RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3712
         (109 letters)



>d1s55a1 b.22.1.1 (A:161-316) TRANCE/RANKL cytokine {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 156

 Score = 23.8 bits (51), Expect = 4.9
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 71  NAPVKGVRLRRDKIVVVLEGLIKVYTFIQC 100
            A +  + L   K+ V  +G   +Y  I  
Sbjct: 32  WAKISNMTLSNGKLRVNQDGFYYLYANICF 61


>d2i9ia1 c.51.6.1 (A:51-271) Hypothetical protein HP0492
          {Helicobacter pylori [TaxId: 210]}
          Length = 221

 Score = 23.4 bits (50), Expect = 8.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 61 KKQVVICLEFNAPVKGVRLRRDKIVVVL 88
            + V  L+FN P+  V+  ++  VV +
Sbjct: 6  SSEHVTPLDFNYPIHIVQAPQNHHVVGI 33


>d1tnra_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 144

 Score = 23.0 bits (49), Expect = 8.2
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 76  GVRLRRDKIVVVLEGLIKVYTFIQC 100
           G  L  + ++V   G+  VY+ +  
Sbjct: 30  GFSLSNNSLLVPTSGIYFVYSQVVF 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.147    0.470 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 459,656
Number of extensions: 20141
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 8
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)