275)
T PF00780_consen 113 KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLN 165 (275)
T ss_pred CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecC
Confidence 35777765443 2 678999999999999999999999999999999998
No 40
>KOG1407|consensus
Probab=92.61 E-value=1.3 Score=34.51 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=54.4
Q ss_pred eEEEeecCCceeeeeecCCCCEEEEEEc----CCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEec
Q psy3712 5 FRIYNCDPLKEKERQDFTDGGLGHVEML----FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLR 80 (109)
Q Consensus 5 f~Iy~~~P~~~~~~~~~~~g~v~~veml----~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~ 80 (109)
-+|||+++.+...... ..|.-+.|+.| -..+++|-+.|| +++++||+++++.+.+++-...=.++-.+
T Consensus 44 v~v~n~e~~r~~~~~~-~~gh~~svdql~w~~~~~d~~atas~d-------k~ir~wd~r~~k~~~~i~~~~eni~i~ws 115 (313)
T KOG1407|consen 44 VSVWNLERDRFRKELV-YRGHTDSVDQLCWDPKHPDLFATASGD-------KTIRIWDIRSGKCTARIETKGENINITWS 115 (313)
T ss_pred eEEEEecchhhhhhhc-ccCCCcchhhheeCCCCCcceEEecCC-------ceEEEEEeccCcEEEEeeccCcceEEEEc
Confidence 4789999985543222 13444455555 567888888776 67999999999999999887654444444
Q ss_pred CC--EEEEEeC-CeEEEEEcC
Q psy3712 81 RD--KIVVVLE-GLIKVYTFI 98 (109)
Q Consensus 81 r~--~lvVvl~-~~i~vy~~~ 98 (109)
.+ .++|.-. ++|-..+..
T Consensus 116 p~g~~~~~~~kdD~it~id~r 136 (313)
T KOG1407|consen 116 PDGEYIAVGNKDDRITFIDAR 136 (313)
T ss_pred CCCCEEEEecCcccEEEEEec
Confidence 32 2333222 455554444
No 41
>KOG0318|consensus
Probab=92.54 E-value=4.5 Score=34.23 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=71.5
Q ss_pred EEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEE----ccCceeEEEecC
Q psy3712 6 RIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE----FNAPVKGVRLRR 81 (109)
Q Consensus 6 ~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~----f~s~V~~V~l~r 81 (109)
.+|.=-||+.+.+...+..=+..|+--.+-+.+|-+| +..|+.|||-+++..++|++ -...|-++-.++
T Consensus 173 ~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g-------sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP 245 (603)
T KOG0318|consen 173 AFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG-------SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP 245 (603)
T ss_pred EEeeCCCeeeeecccccccceeeEEECCCCCeEEEec-------CCccEEEEcCCCccEEEEecCCCCccccEEEEEECC
Confidence 3444458877655222334566777788889999998 45799999999999999999 455899999985
Q ss_pred C---EEEEEeCCeEEEEEcCCCCEEeEEec
Q psy3712 82 D---KIVVVLEGLIKVYTFIQCPQQLHIYL 108 (109)
Q Consensus 82 ~---~lvVvl~~~i~vy~~~~~~~ll~~~~ 108 (109)
| .+-+..+..+.||+.. +-+++.++.
T Consensus 246 Ds~~~~T~SaDkt~KIWdVs-~~slv~t~~ 274 (603)
T KOG0318|consen 246 DSTQFLTVSADKTIKIWDVS-TNSLVSTWP 274 (603)
T ss_pred CCceEEEecCCceEEEEEee-ccceEEEee
Confidence 5 5556667899999999 458877764
No 42
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.43 E-value=3 Score=29.94 Aligned_cols=71 Identities=11% Similarity=0.108 Sum_probs=47.1
Q ss_pred EEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEe--CCeEEEEEcCCCCEEe
Q psy3712 29 VEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVL--EGLIKVYTFIQCPQQL 104 (109)
Q Consensus 29 veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl--~~~i~vy~~~~~~~ll 104 (109)
+..-.....++++++ ..+.+.+||..+++.+.++.....+..+.++.+ .+++.- ++++.+|++.. -+.+
T Consensus 36 l~~~~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~ 108 (300)
T TIGR03866 36 ITLSKDGKLLYVCAS------DSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIET-RKVL 108 (300)
T ss_pred eEECCCCCEEEEEEC------CCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEE
Confidence 344444455545543 246899999999988887776666667777644 555553 47899999983 4554
Q ss_pred EE
Q psy3712 105 HI 106 (109)
Q Consensus 105 ~~ 106 (109)
..
T Consensus 109 ~~ 110 (300)
T TIGR03866 109 AE 110 (300)
T ss_pred eE
Confidence 43
No 43
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=92.20 E-value=5 Score=32.01 Aligned_cols=58 Identities=7% Similarity=0.135 Sum_probs=49.4
Q ss_pred CCCceEEEEeCCCCcEEEEEEccCceeEEEecCC---EEEEEeC--CeEEEEEcCCCCEEeEEe
Q psy3712 49 YPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD---KIVVVLE--GLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 49 ~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~---~lvVvl~--~~i~vy~~~~~~~ll~~~ 107 (109)
.+-|.|.++|.++++.+.++....++-+|.+++| ++.+.-+ +.|.|++.. +.+.++++
T Consensus 276 ~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~-t~k~i~~i 338 (352)
T TIGR02658 276 TASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE-TGKELSSV 338 (352)
T ss_pred CCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECc-CCeEEeee
Confidence 3558999999999999999999999999999996 5555553 679999998 68888875
No 44
>KOG1408|consensus
Probab=91.94 E-value=1.4 Score=38.81 Aligned_cols=91 Identities=23% Similarity=0.287 Sum_probs=71.8
Q ss_pred CcceEEEeecCCceeee----eecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccC-ceeE
Q psy3712 2 EDGFRIYNCDPLKEKER----QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA-PVKG 76 (109)
Q Consensus 2 ~~Gf~Iy~~~P~~~~~~----~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s-~V~~ 76 (109)
++-.|||+++.-++.-. ++ ++|.+--+.+=.+.+++|-. ++.+.+.++|-..++-+++..=.+ .|.+
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~-~eG~lIKv~lDPSgiY~atS-------csdktl~~~Df~sgEcvA~m~GHsE~VTG 688 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRD-HEGDLIKVILDPSGIYLATS-------CSDKTLCFVDFVSGECVAQMTGHSEAVTG 688 (1080)
T ss_pred ccceEEEeccccceeeeeccccc-CCCceEEEEECCCccEEEEe-------ecCCceEEEEeccchhhhhhcCcchheee
Confidence 35679999988776421 22 36888889999999999886 467889999999999998876655 5899
Q ss_pred EEecCC---EEEEEeCCeEEEEEcCCC
Q psy3712 77 VRLRRD---KIVVVLEGLIKVYTFIQC 100 (109)
Q Consensus 77 V~l~r~---~lvVvl~~~i~vy~~~~~ 100 (109)
+++..| .|-|.-+.-|+||.++-+
T Consensus 689 ~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 689 VKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred eeecccchhheeecCCceEEEEECchh
Confidence 999865 566777789999999853
No 45
>KOG2321|consensus
Probab=91.92 E-value=1.8 Score=37.07 Aligned_cols=69 Identities=26% Similarity=0.397 Sum_probs=56.7
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCc------------eeEEEecCCEEEEEeC-
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAP------------VKGVRLRRDKIVVVLE- 89 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~------------V~~V~l~r~~lvVvl~- 89 (109)
.+++-.|+|-.--.++|. |+ ...+|-.||.+.++.+..+..++. |.+++++.+-|=++..
T Consensus 175 ~~~lN~v~in~~hgLla~-Gt------~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt 247 (703)
T KOG2321|consen 175 SGELNVVSINEEHGLLAC-GT------EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT 247 (703)
T ss_pred cccceeeeecCccceEEe-cc------cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec
Confidence 578888888877777765 43 246899999999999999999998 9999999976655543
Q ss_pred --CeEEEEEcC
Q psy3712 90 --GLIKVYTFI 98 (109)
Q Consensus 90 --~~i~vy~~~ 98 (109)
..++||++.
T Consensus 248 s~G~v~iyDLR 258 (703)
T KOG2321|consen 248 STGSVLIYDLR 258 (703)
T ss_pred cCCcEEEEEcc
Confidence 789999998
No 46
>KOG0291|consensus
Probab=91.90 E-value=5.4 Score=35.18 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=41.7
Q ss_pred eEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeCCeEEEEEcCCCCE
Q psy3712 53 RVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLEGLIKVYTFIQCPQ 102 (109)
Q Consensus 53 ~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~~~i~vy~~~~~~~ 102 (109)
....-+-.....+..+.|.++|-+|+.+++ +++|...+-+.||..++..+
T Consensus 78 ~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~ 129 (893)
T KOG0291|consen 78 RALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIK 129 (893)
T ss_pred cEEEEecccceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchh
Confidence 445555566667789999999999999999 99999999999999986433
No 47
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.41 E-value=1.4 Score=35.23 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=54.5
Q ss_pred CCEEEEEEcCCccEE-EEEcCC--CCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC---EEEEEeC--CeEEEE
Q psy3712 24 GGLGHVEMLFRCNYL-ALVGGG--THPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD---KIVVVLE--GLIKVY 95 (109)
Q Consensus 24 g~v~~veml~~tn~i-alVg~g--~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~---~lvVvl~--~~i~vy 95 (109)
||.-++..=..+|.+ .+.-.| ..=+.+-..|.+||.++++.+.++..+.++.+|.++++ +|+.+.. ..++||
T Consensus 238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVY 317 (342)
T ss_dssp -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEE
Confidence 555555554444443 333222 12255667899999999999999999999999999887 5555433 469999
Q ss_pred EcCCCCEEeEEe
Q psy3712 96 TFIQCPQQLHIY 107 (109)
Q Consensus 96 ~~~~~~~ll~~~ 107 (109)
+-. +-|++++.
T Consensus 318 D~~-tGk~~~~~ 328 (342)
T PF06433_consen 318 DAA-TGKLVRSI 328 (342)
T ss_dssp ETT-T--EEEEE
T ss_pred eCc-CCcEEeeh
Confidence 998 56888764
No 48
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=91.29 E-value=4.1 Score=29.21 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=55.7
Q ss_pred cCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEe-------CCe
Q psy3712 21 FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVL-------EGL 91 (109)
Q Consensus 21 ~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl-------~~~ 91 (109)
+..+....+.-=...+++|+.|-|. .+-.|.+||..+.+.+.+.+-+. +..+..+.+ +++.+. ++.
T Consensus 98 ~~~~~~n~i~wsP~G~~l~~~g~~n----~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng 172 (194)
T PF08662_consen 98 FGTQPRNTISWSPDGRFLVLAGFGN----LNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNG 172 (194)
T ss_pred ecCCCceEEEECCCCCEEEEEEccC----CCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceecccc
Confidence 3445565566667788999988653 23569999999999998887655 567777765 444442 678
Q ss_pred EEEEEcCCCCEEeEE
Q psy3712 92 IKVYTFIQCPQQLHI 106 (109)
Q Consensus 92 i~vy~~~~~~~ll~~ 106 (109)
+.||++.. ++++.
T Consensus 173 ~~Iw~~~G--~~l~~ 185 (194)
T PF08662_consen 173 FKIWSFQG--RLLYK 185 (194)
T ss_pred EEEEEecC--eEeEe
Confidence 89999974 55554
No 49
>KOG0302|consensus
Probab=90.98 E-value=5.7 Score=32.45 Aligned_cols=88 Identities=20% Similarity=0.379 Sum_probs=61.0
Q ss_pred ceEEEeec--CCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCC---CcEEEEEEcc-CceeEE
Q psy3712 4 GFRIYNCD--PLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK---KQVVICLEFN-APVKGV 77 (109)
Q Consensus 4 Gf~Iy~~~--P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~---~~~i~el~f~-s~V~~V 77 (109)
-+||+++- |-+-++...-.++.|..+.-=-+-+++| .||. .-.+.|||-++ +++++++++. +||..|
T Consensus 281 sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLa--sG~D-----dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsi 353 (440)
T KOG0302|consen 281 SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLA--SGGD-----DGTLSIWDLRQFKSGQPVATFKYHKAPITSI 353 (440)
T ss_pred eEEEEEecCCCccceeEeeccCCceeeEEccCCcceee--ecCC-----CceEEEEEhhhccCCCcceeEEeccCCeeEE
Confidence 46777663 3333333344577888888877777443 3443 35699999774 6789999995 589999
Q ss_pred EecC---CEEEEE-eCCeEEEEEcC
Q psy3712 78 RLRR---DKIVVV-LEGLIKVYTFI 98 (109)
Q Consensus 78 ~l~r---~~lvVv-l~~~i~vy~~~ 98 (109)
..+. .-+.+. -+++|.+|+++
T Consensus 354 eW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 354 EWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred EeccccCceEEeccCCCcEEEEEee
Confidence 9993 333333 45899999987
No 50
>KOG0310|consensus
Probab=90.75 E-value=2.7 Score=34.89 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=55.5
Q ss_pred EEEEcCCccEE-----------EEEcCCCCCCCCCceEEEEeCCCC-cEEEEEEccCceeEEEecCC--EEEEEeCCeEE
Q psy3712 28 HVEMLFRCNYL-----------ALVGGGTHPKYPNNRVMIWDDLKK-QVVICLEFNAPVKGVRLRRD--KIVVVLEGLIK 93 (109)
Q Consensus 28 ~veml~~tn~i-----------alVg~g~~p~~~~n~v~IwDd~~~-~~i~el~f~s~V~~V~l~r~--~lvVvl~~~i~ 93 (109)
.+++...+.++ .+|.||= ..+|++||.+.. ..+.|+....||-+|..-.. .|+-+-.++|.
T Consensus 146 ~~~l~~htDYVR~g~~~~~~~hivvtGsY-----Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vk 220 (487)
T KOG0310|consen 146 QAELSGHTDYVRCGDISPANDHIVVTGSY-----DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVK 220 (487)
T ss_pred EEEecCCcceeEeeccccCCCeEEEecCC-----CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEE
Confidence 66777777776 1344442 368999999987 89999999999999988776 66666679999
Q ss_pred EEEcCCCCEEeE
Q psy3712 94 VYTFIQCPQQLH 105 (109)
Q Consensus 94 vy~~~~~~~ll~ 105 (109)
||++...-+++.
T Consensus 221 VWDl~~G~qll~ 232 (487)
T KOG0310|consen 221 VWDLTTGGQLLT 232 (487)
T ss_pred EEEecCCceehh
Confidence 999984445443
No 51
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.58 E-value=4 Score=33.36 Aligned_cols=47 Identities=15% Similarity=0.295 Sum_probs=39.9
Q ss_pred ceEEEEeCCCCc-----EEEEEEccCceeEEEecC-------CEEEEEeCCeEEEEEcC
Q psy3712 52 NRVMIWDDLKKQ-----VVICLEFNAPVKGVRLRR-------DKIVVVLEGLIKVYTFI 98 (109)
Q Consensus 52 n~v~IwDd~~~~-----~i~el~f~s~V~~V~l~r-------~~lvVvl~~~i~vy~~~ 98 (109)
-.++||+...+. ...|.++..||+.|...+ ..|+|...+++-||++.
T Consensus 47 G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~ 105 (418)
T PF14727_consen 47 GILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVS 105 (418)
T ss_pred cEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEE
Confidence 469999987654 678999999999999876 58888888999999983
No 52
>KOG0281|consensus
Probab=90.55 E-value=0.44 Score=38.60 Aligned_cols=86 Identities=20% Similarity=0.363 Sum_probs=62.9
Q ss_pred ceEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCc-eeEEEecCC
Q psy3712 4 GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAP-VKGVRLRRD 82 (109)
Q Consensus 4 Gf~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~-V~~V~l~r~ 82 (109)
-.++++++.+... |......=|++..-||-.++ |+|. |.|.+.+||...|+-..-++=.++ |+-||++.+
T Consensus 341 TikvW~~st~efv--Rtl~gHkRGIAClQYr~rlv--VSGS-----SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k 411 (499)
T KOG0281|consen 341 TIKVWSTSTCEFV--RTLNGHKRGIACLQYRDRLV--VSGS-----SDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK 411 (499)
T ss_pred eEEEEeccceeee--hhhhcccccceehhccCeEE--EecC-----CCceEEEEeccccHHHHHHhchHHhhhheeecCc
Confidence 4577877777553 23333455666677777765 4443 679999999999987766665544 899999999
Q ss_pred EEEE-EeCCeEEEEEcC
Q psy3712 83 KIVV-VLEGLIKVYTFI 98 (109)
Q Consensus 83 ~lvV-vl~~~i~vy~~~ 98 (109)
+||- +-+.+|.||+|.
T Consensus 412 rIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 412 RIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred eeeeccccceEEEEecc
Confidence 9886 567899999997
No 53
>KOG3881|consensus
Probab=90.44 E-value=2 Score=34.94 Aligned_cols=94 Identities=12% Similarity=0.280 Sum_probs=68.8
Q ss_pred eEEEeecCCce-eeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEE--EEccCceeEEEecC
Q psy3712 5 FRIYNCDPLKE-KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVIC--LEFNAPVKGVRLRR 81 (109)
Q Consensus 5 f~Iy~~~P~~~-~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~e--l~f~s~V~~V~l~r 81 (109)
.|+|++.+-+. ...-++...+++.+...++.|+| ++|.- .-.+-.+|.++++.... =-+..+|++|....
T Consensus 228 vR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~I-y~gn~------~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp 300 (412)
T KOG3881|consen 228 VRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFI-YTGNT------KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP 300 (412)
T ss_pred EEEecCcccCcceeEeccccCcceeeeecCCCcEE-EEecc------cchhheecccCceeeccccCCccCCcceEEEcC
Confidence 57887765433 12224567899999999999996 77752 34588999999987764 35678999999999
Q ss_pred C--EEE-EEeCCeEEEEEcCCCCEEeEE
Q psy3712 82 D--KIV-VVLEGLIKVYTFIQCPQQLHI 106 (109)
Q Consensus 82 ~--~lv-Vvl~~~i~vy~~~~~~~ll~~ 106 (109)
. .++ +-|+.-++||+.. +-++||.
T Consensus 301 ~~~~las~GLDRyvRIhD~k-trkll~k 327 (412)
T KOG3881|consen 301 THPVLASCGLDRYVRIHDIK-TRKLLHK 327 (412)
T ss_pred CCceEEeeccceeEEEeecc-cchhhhh
Confidence 8 332 3477899999998 4566653
No 54
>KOG0294|consensus
Probab=90.28 E-value=5.7 Score=31.73 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=59.5
Q ss_pred eEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEec--CC
Q psy3712 5 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLR--RD 82 (109)
Q Consensus 5 f~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~--r~ 82 (109)
..||+..|+.+.-+..-+.|.|.-+.. +-|+-+||.=||. ..+..||-.+++.-.-+.....-..|+.+ .+
T Consensus 109 i~iw~~~~W~~~~slK~H~~~Vt~lsi-HPS~KLALsVg~D------~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd 181 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAHKGQVTDLSI-HPSGKLALSVGGD------QVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD 181 (362)
T ss_pred EEEEEcCCeEEeeeecccccccceeEe-cCCCceEEEEcCC------ceeeeehhhcCccceeeccCCcceeeEEcCCCC
Confidence 467888888554332223444544444 4567777754443 57999999998876666555544445554 57
Q ss_pred EEEEEeCCeEEEEEcCC
Q psy3712 83 KIVVVLEGLIKVYTFIQ 99 (109)
Q Consensus 83 ~lvVvl~~~i~vy~~~~ 99 (109)
+++|...++|-||.+.+
T Consensus 182 ~F~v~~~~~i~i~q~d~ 198 (362)
T KOG0294|consen 182 HFVVSGRNKIDIYQLDN 198 (362)
T ss_pred EEEEEeccEEEEEeccc
Confidence 89999999999999874
No 55
>KOG0300|consensus
Probab=90.27 E-value=1.3 Score=35.66 Aligned_cols=50 Identities=10% Similarity=0.345 Sum_probs=41.3
Q ss_pred CCceEEEEeCCCC-cEEEEEEccCceeEEEecCCEEEEEeC---CeEEEEEcCC
Q psy3712 50 PNNRVMIWDDLKK-QVVICLEFNAPVKGVRLRRDKIVVVLE---GLIKVYTFIQ 99 (109)
Q Consensus 50 ~~n~v~IwDd~~~-~~i~el~f~s~V~~V~l~r~~lvVvl~---~~i~vy~~~~ 99 (109)
..+.|+|||-++. .+++.|...|++-.|-+++..=+|++. ..|++|+++.
T Consensus 376 DDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred CCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCC
Confidence 4688999999975 578999999999888888887555554 5899999984
No 56
>KOG0273|consensus
Probab=89.75 E-value=5.8 Score=33.13 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=55.2
Q ss_pred cCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCce-eEEEecCCEEEEE--eCCeEEEEEc
Q psy3712 21 FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPV-KGVRLRRDKIVVV--LEGLIKVYTF 97 (109)
Q Consensus 21 ~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V-~~V~l~r~~lvVv--l~~~i~vy~~ 97 (109)
.+.|||--+.-=.+-++|+--| ..+..++||..++...-..+|.+.. ++|-..-+-=++. .+..|+||.+
T Consensus 274 ~HkgPI~slKWnk~G~yilS~~-------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv 346 (524)
T KOG0273|consen 274 QHKGPIFSLKWNKKGTYILSGG-------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKV 346 (524)
T ss_pred ccCCceEEEEEcCCCCEEEecc-------CCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEe
Confidence 3578999999888889885443 3478899999999999999999987 8777655443333 3357999999
Q ss_pred C
Q psy3712 98 I 98 (109)
Q Consensus 98 ~ 98 (109)
.
T Consensus 347 ~ 347 (524)
T KOG0273|consen 347 G 347 (524)
T ss_pred c
Confidence 8
No 57
>KOG0303|consensus
Probab=89.60 E-value=1.8 Score=35.52 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=41.2
Q ss_pred CCceEEEEeCCCCcEEEEEEccCceeEEEecCCE--EEEEe-CCeEEEEEcC
Q psy3712 50 PNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDK--IVVVL-EGLIKVYTFI 98 (109)
Q Consensus 50 ~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~--lvVvl-~~~i~vy~~~ 98 (109)
+.|.|.|||..+++...++.-|.-|.++.+++|- ++-.- +.+|+|++-.
T Consensus 152 ~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr 203 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR 203 (472)
T ss_pred CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCC
Confidence 4689999999999999999999999999999984 33333 4689999876
No 58
>KOG0278|consensus
Probab=89.41 E-value=4.5 Score=31.59 Aligned_cols=88 Identities=15% Similarity=0.248 Sum_probs=68.4
Q ss_pred CcceEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecC
Q psy3712 2 EDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRR 81 (109)
Q Consensus 2 ~~Gf~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r 81 (109)
+.+.|.+++-...+..+-++ +.++.-+|.-.+-.|+.+--|+ .|..||.+.-..+.+.+.|..|.+--|..
T Consensus 164 d~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gs--------sV~Fwdaksf~~lKs~k~P~nV~SASL~P 234 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGS--------SVKFWDAKSFGLLKSYKMPCNVESASLHP 234 (334)
T ss_pred CCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCc--------eeEEeccccccceeeccCccccccccccC
Confidence 35678888888877766554 7789999999999998777654 48999999999999999999999999987
Q ss_pred CE-EEEEeCCe--EEEEEcC
Q psy3712 82 DK-IVVVLEGL--IKVYTFI 98 (109)
Q Consensus 82 ~~-lvVvl~~~--i~vy~~~ 98 (109)
+. +.|+=.+. +|.|++.
T Consensus 235 ~k~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred CCceEEecCcceEEEEEecc
Confidence 75 44444454 4455554
No 59
>KOG0263|consensus
Probab=89.36 E-value=2.3 Score=36.93 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=57.6
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEc-cCceeEEEecCCEEEEEeC---CeEEEEEcC
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF-NAPVKGVRLRRDKIVVVLE---GLIKVYTFI 98 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f-~s~V~~V~l~r~~lvVvl~---~~i~vy~~~ 98 (109)
.+.+.++.-=.++|++|- | + +.+.|++||..++..+.-++= .+||.+++++..---.+.. ..|.+|++.
T Consensus 535 lsDV~cv~FHPNs~Y~aT-G-S-----sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVAT-G-S-----SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccccceEEECCccccccc-C-C-----CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 568899999999999864 2 2 678999999999987765432 5689999999886666655 578999998
Q ss_pred CCCEEeE
Q psy3712 99 QCPQQLH 105 (109)
Q Consensus 99 ~~~~ll~ 105 (109)
. =+++.
T Consensus 608 ~-~~~v~ 613 (707)
T KOG0263|consen 608 N-GSLVK 613 (707)
T ss_pred C-Ccchh
Confidence 4 34443
No 60
>KOG1272|consensus
Probab=89.24 E-value=0.76 Score=38.23 Aligned_cols=67 Identities=15% Similarity=0.284 Sum_probs=54.7
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCCE-EEEEeCCeEEEEE
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDK-IVVVLEGLIKVYT 96 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~-lvVvl~~~i~vy~ 96 (109)
.|+++-++.=-.-+++|-.|. .++++|||.+.-.....+.-|.+..++-++..- |++...+.+.||.
T Consensus 293 ~g~V~siAv~~~G~YMaTtG~-------Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 293 RGPVSSIAVDRGGRYMATTGL-------DRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred CCCcceEEECCCCcEEeeccc-------ccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeeh
Confidence 688999998888999988874 589999999987777777778899999998664 5555668888884
No 61
>KOG1273|consensus
Probab=89.14 E-value=2 Score=34.39 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=40.5
Q ss_pred CCCceEEEEeCCCCcEEEEEEccCceeEEEecC--CE--EEEEeCCeEEEEEcCC
Q psy3712 49 YPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRR--DK--IVVVLEGLIKVYTFIQ 99 (109)
Q Consensus 49 ~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r--~~--lvVvl~~~i~vy~~~~ 99 (109)
...+++..||..++....++.|+|||.+..+.. ++ ++-.++..-.+-+|++
T Consensus 84 S~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 84 SRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred cCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 356889999999999999999999999998853 22 3334457788888884
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=89.10 E-value=14 Score=31.89 Aligned_cols=86 Identities=14% Similarity=0.206 Sum_probs=48.5
Q ss_pred eEEEeecCCceeeeeecCCCCEEEEEEcC-CccEEEEEcCCCCCCCCCceEEEEeCCCCc-EEEEEE-ccCceeEEEecC
Q psy3712 5 FRIYNCDPLKEKERQDFTDGGLGHVEMLF-RCNYLALVGGGTHPKYPNNRVMIWDDLKKQ-VVICLE-FNAPVKGVRLRR 81 (109)
Q Consensus 5 f~Iy~~~P~~~~~~~~~~~g~v~~veml~-~tn~ialVg~g~~p~~~~n~v~IwDd~~~~-~i~el~-f~s~V~~V~l~r 81 (109)
.++|++.......... ..+.+..+.... ..+++| +|+ ..+.+.+||.++.+ .+..+. ...+|..+.+..
T Consensus 600 v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~g~~la-tgs------~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~ 671 (793)
T PLN00181 600 VKLWSINQGVSIGTIK-TKANICCVQFPSESGRSLA-FGS------ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD 671 (793)
T ss_pred EEEEECCCCcEEEEEe-cCCCeEEEEEeCCCCCEEE-EEe------CCCeEEEEECCCCCccceEecCCCCCEEEEEEeC
Confidence 5666665443332221 123333333322 344554 343 34689999998765 343333 456899998865
Q ss_pred CE-EEEE-eCCeEEEEEcC
Q psy3712 82 DK-IVVV-LEGLIKVYTFI 98 (109)
Q Consensus 82 ~~-lvVv-l~~~i~vy~~~ 98 (109)
.. ++.. .++.|.+|++.
T Consensus 672 ~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 672 SSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred CCEEEEEECCCEEEEEeCC
Confidence 44 3333 35789999986
No 63
>KOG2110|consensus
Probab=87.92 E-value=13 Score=30.15 Aligned_cols=99 Identities=18% Similarity=0.303 Sum_probs=70.4
Q ss_pred cceEEEeecCCceeeee-ecCCCCEEEEEEcCCcc--EEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEcc-CceeEEE
Q psy3712 3 DGFRIYNCDPLKEKERQ-DFTDGGLGHVEMLFRCN--YLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN-APVKGVR 78 (109)
Q Consensus 3 ~Gf~Iy~~~P~~~~~~~-~~~~g~v~~veml~~tn--~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~-s~V~~V~ 78 (109)
+-.-||+...++..-.- +.+..+-|++.+=.+.+ ++|+-|.- .+-.|+|||..+=+.+..|... +++-++.
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-----t~GdV~l~d~~nl~~v~~I~aH~~~lAala 180 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-----TSGDVVLFDTINLQPVNTINAHKGPLAALA 180 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC-----CCceEEEEEcccceeeeEEEecCCceeEEE
Confidence 44668888877665332 22346777777776665 99997643 4567999999999999999875 4788888
Q ss_pred ecCCEEEEEeC----CeEEEEEcCCCCEEeEEe
Q psy3712 79 LRRDKIVVVLE----GLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 79 l~r~~lvVvl~----~~i~vy~~~~~~~ll~~~ 107 (109)
++.+=-.+++. .-|+||..++ =.++++|
T Consensus 181 fs~~G~llATASeKGTVIRVf~v~~-G~kl~eF 212 (391)
T KOG2110|consen 181 FSPDGTLLATASEKGTVIRVFSVPE-GQKLYEF 212 (391)
T ss_pred ECCCCCEEEEeccCceEEEEEEcCC-ccEeeee
Confidence 88775555554 4689999985 4666654
No 64
>KOG0318|consensus
Probab=87.73 E-value=7.3 Score=33.02 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=60.1
Q ss_pred CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCcee----EEEecCCEEEE-EeCCeEEEEE
Q psy3712 22 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVK----GVRLRRDKIVV-VLEGLIKVYT 96 (109)
Q Consensus 22 ~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~----~V~l~r~~lvV-vl~~~i~vy~ 96 (109)
+.|++--+.-..++.-+|-++++ ...+|||..+++.+.++.+.+.|. ++-..+++|+. .|...|-.++
T Consensus 234 HkGsIfalsWsPDs~~~~T~SaD-------kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln 306 (603)
T KOG0318|consen 234 HKGSIFALSWSPDSTQFLTVSAD-------KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLN 306 (603)
T ss_pred ccccEEEEEECCCCceEEEecCC-------ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEec
Confidence 46888888888888888888865 568999999999999999999854 45556777765 4668899998
Q ss_pred cCCCCEEeEE
Q psy3712 97 FIQCPQQLHI 106 (109)
Q Consensus 97 ~~~~~~ll~~ 106 (109)
..+ |.-+++
T Consensus 307 ~~d-~~~~~~ 315 (603)
T KOG0318|consen 307 PSD-PSVLKV 315 (603)
T ss_pred ccC-CChhhe
Confidence 884 554443
No 65
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=86.76 E-value=12 Score=29.78 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=48.1
Q ss_pred CccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCce-eEEEecC--CEEEEEe-CCeEEEEEcCCCCEEeEEe
Q psy3712 34 RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPV-KGVRLRR--DKIVVVL-EGLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 34 ~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V-~~V~l~r--~~lvVvl-~~~i~vy~~~~~~~ll~~~ 107 (109)
..|+++++-.+ .+.|.|.|..+++.+.++....++ ..+..++ .++.|+- +..|.++++. +.+.+.++
T Consensus 4 ~~~l~~V~~~~------~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~-~~~~v~~i 74 (369)
T PF02239_consen 4 TGNLFYVVERG------SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLA-TGKVVATI 74 (369)
T ss_dssp GGGEEEEEEGG------GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETT-SSSEEEEE
T ss_pred CccEEEEEecC------CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECC-cccEEEEE
Confidence 35677666544 378999999999999999987765 4466776 5577766 4699999998 57777764
No 66
>KOG1539|consensus
Probab=86.47 E-value=19 Score=32.09 Aligned_cols=73 Identities=21% Similarity=0.418 Sum_probs=52.0
Q ss_pred EEEEcCCccEE--EEEcCCCCCCCCCceEEEEeCCCCcEEEEEE-ccCceeEEEecCCEEEEEe--C-CeEEEEEcCCCC
Q psy3712 28 HVEMLFRCNYL--ALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL--E-GLIKVYTFIQCP 101 (109)
Q Consensus 28 ~veml~~tn~i--alVg~g~~p~~~~n~v~IwDd~~~~~i~el~-f~s~V~~V~l~r~~lvVvl--~-~~i~vy~~~~~~ 101 (109)
+..+++=+-++ .+||. ++-.++|||.++++.+.++. |.+.|.++.=+.-.=||+. + .+|.+||+.. =
T Consensus 162 Ital~HP~TYLNKIvvGs------~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~-d 234 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGS------SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF-D 234 (910)
T ss_pred eeeEecchhheeeEEEee------cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc-C
Confidence 66777666555 45553 44569999999999999874 6677888777765545544 3 7999999984 3
Q ss_pred EEeEEe
Q psy3712 102 QQLHIY 107 (109)
Q Consensus 102 ~ll~~~ 107 (109)
+.|.+|
T Consensus 235 kil~sF 240 (910)
T KOG1539|consen 235 KILMSF 240 (910)
T ss_pred cEEEEE
Confidence 656554
No 67
>KOG0268|consensus
Probab=84.42 E-value=2.3 Score=34.48 Aligned_cols=55 Identities=20% Similarity=0.405 Sum_probs=46.1
Q ss_pred ceEEEEeCCCCcEEEEEEccC-ceeEEEecCCEEEEEeCC-eEEEEEcCCCCEEeEEec
Q psy3712 52 NRVMIWDDLKKQVVICLEFNA-PVKGVRLRRDKIVVVLEG-LIKVYTFIQCPQQLHIYL 108 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f~s-~V~~V~l~r~~lvVvl~~-~i~vy~~~~~~~ll~~~~ 108 (109)
-.|+|||-.+...+..++... .|.++...++.++=|-++ .|..|.+.. | .+|+||
T Consensus 89 G~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~-p~~til 145 (433)
T KOG0268|consen 89 GEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-P-PLHTIL 145 (433)
T ss_pred ceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-C-cceeee
Confidence 469999999999999999887 999999999888877775 588888874 3 677776
No 68
>KOG0294|consensus
Probab=84.05 E-value=14 Score=29.65 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=54.8
Q ss_pred CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccC-ceeEEEecCCE----EEE-EeCCeEEEE
Q psy3712 22 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA-PVKGVRLRRDK----IVV-VLEGLIKVY 95 (109)
Q Consensus 22 ~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s-~V~~V~l~r~~----lvV-vl~~~i~vy 95 (109)
+.|++..+..-. .+++.|| +...+.|||-++++..+.+.-++ .|.+.++...+ |+- .-+..|-+|
T Consensus 42 H~~sitavAVs~----~~~aSGs-----sDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 42 HAGSITALAVSG----PYVASGS-----SDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccceeEEEecc----eeEeccC-----CCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 466777665433 4456666 45789999999998888666554 68888876654 444 445799999
Q ss_pred EcCCCCEEeEEe
Q psy3712 96 TFIQCPQQLHIY 107 (109)
Q Consensus 96 ~~~~~~~ll~~~ 107 (109)
+.. ++++++++
T Consensus 113 ~~~-~W~~~~sl 123 (362)
T KOG0294|consen 113 RVG-SWELLKSL 123 (362)
T ss_pred EcC-CeEEeeee
Confidence 998 68988875
No 69
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=83.91 E-value=2.3 Score=35.79 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=45.9
Q ss_pred CCCCCCceEEEEeCCCCcEEEEEEccC------ceeEEEecCCEEEEEeCCeEEEEEcCCCCE
Q psy3712 46 HPKYPNNRVMIWDDLKKQVVICLEFNA------PVKGVRLRRDKIVVVLEGLIKVYTFIQCPQ 102 (109)
Q Consensus 46 ~p~~~~n~v~IwDd~~~~~i~el~f~s------~V~~V~l~r~~lvVvl~~~i~vy~~~~~~~ 102 (109)
.|..+.|++.+||...+..+......+ |++.-..+....+=+..++++||++.+++.
T Consensus 102 sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~ 164 (561)
T COG5354 102 SPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIE 164 (561)
T ss_pred CCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccc
Confidence 366777899999999999998766644 477777788888888899999999765554
No 70
>KOG1274|consensus
Probab=83.78 E-value=21 Score=32.06 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=65.5
Q ss_pred ceEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEE-------EEEc--cCce
Q psy3712 4 GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVI-------CLEF--NAPV 74 (109)
Q Consensus 4 Gf~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~-------el~f--~s~V 74 (109)
+.++-+.+.......-.-.++++..+..-..-|++|.+... -+|.|||...+.... ..+| .+.+
T Consensus 119 ~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~d-------G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~ 191 (933)
T KOG1274|consen 119 AVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCD-------GKVQIWDLQDGILSKTLTGVDKDNEFILSRIC 191 (933)
T ss_pred eEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecC-------ceEEEEEcccchhhhhcccCCcccccccccee
Confidence 34444554443322212247899999999999999998743 479999988775432 2233 3455
Q ss_pred eEEEecCC---EEEEEeCCeEEEEEcCCCCEEeEEe
Q psy3712 75 KGVRLRRD---KIVVVLEGLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 75 ~~V~l~r~---~lvVvl~~~i~vy~~~~~~~ll~~~ 107 (109)
..+...++ .+++..++.|.+|+-. ++.++..+
T Consensus 192 ~~~aW~Pk~g~la~~~~d~~Vkvy~r~-~we~~f~L 226 (933)
T KOG1274|consen 192 TRLAWHPKGGTLAVPPVDNTVKVYSRK-GWELQFKL 226 (933)
T ss_pred eeeeecCCCCeEEeeccCCeEEEEccC-Cceeheee
Confidence 66667665 8999999999999988 57766554
No 71
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=83.42 E-value=18 Score=28.87 Aligned_cols=68 Identities=12% Similarity=-0.073 Sum_probs=50.8
Q ss_pred EEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeC-----------CeEEEEEcCCCCEE
Q psy3712 37 YLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLE-----------GLIKVYTFIQCPQQ 103 (109)
Q Consensus 37 ~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~-----------~~i~vy~~~~~~~l 103 (109)
--++|-........ +.+.+.|..+++.+..+.-...=..+ +++| .+.|+.. +.|.||+.. +.+.
T Consensus 13 ~~v~V~d~~~~~~~-~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~-t~~~ 89 (352)
T TIGR02658 13 RRVYVLDPGHFAAT-TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ-THLP 89 (352)
T ss_pred CEEEEECCcccccC-ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc-cCcE
Confidence 34677655444435 89999999999999999876544454 7776 7777776 899999998 6777
Q ss_pred eEEe
Q psy3712 104 LHIY 107 (109)
Q Consensus 104 l~~~ 107 (109)
++++
T Consensus 90 ~~~i 93 (352)
T TIGR02658 90 IADI 93 (352)
T ss_pred EeEE
Confidence 7654
No 72
>KOG0272|consensus
Probab=82.86 E-value=7.2 Score=32.14 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=66.9
Q ss_pred ceEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEcc-CceeEEEecCC
Q psy3712 4 GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN-APVKGVRLRRD 82 (109)
Q Consensus 4 Gf~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~-s~V~~V~l~r~ 82 (109)
-+|+|+.+.-.+....+=+..+|.-+.--++-+++| .||-. +-=+|||.++++-|+-+.=. .+|.+|-.+.+
T Consensus 284 tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~-tGGlD------~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN 356 (459)
T KOG0272|consen 284 TWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAA-TGGLD------SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN 356 (459)
T ss_pred chhhcccccchhhHhhcccccccceeEecCCCceee-ccCcc------chhheeecccCcEEEEecccccceeeEeECCC
Confidence 356777777666554432344666666666666653 33322 34589999999998877654 48999999999
Q ss_pred EEEEEeC---CeEEEEEcCCCCEEeEEe
Q psy3712 83 KIVVVLE---GLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 83 ~lvVvl~---~~i~vy~~~~~~~ll~~~ 107 (109)
=--+++. +.+.||++.. -+.++++
T Consensus 357 Gy~lATgs~Dnt~kVWDLR~-r~~ly~i 383 (459)
T KOG0272|consen 357 GYHLATGSSDNTCKVWDLRM-RSELYTI 383 (459)
T ss_pred ceEEeecCCCCcEEEeeecc-cccceec
Confidence 8887774 7899999983 4556665
No 73
>KOG0265|consensus
Probab=82.15 E-value=16 Score=28.96 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=43.4
Q ss_pred CCceEEEEeCCCCcEEEEEEccCceeEEEecCC---EEEEEeCCeEEEEEcCCCCEEeEE
Q psy3712 50 PNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD---KIVVVLEGLIKVYTFIQCPQQLHI 106 (109)
Q Consensus 50 ~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~---~lvVvl~~~i~vy~~~~~~~ll~~ 106 (109)
+...+++||-+++..+..++-+.++.+|-.+.+ -+.--.++.|.+|++.++ +.+|+
T Consensus 153 dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~-d~~~~ 211 (338)
T KOG0265|consen 153 DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN-DGLYT 211 (338)
T ss_pred CCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccC-cceEE
Confidence 567899999999999988888899999988764 344445689999999642 44443
No 74
>KOG2055|consensus
Probab=81.65 E-value=9.8 Score=31.76 Aligned_cols=75 Identities=16% Similarity=0.363 Sum_probs=57.5
Q ss_pred CEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEE-eCCeEEEEEcCCCC
Q psy3712 25 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVV-LEGLIKVYTFIQCP 101 (109)
Q Consensus 25 ~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVv-l~~~i~vy~~~~~~ 101 (109)
++..-|.-+.+|+||+.|.. --+.+.-.++++.+..++-+..|.++.++-+ +|+++ -...|+||++.+ +
T Consensus 305 ~~e~FeVShd~~fia~~G~~-------G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~-~ 376 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNN-------GHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ-N 376 (514)
T ss_pred hhheeEecCCCCeEEEcccC-------ceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCC-c
Confidence 55566667999999999953 3478888999999999999999999888643 33333 358999999995 5
Q ss_pred EEeEEe
Q psy3712 102 QQLHIY 107 (109)
Q Consensus 102 ~ll~~~ 107 (109)
+-+|.+
T Consensus 377 ~~~~rf 382 (514)
T KOG2055|consen 377 SCLHRF 382 (514)
T ss_pred ceEEEE
Confidence 767765
No 75
>KOG0315|consensus
Probab=81.41 E-value=7.5 Score=30.32 Aligned_cols=65 Identities=12% Similarity=0.342 Sum_probs=48.8
Q ss_pred EEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccC-ceeEEEecC--CEEEEEeCCeEEEEEcC-CCCEEeEEe
Q psy3712 38 LALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA-PVKGVRLRR--DKIVVVLEGLIKVYTFI-QCPQQLHIY 107 (109)
Q Consensus 38 ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s-~V~~V~l~r--~~lvVvl~~~i~vy~~~-~~~~ll~~~ 107 (109)
+.||..|- ...+++|-..+|+-+..+..+. .|-++.++. ..|+++--..|++|+++ ++|..+.+|
T Consensus 11 viLvsA~Y-----DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~ 79 (311)
T KOG0315|consen 11 VILVSAGY-----DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATF 79 (311)
T ss_pred eEEEeccC-----cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEE
Confidence 34565552 3678999999999999999976 476777665 56888888999999998 345455554
No 76
>KOG0276|consensus
Probab=81.10 E-value=5.6 Score=34.51 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=55.6
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEE-ccCceeEEEecCCEEEEEeC---CeEEEEEcC
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVLE---GLIKVYTFI 98 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~-f~s~V~~V~l~r~~lvVvl~---~~i~vy~~~ 98 (109)
..|+..|.-+.+-.-=.++.|+ ..+.++|||-++++-+..|+ -...|-.+....+.=+++.. ..++||+-.
T Consensus 183 ekGVN~Vdyy~~gdkpylIsga-----DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 183 EKGVNCVDYYTGGDKPYLISGA-----DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred ccCcceEEeccCCCcceEEecC-----CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCc
Confidence 4566666555444333333333 56889999999999998888 56789999999998777764 578998876
Q ss_pred CCCEEeEEe
Q psy3712 99 QCPQQLHIY 107 (109)
Q Consensus 99 ~~~~ll~~~ 107 (109)
+-++-+++
T Consensus 258 -Ty~lE~tL 265 (794)
T KOG0276|consen 258 -TYKLEKTL 265 (794)
T ss_pred -ceehhhhh
Confidence 45554443
No 77
>KOG0305|consensus
Probab=79.30 E-value=18 Score=30.31 Aligned_cols=65 Identities=20% Similarity=0.318 Sum_probs=49.4
Q ss_pred CccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEc-cCceeEEEec--CCEEEEEeC-CeEEEEEcCCCCEEeEEe
Q psy3712 34 RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF-NAPVKGVRLR--RDKIVVVLE-GLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 34 ~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f-~s~V~~V~l~--r~~lvVvl~-~~i~vy~~~~~~~ll~~~ 107 (109)
..|.+| ||-| ..|.+||..+++.....+| ...|..|+.+ -..|+|-.. ..|.||+.. ..+.+.++
T Consensus 187 s~n~la-Valg-------~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~-~~k~~~~~ 255 (484)
T KOG0305|consen 187 SANVLA-VALG-------QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVK-EQKKTRTL 255 (484)
T ss_pred cCCeEE-EEec-------ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehh-hccccccc
Confidence 445554 4544 5699999999998877777 7889999999 557777776 789999988 45665543
No 78
>KOG1897|consensus
Probab=78.86 E-value=24 Score=32.13 Aligned_cols=100 Identities=13% Similarity=0.188 Sum_probs=69.4
Q ss_pred eEEEeecCCceeeeeecCC----CCEEEEEEcCCccEEEEEcCCCC------CCCCCceEEEEeC-CCCcEEEEEEccCc
Q psy3712 5 FRIYNCDPLKEKERQDFTD----GGLGHVEMLFRCNYLALVGGGTH------PKYPNNRVMIWDD-LKKQVVICLEFNAP 73 (109)
Q Consensus 5 f~Iy~~~P~~~~~~~~~~~----g~v~~veml~~tn~ialVg~g~~------p~~~~n~v~IwDd-~~~~~i~el~f~s~ 73 (109)
++||+=+.|+.....++.. -++--+..-.+.|-..+||.|.. |+--.=.|.-+++ ++=+.++|..-...
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 5777777777766655532 23444456667688889997742 2211111334455 44567899999999
Q ss_pred eeEEEecCCEEEEEeCCeEEEEEcCCCCEEeE
Q psy3712 74 VKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLH 105 (109)
Q Consensus 74 V~~V~l~r~~lvVvl~~~i~vy~~~~~~~ll~ 105 (109)
+.++..=.+++++....+|.+|+... =|.|+
T Consensus 832 v~aL~~fngkllA~In~~vrLye~t~-~~eLr 862 (1096)
T KOG1897|consen 832 VYALVEFNGKLLAGINQSVRLYEWTT-ERELR 862 (1096)
T ss_pred eeehhhhCCeEEEecCcEEEEEEccc-cceeh
Confidence 99999999999999999999999984 34443
No 79
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=78.77 E-value=15 Score=31.76 Aligned_cols=57 Identities=18% Similarity=0.355 Sum_probs=41.2
Q ss_pred CccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEc--cCceeEEEec-----CCEEEEEeCCeEEEEE
Q psy3712 34 RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF--NAPVKGVRLR-----RDKIVVVLEGLIKVYT 96 (109)
Q Consensus 34 ~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f--~s~V~~V~l~-----r~~lvVvl~~~i~vy~ 96 (109)
.++-+|+|.. +...+.|||.+.+..-.|-+| ..+|.++-.. ..-+.|-..++|.+|.
T Consensus 39 s~~k~a~V~~------~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 39 SIKKIAVVDS------SRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred ccCcEEEEEC------CCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3788999954 357899999999988888888 5566665543 3356666677777764
No 80
>KOG0282|consensus
Probab=78.56 E-value=8.7 Score=32.09 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=56.1
Q ss_pred EEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEc-cCceeEEEe---cC
Q psy3712 6 RIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF-NAPVKGVRL---RR 81 (109)
Q Consensus 6 ~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f-~s~V~~V~l---~r 81 (109)
+.++++..++..+-. .+.-...++.-..-+=+.|||+ +..+++-||.+.++.+-|+.= -.+|++|.+ +|
T Consensus 283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~------sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGG------SDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR 355 (503)
T ss_pred eeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEec------CCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc
Confidence 455666666654422 1344555555544434558887 457899999999987655432 224444444 45
Q ss_pred CEEEEEeCCeEEEEEcCCCCEEeE
Q psy3712 82 DKIVVVLEGLIKVYTFIQCPQQLH 105 (109)
Q Consensus 82 ~~lvVvl~~~i~vy~~~~~~~ll~ 105 (109)
.++--.=+..+.||++. .|-.+.
T Consensus 356 rFissSDdks~riWe~~-~~v~ik 378 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENR-IPVPIK 378 (503)
T ss_pred eEeeeccCccEEEEEcC-CCccch
Confidence 55555556789999988 455443
No 81
>KOG0313|consensus
Probab=78.04 E-value=34 Score=28.00 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=65.3
Q ss_pred eEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCc-EEEEEEccC---ceeEEEec
Q psy3712 5 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ-VVICLEFNA---PVKGVRLR 80 (109)
Q Consensus 5 f~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~-~i~el~f~s---~V~~V~l~ 80 (109)
.++++++.-+++.+. ....++-.++.+..++++|--+ +.+.+++||.+++. -+...+|.+ =|.+++.+
T Consensus 283 Ik~WDletg~~~~~~-~~~ksl~~i~~~~~~~Ll~~gs-------sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws 354 (423)
T KOG0313|consen 283 IKVWDLETGGLKSTL-TTNKSLNCISYSPLSKLLASGS-------SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS 354 (423)
T ss_pred EEEEEeecccceeee-ecCcceeEeecccccceeeecC-------CCCceeecCCCCCCCceeEEeeecchhhhhheecC
Confidence 345555555554432 2356788889999888886533 45778999999764 344666644 48888888
Q ss_pred CC----EEEEEeCCeEEEEEcCCCCEEeEEec
Q psy3712 81 RD----KIVVVLEGLIKVYTFIQCPQQLHIYL 108 (109)
Q Consensus 81 r~----~lvVvl~~~i~vy~~~~~~~ll~~~~ 108 (109)
+. .+-+..++.+.+|+...+-.-|+.+.
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 76 45677889999999995433666653
No 82
>KOG1524|consensus
Probab=77.98 E-value=2 Score=36.62 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=41.5
Q ss_pred CCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCCEEEEEeCCeEEEEEcC
Q psy3712 47 PKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFI 98 (109)
Q Consensus 47 p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~lvVvl~~~i~vy~~~ 98 (109)
...+...+.+=|..++.. --++||+.|...-++-.+|+|++...||+|+-.
T Consensus 298 t~~~r~~I~vrdV~~~v~-d~LE~p~rv~k~sL~Y~hLvvaTs~qvyiys~k 348 (737)
T KOG1524|consen 298 TSKSRKSITVRDVATGVQ-DILEFPQRVVKFSLGYGHLVVATSLQVYIYSEK 348 (737)
T ss_pred EeeccceEEeehhhhhHH-HHhhCccceeeeeeceeEEEEEeccEEEEEecC
Confidence 344555566666666554 778999999999999999999999999999876
No 83
>KOG0301|consensus
Probab=76.31 E-value=38 Score=29.70 Aligned_cols=67 Identities=21% Similarity=0.335 Sum_probs=47.6
Q ss_pred CEEEEEEcCCccEEEE----------EcCCCCCCCCCceEEEEeCCCCcEEEEEEccC-ceeEEEe--cCCEEEEEeCCe
Q psy3712 25 GLGHVEMLFRCNYLAL----------VGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA-PVKGVRL--RRDKIVVVLEGL 91 (109)
Q Consensus 25 ~v~~veml~~tn~ial----------Vg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s-~V~~V~l--~r~~lvVvl~~~ 91 (109)
|=.+-||-+.+|++-- |..|+ .++++||+.. .....|+.|+ +|=+++. +.|-++-.-+..
T Consensus 209 ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE-----DrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~ 281 (745)
T KOG0301|consen 209 GEVLLEMHGHTNFVYSISMALSDGLIVSTGE-----DRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGR 281 (745)
T ss_pred CceeeeeeccceEEEEEEecCCCCeEEEecC-----CceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCce
Confidence 3345566677776633 33443 4789999988 7788999998 7776654 556666667799
Q ss_pred EEEEEcC
Q psy3712 92 IKVYTFI 98 (109)
Q Consensus 92 i~vy~~~ 98 (109)
|+||+-.
T Consensus 282 VrVfT~~ 288 (745)
T KOG0301|consen 282 VRVFTVD 288 (745)
T ss_pred EEEEEec
Confidence 9999876
No 84
>KOG0650|consensus
Probab=76.07 E-value=21 Score=30.92 Aligned_cols=66 Identities=17% Similarity=0.306 Sum_probs=48.7
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC----EEEEEeCCeEEEE
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD----KIVVVLEGLIKVY 95 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~----~lvVvl~~~i~vy 95 (109)
.|-+..+..=++-+.+| .|+ ..-.|+||-..+++.+...+|.+.|..|-.++. -|+|+.++.+.|-
T Consensus 400 tg~Vr~iSvdp~G~wla--sGs-----dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 400 TGLVRSISVDPSGEWLA--SGS-----DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred CCeEEEEEecCCcceee--ecC-----CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 45556666666555543 333 345799999999999999999999999999876 5777777775443
No 85
>KOG0306|consensus
Probab=76.06 E-value=9.7 Score=33.66 Aligned_cols=65 Identities=14% Similarity=0.281 Sum_probs=43.9
Q ss_pred CEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCCEEEEEeC---CeEEEEEcC
Q psy3712 25 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLE---GLIKVYTFI 98 (109)
Q Consensus 25 ~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~lvVvl~---~~i~vy~~~ 98 (109)
.|.-++.- ..|++.+.|+| +.++|||.++.+.+..+++. -+++.++-..---|++. .++.||++.
T Consensus 375 dVRsl~vS-~d~~~~~Sga~-------~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 375 DVRSLCVS-SDSILLASGAG-------ESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred heeEEEee-cCceeeeecCC-------CcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEee
Confidence 34433332 34444455544 56999999999999999998 77777776554444443 578899887
No 86
>KOG0646|consensus
Probab=75.86 E-value=12 Score=31.03 Aligned_cols=51 Identities=22% Similarity=0.378 Sum_probs=41.6
Q ss_pred CCceEEEEeCCCCcEEEEEEccCceeEEEecCCEEEEEe---CCeEEEEEcCCC
Q psy3712 50 PNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQC 100 (109)
Q Consensus 50 ~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~lvVvl---~~~i~vy~~~~~ 100 (109)
..+.+++||...+..+..+.||++|.++-|.+---+|-. +.+|++.++.+.
T Consensus 196 ~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 196 EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence 568899999999999999999999999999876444433 367888877643
No 87
>KOG0282|consensus
Probab=75.45 E-value=2.7 Score=34.97 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=42.7
Q ss_pred ceEEEEeCCCCcEEEEEEccCceeEEEecCCE----EEEEeCCeEEEEEcCCCCEEeE
Q psy3712 52 NRVMIWDDLKKQVVICLEFNAPVKGVRLRRDK----IVVVLEGLIKVYTFIQCPQQLH 105 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~----lvVvl~~~i~vy~~~~~~~ll~ 105 (109)
+-+++||.++|+.+..++-...+--|+...+- |+=-.+.+|.-|++. +.+.++
T Consensus 280 ~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR-s~kvvq 336 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR-SGKVVQ 336 (503)
T ss_pred eeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEecc-chHHHH
Confidence 45999999999999999999999999998764 444456899999998 455444
No 88
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=75.35 E-value=33 Score=25.87 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=34.0
Q ss_pred CCceEEEEeCCCCcEEE-------EEEccCceeEEEecCC--EEEEEeC--CeEEEEEcC
Q psy3712 50 PNNRVMIWDDLKKQVVI-------CLEFNAPVKGVRLRRD--KIVVVLE--GLIKVYTFI 98 (109)
Q Consensus 50 ~~n~v~IwDd~~~~~i~-------el~f~s~V~~V~l~r~--~lvVvl~--~~i~vy~~~ 98 (109)
..+.|.+||..+...+. .+.-.+....+.++++ ++.|+-+ ++|.+|++.
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 34789999987643221 1122345577888887 7877764 999999996
No 89
>KOG0271|consensus
Probab=74.46 E-value=19 Score=29.64 Aligned_cols=84 Identities=15% Similarity=0.230 Sum_probs=54.8
Q ss_pred EEeecCCceeeeeec--CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCc-eeEEEecCCE
Q psy3712 7 IYNCDPLKEKERQDF--TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAP-VKGVRLRRDK 83 (109)
Q Consensus 7 Iy~~~P~~~~~~~~~--~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~-V~~V~l~r~~ 83 (109)
||.+.|-..+.. .+ +.+.|-.+..=.....+ ..|+|. +.+++||..++.+.....=... |+.|-.+.|-
T Consensus 98 vfrvrpvtrCss-S~~GH~e~Vl~~~fsp~g~~l-~tGsGD------~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg 169 (480)
T KOG0271|consen 98 VFRVRPVTRCSS-SIAGHGEAVLSVQFSPTGSRL-VTGSGD------TTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG 169 (480)
T ss_pred hhcccccceecc-ccCCCCCcEEEEEecCCCceE-EecCCC------ceEEeeccCCCCcceeecCCccEEEEEEECCCc
Confidence 455556544432 22 23455555555544444 456664 6899999999998876655444 9999999886
Q ss_pred EEEEe---CCeEEEEEcC
Q psy3712 84 IVVVL---EGLIKVYTFI 98 (109)
Q Consensus 84 lvVvl---~~~i~vy~~~ 98 (109)
=.++. +++|.+|+=.
T Consensus 170 k~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 170 KKIASGSKDGSIRLWDPK 187 (480)
T ss_pred chhhccccCCeEEEecCC
Confidence 66654 5899999843
No 90
>KOG2106|consensus
Probab=74.38 E-value=54 Score=27.99 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=53.8
Q ss_pred EEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeC-CeEEEEEcCCCCEE
Q psy3712 27 GHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLE-GLIKVYTFIQCPQQ 103 (109)
Q Consensus 27 ~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~-~~i~vy~~~~~~~l 103 (109)
+.+.=.+-|+ +..+|. ..-...+.|..++..+.+.+..+++..|+.+.+ +++|..+ +.||||..+.+=++
T Consensus 410 ~~~~~fhpsg-~va~Gt------~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 410 AECADFHPSG-VVAVGT------ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred eeEeeccCcc-eEEEee------ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence 3344456677 445553 446789999999999999999999999999876 7777776 79999999965443
No 91
>KOG0269|consensus
Probab=73.91 E-value=30 Score=30.65 Aligned_cols=72 Identities=21% Similarity=0.312 Sum_probs=54.1
Q ss_pred CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCC--CCcEEEEEEccCceeEEEecCCE---EE---EEeCCeEE
Q psy3712 22 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL--KKQVVICLEFNAPVKGVRLRRDK---IV---VVLEGLIK 93 (109)
Q Consensus 22 ~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~--~~~~i~el~f~s~V~~V~l~r~~---lv---Vvl~~~i~ 93 (109)
+.|++..+---..-++||-=|. ..+++|||-. ..+.+..+.--.||-.|+.+.++ |+ -+-+..|+
T Consensus 219 H~GpV~c~nwhPnr~~lATGGR-------DK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~ 291 (839)
T KOG0269|consen 219 HNGPVLCLNWHPNREWLATGGR-------DKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVH 291 (839)
T ss_pred ccCceEEEeecCCCceeeecCC-------CccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEE
Confidence 4788888888887778876442 3689999965 44566778888899999999885 22 34578999
Q ss_pred EEEcCCC
Q psy3712 94 VYTFIQC 100 (109)
Q Consensus 94 vy~~~~~ 100 (109)
||++.-+
T Consensus 292 VWDvrRP 298 (839)
T KOG0269|consen 292 VWDVRRP 298 (839)
T ss_pred EEeeccc
Confidence 9999753
No 92
>KOG1009|consensus
Probab=73.84 E-value=13 Score=30.60 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=41.7
Q ss_pred CceEEEEeCC-CCcEEEEEEccC-ceeEEEec--------------------CCEEEEEeCCeEEEEEcCCCCEEeE
Q psy3712 51 NNRVMIWDDL-KKQVVICLEFNA-PVKGVRLR--------------------RDKIVVVLEGLIKVYTFIQCPQQLH 105 (109)
Q Consensus 51 ~n~v~IwDd~-~~~~i~el~f~s-~V~~V~l~--------------------r~~lvVvl~~~i~vy~~~~~~~ll~ 105 (109)
.|...+++-+ ..++++.+-++. +.++||.. |..++|+.+++++||+-. +++.+.
T Consensus 260 ~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq-~~~P~~ 335 (434)
T KOG1009|consen 260 RNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQ-TLEPLA 335 (434)
T ss_pred eceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccc-cccceE
Confidence 6788888877 677888887765 67777764 457899999999999987 555443
No 93
>KOG0286|consensus
Probab=73.80 E-value=15 Score=29.23 Aligned_cols=48 Identities=15% Similarity=0.380 Sum_probs=40.6
Q ss_pred CceEEEEeCCCCcEEEEEEccCc-eeEEEecCCEEEEE---eCCeEEEEEcC
Q psy3712 51 NNRVMIWDDLKKQVVICLEFNAP-VKGVRLRRDKIVVV---LEGLIKVYTFI 98 (109)
Q Consensus 51 ~n~v~IwDd~~~~~i~el~f~s~-V~~V~l~r~~lvVv---l~~~i~vy~~~ 98 (109)
.-+|+|||..+...+.-|..|+. |...-.++.-=.|+ |+|+..||+++
T Consensus 76 DGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred CCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 46899999999999999999997 88888877655555 67999999998
No 94
>KOG0292|consensus
Probab=73.67 E-value=13 Score=33.62 Aligned_cols=55 Identities=22% Similarity=0.131 Sum_probs=41.6
Q ss_pred CCceEEEEeCCCCcEEEEEEccCceeEEEecCCEEEEEeC--CeEEEEEcCCCCEEeEEe
Q psy3712 50 PNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLE--GLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 50 ~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~lvVvl~--~~i~vy~~~~~~~ll~~~ 107 (109)
+++.|.+||.++++.++++.++ +|+-|..+.|.=-|+|- ..|.|++-. +++++++
T Consensus 469 ~~~~v~lfdvQq~~~~~si~~s-~vkyvvws~dm~~vAll~Kh~i~i~~kk--L~l~~si 525 (1202)
T KOG0292|consen 469 SPDSVTLFDVQQKKKVGSIKVS-KVKYVVWSNDMSRVALLSKHTITIADKK--LELLCSI 525 (1202)
T ss_pred cCCeEEEEEeecceEEEEEecC-ceeEEEEcCccchhhhcccceEEEEecc--hhheecc
Confidence 5688999999999999999884 68888888876656555 556666553 6666653
No 95
>KOG0285|consensus
Probab=73.62 E-value=8.7 Score=31.36 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=51.4
Q ss_pred CCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEE-ccCceeEEEecCC--EEEEEeC-CeEEEEEcCC
Q psy3712 24 GGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRD--KIVVVLE-GLIKVYTFIQ 99 (109)
Q Consensus 24 g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~-f~s~V~~V~l~r~--~lvVvl~-~~i~vy~~~~ 99 (109)
|=|..+..=.. |=.-..|+ ..+...|||..+++-...+. --+.|++|.+++. +++-+.+ ..|.-|++.+
T Consensus 152 gWVr~vavdP~-n~wf~tgs------~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 152 GWVRSVAVDPG-NEWFATGS------ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred ceEEEEeeCCC-ceeEEecC------CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 44444444444 44434454 35789999999999998888 7889999999876 4555554 6788899885
Q ss_pred CCEEeE
Q psy3712 100 CPQQLH 105 (109)
Q Consensus 100 ~~~ll~ 105 (109)
+ +-|+
T Consensus 225 n-kvIR 229 (460)
T KOG0285|consen 225 N-KVIR 229 (460)
T ss_pred h-hhHH
Confidence 3 4443
No 96
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=73.58 E-value=29 Score=26.61 Aligned_cols=43 Identities=7% Similarity=0.019 Sum_probs=37.3
Q ss_pred EEEEEEccCceeEEEecCCEEEEEeCCeEEEEEcCCCCEEeEEe
Q psy3712 64 VVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 64 ~i~el~f~s~V~~V~l~r~~lvVvl~~~i~vy~~~~~~~ll~~~ 107 (109)
...++.|+....++-....++++..++-|.|+++. +.+++.++
T Consensus 236 r~~~l~w~~~p~~~~~~~pyll~~~~~~ievr~l~-~~~l~q~i 278 (302)
T smart00036 236 RNPILHWEFMPESFAYHSPYLLAFHDNGIEIRSIK-TGELLQEL 278 (302)
T ss_pred cceEEEcCCcccEEEEECCEEEEEcCCcEEEEECC-CCceEEEE
Confidence 34589999999999999999999999999999998 46776665
No 97
>KOG2314|consensus
Probab=73.25 E-value=42 Score=28.98 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=54.1
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCC------CCceEEEEeCCCCcEEEEEEccC------ceeEEEecCCEEEEEeCC
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKY------PNNRVMIWDDLKKQVVICLEFNA------PVKGVRLRRDKIVVVLEG 90 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~------~~n~v~IwDd~~~~~i~el~f~s------~V~~V~l~r~~lvVvl~~ 90 (109)
.-++..++.-..-++++--+ ..|-- -+..++|||-.+|.....+..+. |+-.=-...++++-+..+
T Consensus 249 Hp~Vq~idfSP~EkYLVT~s--~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~ 326 (698)
T KOG2314|consen 249 HPGVQFIDFSPNEKYLVTYS--PEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN 326 (698)
T ss_pred CCCceeeecCCccceEEEec--CCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc
Confidence 45677777666666664433 22222 34789999999998777666521 555556667788888999
Q ss_pred eEEEEEcCCCCEEe
Q psy3712 91 LIKVYTFIQCPQQL 104 (109)
Q Consensus 91 ~i~vy~~~~~~~ll 104 (109)
+|.||+-+. +.++
T Consensus 327 sisIyEtps-f~ll 339 (698)
T KOG2314|consen 327 SISIYETPS-FMLL 339 (698)
T ss_pred eEEEEecCc-eeee
Confidence 999999874 5554
No 98
>KOG0319|consensus
Probab=73.11 E-value=42 Score=29.61 Aligned_cols=71 Identities=15% Similarity=0.248 Sum_probs=52.9
Q ss_pred CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEE-ccCceeEEEecCCEEE---EE--eCCeEEEE
Q psy3712 22 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIV---VV--LEGLIKVY 95 (109)
Q Consensus 22 ~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~-f~s~V~~V~l~r~~lv---Vv--l~~~i~vy 95 (109)
+.+|+..++.-...-++| .|| +.+.|.+||-+.+..+..+. +|..|-++.+.++-.- +. .+..+++|
T Consensus 104 He~Pvi~ma~~~~g~LlA-tgg------aD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vw 176 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLA-TGG------ADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVW 176 (775)
T ss_pred cCCCeEEEEEcCCCceEE-ecc------ccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEE
Confidence 468888888877774444 443 56899999999998777665 3888999998877543 32 34789999
Q ss_pred EcCC
Q psy3712 96 TFIQ 99 (109)
Q Consensus 96 ~~~~ 99 (109)
|+.+
T Consensus 177 nl~~ 180 (775)
T KOG0319|consen 177 NLND 180 (775)
T ss_pred Eccc
Confidence 9983
No 99
>KOG1898|consensus
Probab=73.09 E-value=37 Score=31.30 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=43.9
Q ss_pred ceEEEEeCCCCcEE--EEEEc-cCceeEEEecCCEEEEEeC-CeEEEEEcCCCCEEeEEe
Q psy3712 52 NRVMIWDDLKKQVV--ICLEF-NAPVKGVRLRRDKIVVVLE-GLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 52 n~v~IwDd~~~~~i--~el~f-~s~V~~V~l~r~~lvVvl~-~~i~vy~~~~~~~ll~~~ 107 (109)
+.+++||--+++.. +|.++ |..|..++....|++|.-. ++++.|.....-++|+.|
T Consensus 954 ~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~f 1013 (1205)
T KOG1898|consen 954 RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVF 1013 (1205)
T ss_pred cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEE
Confidence 67999998877644 56666 9999999999999999865 788877766444566655
No 100
>KOG0646|consensus
Probab=72.76 E-value=3.7 Score=34.05 Aligned_cols=48 Identities=23% Similarity=0.461 Sum_probs=37.1
Q ss_pred CEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEE-ccCceeEEEe
Q psy3712 25 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRL 79 (109)
Q Consensus 25 ~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~-f~s~V~~V~l 79 (109)
.|...+.-.+-+++ +.| + ..++|+|||....+.+..+. ..+||.+++.
T Consensus 279 ~ITcLais~DgtlL-lSG-d-----~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 279 AITCLAISTDGTLL-LSG-D-----EDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred ceeEEEEecCccEE-Eee-C-----CCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 55566666666655 333 3 35789999999999999998 9999999998
No 101
>KOG0295|consensus
Probab=72.27 E-value=31 Score=28.11 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=43.1
Q ss_pred CceEEEEeCCCCcEEEEEEccCc-eeEEEec--CCEEEEEeC-CeEEEEEcCCCCEEeE
Q psy3712 51 NNRVMIWDDLKKQVVICLEFNAP-VKGVRLR--RDKIVVVLE-GLIKVYTFIQCPQQLH 105 (109)
Q Consensus 51 ~n~v~IwDd~~~~~i~el~f~s~-V~~V~l~--r~~lvVvl~-~~i~vy~~~~~~~ll~ 105 (109)
.+.+++||..++....+|.=..+ |+++-++ .++|+=+.+ ..++||++. +.+-++
T Consensus 313 DktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~-~~~cmk 370 (406)
T KOG0295|consen 313 DKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK-NLQCMK 370 (406)
T ss_pred cceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec-cceeee
Confidence 46799999999999988876554 9999999 777777777 579999998 344444
No 102
>KOG0270|consensus
Probab=72.21 E-value=16 Score=30.31 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=46.9
Q ss_pred EEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEE-ccCceeEEEecCCEEEEEeCC----eEEEEEcC
Q psy3712 27 GHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVLEG----LIKVYTFI 98 (109)
Q Consensus 27 ~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~-f~s~V~~V~l~r~~lvVvl~~----~i~vy~~~ 98 (109)
.+.-+..-+|++|= || +.++|++||..+++....++ +..+|..+.....-=-+.|.. .+.+++..
T Consensus 248 ~Ls~n~~~~nVLaS--gs-----aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 248 ALSWNRNFRNVLAS--GS-----ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred HHHhccccceeEEe--cC-----CCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 34445555666543 33 56899999999999999888 777899999887766665543 57777766
No 103
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=72.00 E-value=48 Score=26.30 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=43.4
Q ss_pred ceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEE--eCCeEEEEEcCCCCEEeEEe
Q psy3712 52 NRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVV--LEGLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVv--l~~~i~vy~~~~~~~ll~~~ 107 (109)
..|.+||..+++.+.++.....-.++-+++| +++|. ..+.+.|++-. +++.++++
T Consensus 58 g~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I 116 (369)
T PF02239_consen 58 GTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTI 116 (369)
T ss_dssp SEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETT-T--EEEEE
T ss_pred CeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccc-cccceeec
Confidence 5799999999999999999999999999875 66666 46999999998 68888764
No 104
>KOG4547|consensus
Probab=71.96 E-value=62 Score=27.56 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=69.9
Q ss_pred eEEEeecCCceeee--eecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccC-ceeEEEecC
Q psy3712 5 FRIYNCDPLKEKER--QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA-PVKGVRLRR 81 (109)
Q Consensus 5 f~Iy~~~P~~~~~~--~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s-~V~~V~l~r 81 (109)
+-+|++.-.+...+ -+-+.|++-.+.|=.+..++-=||+ .-++..|+.+..+.+++-.... .+.++..+.
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~a-------d~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~ 154 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGA-------DLKVVYILEKEKVIIRIWKEQKPLVSSLCISP 154 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCC-------ceeEEEEecccceeeeeeccCCCccceEEEcC
Confidence 44566655444322 2335788888888888888866664 3689999999999999888854 599999999
Q ss_pred C-EEEEEeCCeEEEEEcCCCCEEeEEe
Q psy3712 82 D-KIVVVLEGLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 82 ~-~lvVvl~~~i~vy~~~~~~~ll~~~ 107 (109)
| .+.++--.+|.+|++. +-+.+.+|
T Consensus 155 D~~~l~~as~~ik~~~~~-~kevv~~f 180 (541)
T KOG4547|consen 155 DGKILLTASRQIKVLDIE-TKEVVITF 180 (541)
T ss_pred CCCEEEeccceEEEEEcc-CceEEEEe
Confidence 9 4444557899999998 46766654
No 105
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=71.82 E-value=31 Score=24.25 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=43.8
Q ss_pred CCceEEEEeCCCCcEEEEEEccCceeEE-EecCCEEEEEeC-CeEEEEEcCCCCEEeEE
Q psy3712 50 PNNRVMIWDDLKKQVVICLEFNAPVKGV-RLRRDKIVVVLE-GLIKVYTFIQCPQQLHI 106 (109)
Q Consensus 50 ~~n~v~IwDd~~~~~i~el~f~s~V~~V-~l~r~~lvVvl~-~~i~vy~~~~~~~ll~~ 106 (109)
....|..||..+++.+-+.+++.++... -...++++|+.. ++++.++..+ =+.+.+
T Consensus 44 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~t-G~~~W~ 101 (238)
T PF13360_consen 44 GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKT-GKVLWS 101 (238)
T ss_dssp TTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTT-SCEEEE
T ss_pred CCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCC-cceeee
Confidence 3578999999999999999998876554 788888888875 5788888663 455544
No 106
>KOG0316|consensus
Probab=71.62 E-value=46 Score=25.93 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=48.8
Q ss_pred EEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEcc-CceeEEEecCCEEEEEeC---CeEEEEEcC
Q psy3712 26 LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN-APVKGVRLRRDKIVVVLE---GLIKVYTFI 98 (109)
Q Consensus 26 v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~-s~V~~V~l~r~~lvVvl~---~~i~vy~~~ 98 (109)
+-=+..-+...-+|--|| .+-+.+||..+++.+..+.=. ..|-+|+++.+--||+.. .++++|+-.
T Consensus 62 VlD~~~s~Dnskf~s~Gg-------Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR 131 (307)
T KOG0316|consen 62 VLDAALSSDNSKFASCGG-------DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCR 131 (307)
T ss_pred eeeccccccccccccCCC-------CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcc
Confidence 333455556666655443 367999999999999876543 479999999999998864 789999865
No 107
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=71.18 E-value=11 Score=19.05 Aligned_cols=25 Identities=8% Similarity=0.384 Sum_probs=21.3
Q ss_pred CceeEEEecCCEEEEEeC-CeEEEEE
Q psy3712 72 APVKGVRLRRDKIVVVLE-GLIKVYT 96 (109)
Q Consensus 72 s~V~~V~l~r~~lvVvl~-~~i~vy~ 96 (109)
+.|.+|-+..++++|++. +-++||+
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 578999999999999998 7777774
No 108
>KOG1036|consensus
Probab=70.90 E-value=9.5 Score=30.21 Aligned_cols=68 Identities=13% Similarity=0.283 Sum_probs=43.4
Q ss_pred CEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEE-ccCceeEEEecCC--EEEEEeC------------
Q psy3712 25 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRD--KIVVVLE------------ 89 (109)
Q Consensus 25 ~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~-f~s~V~~V~l~r~--~lvVvl~------------ 89 (109)
+|--++.=...+.+ +.|| +.-.|.+||-..+|.+.++. |+.+|-.+-++.+ .|+|+..
T Consensus 234 PVNai~Fhp~~~tf--aTgG-----sDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~ 306 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTF--ATGG-----SDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQYERADTPTHE 306 (323)
T ss_pred EeceeEeccccceE--EecC-----CCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhhhcCCCCCCC
Confidence 34444444444444 3444 34689999999999998774 6677777766665 5555542
Q ss_pred -CeEEEEEcCC
Q psy3712 90 -GLIKVYTFIQ 99 (109)
Q Consensus 90 -~~i~vy~~~~ 99 (109)
+.|+|+.+.+
T Consensus 307 ~~~i~I~~l~d 317 (323)
T KOG1036|consen 307 RNAIFIRDLTD 317 (323)
T ss_pred CCceEEEeccc
Confidence 2477877764
No 109
>KOG0288|consensus
Probab=70.75 E-value=1.2 Score=36.52 Aligned_cols=88 Identities=16% Similarity=0.275 Sum_probs=59.4
Q ss_pred CCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCc--EEEEEE-ccCceeEEEecCCEE--EE
Q psy3712 12 PLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ--VVICLE-FNAPVKGVRLRRDKI--VV 86 (109)
Q Consensus 12 P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~--~i~el~-f~s~V~~V~l~r~~l--vV 86 (109)
|-...+.-+++.|++..+|.+.++..+|-=| +.+.+++||..-++ .+..|. ...+|.++....++= +.
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg-------~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iA 236 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGG-------SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIA 236 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcc-------hhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEe
Confidence 4333334456789999999999999997644 45889999998777 222221 123588888766532 22
Q ss_pred E-eCCeEEEEEcCCCCEEeEEe
Q psy3712 87 V-LEGLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 87 v-l~~~i~vy~~~~~~~ll~~~ 107 (109)
+ -+...++|+.. ..+++||+
T Consensus 237 as~d~~~r~Wnvd-~~r~~~TL 257 (459)
T KOG0288|consen 237 ASNDKNLRLWNVD-SLRLRHTL 257 (459)
T ss_pred ecCCCceeeeecc-chhhhhhh
Confidence 3 33568999998 46776664
No 110
>KOG4378|consensus
Probab=70.29 E-value=28 Score=29.70 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=44.4
Q ss_pred ceEEEEeCCCCcEEEEEEccCceeEEEecCCEEEEEeC---CeEEEEEcCCCCEEe
Q psy3712 52 NRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLE---GLIKVYTFIQCPQQL 104 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~lvVvl~---~~i~vy~~~~~~~ll 104 (109)
.|+.|||...++-.-.|.+..|..+|-+..+--..+.. .+|+-|++...+..+
T Consensus 231 kki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 231 KKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred ceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 68999999999999999999999999999886666554 689999998544433
No 111
>PF13964 Kelch_6: Kelch motif
Probab=70.26 E-value=10 Score=20.77 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCCCCCceEEEEeCCCCc
Q psy3712 37 YLALVGGGTHPKYPNNRVMIWDDLKKQ 63 (109)
Q Consensus 37 ~ialVg~g~~p~~~~n~v~IwDd~~~~ 63 (109)
-|-++||..+..-..+.+.+||.++++
T Consensus 13 ~iyv~GG~~~~~~~~~~v~~yd~~t~~ 39 (50)
T PF13964_consen 13 KIYVFGGYDNSGKYSNDVERYDPETNT 39 (50)
T ss_pred EEEEECCCCCCCCccccEEEEcCCCCc
Confidence 344556555546678999999999876
No 112
>KOG0273|consensus
Probab=69.80 E-value=33 Score=28.80 Aligned_cols=57 Identities=18% Similarity=0.338 Sum_probs=45.8
Q ss_pred CCceEEEEeCCCCcEEEEE-EccCceeEEEecCCEEEEE---eCCeEEEEEcCCCCEEeEEe
Q psy3712 50 PNNRVMIWDDLKKQVVICL-EFNAPVKGVRLRRDKIVVV---LEGLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 50 ~~n~v~IwDd~~~~~i~el-~f~s~V~~V~l~r~~lvVv---l~~~i~vy~~~~~~~ll~~~ 107 (109)
.++.|.+||...++.++.+ .-..||-+|..+.+-=-++ ++..|+|++.+ +=++.+++
T Consensus 430 ~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~-~~~l~~s~ 490 (524)
T KOG0273|consen 430 FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK-TGKLVKSY 490 (524)
T ss_pred cCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecccc-chheeEee
Confidence 5678999999999999987 6688999999996544444 45789999998 56777765
No 113
>KOG0264|consensus
Probab=69.72 E-value=15 Score=30.20 Aligned_cols=69 Identities=16% Similarity=0.319 Sum_probs=46.2
Q ss_pred EcCCccEEEEEcCCCCCCCCCceEEEEeCCC--CcEEE-EEEccCceeEEEecCC-EEEEEe---CCeEEEEEcCCCCE-
Q psy3712 31 MLFRCNYLALVGGGTHPKYPNNRVMIWDDLK--KQVVI-CLEFNAPVKGVRLRRD-KIVVVL---EGLIKVYTFIQCPQ- 102 (109)
Q Consensus 31 ml~~tn~ialVg~g~~p~~~~n~v~IwDd~~--~~~i~-el~f~s~V~~V~l~r~-~lvVvl---~~~i~vy~~~~~~~- 102 (109)
++...+++|-||.+ .+|.|||.++ .+.-. +-....+|-.++++.- -.++++ +..|.+|++.+ |+
T Consensus 236 h~~h~~lF~sv~dd-------~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn-L~~ 307 (422)
T KOG0264|consen 236 HPLHEDLFGSVGDD-------GKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN-LNK 307 (422)
T ss_pred cccchhhheeecCC-------CeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh-ccc
Confidence 56788999999965 6899999994 33332 3333567777887753 233333 47899999995 44
Q ss_pred EeEEe
Q psy3712 103 QLHIY 107 (109)
Q Consensus 103 ll~~~ 107 (109)
.+|++
T Consensus 308 ~lh~~ 312 (422)
T KOG0264|consen 308 PLHTF 312 (422)
T ss_pred Cceec
Confidence 45543
No 114
>KOG0289|consensus
Probab=69.02 E-value=68 Score=26.85 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=44.0
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccC--ceeEEE--ecCCEEEEEeCCeEEEEEcC
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA--PVKGVR--LRRDKIVVVLEGLIKVYTFI 98 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s--~V~~V~--l~r~~lvVvl~~~i~vy~~~ 98 (109)
.|+|.-+..=.+--++|.-. .+..|++||-++-+..-.+.-+. +|.++. .+...|++. .+.++||.+.
T Consensus 389 t~~vk~i~FsENGY~Lat~a-------dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~ 460 (506)
T KOG0289|consen 389 TGPVKAISFSENGYWLATAA-------DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICK 460 (506)
T ss_pred CCceeEEEeccCceEEEEEe-------cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEEEEe
Confidence 45555555444444444332 23459999999888666666555 365555 456678777 8999999887
No 115
>KOG0263|consensus
Probab=68.55 E-value=70 Score=28.13 Aligned_cols=86 Identities=17% Similarity=0.340 Sum_probs=57.0
Q ss_pred eEEEeecCCceeeeeec--CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEE-EccCceeEEEecC
Q psy3712 5 FRIYNCDPLKEKERQDF--TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICL-EFNAPVKGVRLRR 81 (109)
Q Consensus 5 f~Iy~~~P~~~~~~~~~--~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el-~f~s~V~~V~l~r 81 (109)
.|++.+.+.... |-| +.++|..+.+-..--++| .|+ ..+.++|||-..++.+.++ .-.+.|-.+.+++
T Consensus 559 VRlWDv~~G~~V--RiF~GH~~~V~al~~Sp~Gr~La--Sg~-----ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~ 629 (707)
T KOG0263|consen 559 VRLWDVSTGNSV--RIFTGHKGPVTALAFSPCGRYLA--SGD-----EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR 629 (707)
T ss_pred EEEEEcCCCcEE--EEecCCCCceEEEEEcCCCceEe--ecc-----cCCcEEEEEcCCCcchhhhhcccCceeEEEEec
Confidence 456666655442 223 355666666665444443 333 3578999999998877643 2366788999999
Q ss_pred CEEEEEe---CCeEEEEEcCC
Q psy3712 82 DKIVVVL---EGLIKVYTFIQ 99 (109)
Q Consensus 82 ~~lvVvl---~~~i~vy~~~~ 99 (109)
+--|.|. ++.|.+|++.+
T Consensus 630 dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 630 DGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCEEEecCCCCeEEEEEchh
Confidence 8655554 48999999985
No 116
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=67.95 E-value=14 Score=18.59 Aligned_cols=30 Identities=17% Similarity=0.384 Sum_probs=24.9
Q ss_pred CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEe
Q psy3712 22 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWD 58 (109)
Q Consensus 22 ~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwD 58 (109)
..+++.-+..-...+.+|-.| ..+.++|||
T Consensus 10 h~~~i~~i~~~~~~~~~~s~~-------~D~~i~vwd 39 (39)
T PF00400_consen 10 HSSSINSIAWSPDGNFLASGS-------SDGTIRVWD 39 (39)
T ss_dssp SSSSEEEEEEETTSSEEEEEE-------TTSEEEEEE
T ss_pred CCCcEEEEEEecccccceeeC-------CCCEEEEEC
Confidence 467889999999999998777 358899998
No 117
>KOG0643|consensus
Probab=67.87 E-value=23 Score=27.86 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=43.0
Q ss_pred ceEEEEeCCCCcEEEEE--EccCceeEEEecCCEEEEEeC---CeEEEEEcCCCCEEeEEec
Q psy3712 52 NRVMIWDDLKKQVVICL--EFNAPVKGVRLRRDKIVVVLE---GLIKVYTFIQCPQQLHIYL 108 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el--~f~s~V~~V~l~r~~lvVvl~---~~i~vy~~~~~~~ll~~~~ 108 (109)
-++-+||.++++...+- .-.+.|-+++++|++-..++. ..-.++++. ++..+++|.
T Consensus 169 G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~-tl~v~Kty~ 229 (327)
T KOG0643|consen 169 GSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR-TLEVLKTYT 229 (327)
T ss_pred CcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc-ceeeEEEee
Confidence 45889999998655432 345689999999998777665 567889998 688888875
No 118
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=67.72 E-value=63 Score=25.97 Aligned_cols=47 Identities=21% Similarity=0.516 Sum_probs=36.5
Q ss_pred CceEEEEeCCCCcEEEEEEccC-ceeEEEecCC-EEEEEeC-CeEEEEEcC
Q psy3712 51 NNRVMIWDDLKKQVVICLEFNA-PVKGVRLRRD-KIVVVLE-GLIKVYTFI 98 (109)
Q Consensus 51 ~n~v~IwDd~~~~~i~el~f~s-~V~~V~l~r~-~lvVvl~-~~i~vy~~~ 98 (109)
|+.+.||+-. |+.+..+.+++ +|..+-.+.+ .|+|+++ ..+++|++.
T Consensus 60 p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 60 PNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 3479999875 44678888874 7999988655 7888887 488999985
No 119
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=67.37 E-value=54 Score=25.12 Aligned_cols=94 Identities=11% Similarity=0.083 Sum_probs=52.8
Q ss_pred CCcceEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCC--------------cEEE
Q psy3712 1 MEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKK--------------QVVI 66 (109)
Q Consensus 1 ~~~Gf~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~--------------~~i~ 66 (109)
|++|.-+.+.+.......+-++..++.-++.+..-|+++.++|.. +.|..+|-..= +...
T Consensus 20 Te~Gly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~------~~L~~~~L~~L~~~~~~~~~~~~~~~~~~ 93 (302)
T smart00036 20 TEEGLYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKK------PQLYSHPLSALVEKKEALGSARLVIRKNV 93 (302)
T ss_pred eCCceEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCc------ceEEEEEHHHhhhhhhccCCccccccccc
Confidence 567766666554322233344566888999999999998887642 34666663100 0000
Q ss_pred EEEcc----CceeEEEecC--CEEEEEeCCeEEEEEcCCC
Q psy3712 67 CLEFN----APVKGVRLRR--DKIVVVLEGLIKVYTFIQC 100 (109)
Q Consensus 67 el~f~----s~V~~V~l~r--~~lvVvl~~~i~vy~~~~~ 100 (109)
-...+ -.--++...+ -.+++++.++|.+|...++
T Consensus 94 ~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~ 133 (302)
T smart00036 94 LTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNP 133 (302)
T ss_pred eEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccCh
Confidence 00010 0111222222 4589999999999987644
No 120
>KOG0650|consensus
Probab=66.59 E-value=36 Score=29.60 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=50.8
Q ss_pred CEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEE-EccCceeEEEec--CCEEEEEeCCeEEEEEcCC
Q psy3712 25 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICL-EFNAPVKGVRLR--RDKIVVVLEGLIKVYTFIQ 99 (109)
Q Consensus 25 ~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el-~f~s~V~~V~l~--r~~lvVvl~~~i~vy~~~~ 99 (109)
++.-++--.+-.++|.|-+.. ..+.|.|.+.++++.-.-+ .-...|..+++. +-.++|++++.|.||+|..
T Consensus 523 ~i~~vtWHrkGDYlatV~~~~----~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k 596 (733)
T KOG0650|consen 523 SIRQVTWHRKGDYLATVMPDS----GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK 596 (733)
T ss_pred ccceeeeecCCceEEEeccCC----CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhH
Confidence 344445556778888886432 4577999998887755333 124468888875 5689999999999999974
No 121
>KOG2048|consensus
Probab=66.25 E-value=57 Score=28.46 Aligned_cols=69 Identities=12% Similarity=0.215 Sum_probs=53.8
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEE-EccCceeEEEec---CCEEEEEeC-CeEEEEEc
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICL-EFNAPVKGVRLR---RDKIVVVLE-GLIKVYTF 97 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el-~f~s~V~~V~l~---r~~lvVvl~-~~i~vy~~ 97 (109)
.+++..+-....-|++|..++- -.+.+||.++++--.-. ..+.+|.+.-.+ ++++||+.. ++++=|++
T Consensus 475 ~~~I~~l~~SsdG~yiaa~~t~-------g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 475 CPSISRLVVSSDGNYIAAISTR-------GQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDI 547 (691)
T ss_pred CCcceeEEEcCCCCEEEEEecc-------ceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEec
Confidence 5688888888999999988743 46899999988765443 455667766655 889999987 79999998
Q ss_pred C
Q psy3712 98 I 98 (109)
Q Consensus 98 ~ 98 (109)
+
T Consensus 548 ~ 548 (691)
T KOG2048|consen 548 E 548 (691)
T ss_pred c
Confidence 4
No 122
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=65.69 E-value=32 Score=24.80 Aligned_cols=39 Identities=10% Similarity=0.207 Sum_probs=31.4
Q ss_pred CCceEEEEeCCCCcEEEEEEcc-CceeEEEe---cCCEEEEEeC
Q psy3712 50 PNNRVMIWDDLKKQVVICLEFN-APVKGVRL---RRDKIVVVLE 89 (109)
Q Consensus 50 ~~n~v~IwDd~~~~~i~el~f~-s~V~~V~l---~r~~lvVvl~ 89 (109)
..++|.++|.. ++.+.++.+| +.+.++.+ .++.|.|...
T Consensus 203 ~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 203 GGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp TTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred CCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 44789999988 9999999999 88999999 5677877653
No 123
>KOG1446|consensus
Probab=65.60 E-value=56 Score=25.89 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=47.3
Q ss_pred EEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEc--cCceeEEEecCCEEEEEeCCeEEEEEcC
Q psy3712 30 EMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF--NAPVKGVRLRRDKIVVVLEGLIKVYTFI 98 (109)
Q Consensus 30 eml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f--~s~V~~V~l~r~~lvVvl~~~i~vy~~~ 98 (109)
.+=..+++| +.|.+ ...+.+|+.+++..+....= .+++.-+|.+..+...+..++--++=++
T Consensus 239 ~ftPds~Fv-l~gs~------dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 239 TFTPDSKFV-LSGSD------DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLP 302 (311)
T ss_pred EECCCCcEE-EEecC------CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEec
Confidence 334555555 44432 36799999999999998876 5789999999999999988777766665
No 124
>KOG2106|consensus
Probab=65.59 E-value=39 Score=28.82 Aligned_cols=60 Identities=27% Similarity=0.462 Sum_probs=45.5
Q ss_pred cCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccC---ceeEEEecCCEEEEEeC
Q psy3712 21 FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA---PVKGVRLRRDKIVVVLE 89 (109)
Q Consensus 21 ~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s---~V~~V~l~r~~lvVvl~ 89 (109)
.++||+....||.+--++. ||+ .+|+..||+.- +.+.|++.|. +|+.|-=.+.-|.|-+.
T Consensus 285 aH~ggv~~L~~lr~GtllS---GgK-----DRki~~Wd~~y-~k~r~~elPe~~G~iRtv~e~~~di~vGTt 347 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLS---GGK-----DRKIILWDDNY-RKLRETELPEQFGPIRTVAEGKGDILVGTT 347 (626)
T ss_pred ecCCceEEEEEecCccEee---cCc-----cceEEeccccc-cccccccCchhcCCeeEEecCCCcEEEeec
Confidence 3589999999998887776 453 48999999554 4478888887 68888777776666544
No 125
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=64.79 E-value=66 Score=28.98 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=36.7
Q ss_pred ceEEEEeCCCCc-----EEEEEEccCceeEEEecCCE--EEEEeCCe-EEEEEcC
Q psy3712 52 NRVMIWDDLKKQ-----VVICLEFNAPVKGVRLRRDK--IVVVLEGL-IKVYTFI 98 (109)
Q Consensus 52 n~v~IwDd~~~~-----~i~el~f~s~V~~V~l~r~~--lvVvl~~~-i~vy~~~ 98 (109)
++|.+-+-+..- .-.+++|+++|.+|-++++. ++|++.+. +.+|...
T Consensus 402 ~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 402 NKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 456666665543 23799999999999998888 88888876 9999954
No 126
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=64.72 E-value=12 Score=28.72 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=31.8
Q ss_pred CCCceEEEEeCCCCcEEEEEEccCceeE---------EEecCC----EEEEEeC---CeEEEEEcCC
Q psy3712 49 YPNNRVMIWDDLKKQVVICLEFNAPVKG---------VRLRRD----KIVVVLE---GLIKVYTFIQ 99 (109)
Q Consensus 49 ~~~n~v~IwDd~~~~~i~el~f~s~V~~---------V~l~r~----~lvVvl~---~~i~vy~~~~ 99 (109)
..|-||.+||.++++.+..+.||.++.. |-.++. ..+-+.+ .-+-||++.+
T Consensus 31 ~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~ 97 (287)
T PF03022_consen 31 VCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLAT 97 (287)
T ss_dssp TS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTT
T ss_pred CCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccC
Confidence 4567999999999999999999988766 333322 3333333 3677787763
No 127
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=64.54 E-value=17 Score=19.90 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=19.3
Q ss_pred EEEEcCC--CCCCCCCceEEEEeCCCCc
Q psy3712 38 LALVGGG--THPKYPNNRVMIWDDLKKQ 63 (109)
Q Consensus 38 ialVg~g--~~p~~~~n~v~IwDd~~~~ 63 (109)
|-++||- ..+.-..+.+.+||.++++
T Consensus 14 iyv~GG~~~~~~~~~~~~v~~~d~~t~~ 41 (49)
T PF07646_consen 14 IYVFGGYGTDNGGSSSNDVWVFDTETNQ 41 (49)
T ss_pred EEEECCcccCCCCcccceeEEEECCCCE
Confidence 3355655 4677788999999998875
No 128
>PRK01742 tolB translocation protein TolB; Provisional
Probab=64.46 E-value=71 Score=25.42 Aligned_cols=70 Identities=14% Similarity=0.044 Sum_probs=45.3
Q ss_pred CEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeC--C--eEEEEEcC
Q psy3712 25 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLE--G--LIKVYTFI 98 (109)
Q Consensus 25 ~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~--~--~i~vy~~~ 98 (109)
.+.-...-.+.+.+|+++.+. ....+.+||..+++...--.++....++.++.| +|++... + .|++++..
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~----~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~ 280 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFEN----KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN 280 (429)
T ss_pred ccccceEcCCCCEEEEEEecC----CCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECC
Confidence 455555666677778876432 124699999988875544556666778888875 6777653 3 35566664
No 129
>KOG1539|consensus
Probab=64.40 E-value=82 Score=28.34 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=41.5
Q ss_pred ceEEEEeCCCCcEEE-EEEccCceeEEEecCCEEEEEeCCeEEEEEcCC
Q psy3712 52 NRVMIWDDLKKQVVI-CLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQ 99 (109)
Q Consensus 52 n~v~IwDd~~~~~i~-el~f~s~V~~V~l~r~~lvVvl~~~i~vy~~~~ 99 (109)
|.-++||.++=..+. .=..|..|.++.-.++.+.|+..++|++|...+
T Consensus 56 ksfqvYd~~kl~ll~vs~~lp~~I~alas~~~~vy~A~g~~i~~~~rgk 104 (910)
T KOG1539|consen 56 KSFQVYDVNKLNLLFVSKPLPDKITALASDKDYVYVASGNKIYAYARGK 104 (910)
T ss_pred ceEEEEeccceEEEEecCCCCCceEEEEecCceEEEecCcEEEEEEccc
Confidence 568999999877664 336788999999999999999999999999873
No 130
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=64.14 E-value=40 Score=24.81 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=39.7
Q ss_pred CCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEE---------------EccCceeEEEecCCE-EEEE
Q psy3712 24 GGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICL---------------EFNAPVKGVRLRRDK-IVVV 87 (109)
Q Consensus 24 g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el---------------~f~s~V~~V~l~r~~-lvVv 87 (109)
.++...+- ...-++|+...| .+.+||.++++.+..- .-...|..+.++.+- .+|.
T Consensus 13 s~~~~l~~-~~~~Ll~iT~~G--------~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ 83 (219)
T PF07569_consen 13 SPVSFLEC-NGSYLLAITSSG--------LLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT 83 (219)
T ss_pred CceEEEEe-CCCEEEEEeCCC--------eEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE
Confidence 34445443 223355665555 5999999998876543 233568888888553 3333
Q ss_pred eC-CeEEEEEcC
Q psy3712 88 LE-GLIKVYTFI 98 (109)
Q Consensus 88 l~-~~i~vy~~~ 98 (109)
+. .+.|.|+..
T Consensus 84 lsng~~y~y~~~ 95 (219)
T PF07569_consen 84 LSNGDSYSYSPD 95 (219)
T ss_pred EeCCCEEEeccc
Confidence 43 667777654
No 131
>KOG0303|consensus
Probab=63.44 E-value=49 Score=27.40 Aligned_cols=73 Identities=18% Similarity=0.092 Sum_probs=48.0
Q ss_pred cceEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEcc---CceeEEEe
Q psy3712 3 DGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN---APVKGVRL 79 (109)
Q Consensus 3 ~Gf~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~---s~V~~V~l 79 (109)
+-..|+|+.+-....+-+ .+--+..|-++.+-=.+++.- -.+||+|||.++++.+.|-.-. .+-++|.+
T Consensus 154 n~v~iWnv~tgeali~l~---hpd~i~S~sfn~dGs~l~Ttc-----kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl 225 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD---HPDMVYSMSFNRDGSLLCTTC-----KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFL 225 (472)
T ss_pred ceEEEEeccCCceeeecC---CCCeEEEEEeccCCceeeeec-----ccceeEEEcCCCCcEeeecccccCCCcceeEEe
Confidence 345788888887766533 344455555555444444443 3478999999999999987332 36777777
Q ss_pred cCCE
Q psy3712 80 RRDK 83 (109)
Q Consensus 80 ~r~~ 83 (109)
....
T Consensus 226 ~~g~ 229 (472)
T KOG0303|consen 226 ASGK 229 (472)
T ss_pred ccCc
Confidence 6655
No 132
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.91 E-value=30 Score=25.52 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=33.0
Q ss_pred EEEEccCceeEEEecCCEEEEEeC-CeEEEEEcCCCCEEeE
Q psy3712 66 ICLEFNAPVKGVRLRRDKIVVVLE-GLIKVYTFIQCPQQLH 105 (109)
Q Consensus 66 ~el~f~s~V~~V~l~r~~lvVvl~-~~i~vy~~~~~~~ll~ 105 (109)
--|..++++.-+..+.+++.+++. ..+||||+. +.+.+.
T Consensus 7 P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~-~~k~~~ 46 (219)
T PF07569_consen 7 PPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLK-KGKAVL 46 (219)
T ss_pred CcEecCCceEEEEeCCCEEEEEeCCCeEEEEECC-CCeecc
Confidence 467889999999999999999988 799999998 466544
No 133
>KOG0319|consensus
Probab=61.20 E-value=46 Score=29.36 Aligned_cols=67 Identities=15% Similarity=0.317 Sum_probs=55.0
Q ss_pred EEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEE-EEccCceeEEEecC---CEEEEEeC-CeEEEEEcCC
Q psy3712 26 LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVIC-LEFNAPVKGVRLRR---DKIVVVLE-GLIKVYTFIQ 99 (109)
Q Consensus 26 v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~e-l~f~s~V~~V~l~r---~~lvVvl~-~~i~vy~~~~ 99 (109)
+..+.+....+-+++|.. ...+.+||..+.+.+.. .-|..+|.++|+-. ++++|+.. .++++|+.+.
T Consensus 284 ~~~~~~~~~~~~~l~vta-------eQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~ 355 (775)
T KOG0319|consen 284 IDHLLAIESMSQLLLVTA-------EQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPT 355 (775)
T ss_pred hhcceeccccCceEEEEc-------cceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCC
Confidence 667777778888888874 45689999998887764 45888999999988 89999998 7899998883
No 134
>KOG0649|consensus
Probab=61.13 E-value=45 Score=26.13 Aligned_cols=60 Identities=18% Similarity=0.334 Sum_probs=49.1
Q ss_pred cCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCCEEEEEe-CCeEEEEEcCC
Q psy3712 32 LFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQ 99 (109)
Q Consensus 32 l~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~lvVvl-~~~i~vy~~~~ 99 (109)
-.+...+ +.|||+ ++-+|+-......+-+.+|.+|..|-+-.|-++++= .+.+.-|+++.
T Consensus 215 a~~edWl-vCGgGp-------~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 215 AVNEDWL-VCGGGP-------KLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eccCceE-EecCCC-------ceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeecc
Confidence 3455555 556663 589999999999999999999999999999998888 47888888764
No 135
>KOG3881|consensus
Probab=60.15 E-value=79 Score=25.96 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=50.9
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEE----------EEccCceeEEEecCC----EEEEEe
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVIC----------LEFNAPVKGVRLRRD----KIVVVL 88 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~e----------l~f~s~V~~V~l~r~----~lvVvl 88 (109)
..|+..++.-...-.|..-||-++ .|-+.|||..+.+.|.+ +.-|-=+.++++-.+ .++-++
T Consensus 148 g~g~~~~r~~~~~p~Iva~GGke~----~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T 223 (412)
T KOG3881|consen 148 GPGLYDVRQTDTDPYIVATGGKEN----INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT 223 (412)
T ss_pred CCceeeeccCCCCCceEecCchhc----ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe
Confidence 457788888877777777777554 68999999998766643 334444566666555 555555
Q ss_pred C-CeEEEEEcCC
Q psy3712 89 E-GLIKVYTFIQ 99 (109)
Q Consensus 89 ~-~~i~vy~~~~ 99 (109)
. ..+++|+...
T Consensus 224 ~~hqvR~YDt~~ 235 (412)
T KOG3881|consen 224 RYHQVRLYDTRH 235 (412)
T ss_pred cceeEEEecCcc
Confidence 5 7899998874
No 136
>KOG0292|consensus
Probab=59.61 E-value=43 Score=30.57 Aligned_cols=77 Identities=14% Similarity=0.310 Sum_probs=55.3
Q ss_pred CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEcc-CceeEEEecCCEEEE--EeC-CeEEEEEc
Q psy3712 22 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN-APVKGVRLRRDKIVV--VLE-GLIKVYTF 97 (109)
Q Consensus 22 ~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~-s~V~~V~l~r~~lvV--vl~-~~i~vy~~ 97 (109)
++|+|.=+..-.+-.+ +|+||. .-++++|+-++++.+..+.=. .=|+.+.+.++.=-| +.+ ..|.|||.
T Consensus 50 HdGpVRgv~FH~~qpl--FVSGGD-----DykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw 122 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQPL--FVSGGD-----DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW 122 (1202)
T ss_pred cCCccceeeecCCCCe--EEecCC-----ccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEec
Confidence 5899988877777666 477775 468999999999988655433 348888888885433 333 68999998
Q ss_pred CCCCEEeEE
Q psy3712 98 IQCPQQLHI 106 (109)
Q Consensus 98 ~~~~~ll~~ 106 (109)
. +-+.|+.
T Consensus 123 q-sr~~iav 130 (1202)
T KOG0292|consen 123 Q-SRKCIAV 130 (1202)
T ss_pred c-CCceEEE
Confidence 7 4555554
No 137
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=59.24 E-value=9.6 Score=20.37 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCCCCCceEEEEeCCCCc
Q psy3712 36 NYLALVGGGTHPKYPNNRVMIWDDLKKQ 63 (109)
Q Consensus 36 n~ialVg~g~~p~~~~n~v~IwDd~~~~ 63 (109)
|.|-++||-....-..+.+..||..+++
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 39 (47)
T PF01344_consen 12 NKIYVIGGYDGNNQPTNSVEVYDPETNT 39 (47)
T ss_dssp TEEEEEEEBESTSSBEEEEEEEETTTTE
T ss_pred CEEEEEeeecccCceeeeEEEEeCCCCE
Confidence 4455667665556678999999999876
No 138
>KOG1274|consensus
Probab=58.05 E-value=70 Score=28.91 Aligned_cols=72 Identities=13% Similarity=0.202 Sum_probs=52.3
Q ss_pred cCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCc-EEEEEE-ccCceeEEEecCCEEEEEeC-CeEEEEEc
Q psy3712 21 FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ-VVICLE-FNAPVKGVRLRRDKIVVVLE-GLIKVYTF 97 (109)
Q Consensus 21 ~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~-~i~el~-f~s~V~~V~l~r~~lvVvl~-~~i~vy~~ 97 (109)
.+.+|...+..=.+-++|..+| +...+.+|++.... .--.|. -.+.|.++...-.+++...+ +.|.+|+|
T Consensus 11 aht~G~t~i~~d~~gefi~tcg-------sdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCG-------SDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEec-------CCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeC
Confidence 3466777777777888887776 34568999987652 111122 56778888888888888877 78999999
Q ss_pred CC
Q psy3712 98 IQ 99 (109)
Q Consensus 98 ~~ 99 (109)
+.
T Consensus 84 ps 85 (933)
T KOG1274|consen 84 PS 85 (933)
T ss_pred CC
Confidence 94
No 139
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.42 E-value=9.6 Score=26.93 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=41.6
Q ss_pred EeCC-CCcEEEEEEccCceeEEEecCCEEEEEeCCeEE-EEEcCCCCEEeEEecC
Q psy3712 57 WDDL-KKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIK-VYTFIQCPQQLHIYLY 109 (109)
Q Consensus 57 wDd~-~~~~i~el~f~s~V~~V~l~r~~lvVvl~~~i~-vy~~~~~~~ll~~~~~ 109 (109)
.||. ..-++.+++.-.||++++++.+.+-|--..-++ ||.+..+|++-.+..|
T Consensus 88 LNdY~a~Ip~sDi~kynpIlA~~~nGn~M~IRerGPl~~IYplds~peL~nqvyy 142 (155)
T COG3915 88 LNDYWAEIPYSDIEKYNPILAIQNNGNYMQIRERGPLWSIYPLDSSPELDNQVYY 142 (155)
T ss_pred ecceeccCcHHHhhhcccEEEEEeCCcEEEEeccCceEEEeecCCChhhhhhhhh
Confidence 3443 445667788888999999999999998887765 8999988997665543
No 140
>KOG0296|consensus
Probab=55.98 E-value=1.1e+02 Score=24.96 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=56.1
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEE-ccCceeEEEecCCEEEEEeC---CeEEEEEcC
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVLE---GLIKVYTFI 98 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~-f~s~V~~V~l~r~~lvVvl~---~~i~vy~~~ 98 (109)
.+++=.+..-. +|-+|.-|||. ++-.+||..++...+|+. ...+|..+-++.+--.+++. .+|.||..+
T Consensus 64 ~~svFavsl~P-~~~l~aTGGgD------D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 64 TDSVFAVSLHP-NNNLVATGGGD------DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred CCceEEEEeCC-CCceEEecCCC------ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 45666666666 55556678775 678999999999999886 46689999999999999977 589999887
Q ss_pred C
Q psy3712 99 Q 99 (109)
Q Consensus 99 ~ 99 (109)
.
T Consensus 137 t 137 (399)
T KOG0296|consen 137 T 137 (399)
T ss_pred c
Confidence 4
No 141
>KOG0640|consensus
Probab=55.80 E-value=59 Score=26.29 Aligned_cols=96 Identities=11% Similarity=0.264 Sum_probs=57.5
Q ss_pred eEEEeecCCceeeeeecC---CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEE---EccCceeEEE
Q psy3712 5 FRIYNCDPLKEKERQDFT---DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICL---EFNAPVKGVR 78 (109)
Q Consensus 5 f~Iy~~~P~~~~~~~~~~---~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el---~f~s~V~~V~ 78 (109)
.|+|+++.+++..+...+ .+++.- .-|+++==.+|.+.++ -.++|||-..++-+..+ .=.++|.+..
T Consensus 240 ~rlYdv~T~QcfvsanPd~qht~ai~~--V~Ys~t~~lYvTaSkD-----G~IklwDGVS~rCv~t~~~AH~gsevcSa~ 312 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSANPDDQHTGAITQ--VRYSSTGSLYVTASKD-----GAIKLWDGVSNRCVRTIGNAHGGSEVCSAV 312 (430)
T ss_pred eeEEeccceeEeeecCcccccccceeE--EEecCCccEEEEeccC-----CcEEeeccccHHHHHHHHhhcCCceeeeEE
Confidence 478888888776653322 234443 4445444445555443 46999998776644322 2245666666
Q ss_pred ecCCEEEEEe---CCeEEEEEcCCCCEEeEEec
Q psy3712 79 LRRDKIVVVL---EGLIKVYTFIQCPQQLHIYL 108 (109)
Q Consensus 79 l~r~~lvVvl---~~~i~vy~~~~~~~ll~~~~ 108 (109)
++|+-=.|.. +.-+++|.+. +-+.|..|+
T Consensus 313 Ftkn~kyiLsSG~DS~vkLWEi~-t~R~l~~Yt 344 (430)
T KOG0640|consen 313 FTKNGKYILSSGKDSTVKLWEIS-TGRMLKEYT 344 (430)
T ss_pred EccCCeEEeecCCcceeeeeeec-CCceEEEEe
Confidence 6666444443 3568899998 457777764
No 142
>KOG1273|consensus
Probab=55.74 E-value=80 Score=25.57 Aligned_cols=62 Identities=13% Similarity=0.307 Sum_probs=42.7
Q ss_pred cCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEc--cCceeEEEecC--CEEEEEeC-CeEEEEEcCC
Q psy3712 32 LFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF--NAPVKGVRLRR--DKIVVVLE-GLIKVYTFIQ 99 (109)
Q Consensus 32 l~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f--~s~V~~V~l~r--~~lvVvl~-~~i~vy~~~~ 99 (109)
..|..-..++|.+ +-++.++|..+-+.++.+.- .+.|+.|.+++ +++++-.. +-|++|++.+
T Consensus 161 fdr~g~yIitGts------KGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 161 FDRRGKYIITGTS------KGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred ccCCCCEEEEecC------cceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 4444444566654 46899999999988875544 45788887765 46666555 5688999873
No 143
>KOG0295|consensus
Probab=55.60 E-value=1.1e+02 Score=24.94 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=56.0
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCc-eeEEEecCCEEEEEeC---CeEEEEEcC
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAP-VKGVRLRRDKIVVVLE---GLIKVYTFI 98 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~-V~~V~l~r~~lvVvl~---~~i~vy~~~ 98 (109)
+.+++.|..+...+.|+=-+ -.+.++.||..++-.+..+.=+++ |+-|+.++|-.+++.. +.+++|-+.
T Consensus 193 ~h~vS~V~f~P~gd~ilS~s-------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~ 265 (406)
T KOG0295|consen 193 EHGVSSVFFLPLGDHILSCS-------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA 265 (406)
T ss_pred ccceeeEEEEecCCeeeecc-------cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEec
Confidence 56899999999888886544 347899999999987766655554 9999999999888864 689999887
No 144
>KOG0299|consensus
Probab=55.54 E-value=69 Score=26.79 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=38.8
Q ss_pred ceEEEEeCCCCcEEEEEEc-cCceeEEEecC---CEEEEEeCCeEEEEEcCCCCEE
Q psy3712 52 NRVMIWDDLKKQVVICLEF-NAPVKGVRLRR---DKIVVVLEGLIKVYTFIQCPQQ 103 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f-~s~V~~V~l~r---~~lvVvl~~~i~vy~~~~~~~l 103 (109)
+.+.|||..+.+.+..+.= ..+|.++.+++ ++.....+.+|.+|++.+ +..
T Consensus 224 ~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~s~ 278 (479)
T KOG0299|consen 224 RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-LSY 278 (479)
T ss_pred ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-hHH
Confidence 6789999999988766332 44788888876 467778889999999874 443
No 145
>KOG4497|consensus
Probab=55.08 E-value=64 Score=26.32 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=56.9
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecC--CEEEEEeC-CeEEEEEcCC
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRR--DKIVVVLE-GLIKVYTFIQ 99 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r--~~lvVvl~-~~i~vy~~~~ 99 (109)
..|+|....--++-++|--.. + =||.|.|||-++.+.-+-+.=.+||++..... -|++|+.. .+.|.+..+.
T Consensus 318 k~g~g~lafs~Ds~y~aTrnd----~-~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 318 KCGAGKLAFSCDSTYAATRND----K-YPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred ccccceeeecCCceEEeeecC----C-CCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 467888777778888877543 2 36999999999999888888999999998864 47887776 6788887763
No 146
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=54.59 E-value=98 Score=23.89 Aligned_cols=67 Identities=18% Similarity=0.020 Sum_probs=45.4
Q ss_pred EEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeC----CeEEEEEcCC
Q psy3712 29 VEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLE----GLIKVYTFIQ 99 (109)
Q Consensus 29 veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~----~~i~vy~~~~ 99 (109)
...-.+-+.+|++..+. ....+.+||..+++......++..+.+..++.| ++++... ..|++|++.+
T Consensus 195 p~~Spdg~~la~~~~~~----~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~ 267 (417)
T TIGR02800 195 PAWSPDGQKLAYVSFES----GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG 267 (417)
T ss_pred ccCCCCCCEEEEEEcCC----CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence 33444556677765332 125799999998876665667777778888775 5666653 3699999874
No 147
>KOG1446|consensus
Probab=53.99 E-value=1.1e+02 Score=24.27 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=32.7
Q ss_pred CceEEEEeCCCCcEEEEEEccC-ceeEEEecCCEEEEEeCC-eEEEEEcC
Q psy3712 51 NNRVMIWDDLKKQVVICLEFNA-PVKGVRLRRDKIVVVLEG-LIKVYTFI 98 (109)
Q Consensus 51 ~n~v~IwDd~~~~~i~el~f~s-~V~~V~l~r~~lvVvl~~-~i~vy~~~ 98 (109)
.+.|++||-+..+...-+.-.. ||-+--=..-.++++.++ .|.+|++.
T Consensus 121 D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~R 170 (311)
T KOG1446|consen 121 DKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLR 170 (311)
T ss_pred CCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEec
Confidence 3568888888776666655544 566655555566666665 88888876
No 148
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=53.69 E-value=59 Score=27.12 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=34.0
Q ss_pred ceEEEEeCCCCcEEEEEEccC---ceeEEEecCC------EEEEEeCCeEEEE
Q psy3712 52 NRVMIWDDLKKQVVICLEFNA---PVKGVRLRRD------KIVVVLEGLIKVY 95 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f~s---~V~~V~l~r~------~lvVvl~~~i~vy 95 (109)
+.|.+||-++++.+-.|..++ -.+.||...+ +.-++|..+|+.|
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEE
Confidence 789999999999999999984 6889999877 7888888888755
No 149
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=53.25 E-value=87 Score=23.50 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=39.5
Q ss_pred EEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCC--CCcEEEEEEccCceeEEEecC-C
Q psy3712 6 RIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL--KKQVVICLEFNAPVKGVRLRR-D 82 (109)
Q Consensus 6 ~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~--~~~~i~el~f~s~V~~V~l~r-~ 82 (109)
|+|+|+||.-.---.-+..+...+.=-.+.=++| .+ .+++.+||.. ..+..+.+..-++|..+.-+. .
T Consensus 1 ~v~~~H~F~sQ~v~~~~~EP~~~c~~g~d~Lfva-~~--------g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~G 71 (215)
T PF14761_consen 1 RVYNCHPFGSQNVVPCEQEPTAVCCGGPDALFVA-AS--------GCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAG 71 (215)
T ss_pred CeEEecccCCceeeccccCcceeeccCCceEEEE-cC--------CCEEEEEEcccCCCceeEEEcchhheeEEEecccc
Confidence 6899999965211000113333332211111244 22 2789999966 445556655556777665543 3
Q ss_pred EEEEEeCC
Q psy3712 83 KIVVVLEG 90 (109)
Q Consensus 83 ~lvVvl~~ 90 (109)
.-+|.+|+
T Consensus 72 DYlvTlE~ 79 (215)
T PF14761_consen 72 DYLVTLEE 79 (215)
T ss_pred ceEEEEEe
Confidence 44555554
No 150
>KOG0279|consensus
Probab=52.55 E-value=1.1e+02 Score=24.29 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=37.7
Q ss_pred CCceEEEEeCCCCcEEEEEEccC-ceeEEEecCCEEEEEeC---CeEEEEEcC
Q psy3712 50 PNNRVMIWDDLKKQVVICLEFNA-PVKGVRLRRDKIVVVLE---GLIKVYTFI 98 (109)
Q Consensus 50 ~~n~v~IwDd~~~~~i~el~f~s-~V~~V~l~r~~lvVvl~---~~i~vy~~~ 98 (109)
-...+++||..+++...++.=+. .|+.|-++.|-==++.. +.|.+|+.-
T Consensus 83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~ 135 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL 135 (315)
T ss_pred ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec
Confidence 45789999999998888777655 69999999875555544 567777765
No 151
>KOG1272|consensus
Probab=52.36 E-value=16 Score=30.67 Aligned_cols=57 Identities=23% Similarity=0.394 Sum_probs=44.6
Q ss_pred CCceEEEEeCCCCcEEEEEEc-cCceeEEEecCCEEE---EEeCCeEEEEEcCCCCEEeEEe
Q psy3712 50 PNNRVMIWDDLKKQVVICLEF-NAPVKGVRLRRDKIV---VVLEGLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 50 ~~n~v~IwDd~~~~~i~el~f-~s~V~~V~l~r~~lv---Vvl~~~i~vy~~~~~~~ll~~~ 107 (109)
+.-.|-+|......+...+-+ +++|.+|-+.++==- --+++++.||++. +-++++++
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR-~~~ql~t~ 331 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLR-NFYQLHTY 331 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeec-ccccccee
Confidence 456799999999998886555 779999999887322 3356899999999 46778775
No 152
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=52.13 E-value=1.3e+02 Score=24.67 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=29.3
Q ss_pred CceEEEEeCCCCcEEEEEEccCceeEEEecCCEEEEEeCCeEEEEEcCCCCEEeEEe
Q psy3712 51 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 51 ~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~lvVvl~~~i~vy~~~~~~~ll~~~ 107 (109)
.+++.|+..-+++....++.+.++.+|.- ...|.+.-++.|.+|+..+ -+.++++
T Consensus 88 ~~~I~I~kn~~~~~~k~i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~-~~~i~~i 142 (443)
T PF04053_consen 88 SSTIKIYKNFKNEVVKSIKLPFSVEKIFG-GNLLGVKSSDFICFYDWET-GKLIRRI 142 (443)
T ss_dssp TS-EEEEETTEE-TT-----SS-EEEEE--SSSEEEEETTEEEEE-TTT---EEEEE
T ss_pred CCeEEEEEcCccccceEEcCCcccceEEc-CcEEEEECCCCEEEEEhhH-cceeeEE
Confidence 46788876666655556666666777776 4455555556699999984 5777664
No 153
>KOG0272|consensus
Probab=51.61 E-value=1.2e+02 Score=25.16 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=38.1
Q ss_pred CCceEEEEeCCCCcEEEEEEccC-ceeEEEecC--C-EEEE-EeCCeEEEEEcCCCCEEeE
Q psy3712 50 PNNRVMIWDDLKKQVVICLEFNA-PVKGVRLRR--D-KIVV-VLEGLIKVYTFIQCPQQLH 105 (109)
Q Consensus 50 ~~n~v~IwDd~~~~~i~el~f~s-~V~~V~l~r--~-~lvV-vl~~~i~vy~~~~~~~ll~ 105 (109)
+.|..+|||-+..+....|--.+ -|..||..+ . +|+= ..++.+.||+-. +..++.
T Consensus 365 ~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~-~~~~~k 424 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR-TWSPLK 424 (459)
T ss_pred CCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCC-Ccccch
Confidence 45889999999998866655544 488899986 2 3332 345889999876 344443
No 154
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=50.91 E-value=28 Score=27.88 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=30.9
Q ss_pred eEEEEeCCCCcEEEEEEccCceeEEE-ecCCEEEEEeC-CeEEEEEcC
Q psy3712 53 RVMIWDDLKKQVVICLEFNAPVKGVR-LRRDKIVVVLE-GLIKVYTFI 98 (109)
Q Consensus 53 ~v~IwDd~~~~~i~el~f~s~V~~V~-l~r~~lvVvl~-~~i~vy~~~ 98 (109)
.|.+||.++=+...|++-|..=+..- ..+..+.+.-+ .-++||||.
T Consensus 68 vv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T 115 (342)
T PF06433_consen 68 VVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT 115 (342)
T ss_dssp EEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES
T ss_pred EEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC
Confidence 48999999999999999998522222 34444444333 678999997
No 155
>KOG0771|consensus
Probab=50.90 E-value=1e+02 Score=25.31 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=17.3
Q ss_pred eEEEecCCEEEEEeC-CeEEEEEcCCCCEEeE
Q psy3712 75 KGVRLRRDKIVVVLE-GLIKVYTFIQCPQQLH 105 (109)
Q Consensus 75 ~~V~l~r~~lvVvl~-~~i~vy~~~~~~~ll~ 105 (109)
++|.+..+++++-.. +.|-||+.. .|+.++
T Consensus 287 l~VS~dGkf~AlGT~dGsVai~~~~-~lq~~~ 317 (398)
T KOG0771|consen 287 LAVSDDGKFLALGTMDGSVAIYDAK-SLQRLQ 317 (398)
T ss_pred EEEcCCCcEEEEeccCCcEEEEEec-eeeeeE
Confidence 345555556666544 677777766 355443
No 156
>KOG0271|consensus
Probab=50.24 E-value=1e+02 Score=25.54 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=53.2
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEE-ccCceeEEEecCCEEEEEeCCeEEEEEc
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVLEGLIKVYTF 97 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~-f~s~V~~V~l~r~~lvVvl~~~i~vy~~ 97 (109)
.+.+--|.|..+|.++ |++. ....+++||.++++...+|- ...+|-+|-++.|-=-|+-..+=.++.|
T Consensus 409 v~~VYqvawsaDsRLl--VS~S-----kDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~l 477 (480)
T KOG0271|consen 409 VAAVYQVAWSADSRLL--VSGS-----KDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRL 477 (480)
T ss_pred cceeEEEEeccCccEE--EEcC-----CCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEe
Confidence 4677778999999886 4444 34689999999999998887 7889999999998777777655554443
No 157
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=50.17 E-value=59 Score=25.52 Aligned_cols=45 Identities=9% Similarity=0.169 Sum_probs=27.7
Q ss_pred EEEEEcCCccEEEEEcCCCCCCC-----CCceEEEEeCCC-CcEEEEEEccC
Q psy3712 27 GHVEMLFRCNYLALVGGGTHPKY-----PNNRVMIWDDLK-KQVVICLEFNA 72 (109)
Q Consensus 27 ~~veml~~tn~ialVg~g~~p~~-----~~n~v~IwDd~~-~~~i~el~f~s 72 (109)
.++.+ ..-..+|++|+|-++.- ....|.|.|.++ ++.+.+++.+.
T Consensus 152 ~I~~~-~~g~w~~i~g~Gy~~~~~~~~~~~~~lyi~d~~t~G~l~~~i~~~~ 202 (335)
T PF05567_consen 152 QIAKV-KNGKWVVIFGSGYNSDDVDSSSGGAALYILDADTTGALIKKIDVPG 202 (335)
T ss_dssp EEEEE-TTSSEEEEEE--BS-TT-------EEEEEEETTT---EEEEEEE--
T ss_pred EEEEc-cCCcEEEEEccCCCCCcccccCCCcEEEEEECCCCCceEEEEecCC
Confidence 34444 45578999999976544 457899999999 99999988755
No 158
>KOG0296|consensus
Probab=48.98 E-value=1.5e+02 Score=24.29 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=53.6
Q ss_pred eEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccC-ceeEEEecCCE
Q psy3712 5 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA-PVKGVRLRRDK 83 (109)
Q Consensus 5 f~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s-~V~~V~l~r~~ 83 (109)
..||+..-.+.+...+ ...+|.-+.-+. |-+++--. ++-+|.+||.++|+...++.=.. +|+..-++++.
T Consensus 310 i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c-------~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~ 380 (399)
T KOG0296|consen 310 IAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTAC-------ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQK 380 (399)
T ss_pred EEEEecccchhheecc-CCCceEEEEEcC-cchheeec-------cCceEEeeeccccceEEEEecCchheeEEEEcCCC
Confidence 4677776665543333 234555556666 45543321 45689999999999998877544 79999888764
Q ss_pred EEEEe---CCeEEEEEcC
Q psy3712 84 IVVVL---EGLIKVYTFI 98 (109)
Q Consensus 84 lvVvl---~~~i~vy~~~ 98 (109)
=.|++ ++.-.||..+
T Consensus 381 ~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 381 RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cEEEEecCCCeEEEEecC
Confidence 33332 2566677654
No 159
>KOG2321|consensus
Probab=48.90 E-value=66 Score=27.93 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=37.9
Q ss_pred CceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeC-CeEEEEEcC
Q psy3712 51 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLE-GLIKVYTFI 98 (109)
Q Consensus 51 ~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~-~~i~vy~~~ 98 (109)
.+.++|||..+++..+.++..+++-.++.=++ .+..+++ .+|+.|=++
T Consensus 293 k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 293 KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 45589999999999999999999988887554 6667776 466666555
No 160
>PF09816 EAF: RNA polymerase II transcription elongation factor; InterPro: IPR019194 This entry represents the N-terminal domain of ELL-associated factor (Eaf) proteins, which act as transcriptional transactivators of ELL and ELL2 RNA Polymerase II (Pol II) transcriptional elongation factors [, , , ]. Eaf proteins form a stable heterodimer complex with ELL proteins to facilitate the binding of RNA polymerase II to activate transcription elongation. ELL and EAF1 are components of Cajal bodies, which have a role in leukemogenesis []. EAF1 also has the capacity to interact with ELL1 and ELL2. The N terminus of approx 120 of EAF1 has a region of high serine, aspartic acid, and glutamic acid residues [, ].
Probab=48.33 E-value=29 Score=22.78 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=26.0
Q ss_pred EEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecC
Q psy3712 38 LALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRR 81 (109)
Q Consensus 38 ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r 81 (109)
+.+-|. ..|.=...+|.|||..++.++.|- ..+.+ +++..|
T Consensus 66 ~~f~G~-~~~~~~~ecVLifD~~~~~f~LEr-l~s~~-~~n~~R 106 (109)
T PF09816_consen 66 YVFKGS-QRPSKEKECVLIFDPETGEFVLER-LSSTI-NLNKTR 106 (109)
T ss_pred EEEEec-cCCCCCcEEEEEEECCCCEEEEEE-cceEE-EEEeec
Confidence 445443 344435789999999999988763 33333 555544
No 161
>KOG4379|consensus
Probab=48.27 E-value=19 Score=30.23 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=31.1
Q ss_pred cEEEEEEccCceeEEEecCCEEEEEeCCeEEEEEcC
Q psy3712 63 QVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFI 98 (109)
Q Consensus 63 ~~i~el~f~s~V~~V~l~r~~lvVvl~~~i~vy~~~ 98 (109)
+-+...+...||++++...++|.|+++..+++-.++
T Consensus 560 q~i~~~e~~DpIlGiq~tn~~lfvlTkk~l~~~~vN 595 (596)
T KOG4379|consen 560 QLITLGEEIDPILGIQTTNNLLFVLTKKELIHLQVN 595 (596)
T ss_pred hhhhhccccCceeeeEeccceEEEeecccEEEEEec
Confidence 456778899999999999999999999999886653
No 162
>KOG0268|consensus
Probab=48.17 E-value=25 Score=28.73 Aligned_cols=58 Identities=9% Similarity=0.118 Sum_probs=41.2
Q ss_pred CccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCCEEEEEeC---CeEEEEEcC
Q psy3712 34 RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLE---GLIKVYTFI 98 (109)
Q Consensus 34 ~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~lvVvl~---~~i~vy~~~ 98 (109)
.||+||-.| +++.+.+||.++++++..+.....=-+|..+.+-...+.. ..+|.|++.
T Consensus 199 ETsILas~~-------sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 199 ETSILASCA-------SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred cchheeeec-------cCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhh
Confidence 577776654 5688999999999999888877777777888765444443 345555544
No 163
>KOG0316|consensus
Probab=46.99 E-value=1.4e+02 Score=23.36 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=57.4
Q ss_pred CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccC-ceeEEEecCCEEEEEe---CCeEEEEEc
Q psy3712 22 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA-PVKGVRLRRDKIVVVL---EGLIKVYTF 97 (109)
Q Consensus 22 ~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s-~V~~V~l~r~~lvVvl---~~~i~vy~~ 97 (109)
..|.+..|.-=-.-|+..-.| +.+.|++||..++.-+.+++=.. +|+++.++-|.--.+. +..|++|+.
T Consensus 16 ~qgaV~avryN~dGnY~ltcG-------sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCG-------SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred cccceEEEEEccCCCEEEEcC-------CCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 467888888888888886666 56899999999999998877544 7999988877544443 367888988
Q ss_pred CCCCEEeE
Q psy3712 98 IQCPQQLH 105 (109)
Q Consensus 98 ~~~~~ll~ 105 (109)
. +=+.++
T Consensus 89 ~-TGkv~R 95 (307)
T KOG0316|consen 89 N-TGKVDR 95 (307)
T ss_pred c-cCeeee
Confidence 7 445444
No 164
>KOG0639|consensus
Probab=46.80 E-value=97 Score=26.65 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=51.9
Q ss_pred cCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCC---CcEEEEEEccC---ceeEEEecCC--EEEEE-eCCe
Q psy3712 21 FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK---KQVVICLEFNA---PVKGVRLRRD--KIVVV-LEGL 91 (109)
Q Consensus 21 ~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~---~~~i~el~f~s---~V~~V~l~r~--~lvVv-l~~~ 91 (109)
+..|.+.++....+.+--++.|| ..+|+|||... +..+..|.+-. =|+..+|..| -|+|- -...
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-------kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeast 488 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-------KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAST 488 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-------CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccce
Confidence 44688888887777777777775 37899999874 45777887753 3888888765 23332 3378
Q ss_pred EEEEEcCCC
Q psy3712 92 IKVYTFIQC 100 (109)
Q Consensus 92 i~vy~~~~~ 100 (109)
+.||++..+
T Consensus 489 lsiWDLAap 497 (705)
T KOG0639|consen 489 LSIWDLAAP 497 (705)
T ss_pred eeeeeccCC
Confidence 999999843
No 165
>KOG0288|consensus
Probab=46.10 E-value=1.7e+02 Score=24.29 Aligned_cols=76 Identities=13% Similarity=0.154 Sum_probs=49.5
Q ss_pred EEcCCccEEEEEcCCCC--CCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCCEEEEEe---CCeEEEEEcCCCCEEe
Q psy3712 30 EMLFRCNYLALVGGGTH--PKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQL 104 (109)
Q Consensus 30 eml~~tn~ialVg~g~~--p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~lvVvl---~~~i~vy~~~~~~~ll 104 (109)
+.|+-++...+|-++.. ...-..||+.||-+......++.....|.++-++.++.=|.. +|.+.++++. +.+-.
T Consensus 298 t~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlR-t~eI~ 376 (459)
T KOG0288|consen 298 TVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLR-TKEIR 376 (459)
T ss_pred cccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecc-cccEE
Confidence 45555555544442211 112345699999999999999999999999888887654443 4778888877 34433
Q ss_pred EE
Q psy3712 105 HI 106 (109)
Q Consensus 105 ~~ 106 (109)
++
T Consensus 377 ~~ 378 (459)
T KOG0288|consen 377 QT 378 (459)
T ss_pred EE
Confidence 33
No 166
>KOG0283|consensus
Probab=45.42 E-value=1.1e+02 Score=27.10 Aligned_cols=54 Identities=17% Similarity=0.264 Sum_probs=44.6
Q ss_pred ceEEEEeCCCCcEEEEEEccCceeEEEecCC---EEEEEeCCeEEEEEcCCCCEEeEE
Q psy3712 52 NRVMIWDDLKKQVVICLEFNAPVKGVRLRRD---KIVVVLEGLIKVYTFIQCPQQLHI 106 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~---~lvVvl~~~i~vy~~~~~~~ll~~ 106 (109)
-|++||+-...+.+..-+.+.-|.+|.+.+| -+|=.....+++|+..+ .++..+
T Consensus 432 ~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~-lk~~~~ 488 (712)
T KOG0283|consen 432 GKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG-LKLVSD 488 (712)
T ss_pred cceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccC-CeEEEe
Confidence 4799999999999999999999999999987 34445668999999984 665443
No 167
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=45.07 E-value=2e+02 Score=24.69 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=50.1
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC-EEEEEeCCeEE--EEEcC-
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD-KIVVVLEGLIK--VYTFI- 98 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~-~lvVvl~~~i~--vy~~~- 98 (109)
.|++.........+=+ ++|. ..-.++-|||-.+++...-..=-+.|-+|+++++ +.+|+..++.. ++++.
T Consensus 359 ~~~VrY~r~~~~~e~~-vigt-----~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 359 KGGVRYRRIQVDPEGD-VIGT-----NDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred CCceEEEEEccCCcce-EEec-----cCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 5677777777777722 2332 1345799999999886554445568999999999 66666666544 55555
Q ss_pred CCCEEe
Q psy3712 99 QCPQQL 104 (109)
Q Consensus 99 ~~~~ll 104 (109)
.+++++
T Consensus 433 gnv~~i 438 (668)
T COG4946 433 GNVRLI 438 (668)
T ss_pred CCeeEe
Confidence 234443
No 168
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=44.51 E-value=28 Score=22.51 Aligned_cols=19 Identities=5% Similarity=0.539 Sum_probs=15.7
Q ss_pred ceEEEEeCCCCcEEEEEEc
Q psy3712 52 NRVMIWDDLKKQVVICLEF 70 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f 70 (109)
.|+++|+.++-..|+.++.
T Consensus 83 ~klcvwnnktp~siaai~m 101 (102)
T PF01376_consen 83 SKLCVWNNKTPNSIAAISM 101 (102)
T ss_dssp EEEEEETTSSSEEEEEEEE
T ss_pred hheeeecCCCcchhheeec
Confidence 3599999999988887764
No 169
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=44.31 E-value=57 Score=20.17 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=12.9
Q ss_pred CCCCCceEEEEeCCCCcEEEEEEc
Q psy3712 47 PKYPNNRVMIWDDLKKQVVICLEF 70 (109)
Q Consensus 47 p~~~~n~v~IwDd~~~~~i~el~f 70 (109)
|+=+|.++++|-|++|++-.|=+|
T Consensus 5 ~~p~~~~~RtWtD~tG~f~VeA~f 28 (70)
T PF03983_consen 5 SKPDPSKTRTWTDRTGKFKVEAEF 28 (70)
T ss_dssp -------SEEEEBSSS--EEEEEE
T ss_pred CCCCCCcceEEEeCCCCEEEEEEE
Confidence 444678899999999997776665
No 170
>KOG0771|consensus
Probab=44.29 E-value=84 Score=25.77 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=49.6
Q ss_pred EEEEEcCCccEEEEEcCCCCCCCCCceEEEEe-CCCCcEEEEEEccCceeEEEecCCE--EEEEeCCeEEEEEcCCC
Q psy3712 27 GHVEMLFRCNYLALVGGGTHPKYPNNRVMIWD-DLKKQVVICLEFNAPVKGVRLRRDK--IVVVLEGLIKVYTFIQC 100 (109)
Q Consensus 27 ~~veml~~tn~ialVg~g~~p~~~~n~v~IwD-d~~~~~i~el~f~s~V~~V~l~r~~--lvVvl~~~i~vy~~~~~ 100 (109)
..+..-++-+.+|..| ..-+++||| ..-....-|.+-..+|.++.++.|- |+=+..++.+||+..+.
T Consensus 148 k~vaf~~~gs~latgg-------~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG-------TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeecc-------ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccC
Confidence 4555555556666655 346899999 6666666788889999999999985 44455689999998753
No 171
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=44.21 E-value=98 Score=23.44 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCCCCCceEEEEeCCCCcEEEEE-EccCceeEEEecCCEEEEEeCCeEEEE
Q psy3712 37 YLALVGGGTHPKYPNNRVMIWDDLKKQVVICL-EFNAPVKGVRLRRDKIVVVLEGLIKVY 95 (109)
Q Consensus 37 ~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el-~f~s~V~~V~l~r~~lvVvl~~~i~vy 95 (109)
.|-++||..+.. ..+.+..||.++++=. ++ .++.+- +....+++++++|||+
T Consensus 125 ~iYv~GG~~~~~-~~~~v~~yd~~~~~W~-~~~~~p~~~-----r~~~~~~~~~~~iYv~ 177 (323)
T TIGR03548 125 TLYVGGGNRNGK-PSNKSYLFNLETQEWF-ELPDFPGEP-----RVQPVCVKLQNELYVF 177 (323)
T ss_pred EEEEEeCcCCCc-cCceEEEEcCCCCCee-ECCCCCCCC-----CCcceEEEECCEEEEE
Confidence 344456543332 3588999999877532 22 243221 2233445556665554
No 172
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=44.09 E-value=1.2e+02 Score=25.42 Aligned_cols=68 Identities=13% Similarity=0.218 Sum_probs=55.0
Q ss_pred EEEEcCCccEEEEEcCCCC------------------CCCCCceEEEEeCC---CCcEEEEEEccCceeEEEecCCEEEE
Q psy3712 28 HVEMLFRCNYLALVGGGTH------------------PKYPNNRVMIWDDL---KKQVVICLEFNAPVKGVRLRRDKIVV 86 (109)
Q Consensus 28 ~veml~~tn~ialVg~g~~------------------p~~~~n~v~IwDd~---~~~~i~el~f~s~V~~V~l~r~~lvV 86 (109)
.-||+-.-+.++++|.+.. +..+..++.+||.. +-+.+.+++++....+-|+..+.+-+
T Consensus 56 ~~eLyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~vYDIsD~~~P~~~~~~~~~G~yvsSR~ig~~vy~ 135 (521)
T PF09826_consen 56 PQELYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYKSSTKITVYDISDPSNPKLLREIEIEGSYVSSRKIGDYVYL 135 (521)
T ss_pred hhheEEcCCEEEEEEeccccccccccccccccccccccCCceeEEEEEECCCCCCceEEEEEEeeeEEEeEEEECCEEEE
Confidence 6778878888888875432 22346779999854 44678899999999999999999999
Q ss_pred EeCCeEEEE
Q psy3712 87 VLEGLIKVY 95 (109)
Q Consensus 87 vl~~~i~vy 95 (109)
+....+.++
T Consensus 136 Vt~~~~~~~ 144 (521)
T PF09826_consen 136 VTNSYPNYY 144 (521)
T ss_pred EEecCCccc
Confidence 999999888
No 173
>KOG0321|consensus
Probab=42.87 E-value=79 Score=27.65 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=42.1
Q ss_pred EEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEE------EEEEccCc------eeEEEecC--CEE-EEEeCCeEEE
Q psy3712 30 EMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVV------ICLEFNAP------VKGVRLRR--DKI-VVVLEGLIKV 94 (109)
Q Consensus 30 eml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i------~el~f~s~------V~~V~l~r--~~l-vVvl~~~i~v 94 (109)
-...+-+.||--|++. -.+++||-+++... ....|+++ +.++-+.+ .++ +=+.+++||.
T Consensus 224 v~fkDe~tlaSaga~D------~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ 297 (720)
T KOG0321|consen 224 VLFKDESTLASAGAAD------STIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYF 297 (720)
T ss_pred EEEeccceeeeccCCC------cceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEE
Confidence 3344556666666533 56899999876544 45566665 55666665 444 4567899999
Q ss_pred EEcC
Q psy3712 95 YTFI 98 (109)
Q Consensus 95 y~~~ 98 (109)
|++.
T Consensus 298 ynm~ 301 (720)
T KOG0321|consen 298 YNMR 301 (720)
T ss_pred Eecc
Confidence 9987
No 174
>smart00612 Kelch Kelch domain.
Probab=42.53 E-value=37 Score=17.37 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=15.9
Q ss_pred EEcCCCCCCCCCceEEEEeCCCCcE
Q psy3712 40 LVGGGTHPKYPNNRVMIWDDLKKQV 64 (109)
Q Consensus 40 lVg~g~~p~~~~n~v~IwDd~~~~~ 64 (109)
++||... .-+.+.+.+||..+++=
T Consensus 4 v~GG~~~-~~~~~~v~~yd~~~~~W 27 (47)
T smart00612 4 VVGGFDG-GQRLKSVEVYDPETNKW 27 (47)
T ss_pred EEeCCCC-CceeeeEEEECCCCCeE
Confidence 4555432 33467899999988763
No 175
>KOG0647|consensus
Probab=42.36 E-value=1.8e+02 Score=23.35 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=55.5
Q ss_pred CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCCEE--EEEeC---CeEEEEE
Q psy3712 22 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKI--VVVLE---GLIKVYT 96 (109)
Q Consensus 22 ~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~l--vVvl~---~~i~vy~ 96 (109)
..|++--+.---+.+.++. |+ +.+.+++||-.+++..--=.-..+|+.++.=.... .+++. ..+..|+
T Consensus 71 ~~~PvL~v~WsddgskVf~-g~------~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 71 HDGPVLDVCWSDDGSKVFS-GG------CDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred cCCCeEEEEEccCCceEEe-ec------cCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 3788888888888877754 43 45679999999998665555577899999888877 55554 4677777
Q ss_pred cCCCCEEeEE
Q psy3712 97 FIQCPQQLHI 106 (109)
Q Consensus 97 ~~~~~~ll~~ 106 (109)
.. .+..+++
T Consensus 144 ~R-~~~pv~t 152 (347)
T KOG0647|consen 144 TR-SSNPVAT 152 (347)
T ss_pred cC-CCCeeee
Confidence 76 3455554
No 176
>PF14762 HPS3_Mid: Hermansky-Pudlak syndrome 3, middle region
Probab=42.29 E-value=1.3e+02 Score=24.47 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=42.5
Q ss_pred CceEEEEeCCCC-cEEEEEEccCceeEEEecCCEEEEEeCCeEEEEEcC
Q psy3712 51 NNRVMIWDDLKK-QVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFI 98 (109)
Q Consensus 51 ~n~v~IwDd~~~-~~i~el~f~s~V~~V~l~r~~lvVvl~~~i~vy~~~ 98 (109)
|+.=.+||-.++ +.++.+.|++++..+.++..+|-+++.+.+.=|++.
T Consensus 100 ~~~GyLY~i~~~~~lls~Y~yt~~~~~~~l~~~fLhaiT~~gLet~TlR 148 (374)
T PF14762_consen 100 PHQGYLYNISKPVELLSTYQYTAPVQQVVLTDQFLHAITSEGLETYTLR 148 (374)
T ss_pred CcceEEEEeeccceEEEEEecCccceEEEeecceeeeeeccccceEEEe
Confidence 344578998877 788999999999999999999999999999988876
No 177
>KOG1517|consensus
Probab=42.18 E-value=80 Score=29.47 Aligned_cols=65 Identities=26% Similarity=0.387 Sum_probs=44.0
Q ss_pred EEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCc--eeEEEec---CCEEEEEe-CCeEEEEEcC
Q psy3712 27 GHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAP--VKGVRLR---RDKIVVVL-EGLIKVYTFI 98 (109)
Q Consensus 27 ~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~--V~~V~l~---r~~lvVvl-~~~i~vy~~~ 98 (109)
.+++-...+..+ +++|+ -+.++|||..+.+....+-+.+. |.++--+ -+.+++-. +.++++|+-.
T Consensus 1169 ~v~dWqQ~~G~L-l~tGd------~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R 1239 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHL-LVTGD------VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRR 1239 (1387)
T ss_pred eeeehhhhCCeE-EecCC------eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecc
Confidence 445555666666 45554 37899999999999999888764 4443322 23455544 4799999987
No 178
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=41.95 E-value=14 Score=19.99 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=16.3
Q ss_pred cEEEEEcCCCCCCCCCceEEEEeCCCCcE
Q psy3712 36 NYLALVGGGTHPKYPNNRVMIWDDLKKQV 64 (109)
Q Consensus 36 n~ialVg~g~~p~~~~n~v~IwDd~~~~~ 64 (109)
+.+.+.||-....-.-+.+.+||.++++-
T Consensus 13 ~~i~v~GG~~~~~~~~~d~~~~d~~~~~W 41 (49)
T PF13418_consen 13 NSIYVFGGRDSSGSPLNDLWIFDIETNTW 41 (49)
T ss_dssp TEEEEE--EEE-TEE---EEEEETTTTEE
T ss_pred CeEEEECCCCCCCcccCCEEEEECCCCEE
Confidence 56767776554434667899999988763
No 179
>KOG1645|consensus
Probab=41.74 E-value=1.3e+02 Score=25.00 Aligned_cols=50 Identities=24% Similarity=0.195 Sum_probs=41.0
Q ss_pred CceEEEEeCCCCcEEEEEEccCceeEEEecCC---EEEEEeC-CeEEEEEcCCC
Q psy3712 51 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD---KIVVVLE-GLIKVYTFIQC 100 (109)
Q Consensus 51 ~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~---~lvVvl~-~~i~vy~~~~~ 100 (109)
.|++.|.|-.+...+....-+.++-+..+.+| .|-.-+. ..|+||++.++
T Consensus 215 ~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 215 GNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred CceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 48999999999999998888999999988776 3444444 69999999853
No 180
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=40.93 E-value=23 Score=32.28 Aligned_cols=49 Identities=16% Similarity=0.332 Sum_probs=39.3
Q ss_pred CCceEEEEeCCCCcEEEEE-EccCceeEEEecCC-----------EEEEEeCCeEEEEEcC
Q psy3712 50 PNNRVMIWDDLKKQVVICL-EFNAPVKGVRLRRD-----------KIVVVLEGLIKVYTFI 98 (109)
Q Consensus 50 ~~n~v~IwDd~~~~~i~el-~f~s~V~~V~l~r~-----------~lvVvl~~~i~vy~~~ 98 (109)
..|++++||-..++.--++ +|...|+.|++=|- .|+|+++..+++|.++
T Consensus 100 ~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs 160 (1263)
T COG5308 100 NDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVS 160 (1263)
T ss_pred cCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEE
Confidence 3599999999977666554 47889999998764 5888999999998876
No 181
>KOG0283|consensus
Probab=40.79 E-value=89 Score=27.55 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=42.6
Q ss_pred CceEEEEeCCCCcEEEEEEccCceeEEEecC--C--EEEEEeCCeEEEEEcCC
Q psy3712 51 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRR--D--KIVVVLEGLIKVYTFIQ 99 (109)
Q Consensus 51 ~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r--~--~lvVvl~~~i~vy~~~~ 99 (109)
.+.|++|+...+.-++-+.-+.=|..|.+++ | +|-=.|+.+++||++++
T Consensus 389 DKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d 441 (712)
T KOG0283|consen 389 DKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD 441 (712)
T ss_pred cccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCc
Confidence 4679999999999999999999999999985 3 44457999999999986
No 182
>PHA02754 hypothetical protein; Provisional
Probab=40.20 E-value=72 Score=19.30 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=20.3
Q ss_pred CceeEEEecCCEEEEEeCCeEEEE
Q psy3712 72 APVKGVRLRRDKIVVVLEGLIKVY 95 (109)
Q Consensus 72 s~V~~V~l~r~~lvVvl~~~i~vy 95 (109)
..|.+|-.+.|.+||+..+-|.|-
T Consensus 35 ~RIkai~~SGdkIVVi~aD~I~i~ 58 (67)
T PHA02754 35 DRIKAITTSGDKIVVITADAIKIE 58 (67)
T ss_pred EEEEEEEecCCEEEEEEcceEEEE
Confidence 468899999999999999988763
No 183
>PRK00178 tolB translocation protein TolB; Provisional
Probab=39.66 E-value=1.9e+02 Score=22.76 Aligned_cols=65 Identities=18% Similarity=0.099 Sum_probs=39.9
Q ss_pred CCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeC----CeEEEEEcC
Q psy3712 33 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLE----GLIKVYTFI 98 (109)
Q Consensus 33 ~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~----~~i~vy~~~ 98 (109)
|+|. +|+|.......-....+.++|...+....-.....++....+++| +|+.+.. ..|+++++.
T Consensus 161 f~~~-ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~ 231 (430)
T PRK00178 161 FSTR-ILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD 231 (430)
T ss_pred ceee-EEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECC
Confidence 5555 556653222211234688999876554433455678898898754 5665543 368999986
No 184
>KOG0307|consensus
Probab=39.59 E-value=54 Score=30.06 Aligned_cols=69 Identities=19% Similarity=0.272 Sum_probs=49.2
Q ss_pred CEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCc-eeEEEecCCEE----EEEeCCeEEEEEcCC
Q psy3712 25 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAP-VKGVRLRRDKI----VVVLEGLIKVYTFIQ 99 (109)
Q Consensus 25 ~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~-V~~V~l~r~~l----vVvl~~~i~vy~~~~ 99 (109)
|+--++--..-+-+++..| ..|++++||..+++.+.|+--... +.+|+..++.= +..++.+|.||++..
T Consensus 255 GilslsWc~~D~~lllSsg------kD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSG------KDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred ceeeeccCCCCchhhhccc------CCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 4444444444444444433 358899999999999998876544 88999987643 445789999999974
No 185
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=39.53 E-value=1.8e+02 Score=22.49 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=52.0
Q ss_pred EEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCce--eEEEecCCEEEEEe--CCeEEEEEcCCCCEEeEEec
Q psy3712 40 LVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPV--KGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHIYL 108 (109)
Q Consensus 40 lVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V--~~V~l~r~~lvVvl--~~~i~vy~~~~~~~ll~~~~ 108 (109)
+.|.|. |.+..|..+|..+++...+..+|... -++-+-.|+|...+ ++..++|+.. +.+++.++=
T Consensus 59 yESTG~---yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~-tl~~~~~~~ 127 (264)
T PF05096_consen 59 YESTGL---YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPN-TLKKIGTFP 127 (264)
T ss_dssp EEEECS---TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETT-TTEEEEEEE
T ss_pred EEeCCC---CCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccc-cceEEEEEe
Confidence 556554 56789999999999999999999864 56777788888887 5899999998 699988764
No 186
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=39.26 E-value=2.9e+02 Score=24.97 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=55.2
Q ss_pred eEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEcc-----CceeEEEe
Q psy3712 5 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN-----APVKGVRL 79 (109)
Q Consensus 5 f~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~-----s~V~~V~l 79 (109)
+|||+-+ ..+...-+.-+|=-+...=-.+-|+||-+-. ++.+.-+++=.++|-.-.|++.+ ..|.++..
T Consensus 239 iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-----~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~W 312 (928)
T PF04762_consen 239 IRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-----LPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAW 312 (928)
T ss_pred EEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-----cCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEE
Confidence 6677665 2222221211222222344567788888763 23334455556777777777776 36888887
Q ss_pred cCC--EEEEEeCCeEEEEEcCC
Q psy3712 80 RRD--KIVVVLEGLIKVYTFIQ 99 (109)
Q Consensus 80 ~r~--~lvVvl~~~i~vy~~~~ 99 (109)
+.| -|+|.++++|.+|..++
T Consensus 313 n~ds~iLAv~~~~~vqLWt~~N 334 (928)
T PF04762_consen 313 NSDSEILAVWLEDRVQLWTRSN 334 (928)
T ss_pred CCCCCEEEEEecCCceEEEeeC
Confidence 765 78888899999999884
No 187
>PHA03098 kelch-like protein; Provisional
Probab=39.12 E-value=1.2e+02 Score=24.78 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCCCCCceEEEEeCCCCcE
Q psy3712 36 NYLALVGGGTHPKYPNNRVMIWDDLKKQV 64 (109)
Q Consensus 36 n~ialVg~g~~p~~~~n~v~IwDd~~~~~ 64 (109)
|.+-++||......+.+.+..||..+++-
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSW 323 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCee
Confidence 44556676544444557899999988765
No 188
>KOG0275|consensus
Probab=38.61 E-value=1.1e+02 Score=25.01 Aligned_cols=51 Identities=14% Similarity=0.288 Sum_probs=36.3
Q ss_pred CCCceEEEEeCCCCcEEEEEEccC---ceeEEEe---cCCEEEEEeC-CeEEEEEcCC
Q psy3712 49 YPNNRVMIWDDLKKQVVICLEFNA---PVKGVRL---RRDKIVVVLE-GLIKVYTFIQ 99 (109)
Q Consensus 49 ~~~n~v~IwDd~~~~~i~el~f~s---~V~~V~l---~r~~lvVvl~-~~i~vy~~~~ 99 (109)
.+.-.|++||-++......+.-++ +|.+|-+ +.++++|+-. +.++|-++..
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 355679999999887665444333 5666655 5678888877 8899988873
No 189
>PF08576 DUF1764: Eukaryotic protein of unknown function (DUF1764); InterPro: IPR013885 This entry consists of eukaryotic proteins of unknown function, including many hypothetical proteins.
Probab=38.58 E-value=12 Score=24.41 Aligned_cols=14 Identities=43% Similarity=0.710 Sum_probs=11.5
Q ss_pred CCcceEEEeecCCc
Q psy3712 1 MEDGFRIYNCDPLK 14 (109)
Q Consensus 1 ~~~Gf~Iy~~~P~~ 14 (109)
|++||+||..+-|.
T Consensus 69 teDGl~IYt~eEL~ 82 (102)
T PF08576_consen 69 TEDGLPIYTEEELG 82 (102)
T ss_pred cCCCceEecHHHhC
Confidence 68999999887665
No 190
>KOG1963|consensus
Probab=38.17 E-value=57 Score=29.01 Aligned_cols=55 Identities=24% Similarity=0.403 Sum_probs=44.5
Q ss_pred ceEEEEeCCCCcEEEEEEccC-ceeEEEecCCE------EEEEeCCeEEEEEcCCCCEEeEEe
Q psy3712 52 NRVMIWDDLKKQVVICLEFNA-PVKGVRLRRDK------IVVVLEGLIKVYTFIQCPQQLHIY 107 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f~s-~V~~V~l~r~~------lvVvl~~~i~vy~~~~~~~ll~~~ 107 (109)
|.|.||-..++..+.-+++.. +++.+-+.++- ++..++..|.+++.. .++++.++
T Consensus 37 ~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~-~~~Llkt~ 98 (792)
T KOG1963|consen 37 NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS-DGELLKTF 98 (792)
T ss_pred CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC-CcEEEEEE
Confidence 789999999999888777754 67777766553 377788999999999 58999886
No 191
>KOG0277|consensus
Probab=37.99 E-value=2e+02 Score=22.68 Aligned_cols=49 Identities=10% Similarity=0.242 Sum_probs=32.8
Q ss_pred ceEEEEeCC-CCcEEEEEEccC-ceeEEEecC-CEEEEEe---CCeEEEEEcCCCCE
Q psy3712 52 NRVMIWDDL-KKQVVICLEFNA-PVKGVRLRR-DKIVVVL---EGLIKVYTFIQCPQ 102 (109)
Q Consensus 52 n~v~IwDd~-~~~~i~el~f~s-~V~~V~l~r-~~lvVvl---~~~i~vy~~~~~~~ 102 (109)
-.+.|||.+ -++.+. |+-++ +|+.--.+| ++=++++ ++.|++|++. +++
T Consensus 170 ~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir-~~r 224 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIR-NLR 224 (311)
T ss_pred ceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehh-hcc
Confidence 458999977 456655 66655 788877665 2333443 3789999998 344
No 192
>KOG0293|consensus
Probab=37.58 E-value=45 Score=27.82 Aligned_cols=50 Identities=16% Similarity=0.356 Sum_probs=34.8
Q ss_pred CCceEEEEeCCCCcEEEEEEccCc-eeEEEec---CCEEEEEeC-CeEEEEEcCC
Q psy3712 50 PNNRVMIWDDLKKQVVICLEFNAP-VKGVRLR---RDKIVVVLE-GLIKVYTFIQ 99 (109)
Q Consensus 50 ~~n~v~IwDd~~~~~i~el~f~s~-V~~V~l~---r~~lvVvl~-~~i~vy~~~~ 99 (109)
-..+|.||+-.+++.+++++=.+. |--|--+ +.+++=+-+ +.|+||...+
T Consensus 460 ED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 460 EDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 357899999999999999987664 3233333 345555554 6888887764
No 193
>KOG0313|consensus
Probab=37.08 E-value=1.6e+02 Score=24.23 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=49.4
Q ss_pred CCCEEEEEEcCCccEE-----------EEEcCCCCCCCCCceEEEEeCCCCc-EEEEEEc-cCceeEEEecCCEEEEEe-
Q psy3712 23 DGGLGHVEMLFRCNYL-----------ALVGGGTHPKYPNNRVMIWDDLKKQ-VVICLEF-NAPVKGVRLRRDKIVVVL- 88 (109)
Q Consensus 23 ~g~v~~veml~~tn~i-----------alVg~g~~p~~~~n~v~IwDd~~~~-~i~el~f-~s~V~~V~l~r~~lvVvl- 88 (109)
.|++---...+.+|++ -||++. -.|++++||.+.-+ ++..|.= ...|+++..+..-++|.-
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S-----~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGG 407 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS-----YDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGG 407 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCCceEEEEEe-----cCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEecc
Confidence 3444444555666654 344433 35889999999877 6666654 557999999999888864
Q ss_pred -CCeEEEEEcC
Q psy3712 89 -EGLIKVYTFI 98 (109)
Q Consensus 89 -~~~i~vy~~~ 98 (109)
+++++||.-.
T Consensus 408 aD~~l~i~~~~ 418 (423)
T KOG0313|consen 408 ADNKLRIFKGS 418 (423)
T ss_pred CcceEEEeccc
Confidence 5888888755
No 194
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=36.77 E-value=1.2e+02 Score=19.89 Aligned_cols=57 Identities=11% Similarity=-0.037 Sum_probs=42.7
Q ss_pred CCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCCEEEEEeCCeEEEEEc
Q psy3712 33 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTF 97 (109)
Q Consensus 33 ~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~lvVvl~~~i~vy~~ 97 (109)
.+...+.+-.+ -++...|..++..-+||..+..+.--..+.+.+.|...++.|.+.=
T Consensus 27 ~kkR~liLTd~--------PrL~Yvdp~~~~~KGeI~~~~~l~v~~k~~~~F~I~tp~RtY~l~d 83 (104)
T PF14593_consen 27 AKKRQLILTDG--------PRLFYVDPKKMVLKGEIPWSKELSVEVKSFKTFFIHTPKRTYYLED 83 (104)
T ss_dssp EEEEEEEEETT--------TEEEEEETTTTEEEEEE--STT-EEEECSSSEEEEEETTEEEEEE-
T ss_pred EEEEEEEEccC--------CEEEEEECCCCeECcEEecCCceEEEEccCCEEEEECCCcEEEEEC
Confidence 35555666543 2688899999999999999999888888989999999998887653
No 195
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=36.29 E-value=1.1e+02 Score=26.77 Aligned_cols=34 Identities=35% Similarity=0.597 Sum_probs=29.5
Q ss_pred EEEEEEccCceeEEEec--CCEEEEEeC-CeEEEEEc
Q psy3712 64 VVICLEFNAPVKGVRLR--RDKIVVVLE-GLIKVYTF 97 (109)
Q Consensus 64 ~i~el~f~s~V~~V~l~--r~~lvVvl~-~~i~vy~~ 97 (109)
...|+...+.|.+|++. .+.++|+++ ..|.+|++
T Consensus 122 ~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~ 158 (670)
T PF10395_consen 122 NEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDF 158 (670)
T ss_pred ceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEec
Confidence 45688899999999998 667888888 79999999
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=36.08 E-value=1.9e+02 Score=21.71 Aligned_cols=91 Identities=10% Similarity=0.032 Sum_probs=52.2
Q ss_pred CcceEEEeecC-CceeeeeecC-CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCC-CCc--EEEEEEccCceeE
Q psy3712 2 EDGFRIYNCDP-LKEKERQDFT-DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL-KKQ--VVICLEFNAPVKG 76 (109)
Q Consensus 2 ~~Gf~Iy~~~P-~~~~~~~~~~-~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~-~~~--~i~el~f~s~V~~ 76 (109)
+.|..+|+++. -.....+.++ .++...+..=...++++. |+. +++.+.+||.. +++ .+.++..+.....
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv-~~~-----~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYV-GVR-----PEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEE-EEC-----CCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 45678888853 2211112221 233333333344555544 332 35788999865 333 3445556656678
Q ss_pred EEecCC--EEEEEe--CCeEEEEEcC
Q psy3712 77 VRLRRD--KIVVVL--EGLIKVYTFI 98 (109)
Q Consensus 77 V~l~r~--~lvVvl--~~~i~vy~~~ 98 (109)
+-++++ ++.++- .++|.+|++.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEEC
Confidence 888844 677776 5899999986
No 197
>KOG4378|consensus
Probab=36.08 E-value=1.2e+02 Score=26.09 Aligned_cols=47 Identities=19% Similarity=0.411 Sum_probs=34.2
Q ss_pred ceEEEEeCCCCcEEEEE--EccCceeEEEecCC--EEE--EEeCCeEEEEEcC
Q psy3712 52 NRVMIWDDLKKQVVICL--EFNAPVKGVRLRRD--KIV--VVLEGLIKVYTFI 98 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el--~f~s~V~~V~l~r~--~lv--Vvl~~~i~vy~~~ 98 (109)
-.|.+||.....++... .-..|-.+|.++.. .|+ |-++.+|++|+..
T Consensus 187 G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred CeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 46999999988887532 22457788888764 344 4467999999998
No 198
>PRK04922 tolB translocation protein TolB; Provisional
Probab=35.60 E-value=2.3e+02 Score=22.55 Aligned_cols=70 Identities=13% Similarity=0.013 Sum_probs=43.9
Q ss_pred EEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecC--CEEEEEeC----CeEEEEEcCC
Q psy3712 26 LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRR--DKIVVVLE----GLIKVYTFIQ 99 (109)
Q Consensus 26 v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r--~~lvVvl~----~~i~vy~~~~ 99 (109)
+.-...-.+.+.+|++.... ....|.+||..+++...--.++....+..++. +++++.+. ..|+++++..
T Consensus 206 v~~p~wSpDg~~la~~s~~~----~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~ 281 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFER----GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS 281 (433)
T ss_pred cccccCCCCCCEEEEEecCC----CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC
Confidence 33334445667777775322 13468999998887654445666666777774 35666553 2699999863
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=35.55 E-value=2.3e+02 Score=22.55 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=32.2
Q ss_pred ceEEEEeCCCCcEEEEEEc-cCceeEEEecCC--EEEEEeC----CeEEEEEcCC
Q psy3712 52 NRVMIWDDLKKQVVICLEF-NAPVKGVRLRRD--KIVVVLE----GLIKVYTFIQ 99 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f-~s~V~~V~l~r~--~lvVvl~----~~i~vy~~~~ 99 (109)
..+.|||...... ..+.- ..++.++.++.| +|+.+.. ..|+++++..
T Consensus 184 ~~i~i~d~dg~~~-~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t 237 (429)
T PRK01742 184 YEVRVADYDGFNQ-FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS 237 (429)
T ss_pred EEEEEECCCCCCc-eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCC
Confidence 6799999765442 33333 557999999877 6666543 2599999863
No 200
>KOG1063|consensus
Probab=34.68 E-value=2.9e+02 Score=24.52 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=56.0
Q ss_pred CEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccC-ceeEEEecCC---EEEEEeCCeEEEEEcCCC
Q psy3712 25 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA-PVKGVRLRRD---KIVVVLEGLIKVYTFIQC 100 (109)
Q Consensus 25 ~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s-~V~~V~l~r~---~lvVvl~~~i~vy~~~~~ 100 (109)
.+..+..=..-|++|---....+.++ .+++|+..+-+.+.+|.+.| .|..+.+++| .+.|.=++.+.+|+..++
T Consensus 527 Ev~~l~~s~~gnliASaCKS~~~ehA--vI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~ 604 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSSLKEHA--VIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQED 604 (764)
T ss_pred eEEEEEecCCCCEEeehhhhCCccce--EEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecc
Confidence 55666666778888876665555443 58999999988888999988 7999999987 345555677889987643
No 201
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=34.30 E-value=1.9e+02 Score=22.15 Aligned_cols=44 Identities=9% Similarity=0.063 Sum_probs=29.6
Q ss_pred ceEEEEeCCCCcEEEEEEccCc-e-eEEEecCCEEEEEeCC-eEEEE
Q psy3712 52 NRVMIWDDLKKQVVICLEFNAP-V-KGVRLRRDKIVVVLEG-LIKVY 95 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f~s~-V-~~V~l~r~~lvVvl~~-~i~vy 95 (109)
..|.+||..+++.+.+++.+.. + -.--+..++|+|+..+ +++.+
T Consensus 330 G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 330 GYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 4688999999999998887652 2 2223445666666654 66654
No 202
>KOG0293|consensus
Probab=34.05 E-value=2.3e+02 Score=23.83 Aligned_cols=73 Identities=10% Similarity=0.241 Sum_probs=54.8
Q ss_pred EEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEE-eCCeEEEEEcCCCCE
Q psy3712 26 LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVV-LEGLIKVYTFIQCPQ 102 (109)
Q Consensus 26 v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVv-l~~~i~vy~~~~~~~ 102 (109)
+.-+.|=++--.+.+|+ ...+..+||-.+...+.-++-..+|....++++ ...|- ..+.++.|++.+ ++
T Consensus 357 v~dlait~Dgk~vl~v~-------~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e-~~ 428 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVT-------VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEE-NK 428 (519)
T ss_pred eEEEEEcCCCcEEEEEe-------cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecch-hh
Confidence 44566667777777777 345688999988888888889999999999987 33333 448999999984 66
Q ss_pred EeEE
Q psy3712 103 QLHI 106 (109)
Q Consensus 103 ll~~ 106 (109)
++..
T Consensus 429 lv~k 432 (519)
T KOG0293|consen 429 LVRK 432 (519)
T ss_pred HHHH
Confidence 6543
No 203
>KOG0639|consensus
Probab=33.28 E-value=55 Score=28.08 Aligned_cols=84 Identities=15% Similarity=0.249 Sum_probs=55.2
Q ss_pred eEEEeecCCceeeeeecC--CCCEEEEEEc-CCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEE--e
Q psy3712 5 FRIYNCDPLKEKERQDFT--DGGLGHVEML-FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVR--L 79 (109)
Q Consensus 5 f~Iy~~~P~~~~~~~~~~--~g~v~~veml-~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~--l 79 (109)
.+||+.+.-... |+|+ ..|.+.+.+- ..|++. .|| ..|.|+-||-++++...+..|.|.|-.+- =
T Consensus 533 I~vwDLhnq~~V--rqfqGhtDGascIdis~dGtklW--TGG------lDntvRcWDlregrqlqqhdF~SQIfSLg~cP 602 (705)
T KOG0639|consen 533 IAVWDLHNQTLV--RQFQGHTDGASCIDISKDGTKLW--TGG------LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCP 602 (705)
T ss_pred EEEEEcccceee--ecccCCCCCceeEEecCCCceee--cCC------CccceeehhhhhhhhhhhhhhhhhheecccCC
Confidence 456665543332 3442 2355554443 345543 344 46999999999999999999999987664 4
Q ss_pred cCCEEEEEeC-CeEEEEEcC
Q psy3712 80 RRDKIVVVLE-GLIKVYTFI 98 (109)
Q Consensus 80 ~r~~lvVvl~-~~i~vy~~~ 98 (109)
+.|.++|-.+ +.+.|-..+
T Consensus 603 ~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 603 TGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred CccceeeecccCcEEEEecC
Confidence 5678888887 456666555
No 204
>KOG0973|consensus
Probab=32.15 E-value=4e+02 Score=24.44 Aligned_cols=71 Identities=21% Similarity=0.224 Sum_probs=52.0
Q ss_pred CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEc-cCceeEEEecC--CEEEEEeC-CeEEEEEc
Q psy3712 22 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF-NAPVKGVRLRR--DKIVVVLE-GLIKVYTF 97 (109)
Q Consensus 22 ~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f-~s~V~~V~l~r--~~lvVvl~-~~i~vy~~ 97 (109)
+++.|.=++-=....++|-+|- .|.|+|||.++.+.+..+.= .+.|++|-..+ ++++.-.+ ..|.||+.
T Consensus 128 H~~DV~Dv~Wsp~~~~lvS~s~-------DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt 200 (942)
T KOG0973|consen 128 HDSDVLDVNWSPDDSLLVSVSL-------DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRT 200 (942)
T ss_pred CCCccceeccCCCccEEEEecc-------cceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEc
Confidence 3556666666667888888874 58999999999977776655 45799998876 35555555 57889997
Q ss_pred CC
Q psy3712 98 IQ 99 (109)
Q Consensus 98 ~~ 99 (109)
.+
T Consensus 201 ~d 202 (942)
T KOG0973|consen 201 SD 202 (942)
T ss_pred cc
Confidence 64
No 205
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=31.82 E-value=1.8e+02 Score=20.24 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=38.4
Q ss_pred ceEEEEeCCCCcEEEEE-EccC------ceeEEEecCCEEEEEe-CCeEEEEEcCCCCEEeE
Q psy3712 52 NRVMIWDDLKKQVVICL-EFNA------PVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLH 105 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el-~f~s------~V~~V~l~r~~lvVvl-~~~i~vy~~~~~~~ll~ 105 (109)
+.+..+|.++++.+-+. .... ......+..+++++.. ...++.++..+ =+++-
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-G~~~w 146 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKT-GKLLW 146 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTT-TEEEE
T ss_pred eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCC-CcEEE
Confidence 58999999999999884 5442 2334556688999999 79999999874 35443
No 206
>KOG0307|consensus
Probab=31.65 E-value=62 Score=29.71 Aligned_cols=50 Identities=24% Similarity=0.406 Sum_probs=39.3
Q ss_pred CCCceEEEEeCCCCcEEEEEEccCc---eeEEEecCC---EEEEEeCC----eEEEEEcC
Q psy3712 49 YPNNRVMIWDDLKKQVVICLEFNAP---VKGVRLRRD---KIVVVLEG----LIKVYTFI 98 (109)
Q Consensus 49 ~~~n~v~IwDd~~~~~i~el~f~s~---V~~V~l~r~---~lvVvl~~----~i~vy~~~ 98 (109)
.+..+..|||.++++.|.+++..+. +-.+....+ +++++.++ .|-.|++.
T Consensus 181 s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 181 SPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred CCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 3455899999999999999999887 667777776 78888875 46677654
No 207
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=31.19 E-value=2.3e+02 Score=21.27 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=27.3
Q ss_pred CCcEEEEEEccCceeEEEecC-CEEEEEeC-CeEEEEEcC-CCCEEeEEe
Q psy3712 61 KKQVVICLEFNAPVKGVRLRR-DKIVVVLE-GLIKVYTFI-QCPQQLHIY 107 (109)
Q Consensus 61 ~~~~i~el~f~s~V~~V~l~r-~~lvVvl~-~~i~vy~~~-~~~~ll~~~ 107 (109)
.+|.+...+. +-..+.-.+ |.|.|++. .+|.+|++. +..+++++|
T Consensus 9 ~sQ~v~~~~~--EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F 56 (215)
T PF14761_consen 9 GSQNVVPCEQ--EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTF 56 (215)
T ss_pred CCceeecccc--CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEE
Confidence 4444544443 333444445 99977554 899999998 344555554
No 208
>PRK04922 tolB translocation protein TolB; Provisional
Probab=31.14 E-value=2.7e+02 Score=22.10 Aligned_cols=49 Identities=16% Similarity=0.067 Sum_probs=31.4
Q ss_pred CceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeC----CeEEEEEcCC
Q psy3712 51 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLE----GLIKVYTFIQ 99 (109)
Q Consensus 51 ~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~----~~i~vy~~~~ 99 (109)
...|.|||...+....-.....++.+...+.| +|+.+.. ..|+++++..
T Consensus 183 ~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~ 237 (433)
T PRK04922 183 RYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT 237 (433)
T ss_pred eEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC
Confidence 34699999764433322234567888888755 5665542 3599999863
No 209
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=29.20 E-value=87 Score=15.81 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=20.4
Q ss_pred CceEEEEeCCCCcEEEEEEccCceeEEE
Q psy3712 51 NNRVMIWDDLKKQVVICLEFNAPVKGVR 78 (109)
Q Consensus 51 ~n~v~IwDd~~~~~i~el~f~s~V~~V~ 78 (109)
.+.|.++|..+++.+.++.....=.++.
T Consensus 13 ~~~v~~id~~~~~~~~~i~vg~~P~~i~ 40 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIPVGGYPFGVA 40 (42)
T ss_pred CCEEEEEECCCCeEEEEEECCCCCceEE
Confidence 4688889999998888887765444443
No 210
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=28.73 E-value=1.8e+02 Score=21.09 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=26.0
Q ss_pred cCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEE
Q psy3712 32 LFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVIC 67 (109)
Q Consensus 32 l~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~e 67 (109)
+.+++++++|.=+. |. ..+++.|||-++++...+
T Consensus 31 ~~~~~~l~iIDfs~-pS-~~~R~~v~Dl~~~~~l~~ 64 (176)
T PF13645_consen 31 IYNKDILTIIDFSK-PS-GEKRFFVIDLKKGKLLYN 64 (176)
T ss_pred CCCCCeEEEEECCC-CC-CCCeEEEEECCCCEEEEe
Confidence 34788999997543 33 678899999999988753
No 211
>PRK05137 tolB translocation protein TolB; Provisional
Probab=28.70 E-value=3e+02 Score=21.83 Aligned_cols=72 Identities=15% Similarity=0.048 Sum_probs=50.0
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeC----CeEEEEE
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLE----GLIKVYT 96 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~----~~i~vy~ 96 (109)
.+.+.....-.+.+.||++.... ....|.+||..+++...--.++..+.+..++.| +|++... ..|++++
T Consensus 201 ~~~v~~p~wSpDG~~lay~s~~~----g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 201 SSLVLTPRFSPNRQEITYMSYAN----GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred CCCeEeeEECCCCCEEEEEEecC----CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence 45666777777888899986422 125799999988876433346777888888754 5666653 4688888
Q ss_pred cC
Q psy3712 97 FI 98 (109)
Q Consensus 97 ~~ 98 (109)
+.
T Consensus 277 ~~ 278 (435)
T PRK05137 277 LR 278 (435)
T ss_pred CC
Confidence 76
No 212
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=28.45 E-value=64 Score=14.02 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=18.4
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEe
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWD 58 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwD 58 (109)
.+.+..+.+-...++++..+. .+.+.+||
T Consensus 12 ~~~i~~~~~~~~~~~~~~~~~-------d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSPDGKYLASASD-------DGTIKLWD 40 (40)
T ss_pred CCceeEEEECCCCCEEEEecC-------CCeEEEcC
Confidence 446666666666677765542 35688886
No 213
>PF14236 DUF4338: Domain of unknown function (DUF4338)
Probab=28.20 E-value=51 Score=25.88 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=28.4
Q ss_pred ceEEEEeCCCCcEEEEEEccCceeEEEecCCEE
Q psy3712 52 NRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKI 84 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~l 84 (109)
=+-.|||...++.++-+.|.+++.++..+.+.|
T Consensus 85 LRYlV~~~~~~~~iG~l~f~s~a~~l~aRD~~I 117 (296)
T PF14236_consen 85 LRYLVRDENQGKWIGILGFSSPAWKLAARDRWI 117 (296)
T ss_pred eEEEEEeCCCCcEEEEEecccccccCchhhhhc
Confidence 346799999999999999999999998876654
No 214
>KOG0322|consensus
Probab=28.08 E-value=1e+02 Score=24.39 Aligned_cols=27 Identities=33% Similarity=0.673 Sum_probs=19.1
Q ss_pred CccEEEEEcCCCCCCCCCceEEEEeCCCCcEEE
Q psy3712 34 RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVI 66 (109)
Q Consensus 34 ~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~ 66 (109)
.|.+++++| |-+-.|.+||..++..+.
T Consensus 163 ~s~~lllaG------yEsghvv~wd~S~~~~~~ 189 (323)
T KOG0322|consen 163 GSTFLLLAG------YESGHVVIWDLSTGDKII 189 (323)
T ss_pred cceEEEEEe------ccCCeEEEEEccCCceee
Confidence 356666766 456789999999974443
No 215
>KOG0290|consensus
Probab=27.50 E-value=3.2e+02 Score=21.95 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=33.7
Q ss_pred ceEEEEeCCCCcE---EE-EEEccCceeEEEecC---CEEE-EEeCCeEEEEEcCC
Q psy3712 52 NRVMIWDDLKKQV---VI-CLEFNAPVKGVRLRR---DKIV-VVLEGLIKVYTFIQ 99 (109)
Q Consensus 52 n~v~IwDd~~~~~---i~-el~f~s~V~~V~l~r---~~lv-Vvl~~~i~vy~~~~ 99 (109)
....|||-+++.. .. -|.-.++|-+|.+.+ +.++ |-.+.++++|++..
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence 4579999998733 33 344567899998887 2333 34558999999984
No 216
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=27.47 E-value=4e+02 Score=24.78 Aligned_cols=71 Identities=17% Similarity=0.087 Sum_probs=46.5
Q ss_pred EEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCc-eeEEEecCCEE-EEEeCCeEEEEEcC-CCCE
Q psy3712 26 LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAP-VKGVRLRRDKI-VVVLEGLIKVYTFI-QCPQ 102 (109)
Q Consensus 26 v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~-V~~V~l~r~~l-vVvl~~~i~vy~~~-~~~~ 102 (109)
.-.+-|+..-|-++=| .|+-+.+||..-+ ....++|.+. |.++-+..-.+ ||++...|-+|... ++++
T Consensus 592 Tl~~~~fgee~rvVQv--------tp~~l~~yD~~lR-~l~~~~F~~~~V~~~Sv~Dp~ilvv~~~g~i~~f~~~ekn~r 662 (1319)
T COG5161 592 TLLFVEFGEENRVVQV--------TPSYLLRYDQDLR-MLGRVEFASRAVEARSVRDPLILVVRDSGKILTFYDREKNMR 662 (1319)
T ss_pred EEEeeeccCcceEEEe--------cchHhhhhcccce-eeeeEeeceeeeEEEeccCCEEEEEEecCceEEEEehhhhch
Confidence 3344455544544444 5677888987654 4778899888 77777766655 45556899999876 4455
Q ss_pred EeE
Q psy3712 103 QLH 105 (109)
Q Consensus 103 ll~ 105 (109)
++.
T Consensus 663 L~k 665 (1319)
T COG5161 663 LFK 665 (1319)
T ss_pred hcc
Confidence 444
No 217
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=27.03 E-value=2.9e+02 Score=21.21 Aligned_cols=79 Identities=8% Similarity=0.103 Sum_probs=48.7
Q ss_pred CCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCC-CcEEEEEEccCceeEEEecC-----CEEEEEeCCeEEEEEc
Q psy3712 24 GGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK-KQVVICLEFNAPVKGVRLRR-----DKIVVVLEGLIKVYTF 97 (109)
Q Consensus 24 g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~-~~~i~el~f~s~V~~V~l~r-----~~lvVvl~~~i~vy~~ 97 (109)
..+.++-+.++-..=.+|+.+.... ...||++|.--+ .++..=...|+.|....+.. --++|+....|+||.
T Consensus 18 sC~~l~Dl~gDGd~kLvvaD~g~~~-~~~kLKVykGt~l~~E~~L~d~P~ai~sFy~d~~ep~~P~iAVA~G~~vyiYk- 95 (257)
T PF14779_consen 18 SCMALADLQGDGDYKLVVADLGTGD-QNMKLKVYKGTSLISEITLPDLPSAIVSFYMDEHEPRTPAIAVAAGPSVYIYK- 95 (257)
T ss_pred ceeEeeecCCCCeEEEEEEecCCcC-CCceEEEEcCCChhhcccccCCCeEEEEEeccCCCCCCCeEEEEeCCEEEEEe-
Confidence 4555555555555444555543211 345899998543 33444555677777777655 368999999999994
Q ss_pred CCCCEEeEE
Q psy3712 98 IQCPQQLHI 106 (109)
Q Consensus 98 ~~~~~ll~~ 106 (109)
+||..+-
T Consensus 96 --NlkP~yK 102 (257)
T PF14779_consen 96 --NLKPFYK 102 (257)
T ss_pred --cccceee
Confidence 4554443
No 218
>KOG4283|consensus
Probab=27.02 E-value=69 Score=25.74 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=34.1
Q ss_pred CceEEEEeCCCCcEEEEEEccCceeEEEec-----CCEEEEEeC-CeEEEEEcC
Q psy3712 51 NNRVMIWDDLKKQVVICLEFNAPVKGVRLR-----RDKIVVVLE-GLIKVYTFI 98 (109)
Q Consensus 51 ~n~v~IwDd~~~~~i~el~f~s~V~~V~l~-----r~~lvVvl~-~~i~vy~~~ 98 (109)
...|++||..+-|..-.+.|+..|-.-.|+ .-.+++... -+|.+-++.
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 367999999999999999999887665554 444455444 356665554
No 219
>KOG1896|consensus
Probab=26.73 E-value=2.8e+02 Score=26.31 Aligned_cols=35 Identities=17% Similarity=0.025 Sum_probs=30.2
Q ss_pred EEEEEEccCceeEEEecCCEEEEEeCCeEEEEEcC
Q psy3712 64 VVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFI 98 (109)
Q Consensus 64 ~i~el~f~s~V~~V~l~r~~lvVvl~~~i~vy~~~ 98 (109)
.+.+=+-+.+|.+|.=-+.+++..+..||.||++.
T Consensus 1090 el~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1090 ELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLD 1124 (1366)
T ss_pred eeehhhcccceEEEEEeccEEEEccCcEEEEEEec
Confidence 45555667899999999999999999999999994
No 220
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=26.49 E-value=1.6e+02 Score=17.93 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=20.7
Q ss_pred ceEEEEeCCCCcEEEEEEccCceeEEEecCCEEEEE-eCCeEEEEEcC
Q psy3712 52 NRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVV-LEGLIKVYTFI 98 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~lvVv-l~~~i~vy~~~ 98 (109)
+.|-+|++...-.- . ..=-.+.+..+++.|+ -.+.|.||.+.
T Consensus 5 ~vVe~~~n~~s~~~----~-~ts~m~ql~~N~Fav~~e~~~iKIfkyd 47 (63)
T PF14157_consen 5 TVVEISTNHSSDPE----P-NTSNMTQLEHNHFAVVDEDGQIKIFKYD 47 (63)
T ss_dssp ----------------------EEEEE-STTEEEEE-ETTEEEEEEEE
T ss_pred eEEEEcCCCCcccc----c-CcCceEEecCCEEEEEecCCeEEEEEeC
Confidence 34566666652111 1 1224578999999999 88999999997
No 221
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=26.43 E-value=1.9e+02 Score=23.76 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=41.5
Q ss_pred EEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecC-----------CEEEEEeCCeEEEEE
Q psy3712 37 YLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRR-----------DKIVVVLEGLIKVYT 96 (109)
Q Consensus 37 ~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r-----------~~lvVvl~~~i~vy~ 96 (109)
.+.+|| |+.--|.+|.+.-.....++--++||+++|.+. +-|.|+..+.|.+.+
T Consensus 80 ~~I~VG------~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~~~v~~Id 144 (415)
T PF14655_consen 80 TCIAVG------TSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYPSAVVIID 144 (415)
T ss_pred EEEEEE------ecccEEEEEeccchHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEECCEEEEEe
Confidence 444566 456679999996665556777789999999988 788888888777765
No 222
>KOG0973|consensus
Probab=26.27 E-value=2.3e+02 Score=25.94 Aligned_cols=56 Identities=18% Similarity=0.377 Sum_probs=44.7
Q ss_pred EEEEcCCCCCCCCCceEEEEeCCCCcEEE--EEEccCceeEEEecCC---EEEEEeCCeEEEEEcCC
Q psy3712 38 LALVGGGTHPKYPNNRVMIWDDLKKQVVI--CLEFNAPVKGVRLRRD---KIVVVLEGLIKVYTFIQ 99 (109)
Q Consensus 38 ialVg~g~~p~~~~n~v~IwDd~~~~~i~--el~f~s~V~~V~l~r~---~lvVvl~~~i~vy~~~~ 99 (109)
+|-||+- .+.+-||.....++.. .=-|..+|.++..+.| .+++.++..|.+..|.+
T Consensus 296 i~AvgSq------DrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 296 IAAVGSQ------DRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred EEEEecC------CccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 5556642 4679999999988764 3348899999999954 78899999999999973
No 223
>KOG1445|consensus
Probab=26.12 E-value=1.6e+02 Score=26.16 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=40.2
Q ss_pred ceEEEEeCCCCcEEEEEEccC-ceeEEEecCCEEEEEeC---CeEEEEEcCCCCEEeE
Q psy3712 52 NRVMIWDDLKKQVVICLEFNA-PVKGVRLRRDKIVVVLE---GLIKVYTFIQCPQQLH 105 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f~s-~V~~V~l~r~~lvVvl~---~~i~vy~~~~~~~ll~ 105 (109)
..|.|||..+++.+.|+.=.. -|.+.-.++|--+++.. ..|.||+=.-.|+-+.
T Consensus 150 g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ 207 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQ 207 (1012)
T ss_pred ceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccc
Confidence 469999999999999997644 57788888875555443 5799998665555443
No 224
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.86 E-value=2.5e+02 Score=22.16 Aligned_cols=59 Identities=20% Similarity=0.374 Sum_probs=41.1
Q ss_pred CCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCCEEEEEe
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL 88 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~~lvVvl 88 (109)
.+=++-|..-.+-+.+|+.+ |+ -+++.+||..+++.+.+...+. +-+|-...+-+++..
T Consensus 216 ~~Y~gSIa~~~~g~~ia~ts----Pr--Gg~~~~~d~~tg~~~~~~~l~D-~cGva~~~~~f~~ss 274 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTS----PR--GGRVAVWDAATGRLLGSVPLPD-ACGVAPTDDGFLVSS 274 (305)
T ss_pred CCceEEEEEeCCCCEEEEEC----CC--CCEEEEEECCCCCEeeccccCc-eeeeeecCCceEEeC
Confidence 35566677777777787753 22 3789999999999998887764 556666666644443
No 225
>PRK00178 tolB translocation protein TolB; Provisional
Probab=25.70 E-value=3.3e+02 Score=21.34 Aligned_cols=71 Identities=14% Similarity=0.022 Sum_probs=48.0
Q ss_pred CEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeCC----eEEEEEcC
Q psy3712 25 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLEG----LIKVYTFI 98 (109)
Q Consensus 25 ~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~~----~i~vy~~~ 98 (109)
.+.....-.+.+.+|+++... ....+.+||..+++...-..++..+.+...+.| +|++.+.. .|++++..
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~----~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQ----KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCC----CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 444555666788888886432 124699999988876554456666667888864 67766532 68898887
Q ss_pred C
Q psy3712 99 Q 99 (109)
Q Consensus 99 ~ 99 (109)
.
T Consensus 276 ~ 276 (430)
T PRK00178 276 S 276 (430)
T ss_pred C
Confidence 3
No 226
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=25.05 E-value=1.6e+02 Score=24.20 Aligned_cols=31 Identities=13% Similarity=0.277 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEcc
Q psy3712 34 RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN 71 (109)
Q Consensus 34 ~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~ 71 (109)
..++++.+.. .++|+|||..+++.+......
T Consensus 229 ~~~~l~tl~~-------D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 229 DDTFLFTLSR-------DHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTTEEEEEET-------TSEEEEEETTTTCEEEEEETT
T ss_pred CCCEEEEEeC-------CCeEEEEECCCCeEEEEeccc
Confidence 5677766653 478999999999998777555
No 227
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=24.94 E-value=44 Score=26.42 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=52.1
Q ss_pred CCCEEEEE------EcCCccEEEEEcCCCCCCCCCceEEEEeCC---CCcEEEEEEccCceeEEEecCCEEEEEeC-CeE
Q psy3712 23 DGGLGHVE------MLFRCNYLALVGGGTHPKYPNNRVMIWDDL---KKQVVICLEFNAPVKGVRLRRDKIVVVLE-GLI 92 (109)
Q Consensus 23 ~g~v~~ve------ml~~tn~ialVg~g~~p~~~~n~v~IwDd~---~~~~i~el~f~s~V~~V~l~r~~lvVvl~-~~i 92 (109)
..++.|+| ++.+.+++...|||.-| .|.|.. .=..+..-.|.|.-++-.+.-|.|+|.++ +.+
T Consensus 166 P~P~~IvE~~~Ik~L~~~g~vVI~~GGGGIP-------Vv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~V 238 (312)
T COG0549 166 PKPVRIVEAEAIKALLESGHVVIAAGGGGIP-------VVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAV 238 (312)
T ss_pred CCCccchhHHHHHHHHhCCCEEEEeCCCCcc-------eEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchh
Confidence 45667765 56788888889999877 444544 23466788899999999999999999999 888
Q ss_pred EEEEcC
Q psy3712 93 KVYTFI 98 (109)
Q Consensus 93 ~vy~~~ 98 (109)
|+. |.
T Consensus 239 y~n-~g 243 (312)
T COG0549 239 YVN-FG 243 (312)
T ss_pred eec-CC
Confidence 874 44
No 228
>KOG1898|consensus
Probab=24.58 E-value=2.1e+02 Score=26.71 Aligned_cols=77 Identities=12% Similarity=0.226 Sum_probs=52.7
Q ss_pred CCCEEEEEEcCCcc---EEEEEcCCCCCCCCCc-----eEEEEeCCCCc----EEEEEEccCceeEEEecCCEEEEEeCC
Q psy3712 23 DGGLGHVEMLFRCN---YLALVGGGTHPKYPNN-----RVMIWDDLKKQ----VVICLEFNAPVKGVRLRRDKIVVVLEG 90 (109)
Q Consensus 23 ~g~v~~veml~~tn---~ialVg~g~~p~~~~n-----~v~IwDd~~~~----~i~el~f~s~V~~V~l~r~~lvVvl~~ 90 (109)
.+..+++.+.|++. -+..||+..+-...++ .+..|+-..+. ....-+.+.+|.++.=-++++.+...+
T Consensus 875 e~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG~ 954 (1205)
T KOG1898|consen 875 EAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVGR 954 (1205)
T ss_pred cchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEeccc
Confidence 44566666665543 2556666655544444 35666644333 333445578999999999999999999
Q ss_pred eEEEEEcCC
Q psy3712 91 LIKVYTFIQ 99 (109)
Q Consensus 91 ~i~vy~~~~ 99 (109)
.+++|++++
T Consensus 955 ~l~~YdlG~ 963 (1205)
T KOG1898|consen 955 FLRLYDLGK 963 (1205)
T ss_pred EEEEeeCCh
Confidence 999999994
No 229
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=24.41 E-value=66 Score=22.17 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=26.6
Q ss_pred CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcE
Q psy3712 22 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV 64 (109)
Q Consensus 22 ~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~ 64 (109)
.+||+.++.|-++.+++.+-. -++-|+..+-+.
T Consensus 22 G~Gg~R~a~~sh~~SlL~lpd----------gv~~W~v~~~~~ 54 (127)
T COG3737 22 GAGGFRFADMSHRGSLLVLPD----------GVCDWEVATLSD 54 (127)
T ss_pred cCCceEeccccccccEEEecC----------ccccccccChhh
Confidence 589999999999999998843 278888876543
No 230
>KOG0379|consensus
Probab=24.18 E-value=2.4e+02 Score=23.23 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=40.6
Q ss_pred cEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccC---c--eeEEEecCCEEEEE--------eCCeEEEEEcC
Q psy3712 36 NYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA---P--VKGVRLRRDKIVVV--------LEGLIKVYTFI 98 (109)
Q Consensus 36 n~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s---~--V~~V~l~r~~lvVv--------l~~~i~vy~~~ 98 (109)
+.+.+.||...+....+.|..+|..+++-...-.+.. + =-.+-...++++|. ..+.++||++.
T Consensus 123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~ 198 (482)
T KOG0379|consen 123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLE 198 (482)
T ss_pred CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccc
Confidence 6676888777667778899999999987665444433 1 11222233555554 45677777776
No 231
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=23.95 E-value=4.9e+02 Score=22.77 Aligned_cols=54 Identities=11% Similarity=0.064 Sum_probs=37.4
Q ss_pred CceEEEEeCCCCcE---EEEEEccCceeEEEecCC---EEEEEeCCeEEEEEcCC---CCEEe
Q psy3712 51 NNRVMIWDDLKKQV---VICLEFNAPVKGVRLRRD---KIVVVLEGLIKVYTFIQ---CPQQL 104 (109)
Q Consensus 51 ~n~v~IwDd~~~~~---i~el~f~s~V~~V~l~r~---~lvVvl~~~i~vy~~~~---~~~ll 104 (109)
.+++.++|-+++.. +.+-.=.+.|++|+-..+ +++|.+-.+|...+... +++.|
T Consensus 223 r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~~~~~~~l 285 (765)
T PF10214_consen 223 RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSSSEKLTRL 285 (765)
T ss_pred CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccCCCCCeeee
Confidence 34555555555543 223233467999999888 99999999999999986 44544
No 232
>KOG0285|consensus
Probab=23.79 E-value=4.2e+02 Score=21.92 Aligned_cols=94 Identities=19% Similarity=0.181 Sum_probs=56.9
Q ss_pred eEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEE-ccCceeEEEecCCE
Q psy3712 5 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDK 83 (109)
Q Consensus 5 f~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~-f~s~V~~V~l~r~~ 83 (109)
.+|++....+++..-.=..+.+.=+..-.|..++--.|-+ ..|+-||-..+++|.++. --|.|..+.+....
T Consensus 175 ikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ged-------k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl 247 (460)
T KOG0285|consen 175 IKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGED-------KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL 247 (460)
T ss_pred eEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCC-------CeeEEEechhhhhHHHhccccceeEEEeccccc
Confidence 3556665555554321012233334444566677666644 569999999999997654 35678888888544
Q ss_pred EEEEeC---CeEEEEEcCCCCEEeEE
Q psy3712 84 IVVVLE---GLIKVYTFIQCPQQLHI 106 (109)
Q Consensus 84 lvVvl~---~~i~vy~~~~~~~ll~~ 106 (109)
=+++.. ..++||++. +-..+++
T Consensus 248 dvl~t~grDst~RvWDiR-tr~~V~~ 272 (460)
T KOG0285|consen 248 DVLVTGGRDSTIRVWDIR-TRASVHV 272 (460)
T ss_pred eeEEecCCcceEEEeeec-ccceEEE
Confidence 444443 568899988 3344444
No 233
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=23.60 E-value=1.1e+02 Score=25.87 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=0.0
Q ss_pred cceEEEeecCCceeeeeecCCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEcc
Q psy3712 3 DGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN 71 (109)
Q Consensus 3 ~Gf~Iy~~~P~~~~~~~~~~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~ 71 (109)
.|| ||..+.-.+...++ ....-...-+|--+++-+||+ +.+.++|...=+.+.|+.|.
T Consensus 546 ~gy-if~iedg~kl~k~~--e~k~na~RA~fi~dylY~vg~--------~ev~~ldenswe~Vge~~l~ 603 (603)
T COG4880 546 GGY-IFFIEDGSKLRKRA--ERKLNADRAFFIKDYLYLVGG--------NEVWKLDENSWEVVGEAVLK 603 (603)
T ss_pred ccE-EEEEecCceeeehh--hhcccceeeEEecceEEEecc--------ceeEEeccchHhhhhheecC
No 234
>PRK04792 tolB translocation protein TolB; Provisional
Probab=23.49 E-value=4e+02 Score=21.48 Aligned_cols=69 Identities=20% Similarity=0.121 Sum_probs=42.9
Q ss_pred EEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeC--C--eEEEEEcC
Q psy3712 26 LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLE--G--LIKVYTFI 98 (109)
Q Consensus 26 v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~--~--~i~vy~~~ 98 (109)
+.....-.+.+.+|++.... ....+.+||..+++....-.++....+..++.| +|+++.. . .|+++++.
T Consensus 220 ~~~p~wSPDG~~La~~s~~~----g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFEN----RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred ccCceECCCCCEEEEEEecC----CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 33445555666777775321 124689999888776544456655567777765 5766543 2 48888876
No 235
>KOG0322|consensus
Probab=23.05 E-value=1.1e+02 Score=24.11 Aligned_cols=56 Identities=21% Similarity=0.432 Sum_probs=41.4
Q ss_pred CCceEEEEeCC--CC--cEEEEEEccCc-eeEEEecCCEEEEEeC---CeEEEEEcCCCCEEeEE
Q psy3712 50 PNNRVMIWDDL--KK--QVVICLEFNAP-VKGVRLRRDKIVVVLE---GLIKVYTFIQCPQQLHI 106 (109)
Q Consensus 50 ~~n~v~IwDd~--~~--~~i~el~f~s~-V~~V~l~r~~lvVvl~---~~i~vy~~~~~~~ll~~ 106 (109)
+-.++..|.-. ++ +.-.|++...| |-+|+++.|.=|.++. .+|+||+-. +++.|+.
T Consensus 225 a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr-tl~pLAV 288 (323)
T KOG0322|consen 225 ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR-TLNPLAV 288 (323)
T ss_pred ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec-cCCchhh
Confidence 34567777643 33 34467888776 9999999999998886 699999988 5766653
No 236
>KOG1240|consensus
Probab=22.63 E-value=7e+02 Score=24.01 Aligned_cols=72 Identities=18% Similarity=0.331 Sum_probs=52.4
Q ss_pred CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccC--ceeEEEecC-----CEEEEEeC---Ce
Q psy3712 22 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA--PVKGVRLRR-----DKIVVVLE---GL 91 (109)
Q Consensus 22 ~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s--~V~~V~l~r-----~~lvVvl~---~~ 91 (109)
..|-+.-+..=..+|.+ +.|. +.-.+.+||-+-+..+++.++|. +|..|.+.. .-.|.+-. +.
T Consensus 1194 ~hG~vTSi~idp~~~Wl-viGt------s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWL-VIGT------SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred cccceeEEEecCCceEE-EEec------CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence 46888888888888954 5564 23469999999999999999987 577666643 23333333 68
Q ss_pred EEEEEcCCC
Q psy3712 92 IKVYTFIQC 100 (109)
Q Consensus 92 i~vy~~~~~ 100 (109)
+.+|++...
T Consensus 1267 vs~wn~~~g 1275 (1431)
T KOG1240|consen 1267 VSTWNMETG 1275 (1431)
T ss_pred eeeeecccC
Confidence 899998754
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=22.08 E-value=4.1e+02 Score=21.17 Aligned_cols=70 Identities=16% Similarity=0.003 Sum_probs=48.3
Q ss_pred CEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeC----CeEEEEEcC
Q psy3712 25 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLE----GLIKVYTFI 98 (109)
Q Consensus 25 ~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~----~~i~vy~~~ 98 (109)
.+.....-.+-..+|++..+. ....+.+||..+++...-.+++..+.++.++.| +|+++.. ..|+++++.
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~----g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFES----GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecC----CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 455556666677888875321 134689999988876555567777778888877 6776644 268999986
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=22.01 E-value=4.1e+02 Score=21.10 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=0.0
Q ss_pred ccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEecCC--EEEEEeCCe----EEEEEcC
Q psy3712 35 CNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD--KIVVVLEGL----IKVYTFI 98 (109)
Q Consensus 35 tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~--~lvVvl~~~----i~vy~~~ 98 (109)
+.-+|+|..... ...+.+||........-...+.++.+.+++.| +|+.+..+. |+++++.
T Consensus 163 ~~~iayv~~~~~----~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~ 228 (427)
T PRK02889 163 STRIAYVIKTGN----RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLA 228 (427)
T ss_pred ccEEEEEEccCC----ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECC
No 239
>KOG0265|consensus
Probab=21.97 E-value=3.2e+02 Score=21.88 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=41.0
Q ss_pred EEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEccCceeEEEe--cCCEEEEE---eCCeEEEEEcC
Q psy3712 30 EMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRL--RRDKIVVV---LEGLIKVYTFI 98 (109)
Q Consensus 30 eml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~s~V~~V~l--~r~~lvVv---l~~~i~vy~~~ 98 (109)
.-.-.+|-|.-+| +.+.|..||.++++.+..+.-.+...++.- +|.-..|. .+..+.+|++.
T Consensus 97 ~~~~d~s~i~S~g-------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 97 HGMRDGSHILSCG-------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred eeccCCCEEEEec-------CCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence 3344555554444 457899999999999988887776655543 22222232 24689999987
No 240
>KOG4499|consensus
Probab=21.93 E-value=3.5e+02 Score=21.19 Aligned_cols=33 Identities=9% Similarity=0.209 Sum_probs=27.6
Q ss_pred CCceEEEEeCCCCcEEEEEEccCc-eeEEEecCC
Q psy3712 50 PNNRVMIWDDLKKQVVICLEFNAP-VKGVRLRRD 82 (109)
Q Consensus 50 ~~n~v~IwDd~~~~~i~el~f~s~-V~~V~l~r~ 82 (109)
+--+|.-.|..+++...|+.+|++ |....+...
T Consensus 231 ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred cCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 335789999999999999999986 888877655
No 241
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=21.64 E-value=3.9e+02 Score=20.75 Aligned_cols=39 Identities=5% Similarity=0.065 Sum_probs=32.7
Q ss_pred ceEEEEeCCCCcEEEEEEcc-CceeEEEecC---CEEEEEeCCe
Q psy3712 52 NRVMIWDDLKKQVVICLEFN-APVKGVRLRR---DKIVVVLEGL 91 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f~-s~V~~V~l~r---~~lvVvl~~~ 91 (109)
.+|.+||.. ++.+.++.+| ..+.+..+-- +.|.|.....
T Consensus 235 ~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 235 GRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 479999999 9999999999 7788888877 7777777655
No 242
>KOG0649|consensus
Probab=21.57 E-value=4.1e+02 Score=20.93 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=36.4
Q ss_pred ceEEEEeCCCCcEEEEEEc-----------cCceeEEEecCCEEEEEeCCeEEEEEcC
Q psy3712 52 NRVMIWDDLKKQVVICLEF-----------NAPVKGVRLRRDKIVVVLEGLIKVYTFI 98 (109)
Q Consensus 52 n~v~IwDd~~~~~i~el~f-----------~s~V~~V~l~r~~lvVvl~~~i~vy~~~ 98 (109)
-.++|||.++++.+.-|+- .+=|-++-.+.+.+|.--..+..+|.++
T Consensus 178 GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLr 235 (325)
T KOG0649|consen 178 GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLR 235 (325)
T ss_pred ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEecc
Confidence 5699999999998877664 2235677788888888777788888777
No 243
>KOG1900|consensus
Probab=21.35 E-value=1.7e+02 Score=27.74 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=39.1
Q ss_pred CceEEEEeCCCCcEEEEEE-ccCceeEEEecCC-----------EEEEEeCCeEEEEEcC
Q psy3712 51 NNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRD-----------KIVVVLEGLIKVYTFI 98 (109)
Q Consensus 51 ~n~v~IwDd~~~~~i~el~-f~s~V~~V~l~r~-----------~lvVvl~~~i~vy~~~ 98 (109)
.|++.+||-.++....++. +...|++|.|=|= -|||++.-.|.+|-..
T Consensus 98 Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 98 DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVS 157 (1311)
T ss_pred CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEE
Confidence 4899999999988777775 5668999998653 6888999999988665
No 244
>PRK05137 tolB translocation protein TolB; Provisional
Probab=21.12 E-value=4.2e+02 Score=20.95 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=38.1
Q ss_pred EEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEc-cCceeEEEecCC--EEEEEeC----CeEEEEEcCC
Q psy3712 37 YLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF-NAPVKGVRLRRD--KIVVVLE----GLIKVYTFIQ 99 (109)
Q Consensus 37 ~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f-~s~V~~V~l~r~--~lvVvl~----~~i~vy~~~~ 99 (109)
-||+|............+.+||..... ...++. ..++...+++.| +|+.+.. ..|+++++..
T Consensus 167 ~iafv~~~~~~~~~~~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~ 235 (435)
T PRK05137 167 RIVYVAESGPKNKRIKRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET 235 (435)
T ss_pred eEEEEEeeCCCCCcceEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC
Confidence 466664321111225679999975444 344444 458999999876 5655542 4799999863
No 245
>PF12456 hSac2: Inositol phosphatase ; InterPro: IPR022158 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF02383 from PFAM. hSac2 functions as an inositol polyphosphate 5-phosphatase.
Probab=21.06 E-value=2.1e+02 Score=18.85 Aligned_cols=26 Identities=0% Similarity=0.222 Sum_probs=17.2
Q ss_pred cCCEEEEEeCCeEEEEEcCCCCEEeE
Q psy3712 80 RRDKIVVVLEGLIKVYTFIQCPQQLH 105 (109)
Q Consensus 80 ~r~~lvVvl~~~i~vy~~~~~~~ll~ 105 (109)
-.+++++.++..+|+-.+...+..+.
T Consensus 49 e~E~vlLLTd~alyi~~YD~~~~kv~ 74 (115)
T PF12456_consen 49 EEERVLLLTDKALYICKYDFIMEKVS 74 (115)
T ss_pred ccceEEEEecCEEEEEEecCCCccEE
Confidence 46778888888888766664444443
No 246
>KOG1188|consensus
Probab=21.02 E-value=1.8e+02 Score=23.66 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=37.9
Q ss_pred CCCceEEEEeCCCCcEEEEEEccCc-eeEEEecCC----EEEEE-eCCeEEEEEcC
Q psy3712 49 YPNNRVMIWDDLKKQVVICLEFNAP-VKGVRLRRD----KIVVV-LEGLIKVYTFI 98 (109)
Q Consensus 49 ~~~n~v~IwDd~~~~~i~el~f~s~-V~~V~l~r~----~lvVv-l~~~i~vy~~~ 98 (109)
+|.+.+.|||-.+++..-|++.+.+ +-+|++.-+ -+..+ .+..|++|++.
T Consensus 47 lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 47 LSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred ecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 3667899999999999999998764 666777553 34444 44599999987
No 247
>PRK02888 nitrous-oxide reductase; Validated
Probab=20.85 E-value=2.6e+02 Score=24.38 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=41.7
Q ss_pred CCceEEEEeCCC-----CcEEEEEEccCceeEEEecCC--EEEEEe--CCeEEEEEcCC
Q psy3712 50 PNNRVMIWDDLK-----KQVVICLEFNAPVKGVRLRRD--KIVVVL--EGLIKVYTFIQ 99 (109)
Q Consensus 50 ~~n~v~IwDd~~-----~~~i~el~f~s~V~~V~l~r~--~lvVvl--~~~i~vy~~~~ 99 (109)
+.|+|.+.|..+ .+.+..|--+..-=+|.+++| +++|.= .+.+.|+++.+
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 458899999998 578889999999999999984 666664 48999999984
No 248
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=20.83 E-value=69 Score=24.26 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=35.3
Q ss_pred CCCceEEEEeCC---CCcEEEEEEccCceeEEEecCCEEEEEeCC------eEEEEEcCCCCEEeEE
Q psy3712 49 YPNNRVMIWDDL---KKQVVICLEFNAPVKGVRLRRDKIVVVLEG------LIKVYTFIQCPQQLHI 106 (109)
Q Consensus 49 ~~~n~v~IwDd~---~~~~i~el~f~s~V~~V~l~r~~lvVvl~~------~i~vy~~~~~~~ll~~ 106 (109)
..|+...|+|.- ++. .-+.||.++..++++++|=.|=+.+ ++++|.-. |+.+++
T Consensus 161 ~i~~~y~VtekGIv~~~~--~~i~~p~~~~~i~~n~eRkFVEl~~~~~~~~r~RLY~kd--~~kl~~ 223 (233)
T PF09973_consen 161 MIPRSYKVTEKGIVIDGR--MGIKFPLDVYEIKVNEERKFVELRSTNQKPYRIRLYTKD--PDKLYE 223 (233)
T ss_pred ccccceEEEeeeEEecCc--eeeecccccceEEecccceeEEEEcCCCcceEEEEecCC--HHHHHH
Confidence 345566666532 111 1299999999999999988876652 37888754 555544
No 249
>KOG0284|consensus
Probab=20.75 E-value=1.6e+02 Score=24.52 Aligned_cols=73 Identities=14% Similarity=0.332 Sum_probs=46.6
Q ss_pred CCCCEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEEEEEcc-CceeEEEecCC---EEEEEeCCeEEEEEc
Q psy3712 22 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN-APVKGVRLRRD---KIVVVLEGLIKVYTF 97 (109)
Q Consensus 22 ~~g~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~el~f~-s~V~~V~l~r~---~lvVvl~~~i~vy~~ 97 (109)
++..|+.++-..+.+.+ +.|.. --.+++|+...+....--.-. ..|+.+.++.+ ++-..=++.|.|++|
T Consensus 137 HDs~Vr~m~ws~~g~wm-iSgD~------gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf 209 (464)
T KOG0284|consen 137 HDSPVRTMKWSHNGTWM-ISGDK------GGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF 209 (464)
T ss_pred hcccceeEEEccCCCEE-EEcCC------CceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec
Confidence 46788888888888776 44432 246888887765433222222 56777777744 333444589999999
Q ss_pred CCCCE
Q psy3712 98 IQCPQ 102 (109)
Q Consensus 98 ~~~~~ 102 (109)
. .++
T Consensus 210 ~-~~k 213 (464)
T KOG0284|consen 210 R-MPK 213 (464)
T ss_pred c-CCc
Confidence 8 444
No 250
>COG2001 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.68 E-value=79 Score=22.29 Aligned_cols=16 Identities=50% Similarity=1.006 Sum_probs=13.0
Q ss_pred EEEEcCCCCCCCCCceEEEEeCC
Q psy3712 38 LALVGGGTHPKYPNNRVMIWDDL 60 (109)
Q Consensus 38 ialVg~g~~p~~~~n~v~IwDd~ 60 (109)
+++||.| +++-|||..
T Consensus 106 vvlvG~~-------~~~EiW~~~ 121 (146)
T COG2001 106 VVLVGQG-------DRFEIWDKQ 121 (146)
T ss_pred EEEecCC-------CeEEEcCHH
Confidence 5788866 789999965
No 251
>KOG1587|consensus
Probab=20.60 E-value=1.3e+02 Score=25.59 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=37.9
Q ss_pred eEEEEeCC-CCcEEEEEEccCc-eeEEEecCCEEEEE----eCCeEEEEEcCC
Q psy3712 53 RVMIWDDL-KKQVVICLEFNAP-VKGVRLRRDKIVVV----LEGLIKVYTFIQ 99 (109)
Q Consensus 53 ~v~IwDd~-~~~~i~el~f~s~-V~~V~l~r~~lvVv----l~~~i~vy~~~~ 99 (109)
.|+||... ...++..+.-... |.++..+.-|=.|. -+..+++|||..
T Consensus 421 ~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 421 TVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred eeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 58999999 8889988888776 99999999983222 247899999874
No 252
>KOG0286|consensus
Probab=20.55 E-value=4.5e+02 Score=21.06 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=35.4
Q ss_pred CCCceEEEEeCCCCcEEEEEEccC-ceeEEEecCCEEEEEeC
Q psy3712 49 YPNNRVMIWDDLKKQVVICLEFNA-PVKGVRLRRDKIVVVLE 89 (109)
Q Consensus 49 ~~~n~v~IwDd~~~~~i~el~f~s-~V~~V~l~r~~lvVvl~ 89 (109)
|....+.+||.-+++.+..|.=.. .|..++++.|-++|+..
T Consensus 292 y~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~Tg 333 (343)
T KOG0286|consen 292 YDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATG 333 (343)
T ss_pred ecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEec
Confidence 456789999999999999887544 69999999999999986
No 253
>KOG1963|consensus
Probab=20.55 E-value=3.4e+02 Score=24.35 Aligned_cols=54 Identities=9% Similarity=0.134 Sum_probs=41.3
Q ss_pred CceEEEEeCCCCcEEEEEEccCceeEEEecCC---EEEEEeCCeEEEEEcCCCCEEeE
Q psy3712 51 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD---KIVVVLEGLIKVYTFIQCPQQLH 105 (109)
Q Consensus 51 ~n~v~IwDd~~~~~i~el~f~s~V~~V~l~r~---~lvVvl~~~i~vy~~~~~~~ll~ 105 (109)
.-.+..|-..+++.-.==...++|+.+..+.| ..++.-+++|++-..+ +|+...
T Consensus 272 E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~-dl~~k~ 328 (792)
T KOG1963|consen 272 EGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS-DLEIKS 328 (792)
T ss_pred ceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc-chhhhh
Confidence 46789999999885554456899999999987 4566667999999987 466443
No 254
>KOG4441|consensus
Probab=20.50 E-value=3.1e+02 Score=23.18 Aligned_cols=62 Identities=24% Similarity=0.231 Sum_probs=36.8
Q ss_pred CEEEEEEcCCccEEEEEcCCCCCCCCCceEEEEeCCCCcEEE--EEEccCceeEEEecCCEEEEEeC
Q psy3712 25 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVI--CLEFNAPVKGVRLRRDKIVVVLE 89 (109)
Q Consensus 25 ~v~~veml~~tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i~--el~f~s~V~~V~l~r~~lvVvl~ 89 (109)
+.+.+.+= +.|-++||.....-.-+.|..||..+++=.. .+.-+-.=.++-.-.++|.|+=.
T Consensus 420 ~~gv~~~~---g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG 483 (571)
T KOG4441|consen 420 GHGVAVLG---GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGG 483 (571)
T ss_pred eeEEEEEC---CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECC
Confidence 44444443 3455677766665567899999999987443 33333334445555555555543
No 255
>KOG4441|consensus
Probab=20.44 E-value=3.6e+02 Score=22.81 Aligned_cols=52 Identities=19% Similarity=0.129 Sum_probs=30.1
Q ss_pred ccEEEEEcCCCCCCCCCceEEEEeCCCCcEE--EEEEccCceeEEEecCCEEEE
Q psy3712 35 CNYLALVGGGTHPKYPNNRVMIWDDLKKQVV--ICLEFNAPVKGVRLRRDKIVV 86 (109)
Q Consensus 35 tn~ialVg~g~~p~~~~n~v~IwDd~~~~~i--~el~f~s~V~~V~l~r~~lvV 86 (109)
...+.+|||-.+...+-+.+..||.++++-. +.+..+..-.++..-.+.|.|
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv 337 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYV 337 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEE
Confidence 3455577765543567799999999998543 344433333344333444433
No 256
>KOG3441|consensus
Probab=20.30 E-value=1.2e+02 Score=21.15 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=21.0
Q ss_pred CCCCCCCceEEEEeCCCCcEEEEEEccC
Q psy3712 45 THPKYPNNRVMIWDDLKKQVVICLEFNA 72 (109)
Q Consensus 45 ~~p~~~~n~v~IwDd~~~~~i~el~f~s 72 (109)
..|.|.+|.+.+.||.-+-.-.+|.-|-
T Consensus 98 ~~P~fDsNniVLiddnGnPlGtRI~~PI 125 (149)
T KOG3441|consen 98 GVPVFDSNNIVLIDDNGNPLGTRITAPI 125 (149)
T ss_pred CCcccCCCcEEEECCCCCcccceEeccC
Confidence 4699999999999998665445665543
No 257
>KOG0302|consensus
Probab=20.20 E-value=5.1e+02 Score=21.50 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=37.4
Q ss_pred CceEEEEeCCCC---cEEEEEEccCceeEEEecCCEEEEEeC---CeEEEEEcC
Q psy3712 51 NNRVMIWDDLKK---QVVICLEFNAPVKGVRLRRDKIVVVLE---GLIKVYTFI 98 (109)
Q Consensus 51 ~n~v~IwDd~~~---~~i~el~f~s~V~~V~l~r~~lvVvl~---~~i~vy~~~ 98 (109)
...+.|||.+.+ ..++.-.+++.|-.|-.+|+.=.++.. ..+.|+++.
T Consensus 279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR 332 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLR 332 (440)
T ss_pred CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhh
Confidence 345999999987 566667778899999999987755554 478888876
No 258
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=20.04 E-value=55 Score=28.42 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=18.7
Q ss_pred CCCEEEEEEcCCccEEEEEcCC
Q psy3712 23 DGGLGHVEMLFRCNYLALVGGG 44 (109)
Q Consensus 23 ~g~v~~veml~~tn~ialVg~g 44 (109)
.-|+++|||++.+.+|.+....
T Consensus 634 ~FgLslVEM~h~s~WIlLsADs 655 (671)
T PF15390_consen 634 TFGLSLVEMLHGSHWILLSADS 655 (671)
T ss_pred HhCcchhhhhhCCeEEEEecCC
Confidence 3599999999999999888753
Done!