RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3712
         (109 letters)



>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
           {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
          Length = 355

 Score =  114 bits (286), Expect = 4e-32
 Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 1   MEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL 60
               F IYN  P+     Q+     L  V ML R NY+A V G          V IWDD+
Sbjct: 38  TLKSFEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV------KEVVHIWDDV 89

Query: 61  KKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHI 106
           KKQ V  ++ +APVK + L R+ IVV    +I V+ F    +++  
Sbjct: 90  KKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITD 135


>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
           enantioselectivity, directed evolution variant; HET:
           FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
          Length = 495

 Score = 27.2 bits (60), Expect = 1.1
 Identities = 8/34 (23%), Positives = 12/34 (35%)

Query: 56  IWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLE 89
            W++      +   F  PV+ V   RD   V   
Sbjct: 261 FWEEAAGTGRLGYVFGCPVRSVVNERDAARVTAR 294


>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
           fructose-6-phosphate bindi magnesium binding, citrate
           binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
          Length = 941

 Score = 25.1 bits (55), Expect = 6.3
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 12/70 (17%)

Query: 34  RCNYLALVGG---GTH----PKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVV 86
              Y+A       G      P+   +   +  D+     +   F       + +  ++++
Sbjct: 749 NSGYIATHAQLACGAQISYVPEEGISLAQLEMDINS---LKESFANDQG--KTKSGRLIL 803

Query: 87  VLEGLIKVYT 96
             E   KV T
Sbjct: 804 KSENASKVLT 813


>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
           {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
           2yg7_A* 3rha_A*
          Length = 453

 Score = 24.7 bits (54), Expect = 7.7
 Identities = 8/55 (14%), Positives = 20/55 (36%)

Query: 36  NYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEG 90
           ++L         +       +   + + +   +  NAPV+ V+       V+ +G
Sbjct: 197 SHLVDEDFILDKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVLADG 251


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.147    0.470 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,820,815
Number of extensions: 97751
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 9
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)