BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3715
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NSQ|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside
Diphosphate Kinase: X- Ray Structures Of A
Phospho-Histidine Intermediate Of The Enzymes From
Drosophila And Dictyostelium
pdb|1NSQ|B Chain B, Mechanism Of Phosphate Transfer By Nucleoside
Diphosphate Kinase: X- Ray Structures Of A
Phospho-Histidine Intermediate Of The Enzymes From
Drosophila And Dictyostelium
pdb|1NSQ|C Chain C, Mechanism Of Phosphate Transfer By Nucleoside
Diphosphate Kinase: X- Ray Structures Of A
Phospho-Histidine Intermediate Of The Enzymes From
Drosophila And Dictyostelium
Length = 153
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 39/45 (86%)
Query: 17 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
MA KERTF+M+KPDGVQRGLVG II+RFE KGFKLVA+KF W S
Sbjct: 1 MAANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWAS 45
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 32/34 (94%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
S+ELL++HY+DL+ +PFFPGLV YM+SGPVVPMV
Sbjct: 45 SKELLEKHYADLSARPFFPGLVNYMNSGPVVPMV 78
>pdb|1NDL|A Chain A, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|B Chain B, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|C Chain C, The Awd Nucleotide Diphosphate Kinase From Drosophila
Length = 153
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 39/45 (86%)
Query: 17 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
MA KERTF+M+KPDGVQRGLVG II+RFE KGFKLVA+KF W S
Sbjct: 1 MAANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWAS 45
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 32/34 (94%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
S+ELL++HY+DL+ +PFFPGLV YM+SGPVVPMV
Sbjct: 45 SKELLEKHYADLSARPFFPGLVNYMNSGPVVPMV 78
>pdb|3R9L|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Giardia Lamblia Featuring A Disordered Dinucleotide
Binding Site
Length = 155
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/37 (83%), Positives = 34/37 (91%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKF 57
+ERTFLM+KPDGVQRGLVG II RFE +GFKLVAMKF
Sbjct: 7 RERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKF 43
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 143 IPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+PS+ L+++HY + A +PFF GL K++SSGPV MV
Sbjct: 45 VPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMV 80
>pdb|3BBC|A Chain A, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|B Chain B, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|C Chain C, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|D Chain D, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|E Chain E, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|F Chain F, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
Length = 151
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+ IKPDGVQRGLVG IIKRFE KGF+LVAMKF+ S
Sbjct: 4 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRAS 43
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 29/34 (85%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
SEE LKQHY DL +PFFPGLVKYM+SGPVV MV
Sbjct: 43 SEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMV 76
>pdb|1NSK|R Chain R, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|L Chain L, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|T Chain T, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|U Chain U, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|N Chain N, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|O Chain O, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
Length = 152
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+ IKPDGVQRGLVG IIKRFE KGF+LVAMKF+ S
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRAS 44
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 29/34 (85%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
SEE LKQHY DL +PFFPGLVKYM+SGPVV MV
Sbjct: 44 SEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMV 77
>pdb|1NUE|A Chain A, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|B Chain B, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|C Chain C, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|D Chain D, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|E Chain E, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|F Chain F, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|3BBB|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBF|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
Length = 151
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+ IKPDGVQRGLVG IIKRFE KGF+LVAMKF+ S
Sbjct: 4 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRAS 43
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 29/34 (85%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
SEE LKQHY DL +PFFPGLVKYM+SGPVV MV
Sbjct: 43 SEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMV 76
>pdb|1BHN|A Chain A, Nucleoside Diphosphate Kinase Isoform A From Bovine
Retina
pdb|1BHN|B Chain B, Nucleoside Diphosphate Kinase Isoform A From Bovine
Retina
pdb|1BHN|C Chain C, Nucleoside Diphosphate Kinase Isoform A From Bovine
Retina
pdb|1BHN|D Chain D, Nucleoside Diphosphate Kinase Isoform A From Bovine
Retina
pdb|1BHN|E Chain E, Nucleoside Diphosphate Kinase Isoform A From Bovine
Retina
pdb|1BHN|F Chain F, Nucleoside Diphosphate Kinase Isoform A From Bovine
Retina
Length = 152
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/40 (77%), Positives = 35/40 (87%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+ IKPDGVQRGL+G IIKRFE KGF+LVAMKF+ S
Sbjct: 5 ERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRAS 44
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
SE+LLK+HY DL +PFF GLVKYM SGPVV MV
Sbjct: 44 SEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMV 77
>pdb|1BE4|A Chain A, Nucleoside Diphosphate Kinase Isoform B From Bovine
Retina
pdb|1BE4|B Chain B, Nucleoside Diphosphate Kinase Isoform B From Bovine
Retina
pdb|1BE4|C Chain C, Nucleoside Diphosphate Kinase Isoform B From Bovine
Retina
Length = 151
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/40 (77%), Positives = 35/40 (87%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+ IKPDGVQRGL+G IIKRFE KGF+LVAMKF+ S
Sbjct: 4 ERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRAS 43
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
SE+LLK+HY DL +PFF GLVKYM SGPVV MV
Sbjct: 43 SEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMV 76
>pdb|1ZS6|A Chain A, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|B Chain B, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|D Chain D, Structure Of Human Nucleoside-diphosphate Kinase 3
Length = 169
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 40/61 (65%)
Query: 1 MICTVLHLLYIVIHKIMAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWV 60
MIC VL + + ERTFL +KPDGVQR LVG I++RFE KGFKLVA+K V
Sbjct: 1 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA 60
Query: 61 S 61
S
Sbjct: 61 S 61
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
SEELL++HY++L +PF+ LVKYM+SGPVV MV
Sbjct: 61 SEELLREHYAELRERPFYGRLVKYMASGPVVAMV 94
>pdb|1JXV|A Chain A, Crystal Structure Of Human Nucleoside Diphosphate Kinase
A
pdb|1JXV|B Chain B, Crystal Structure Of Human Nucleoside Diphosphate Kinase
A
pdb|1JXV|C Chain C, Crystal Structure Of Human Nucleoside Diphosphate Kinase
A
pdb|1JXV|D Chain D, Crystal Structure Of Human Nucleoside Diphosphate Kinase
A
pdb|1JXV|E Chain E, Crystal Structure Of Human Nucleoside Diphosphate Kinase
A
pdb|1JXV|F Chain F, Crystal Structure Of Human Nucleoside Diphosphate Kinase
A
pdb|2HVD|A Chain A, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|B Chain B, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|C Chain C, Human Nucleoside Diphosphate Kinase A Complexed With Adp
Length = 152
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 34/40 (85%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+ IKPDGVQRGLVG IIKRFE KGF+LV +KF+ S
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQAS 44
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
SE+LLK+HY DL +PFF GLVKYM SGPVV MV
Sbjct: 44 SEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMV 77
>pdb|3L7U|A Chain A, Crystal Structure Of Human Nm23-H1
pdb|3L7U|B Chain B, Crystal Structure Of Human Nm23-H1
pdb|3L7U|C Chain C, Crystal Structure Of Human Nm23-H1
Length = 172
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 34/40 (85%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+ IKPDGVQRGLVG IIKRFE KGF+LV +KF+ S
Sbjct: 25 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQAS 64
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
SE+LLK+HY DL +PFF GLVKYM SGPVV MV
Sbjct: 64 SEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMV 97
>pdb|2HVE|A Chain A, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|B Chain B, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|C Chain C, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
Length = 152
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 34/40 (85%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+ IKPDGVQRGLVG IIKRFE KGF+LV +KF+ S
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQAS 44
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
SE+LLK+HY DL +PFF GLVKYM SGPVV MV
Sbjct: 44 SEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMV 77
>pdb|1UCN|A Chain A, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|B Chain B, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|C Chain C, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
Length = 152
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 34/40 (85%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+ IKPDGVQRGLVG IIKRFE KGF+LV +KF+ S
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQAS 44
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
SE+LLK+HY DL +P+F GLVKYM SGPVV MV
Sbjct: 44 SEDLLKEHYVDLKDRPWFAGLVKYMHSGPVVAMV 77
>pdb|4FKX|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B
From Trypanosoma Brucei Bound To Cdp
pdb|4FKX|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B
From Trypanosoma Brucei Bound To Cdp
pdb|4FKX|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B
From Trypanosoma Brucei Bound To Cdp
pdb|4FKY|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B
From Trypanosoma Brucei Bound To Gtp
pdb|4FKY|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B
From Trypanosoma Brucei Bound To Gtp
pdb|4FKY|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B
From Trypanosoma Brucei Bound To Gtp
Length = 161
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 33/39 (84%)
Query: 20 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 58
P ERTF+ +KPDGVQR LVG IIKRFE+KG+KLV +K +
Sbjct: 10 PSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLL 48
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 123 RQFYCLNNYLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
++F L KLL P+EE KQHY DLA+KPF+ GLV Y SSGP+V MV
Sbjct: 33 KRFENKGYKLVGLKLLQ----PTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMV 84
>pdb|4F36|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B
From Trypanosoma Brucei, Apo Form
pdb|4F36|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B
From Trypanosoma Brucei, Apo Form
pdb|4F36|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B
From Trypanosoma Brucei, Apo Form
pdb|4F36|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase B
From Trypanosoma Brucei, Apo Form
pdb|4F36|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase B
From Trypanosoma Brucei, Apo Form
pdb|4F36|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase B
From Trypanosoma Brucei, Apo Form
pdb|4F4A|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B
From Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B
From Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B
From Trypanosoma Brucei, Udp-Bound Form
Length = 157
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 33/39 (84%)
Query: 20 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 58
P ERTF+ +KPDGVQR LVG IIKRFE+KG+KLV +K +
Sbjct: 6 PSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLL 44
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 123 RQFYCLNNYLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
++F L KLL P+EE KQHY DLA+KPF+ GLV Y SSGP+V MV
Sbjct: 29 KRFENKGYKLVGLKLLQ----PTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMV 80
>pdb|2ZUA|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
Length = 174
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+M+KPDGVQRGL+G+I+ RFED+G K+V KF+ +
Sbjct: 25 ERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQID 64
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+EL ++HY + KPFF GLV +++SGPV MV
Sbjct: 64 DQELAEEHYGEHEDKPFFDGLVDFITSGPVFAMV 97
>pdb|1XIQ|A Chain A, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|B Chain B, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|C Chain C, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|D Chain D, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|E Chain E, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|F Chain F, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
Length = 157
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 34/37 (91%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 58
E++F+MIKPDGVQRGLVG IIKRFE KG+KL+A+K +
Sbjct: 10 EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKML 46
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 144 PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
P+EE+LK+HY +L+ +PFF LV Y+S GPVV MV
Sbjct: 48 PTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMV 82
>pdb|1NB2|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Bacillus Halodenitrificans
Length = 150
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 32/41 (78%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
KERTFLM+KPDGVQR LVG ++KRFE KG KL K + +S
Sbjct: 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVIS 42
>pdb|1WKJ|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKJ|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKK|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKK|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKL|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
pdb|1WKL|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
Length = 137
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF+MIKPDGV+RGLVG I+ RFE KGF++ A+K + +S
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQIS 41
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 29/34 (85%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
S+EL ++HY++ KPFFPGLV++++SGPVV MV
Sbjct: 41 SQELAERHYAEHREKPFFPGLVRFITSGPVVAMV 74
>pdb|3NGR|A Chain A, Crystal Structure Of Leishmania Nucleoside Diphosphate
Kinase B With Unordered Nucleotide-Binding Loop.
pdb|3NGS|A Chain A, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|B Chain B, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|C Chain C, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGT|A Chain A, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|B Chain B, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|C Chain C, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|D Chain D, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|E Chain E, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|F Chain F, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|G Chain G, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|H Chain H, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|I Chain I, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|J Chain J, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|K Chain K, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|L Chain L, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|M Chain M, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|N Chain N, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGU|A Chain A, Structure Of Leishmania Ndkb Complexed With Adp.
pdb|3NGU|B Chain B, Structure Of Leishmania Ndkb Complexed With Adp
Length = 151
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK 56
ERTF+ +KPDGVQRGLVG II RFE KG+KLVA+K
Sbjct: 4 ERTFIAVKPDGVQRGLVGEIIARFERKGYKLVALK 38
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 144 PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
P+ E + HY DL +KPFFP LVKY SSGP+V MV
Sbjct: 42 PTTEQAQGHYKDLCSKPFFPALVKYFSSGPIVCMV 76
>pdb|3JS9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase
Family Protein From Babesia Bovis
pdb|3JS9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase
Family Protein From Babesia Bovis
pdb|3JS9|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase
Family Protein From Babesia Bovis
Length = 156
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 32/36 (88%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKF 57
ERT++M+KPDGVQRGL+G I+KRFE KG KL+A KF
Sbjct: 10 ERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKF 45
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 144 PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
P+ +++ QHY + KPFF L ++S GPV M+
Sbjct: 48 PTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMI 82
>pdb|2AZ3|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|G Chain G, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|H Chain H, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|I Chain I, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
Length = 164
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 33/42 (78%)
Query: 17 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 58
M + ERTF+M+KPDGVQRGL+G+I+ R E KG K+V KF+
Sbjct: 4 MTDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFM 45
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
EEL +HY++ KPFF GLV +++SGPV MV
Sbjct: 48 DEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMV 81
>pdb|2AZ1|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
Length = 181
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 33/42 (78%)
Query: 17 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 58
M + ERTF+M+KPDGVQRGL+G+I+ R E KG K+V KF+
Sbjct: 21 MTDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFM 62
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
EEL +HY++ KPFF GLV +++SGPV MV
Sbjct: 65 DEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMV 98
>pdb|3B54|A Chain A, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
pdb|3B54|B Chain B, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
Length = 161
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 33/42 (78%)
Query: 17 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 58
M+ ERTF+ +KPDGVQRGLV I+ RFE KG+KLVA+K V
Sbjct: 9 MSSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLV 50
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
++LL+QHY++ KPFFP +V +M SGP++ V
Sbjct: 53 DDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATV 86
>pdb|1PKU|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|G Chain G, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|H Chain H, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|I Chain I, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|J Chain J, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|K Chain K, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|L Chain L, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
Length = 150
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 32/37 (86%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 58
E++F+MIKPDGVQRGL+G+II RFE KGF L MKF+
Sbjct: 3 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFM 39
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 26/29 (89%)
Query: 150 KQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+QHY+DL+ KPFFPGLV+Y+ SGPVV MV
Sbjct: 47 QQHYADLSDKPFFPGLVEYIISGPVVAMV 75
>pdb|1S57|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase 2
From Arabidopsis
pdb|1S57|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase 2
From Arabidopsis
pdb|1S57|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase 2
From Arabidopsis
pdb|1S57|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase 2
From Arabidopsis
pdb|1S57|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase 2
From Arabidopsis
pdb|1S57|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase 2
From Arabidopsis
pdb|1S59|A Chain A, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|B Chain B, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|C Chain C, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|D Chain D, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|E Chain E, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|F Chain F, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
Length = 153
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 19 EPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK 56
E E T++M+KPDG+QRGLVG II RFE KGFKL+ +K
Sbjct: 3 EDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLK 40
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 146 EELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+EL ++HY DL+ K FFP L++Y++SGPVV M
Sbjct: 46 KELAEEHYKDLSAKSFFPNLIEYITSGPVVCMA 78
>pdb|1U8W|A Chain A, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|B Chain B, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|C Chain C, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|D Chain D, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|E Chain E, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|F Chain F, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
Length = 149
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 13/108 (12%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCVSFLEK---KSACCRMVS 78
E+TF+MIKPDGVQRGL+G +I RFE KGF L +K +S SF EK + S
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKL--ISVERSFAEKHYEDLSSKSFFS 59
Query: 79 SVPAYEISGKLL--------VGITYSTVLGHLNLETSECPLFHIDYEL 118
+ Y +SG ++ V +T ++G N SE D+ +
Sbjct: 60 GLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAI 107
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 150 KQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
++HY DL++K FF GLV Y+ SGPVV M+
Sbjct: 46 EKHYEDLSSKSFFSGLVDYIVSGPVVAMI 74
>pdb|1MN7|A Chain A, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
pdb|1MN7|B Chain B, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
Length = 155
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV------------------WVSF 62
KERTFL +KPDGV RGLVG II R+E KGF LV +K + W
Sbjct: 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPWFGG 67
Query: 63 CVSFLEKKSACCRMVSSVPAYEISGKLLVGIT 94
VSF+ MV S +L++G+T
Sbjct: 68 LVSFI-TSGPVVAMVFEGKGVVASARLMIGVT 98
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 143 IPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+P+++L + HY++ +P+F GLV +++SGPVV MV
Sbjct: 46 VPTKDLAESHYAEHKERPWFGGLVSFITSGPVVAMV 81
>pdb|2CWK|A Chain A, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2CWK|B Chain B, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2DXD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXE|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXE|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXF|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DXF|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DY9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DY9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DYA|A Chain A, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
pdb|2DYA|B Chain B, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
Length = 160
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERT ++IKPD V RGL+G II RFE KG K+V MK +W+
Sbjct: 8 ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWID 47
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
EL ++HY + KPFF L+ Y++ PVV MV
Sbjct: 47 DRELAEKHYEEHREKPFFKALIDYITKTPVVVMV 80
>pdb|3PRV|A Chain A, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|B Chain B, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|C Chain C, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|D Chain D, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|E Chain E, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|F Chain F, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
Length = 157
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK 56
ERTF+ +KPDGVQR LVG II+RFE KG+KLVA+K
Sbjct: 10 ERTFIAVKPDGVQRCLVGEIIQRFEKKGYKLVALK 44
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 144 PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
PS E +QHY DLA+KPF+ LV Y SSGP+V MV
Sbjct: 48 PSAEQAQQHYIDLASKPFYKDLVAYFSSGPIVGMV 82
>pdb|1W7W|A Chain A, Structure And Mutational Analysis Of A Plant
Mitochondrial Nucleoside Diphosphate Kinase:
Identification Of Residues Involved In Serine
Phosphorylation And Oligomerization.
pdb|1W7W|B Chain B, Structure And Mutational Analysis Of A Plant
Mitochondrial Nucleoside Diphosphate Kinase:
Identification Of Residues Involved In Serine
Phosphorylation And Oligomerization.
pdb|1W7W|C Chain C, Structure And Mutational Analysis Of A Plant
Mitochondrial Nucleoside Diphosphate Kinase:
Identification Of Residues Involved In Serine
Phosphorylation And Oligomerization.
pdb|1W7W|D Chain D, Structure And Mutational Analysis Of A Plant
Mitochondrial Nucleoside Diphosphate Kinase:
Identification Of Residues Involved In Serine
Phosphorylation And Oligomerization.
pdb|1W7W|E Chain E, Structure And Mutational Analysis Of A Plant
Mitochondrial Nucleoside Diphosphate Kinase:
Identification Of Residues Involved In Serine
Phosphorylation And Oligomerization.
pdb|1W7W|F Chain F, Structure And Mutational Analysis Of A Plant
Mitochondrial Nucleoside Diphosphate Kinase:
Identification Of Residues Involved In Serine
Phosphorylation And Oligomerization
Length = 182
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 29/35 (82%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK 56
ERTF+ IKPDGVQRGL+ II RFE KGFKLV +K
Sbjct: 33 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIK 67
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 143 IPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
IP+++ +QHY DL +PFF GL ++SSGPV+ MV
Sbjct: 70 IPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMV 105
>pdb|1LWX|A Chain A, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|B Chain B, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|C Chain C, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
Length = 155
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 29/36 (80%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK 56
KERTFL +KPDGV RGLVG II R+E KGF LV +K
Sbjct: 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 143 IPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+P+++L + HY++ +PFF GLV +++SGPVV MV
Sbjct: 46 VPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMV 81
>pdb|1HLW|A Chain A, Structure Of The H122a Mutant Of The Nucleoside
Diphosphate Kinase
Length = 155
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 29/36 (80%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK 56
KERTFL +KPDGV RGLVG II R+E KGF LV +K
Sbjct: 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 143 IPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+P+++L + HY++ +PFF GLV +++SGPVV MV
Sbjct: 46 VPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMV 81
>pdb|1PAE|X Chain X, Nucleoside Diphosphate Kinase
Length = 155
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 29/36 (80%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK 56
KERTFL +KPDGV RGLVG II R+E KGF LV +K
Sbjct: 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 27/36 (75%)
Query: 143 IPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+P+++L + HY++ +PFF GLV +++SGPVV V
Sbjct: 46 VPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAXV 81
>pdb|1LEO|A Chain A, P100s Nucleoside Diphosphate Kinase
Length = 150
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 29/36 (80%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK 56
KERTFL +KPDGV RGLVG II R+E KGF LV +K
Sbjct: 3 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 38
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 143 IPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+P+++L + HY++ +PFF GLV +++SGPVV MV
Sbjct: 41 VPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMV 76
>pdb|1NDP|A Chain A, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1NDP|B Chain B, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1KDN|A Chain A, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|B Chain B, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|C Chain C, Structure Of Nucleoside Diphosphate Kinase
pdb|2BEF|A Chain A, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|B Chain B, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|C Chain C, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|1BUX|A Chain A, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|B Chain B, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|C Chain C, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|A Chain A, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|B Chain B, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|C Chain C, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|D Chain D, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|E Chain E, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|F Chain F, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1F6T|A Chain A, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|B Chain B, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|C Chain C, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1HIY|A Chain A, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|B Chain B, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|C Chain C, Binding Of Nucleotides To Ndp Kinase
pdb|1S5Z|A Chain A, Ndp Kinase In Complex With Adenosine Phosphonoacetic
Acid
pdb|1S5Z|B Chain B, Ndp Kinase In Complex With Adenosine Phosphonoacetic
Acid
pdb|1S5Z|C Chain C, Ndp Kinase In Complex With Adenosine Phosphonoacetic
Acid
pdb|1S5Z|D Chain D, Ndp Kinase In Complex With Adenosine Phosphonoacetic
Acid
pdb|1S5Z|E Chain E, Ndp Kinase In Complex With Adenosine Phosphonoacetic
Acid
pdb|1S5Z|F Chain F, Ndp Kinase In Complex With Adenosine Phosphonoacetic
Acid
pdb|1NDC|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase
Complexed With Dtdp And Mg2+ At 2 A Resolution
Length = 155
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 29/36 (80%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK 56
KERTFL +KPDGV RGLVG II R+E KGF LV +K
Sbjct: 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 143 IPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+P+++L + HY++ +PFF GLV +++SGPVV MV
Sbjct: 46 VPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMV 81
>pdb|1NSP|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside
Diphosphate Kinase: X- Ray Structures Of A
Phospho-Histidine Intermediate Of The Enzymes From
Drosophila And Dictyostelium
Length = 155
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 29/36 (80%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK 56
KERTFL +KPDGV RGLVG II R+E KGF LV +K
Sbjct: 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 143 IPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+P+++L + HY++ +PFF GLV +++SGPVV MV
Sbjct: 46 VPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMV 81
>pdb|1NPK|A Chain A, Refined X-Ray Structure Of Dictyostelium Nucleoside
Diphosphate Kinase At 1,8 Angstroms Resolution
Length = 154
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 29/36 (80%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK 56
KERTFL +KPDGV RGLVG II R+E KGF LV +K
Sbjct: 7 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 42
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 143 IPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+P+++L + HY++ +PFF GLV +++SGPVV MV
Sbjct: 45 VPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMV 80
>pdb|1B4S|A Chain A, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|B Chain B, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|C Chain C, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1F3F|A Chain A, Structure Of The H122g Nucleoside Diphosphate Kinase
D4T- Triphosphate.Mg Complex
pdb|1F3F|B Chain B, Structure Of The H122g Nucleoside Diphosphate Kinase
D4T- Triphosphate.Mg Complex
pdb|1F3F|C Chain C, Structure Of The H122g Nucleoside Diphosphate Kinase
D4T- Triphosphate.Mg Complex
pdb|1MN9|A Chain A, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|B Chain B, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|C Chain C, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|3FKB|A Chain A, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|B Chain B, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|C Chain C, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|D Chain D, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|E Chain E, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|F Chain F, Structure Of Ndpk H122g And Tenofovir-Diphosphate
Length = 155
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 29/36 (80%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK 56
KERTFL +KPDGV RGLVG II R+E KGF LV +K
Sbjct: 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 143 IPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+P+++L + HY++ +PFF GLV +++SGPVV MV
Sbjct: 46 VPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMV 81
>pdb|1NCL|A Chain A, Thermal Stability Of Hexameric And Tetrameric
Nucleoside, Diphosphate Kinases
Length = 150
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 29/36 (80%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK 56
KERTFL +KPDGV RGLVG II R+E KGF LV +K
Sbjct: 3 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 38
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 143 IPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+P+++L + HY++ +PFF GLV +++SGPVV MV
Sbjct: 41 VPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMV 76
>pdb|1NDK|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase
Length = 155
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 29/36 (80%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK 56
KERTFL +KPDGV RGLVG II R+E KGF LV +K
Sbjct: 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 143 IPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+P+++L + HY++ +PFF GLV +++SGPVV MV
Sbjct: 46 VPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMV 81
>pdb|2VU5|A Chain A, Crystal Structure Of Pndk From Bacillus Anthracis
Length = 148
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
E+TFLM+KPDGVQR +G I+ RFE KGF+LV K + V+
Sbjct: 2 EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVT 41
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 147 ELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
E+ QHY++ KPFF LV +++SGPV MV
Sbjct: 43 EIAGQHYAEHEEKPFFGELVDFITSGPVFAMV 74
>pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4
pdb|1EHW|B Chain B, Human Nucleoside Diphosphate Kinase 4
Length = 162
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 58
+ERT + +KPDGVQR LVG++I+RFE +GF LV MK +
Sbjct: 24 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKML 61
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 146 EELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
E +L +HY DL KPF+P L++YMSSGPVV MV
Sbjct: 65 ESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMV 97
>pdb|1HHQ|A Chain A, Role Of Active Site Resiude Lys16 In Nucleoside
Diphosphate Kinase
Length = 155
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 28/36 (77%)
Query: 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK 56
KERTFL + PDGV RGLVG II R+E KGF LV +K
Sbjct: 8 KERTFLAVAPDGVARGLVGEIIARYEKKGFVLVGLK 43
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 143 IPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
+P+++L + HY++ +PFF GLV +++SGPVV MV
Sbjct: 46 VPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMV 81
>pdb|3Q83|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q86|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q86|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q89|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q8U|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8V|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8Y|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
Length = 157
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 28/39 (71%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWV 60
ERTFLMIKPD VQR L+G +I R E KG KLV K + V
Sbjct: 2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQV 40
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 147 ELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
EL + HY + KPF+ L+ +++S PV MV
Sbjct: 43 ELAETHYGEHQGKPFYNDLISFITSAPVFAMV 74
>pdb|2NCK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A
Nucleotide Substrate At 2.0 Angstroms Resolution
pdb|2NCK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A
Nucleotide Substrate At 2.0 Angstroms Resolution
pdb|1NLK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A
Nucleotide Substrate At 2.0 Angstroms Resolution
pdb|1NLK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A
Nucleotide Substrate At 2.0 Angstroms Resolution
pdb|1NHK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A
Nucleotide Substrate At 2.0 Angstroms Resolution
pdb|1NHK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A
Nucleotide Substrate At 2.0 Angstroms Resolution
Length = 144
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 31/40 (77%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERT +IKPDG+++G++G II RFE+KG K VA++ +S
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLS 42
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 153 YSDLATKPFFPGLVKYMSSGPVVPMV 178
Y+ +PFF LV++M SGPVV MV
Sbjct: 50 YAVHKARPFFKDLVQFMISGPVVLMV 75
>pdb|1XQI|A Chain A, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|B Chain B, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|C Chain C, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
Length = 195
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 20 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
P E+T L++KPD V RGLV II RF+ G K+VA+K V S
Sbjct: 14 PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKXVKAS 55
>pdb|3MPD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
pdb|3MPD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
Length = 151
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 58
ERTF+MIKPD ++R L+ II+RFE+KG L A K V
Sbjct: 6 ERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCV 42
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 131 YLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
YL K + IP E+L+ HYS L++ PFF +V+ M SG V+ MV
Sbjct: 35 YLAASKCV----IPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMV 78
>pdb|1K44|A Chain A, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|B Chain B, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|C Chain C, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|D Chain D, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|E Chain E, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|F Chain F, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
Length = 136
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERT ++IKPDG++R L+G II R E KG + A++ VS
Sbjct: 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVS 42
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
S EL QHY++ KPFF L+++++SGPVV +
Sbjct: 42 SAELASQHYAEHEGKPFFGSLLEFITSGPVVAAI 75
>pdb|4DI6|A Chain A, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|B Chain B, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|C Chain C, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|D Chain D, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|E Chain E, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|F Chain F, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DZ6|A Chain A, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|B Chain B, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|C Chain C, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|D Chain D, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|E Chain E, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|F Chain F, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
Length = 190
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
++T ++KPDGV+RGL+G+++ RFE G K+VA K + V
Sbjct: 27 QKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVD 66
>pdb|3PJ9|A Chain A, Crystal Structure Of A Nucleoside Diphosphate Kinase
From Campylobacter Jejuni
pdb|3PJ9|B Chain B, Crystal Structure Of A Nucleoside Diphosphate Kinase
From Campylobacter Jejuni
pdb|3PJ9|C Chain C, Crystal Structure Of A Nucleoside Diphosphate Kinase
From Campylobacter Jejuni
pdb|3PJ9|D Chain D, Crystal Structure Of A Nucleoside Diphosphate Kinase
From Campylobacter Jejuni
Length = 140
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
E+T +IKPD V++G++G I+ RFE G ++ AMK V +S
Sbjct: 5 EKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLS 44
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVV 175
S+E + Y+ +PFF LV++M SGPVV
Sbjct: 44 SKEQAENFYAVHKERPFFKDLVEFMISGPVV 74
>pdb|2B8P|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Ndk, The First Viral Nucleoside Diphosphate Kinase
pdb|2B8P|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Ndk, The First Viral Nucleoside Diphosphate Kinase
pdb|3B6B|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
Length = 157
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCVSFLEK 69
+RT ++IKPD +R LV I+ R E K FK+V+MKF W + +E+
Sbjct: 22 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF-WSKAPRNLIEQ 68
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 148 LLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
L++QHY + + + +F +M SGP++ +V
Sbjct: 65 LIEQHYKEHSEQSYFNDNCDFMVSGPIISIV 95
>pdb|3EJM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EJM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EVO|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
pdb|3EVO|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
Length = 146
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCVSFLEK 69
+RT ++IKPD +R LV I+ R E K FK+V+MKF W + +E+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF-WSKAPRNLIEQ 53
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 148 LLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
L++QHY + + + +F +M SGP++ +V
Sbjct: 50 LIEQHYKEHSEQSYFNDNCDFMVSGPIISIV 80
>pdb|3EM1|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3EM1|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3G2X|A Chain A, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|B Chain B, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|C Chain C, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|D Chain D, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|E Chain E, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|F Chain F, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3FC9|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|C Chain C, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|D Chain D, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|E Chain E, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|F Chain F, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
Length = 146
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCVSFLEK 69
+RT ++IKPD +R LV I+ R E K FK+V+MKF W + +E+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF-WSKAPRNLIEQ 53
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 148 LLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
L++QHY + + + +F L +M SGP++ +V
Sbjct: 50 LIEQHYKEHSEQSYFNDLCDFMVSGPIISIV 80
>pdb|3DDI|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3DDI|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3ENA|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ENA|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ETM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3ETM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3EVM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3EVM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3FCV|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3FCV|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3DKD|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
pdb|3DKD|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
Length = 146
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCVSFLEK 69
+RT ++IKPD +R LV I+ R E K FK+V+MKF W + +E+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF-WSKAPRNLIEQ 53
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 148 LLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
L++QHY + + + +F L +M SGP++ +V
Sbjct: 50 LIEQHYKEHSEQSYFNDLCDFMVSGPIISIV 80
>pdb|3EMT|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
pdb|3EMT|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
Length = 146
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCVSFLEK 69
+RT ++IKPD +R LV I+ R E K FK+V+MKF W + +E+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF-WSKAPRNLIEQ 53
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 148 LLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
L++QHY + + + +F +M SGP++ +V
Sbjct: 50 LIEQHYKEHSEQSYFNDNCDFMVSGPIISIV 80
>pdb|2B8Q|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|3EE3|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EIC|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3ELH|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3GP9|A Chain A, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
pdb|3GP9|B Chain B, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
pdb|3GP9|C Chain C, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
pdb|3GP9|D Chain D, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
pdb|3GP9|E Chain E, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
pdb|3GP9|F Chain F, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
Length = 142
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCVSFLEK 69
+RT ++IKPD +R LV I+ R E K FK+V+MKF W + +E+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF-WSKAPRNLIEQ 53
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 148 LLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
L++QHY + + + +F +M SGP++ +V
Sbjct: 50 LIEQHYKEHSEQSYFNDNCDFMVSGPIISIV 80
>pdb|3FBF|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FCW|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3GPA|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
Length = 142
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCVSFLEK 69
+RT ++IKPD +R LV I+ R E K FK+V+MKF W + +E+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF-WSKAPRNLIEQ 53
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 148 LLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
L++QHY + + + +F L +M SGP++ +V
Sbjct: 50 LIEQHYKEHSEQSYFNDLCDFMVSGPIISIV 80
>pdb|2HUR|A Chain A, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|B Chain B, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|C Chain C, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|D Chain D, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|E Chain E, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|F Chain F, Escherichia Coli Nucleoside Diphosphate Kinase
Length = 142
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERTF +IKP+ V + ++GNI RFE GFK+V K + ++
Sbjct: 3 ERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLT 42
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 147 ELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
E + Y++ KPFF GLV++M+SGP+V V
Sbjct: 44 EQARGFYAEHDGKPFFDGLVEFMTSGPIVVSV 75
>pdb|3FBE|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBB|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBC|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
Length = 142
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCVSFLEK 69
+RT ++IKPD +R LV I+ R E K FK+V+MKF W + +E+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF-WSKAPRNLIEQ 53
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 148 LLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
L++QHY + + + +F L +M SGP++ +V
Sbjct: 50 LIEQHYKEHSEQSYFNDLCDFMVSGPIISIV 80
>pdb|3EVW|A Chain A, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|B Chain B, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|C Chain C, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|D Chain D, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|E Chain E, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|F Chain F, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
Length = 142
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCVSFLEK 69
+RT ++IKPD +R LV I+ R E K FK+V+MKF W + +E+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF-WSKAPRNLIEQ 53
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 148 LLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
L++QHY + + + +F +M SGP++ +V
Sbjct: 50 LIEQHYKEHSEQSYFNDNCDFMVSGPIISIV 80
>pdb|3VGU|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|I Chain I, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|J Chain J, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|K Chain K, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|L Chain L, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|M Chain M, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|N Chain N, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|O Chain O, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|P Chain P, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERT +IKPD V + ++G I RFE G K+VA K + +S
Sbjct: 4 ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLS 43
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
S+E + Y++ +PFF LV +M+SGPVV V
Sbjct: 43 SQEQAEGFYAEHKERPFFGDLVGFMTSGPVVVQV 76
>pdb|3VGS|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGS|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|C Chain C, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|D Chain D, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|E Chain E, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERT +IKPD V + ++G I RFE G K+VA K + +S
Sbjct: 4 ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLS 43
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 145 SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
S+E + Y++ +PFF LV +M+SGPVV V
Sbjct: 43 SQEQAEGFYAEHKERPFFGDLVGFMTSGPVVVQV 76
>pdb|4DUT|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk)
From Burkholderia Thailandensis
pdb|4DUT|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk)
From Burkholderia Thailandensis
pdb|4EK2|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk)
From Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4EK2|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk)
From Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4HR2|A Chain A, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
pdb|4HR2|B Chain B, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
Length = 145
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVS 61
ERT +IKPD V + ++G I RFE+ G K+VA + +S
Sbjct: 8 ERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLS 47
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 150 KQHYSDLATKPFFPGLVKYMSSGPVVPMV 178
++ Y+ A +PFF LV++M SGPV+ V
Sbjct: 52 EKFYAVHAERPFFKDLVEFMISGPVMIQV 80
>pdb|3ZTQ|A Chain A, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|B Chain B, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|C Chain C, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|D Chain D, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|E Chain E, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|F Chain F, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|G Chain G, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|H Chain H, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTO|A Chain A, Orthorhombic Crystal Form C222 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|A Chain A, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|C Chain C, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTR|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTS|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
Length = 142
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 27/35 (77%)
Query: 22 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK 56
ERT +++KPD +++G +G I+ RF +GF++ A+K
Sbjct: 4 ERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALK 38
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 159 KPFFPGLVKYMSSGPVVPMV 178
+PFF LV++MSSGPVV V
Sbjct: 57 RPFFQELVEFMSSGPVVAAV 76
>pdb|1VZV|A Chain A, Structure Of Varicella-Zoster Virus Protease
Length = 221
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 84 EISGKLLVGITYSTVLGHLNLETSECPLF-HIDYELFPAERQFYCLNNYLTTCKLLTEMG 142
+I G +GI L + E + F + D L P ER Y + NYL + L ++
Sbjct: 57 DIRGPFFLGIVRCPQLHAVLFEAAHSNFFGNRDSVLSPLERALYLVTNYLPSVSLSSKRL 116
Query: 143 IPSE 146
P+E
Sbjct: 117 SPNE 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.142 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,229,382
Number of Sequences: 62578
Number of extensions: 200806
Number of successful extensions: 651
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 130
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)