Query psy3715
Match_columns 179
No_of_seqs 168 out of 1368
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 23:41:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zs6_A Nucleoside diphosphate 100.0 9.9E-36 3.4E-40 242.0 1.4 117 1-119 1-128 (169)
2 4hr2_A Nucleoside diphosphate 100.0 1.8E-35 6.3E-40 235.5 1.9 97 21-119 7-114 (145)
3 4fkx_A NDK B, nucleoside dipho 100.0 6.3E-35 2.2E-39 236.1 1.3 98 20-119 10-118 (161)
4 3l7u_A Nucleoside diphosphate 100.0 9.8E-35 3.3E-39 237.2 2.0 109 9-119 12-131 (172)
5 3b54_A NDK, NDP kinase, nucleo 100.0 6.3E-35 2.2E-39 235.7 0.6 104 14-119 6-120 (161)
6 3mpd_A Nucleoside diphosphate 100.0 1E-34 3.6E-39 232.2 1.8 98 20-119 4-112 (151)
7 3evo_A NDP kinase, NDK, nucleo 100.0 1.3E-34 4.6E-39 230.4 2.0 98 20-119 5-114 (146)
8 3q8u_A Nucleoside diphosphate 100.0 1.6E-34 5.5E-39 232.6 2.0 97 21-119 1-108 (157)
9 1wkj_A Nucleoside diphosphate 100.0 1.8E-34 6E-39 226.9 1.6 97 21-119 1-108 (137)
10 1xiq_A Nucleoside diphosphate 100.0 4.5E-34 1.5E-38 229.9 3.8 98 20-119 8-116 (157)
11 3fkb_A NDP kinase, NDK, nucleo 100.0 2E-34 6.9E-39 231.5 1.3 98 20-119 7-115 (155)
12 1k44_A Nucleoside diphosphate 100.0 3E-34 1E-38 225.4 2.0 98 21-120 2-111 (136)
13 2hur_A NDK, nucleoside diphosp 100.0 3.4E-34 1.2E-38 226.7 1.9 97 21-119 2-109 (142)
14 3r9l_A Nucleoside diphosphate 100.0 4E-34 1.4E-38 229.8 2.1 97 21-119 7-114 (155)
15 1nhk_R Nucleoside diphosphate 100.0 3.5E-34 1.2E-38 227.2 1.4 97 21-119 2-109 (144)
16 2vu5_A Nucleoside diphosphate 100.0 3.4E-34 1.2E-38 228.0 1.2 97 21-119 1-108 (148)
17 1s57_A Nucleoside diphosphate 100.0 5.3E-34 1.8E-38 228.1 1.9 98 20-119 4-112 (153)
18 3bbb_A Nucleoside diphosphate 100.0 4.4E-34 1.5E-38 228.2 1.4 98 20-119 2-110 (151)
19 1pku_A Nucleoside diphosphate 100.0 4.3E-34 1.5E-38 228.0 1.3 97 21-119 2-109 (150)
20 2az3_A Nucleoside diphosphate 100.0 5.8E-34 2E-38 230.6 1.6 101 16-118 3-114 (164)
21 1u8w_A Nucleoside diphosphate 100.0 5.6E-34 1.9E-38 227.2 1.1 97 21-119 1-108 (149)
22 2dxe_A Nucleoside diphosphate 100.0 5.9E-34 2E-38 229.5 1.2 99 20-120 6-115 (160)
23 1nb2_A Nucleoside diphosphate 100.0 6E-34 2E-38 227.2 0.8 97 21-119 2-109 (150)
24 3ztp_A Nucleoside diphosphate 100.0 3.8E-34 1.3E-38 226.4 -0.9 97 21-119 3-113 (142)
25 1ehw_A NDPK H4, nucleoside dip 100.0 1.1E-33 3.6E-38 228.8 1.6 98 20-119 23-131 (162)
26 3js9_A Nucleoside diphosphate 100.0 1.2E-33 4.2E-38 227.3 1.3 98 20-119 8-116 (156)
27 1w7w_A Nucleoside diphosphate 100.0 2.1E-33 7E-38 230.9 1.8 103 15-119 26-139 (182)
28 4dz6_A Nucleoside diphosphate 100.0 1.8E-33 6E-38 232.8 -0.8 103 16-120 21-139 (190)
29 1xqi_A Nucleoside diphosphate 100.0 8.2E-32 2.8E-36 223.1 -0.3 99 20-120 14-156 (195)
30 3bh7_B Protein XRP2; protein-p 99.8 1.1E-21 3.9E-26 174.4 2.8 95 19-124 233-338 (352)
31 4hr2_A Nucleoside diphosphate 99.5 3.8E-14 1.3E-18 112.7 5.2 48 132-179 25-81 (145)
32 1k44_A Nucleoside diphosphate 99.5 4.5E-14 1.5E-18 110.6 5.1 48 132-179 20-76 (136)
33 3mpd_A Nucleoside diphosphate 99.5 4.5E-14 1.5E-18 112.7 4.9 48 132-179 23-79 (151)
34 3evo_A NDP kinase, NDK, nucleo 99.4 5.6E-14 1.9E-18 111.6 5.1 48 132-179 24-81 (146)
35 3ztp_A Nucleoside diphosphate 99.4 6E-14 2.1E-18 110.7 5.2 48 132-179 21-77 (142)
36 1wkj_A Nucleoside diphosphate 99.4 5.4E-14 1.8E-18 110.3 4.9 48 132-179 19-75 (137)
37 2hur_A NDK, nucleoside diphosp 99.4 6.7E-14 2.3E-18 110.4 5.2 48 132-179 20-76 (142)
38 1nhk_R Nucleoside diphosphate 99.4 6.9E-14 2.4E-18 110.7 5.2 48 132-179 20-76 (144)
39 4fkx_A NDK B, nucleoside dipho 99.4 6.4E-14 2.2E-18 113.2 4.9 48 132-179 29-85 (161)
40 3js9_A Nucleoside diphosphate 99.4 6.2E-14 2.1E-18 112.6 4.8 48 132-179 27-83 (156)
41 3fkb_A NDP kinase, NDK, nucleo 99.4 6.7E-14 2.3E-18 112.2 4.9 48 132-179 26-82 (155)
42 2vu5_A Nucleoside diphosphate 99.4 6.3E-14 2.2E-18 111.2 4.2 48 132-179 19-75 (148)
43 3q8u_A Nucleoside diphosphate 99.4 9.3E-14 3.2E-18 111.7 5.2 48 132-179 19-75 (157)
44 1s57_A Nucleoside diphosphate 99.4 8.7E-14 3E-18 111.1 4.9 48 132-179 23-79 (153)
45 1pku_A Nucleoside diphosphate 99.4 9.6E-14 3.3E-18 110.5 4.8 48 132-179 20-76 (150)
46 1u8w_A Nucleoside diphosphate 99.4 8.3E-14 2.9E-18 110.7 4.3 48 132-179 19-75 (149)
47 2az3_A Nucleoside diphosphate 99.4 1.4E-13 4.7E-18 111.3 5.2 48 132-179 26-82 (164)
48 3bbb_A Nucleoside diphosphate 99.4 1.3E-13 4.4E-18 109.9 4.9 48 132-179 21-77 (151)
49 1xiq_A Nucleoside diphosphate 99.4 1E-13 3.6E-18 111.3 4.4 48 132-179 27-83 (157)
50 2dxe_A Nucleoside diphosphate 99.4 1.4E-13 4.7E-18 110.7 4.9 48 132-179 25-81 (160)
51 1ehw_A NDPK H4, nucleoside dip 99.4 1.7E-13 5.7E-18 110.7 5.2 48 132-179 42-98 (162)
52 1nb2_A Nucleoside diphosphate 99.4 8.6E-14 2.9E-18 110.8 3.4 48 132-179 20-76 (150)
53 1zs6_A Nucleoside diphosphate 99.4 1.6E-13 5.3E-18 111.4 4.9 48 132-179 39-95 (169)
54 3l7u_A Nucleoside diphosphate 99.4 1.7E-13 5.8E-18 111.8 5.0 48 132-179 42-98 (172)
55 3b54_A NDK, NDP kinase, nucleo 99.4 1.2E-13 4.2E-18 111.3 3.6 48 132-179 31-87 (161)
56 1w7w_A Nucleoside diphosphate 99.4 3.3E-13 1.1E-17 110.8 5.2 48 132-179 50-106 (182)
57 3r9l_A Nucleoside diphosphate 99.4 8.8E-14 3E-18 111.5 1.4 48 132-179 25-81 (155)
58 4dz6_A Nucleoside diphosphate 99.3 1.2E-12 4.1E-17 108.2 2.0 48 132-179 44-105 (190)
59 1xqi_A Nucleoside diphosphate 99.1 1.8E-11 6.3E-16 101.2 1.9 48 132-179 33-122 (195)
60 3bh7_B Protein XRP2; protein-p 98.7 1.2E-08 4.1E-13 90.8 5.2 56 119-179 233-304 (352)
61 1wr1_B Ubiquitin-like protein 89.4 0.5 1.7E-05 31.8 4.3 45 128-174 14-58 (58)
62 2jy5_A Ubiquilin-1; UBA, alter 89.4 0.61 2.1E-05 30.4 4.7 43 129-173 10-52 (52)
63 2knz_A Ubiquilin-4; cytoplasm, 87.7 0.93 3.2E-05 29.5 4.7 45 128-174 8-52 (53)
64 2bwb_A Ubiquitin-like protein 83.1 2.3 8E-05 27.0 4.8 44 127-172 3-46 (46)
65 1ify_A HHR23A, UV excision rep 77.6 3.1 0.00011 26.5 4.0 40 130-172 7-46 (49)
66 1vej_A Riken cDNA 4931431F19; 77.1 3.3 0.00011 29.2 4.3 45 127-173 25-69 (74)
67 2g3q_A Protein YBL047C; endocy 70.6 7 0.00024 23.8 4.2 38 132-172 5-42 (43)
68 2cwb_A Chimera of immunoglobul 70.5 5 0.00017 30.2 4.1 44 129-174 64-107 (108)
69 2dah_A Ubiquilin-3; UBA domain 68.3 4 0.00014 26.7 2.9 42 130-173 8-49 (54)
70 1wji_A Tudor domain containing 62.3 7.9 0.00027 26.0 3.5 38 132-172 10-47 (63)
71 1vg5_A RSGI RUH-014, rhomboid 62.1 11 0.00039 26.2 4.4 40 131-173 29-68 (73)
72 3i5g_C Myosin catalytic light 60.6 6.5 0.00022 29.1 3.1 42 133-174 106-154 (159)
73 1z96_A DNA-damage, UBA-domain 57.9 8.7 0.0003 22.5 2.8 27 131-158 4-30 (40)
74 1wiv_A UBP14, ubiquitin-specif 57.9 12 0.00041 25.7 3.9 40 131-173 29-68 (73)
75 2dna_A Unnamed protein product 53.1 21 0.00071 24.7 4.4 44 128-173 16-59 (67)
76 2cp8_A NEXT to BRCA1 gene 1 pr 50.9 9.5 0.00032 25.5 2.3 30 129-158 7-36 (54)
77 1dv0_A DNA repair protein HHR2 50.5 18 0.00062 22.8 3.5 26 132-158 5-30 (47)
78 2dak_A Ubiquitin carboxyl-term 46.9 13 0.00044 24.6 2.5 37 132-171 10-46 (63)
79 1jb0_J Photosystem 1 reaction 46.8 0.77 2.6E-05 29.5 -3.4 17 163-179 2-18 (41)
80 2ekk_A UBA domain from E3 ubiq 43.0 27 0.00092 21.6 3.4 39 131-173 9-47 (47)
81 1veg_A NEDD8 ultimate buster-1 39.3 26 0.00089 25.0 3.3 37 132-171 30-66 (83)
82 2pd1_A Hypothetical protein; u 37.7 5.6 0.00019 27.2 -0.5 57 106-175 34-90 (104)
83 2wsc_J PSAJ, PSI-J, photosyste 37.2 1 3.5E-05 29.3 -4.0 15 165-179 4-18 (44)
84 2yum_A ZZZ3 protein, zinc fing 36.2 24 0.00082 23.6 2.6 46 107-155 2-57 (75)
85 2yus_A SWI/SNF-related matrix- 35.2 25 0.00087 24.3 2.6 58 100-162 4-69 (79)
86 2cpw_A CBL-interacting protein 33.9 47 0.0016 22.1 3.7 40 132-173 20-59 (64)
87 1x41_A Transcriptional adaptor 32.7 33 0.0011 22.1 2.7 46 108-156 3-53 (60)
88 1whc_A RSGI RUH-027, UBA/UBX 3 25.9 60 0.002 21.5 3.1 24 132-156 10-33 (64)
89 1wgx_A KIAA1903 protein; MYB D 25.0 21 0.00073 24.9 0.8 27 128-157 31-57 (73)
90 2crn_A Ubash3A protein; compac 23.0 51 0.0018 22.0 2.4 14 132-145 10-23 (64)
91 2ovk_C Myosin catalytic light 21.5 79 0.0027 21.9 3.3 43 132-174 105-154 (159)
92 3n75_A LDC, lysine decarboxyla 21.0 2.1E+02 0.0071 27.1 6.9 33 23-55 2-36 (715)
93 2gff_A LSRG protein; dimeric a 20.1 14 0.00048 25.5 -1.0 27 106-132 30-57 (106)
No 1
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=9.9e-36 Score=241.96 Aligned_cols=117 Identities=37% Similarity=0.535 Sum_probs=95.6
Q ss_pred ChhHHHHHHHHHHHHhhcCccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCC
Q psy3715 1 MICTVLHLLYIVIHKIMAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMV 77 (179)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff 77 (179)
||||+++++.--.-.++....||||++||||++++|++|+||++|+.+||+|+++|+.+++.++ ||++|++| |||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~k--pff 78 (169)
T 1zs6_A 1 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRER--PFY 78 (169)
T ss_dssp -----------------CGGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTS--TTH
T ss_pred ChhhHHhHhccCcchhhhhhhccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCC--Cch
Confidence 7899999887655555667789999999999999999999999999999999999999888665 99999999 999
Q ss_pred CCchhhhhhCceE--------EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 78 SSVPAYEISGKLL--------VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 78 ~~l~~~m~sgPvl--------aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
++|++||+|||++ ||++||.|+|+|||.+|.||||||||+.+
T Consensus 79 ~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~ 128 (169)
T 1zs6_A 79 GRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIE 128 (169)
T ss_dssp HHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCS
T ss_pred HHHHHHhcCCCEEEEEEecCCchHHHHHHhCCCCcccCCCCChHHHHcCC
Confidence 9999999999999 89999999999999999999999999874
No 2
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=1.8e-35 Score=235.48 Aligned_cols=97 Identities=25% Similarity=0.421 Sum_probs=93.5
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE-------
Q psy3715 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------- 90 (179)
Q Consensus 21 ~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------- 90 (179)
.||||++||||+++++++|+||++|+.+||+|+++|+.+++.++ ||.+|+++ |||++|++||+|||++
T Consensus 7 ~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~k--pff~~Lv~~mtSGPvva~vleg~ 84 (145)
T 4hr2_A 7 LERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAER--PFFKDLVEFMISGPVMIQVLEGE 84 (145)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTS--TTHHHHHHHHTSSCEEEEEEEEE
T ss_pred HHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcC--chHHHHHHHhcCCCEEEEEEEcC
Confidence 69999999999999999999999999999999999999998776 99999999 9999999999999999
Q ss_pred -EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 -VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 -aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|||||.+|.||||||||+.+
T Consensus 85 ~aV~~~R~l~G~tdp~~A~pgtIR~~fg~~ 114 (145)
T 4hr2_A 85 DAILKNRDLMGATDPKKAEKGTIRADFADS 114 (145)
T ss_dssp THHHHHHHHHCCSSTTTSCTTSHHHHHCSB
T ss_pred CcHhHHhhccCCCCcccCCCCCcHHHhcCC
Confidence 89999999999999999999999999763
No 3
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=6.3e-35 Score=236.08 Aligned_cols=98 Identities=39% Similarity=0.552 Sum_probs=94.1
Q ss_pred ccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE------
Q psy3715 20 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------ 90 (179)
Q Consensus 20 ~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------ 90 (179)
|.||||++||||++++|++|+||++|+.+||+|+++|+.+++.++ ||.+|++| |||++|++||+|||++
T Consensus 10 ~~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~k--pff~~Lv~~mtSGPvvamvleg 87 (161)
T 4fkx_A 10 PSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASK--PFYSGLVSYFSSGPIVGMVWEG 87 (161)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTS--TTHHHHHHHHTSSCEEEEEEES
T ss_pred CcccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCC--ccHHHHHHHHhCCCcEEEEEec
Confidence 589999999999999999999999999999999999999988776 99999999 9999999999999999
Q ss_pred --EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 --VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 --aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|||||.+|.||||||||+.+
T Consensus 88 ~naV~~~R~l~GpTdp~~A~PgTIR~~fg~~ 118 (161)
T 4fkx_A 88 LGVVKGGRVLLGATNPADSLPGTIRGDFAVD 118 (161)
T ss_dssp TTHHHHHHHHHCCSSGGGCCTTSHHHHHCCB
T ss_pred cChHHHHHHHhcCCChhhcCCCChhHhhCCC
Confidence 89999999999999999999999999864
No 4
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.8e-35 Score=237.19 Aligned_cols=109 Identities=39% Similarity=0.520 Sum_probs=96.3
Q ss_pred HHHHHHHhhcCccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhh
Q psy3715 9 LYIVIHKIMAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEI 85 (179)
Q Consensus 9 ~~~~~~~~~~~~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~ 85 (179)
--.|-+..|.+..||||++||||+++++++|+||++|+.+||+|+++|+.+++.++ ||.+|++| |||++|++||+
T Consensus 12 ~~~~~~~~~~~~~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~k--pff~~Lv~~mt 89 (172)
T 3l7u_A 12 SGLVPRGSHMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDR--PFFAGLVKYMH 89 (172)
T ss_dssp ---------CGGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTS--TTHHHHHHHHH
T ss_pred cCCCCchhhcchhceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCC--chHHHHHHHHh
Confidence 34567788999999999999999999999999999999999999999999988776 99999999 99999999999
Q ss_pred hCceE--------EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 86 SGKLL--------VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 86 sgPvl--------aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
|||++ ||++||.|+|||||.+|.||||||||+.+
T Consensus 90 SGPvvamvleg~naV~~~R~l~GpTdp~~A~PgTIR~~fg~~ 131 (172)
T 3l7u_A 90 SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQ 131 (172)
T ss_dssp SSCEEEEEEESTTHHHHHHHHHCCSSTTTCCTTSHHHHHCCC
T ss_pred cCCeEEEEEeCCCHHHHHHHHcCCCChhhcCCCChhHHhcCC
Confidence 99999 89999999999999999999999999864
No 5
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-35 Score=235.65 Aligned_cols=104 Identities=38% Similarity=0.528 Sum_probs=89.6
Q ss_pred HHhhcCccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE
Q psy3715 14 HKIMAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL 90 (179)
Q Consensus 14 ~~~~~~~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl 90 (179)
|..|++..||||++||||+|+++++|+||++|+.+||+|+++|+.+++.++ ||++|++| |||++|++||+|||++
T Consensus 6 ~~~~~~~~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~k--pff~~Lv~~mtSGPvv 83 (161)
T 3b54_A 6 HHHMSSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGK--PFFPKMVSFMKSGPIL 83 (161)
T ss_dssp ----CCCCCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC---------CHHHHHHHHSSCEE
T ss_pred ccccccccceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCC--cchHHHHHHhcCCCEE
Confidence 567999999999999999999999999999999999999999999888766 99999999 9999999999999999
Q ss_pred --------EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 --------VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 --------aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|||||.+|.||||||||+.+
T Consensus 84 amvleg~naV~~~R~l~G~t~p~~a~pgtIR~~fg~~ 120 (161)
T 3b54_A 84 ATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGID 120 (161)
T ss_dssp EEEEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCB
T ss_pred EEEEeccChHHHHHHHhCCCCcccCCCCChHHHhcCC
Confidence 89999999999999999999999999874
No 6
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=1e-34 Score=232.15 Aligned_cols=98 Identities=33% Similarity=0.440 Sum_probs=93.3
Q ss_pred ccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE------
Q psy3715 20 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------ 90 (179)
Q Consensus 20 ~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------ 90 (179)
..||||++||||+++++++|+||++|+.+||+|+++|+.+++.++ ||++|++| |||++|++||+|||++
T Consensus 4 ~~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~k--pff~~Lv~~mtSGPvvamvleg 81 (151)
T 3mpd_A 4 SMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSM--PFFSEMVEDMMSGMVLAMVWVG 81 (151)
T ss_dssp -CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTS--TTHHHHHHHHTSSCEEEEEEES
T ss_pred ceEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCC--ccHHHHHHHhcCCCEEEEEEeC
Confidence 479999999999999999999999999999999999999887776 99999999 9999999999999999
Q ss_pred --EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 --VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 --aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|+|||.+|.||||||||+.+
T Consensus 82 ~naV~~~R~l~G~t~p~~a~PgtiR~~fg~~ 112 (151)
T 3mpd_A 82 KDAVSIGRKLIGETNPQAASVGTIRGDYGVS 112 (151)
T ss_dssp TTHHHHHHHHHCCSSTTTSCTTSHHHHHCCS
T ss_pred CcHHHHHHHHhCCCChhhcCCCChhHHhCCC
Confidence 89999999999999999999999999874
No 7
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=1.3e-34 Score=230.42 Aligned_cols=98 Identities=27% Similarity=0.341 Sum_probs=93.2
Q ss_pred ccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhh-hhhh---hhhhhhhccCCCCCCchhhhhhCceE-----
Q psy3715 20 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWV-SFCV---SFLEKKSACCRMVSSVPAYEISGKLL----- 90 (179)
Q Consensus 20 ~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~-s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl----- 90 (179)
..||||++||||+++++++|+||++|+.+||+|+++|+.++ +.++ ||++|+++ |||++|++||+|||++
T Consensus 5 ~~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~k--pff~~Lv~~mtSGPvva~vle 82 (146)
T 3evo_A 5 GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQ--SYFNDNCDFMVSGPIISIVYE 82 (146)
T ss_dssp -CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTS--TTHHHHHHHHTSSCEEEEEEE
T ss_pred cceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCC--ccHHHHHHHHhcCCeEEEEEe
Confidence 47999999999999999999999999999999999999998 7765 99999999 9999999999999999
Q ss_pred ---EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 ---VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 ---aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|+|||.+|.||||||||+.+
T Consensus 83 g~naV~~~R~l~G~t~p~~A~pgtiR~~fg~~ 114 (146)
T 3evo_A 83 GTDAISKIRRLQGNTNPLASAPGTIRGDLAND 114 (146)
T ss_dssp ETTHHHHHHHHHCCSSTTTCCTTSHHHHHCCS
T ss_pred CCCHHHHHHHHcCCCCcccCCCCChHHHhCCC
Confidence 89999999999999999999999999863
No 8
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=1.6e-34 Score=232.60 Aligned_cols=97 Identities=32% Similarity=0.451 Sum_probs=92.9
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE-------
Q psy3715 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------- 90 (179)
Q Consensus 21 ~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------- 90 (179)
.||||++||||++++|++|+||++|+.+||+|+++|+.+++.++ ||.+|++| |||++|++||+|||++
T Consensus 1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~k--pff~~Lv~~mtSGPvvamvleg~ 78 (157)
T 3q8u_A 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGK--PFYNDLISFITSAPVFAMVVEGE 78 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTS--TTHHHHHHHHTSSCEEEEEEEST
T ss_pred CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCC--ccHHHHHHHhcCCCEEEEEEeCC
Confidence 48999999999999999999999999999999999999888776 99999999 9999999999999999
Q ss_pred -EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 -VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 -aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|||||.+|.||||||||+.+
T Consensus 79 naV~~~R~l~GpTdp~~A~PgtIR~~fg~~ 108 (157)
T 3q8u_A 79 DAVNVSRHIIGSTNPSEASPGSIRGDLGLT 108 (157)
T ss_dssp THHHHHHHHHCCSSTTTSCTTSHHHHHCCB
T ss_pred CHHHHHHHHcCCCChhhcCCCChHHHhCCC
Confidence 89999999999999999999999999863
No 9
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=1.8e-34 Score=226.92 Aligned_cols=97 Identities=33% Similarity=0.557 Sum_probs=92.7
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE-------
Q psy3715 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------- 90 (179)
Q Consensus 21 ~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------- 90 (179)
.||||++||||+++++++|+||++|+.+||+|+++|+.+++.++ ||++|++| |||++|++||+|||++
T Consensus 1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~k--pff~~Lv~~mtsGPvva~vl~g~ 78 (137)
T 1wkj_A 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREK--PFFPGLVRFITSGPVVAMVLEGP 78 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSS--SSHHHHHHHHTSSCEEEEEEEST
T ss_pred CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCC--CchHHHHHHhcCCCEEEEEEeCC
Confidence 38999999999999999999999999999999999999887665 99999999 9999999999999999
Q ss_pred -EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 -VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 -aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|+|||.+|.|||||+||+.+
T Consensus 79 ~aV~~~R~l~G~t~p~~A~pgtiR~~fg~~ 108 (137)
T 1wkj_A 79 GVVAEVRKMMGATHPKDALPGTIRGDFATT 108 (137)
T ss_dssp THHHHHHHHHCCSSTTTCCTTSHHHHHCCC
T ss_pred cHHHHHHHHhCCCCCCcCCCCcchHHhCCC
Confidence 89999999999999999999999999874
No 10
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=99.98 E-value=4.5e-34 Score=229.88 Aligned_cols=98 Identities=38% Similarity=0.554 Sum_probs=93.4
Q ss_pred ccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE------
Q psy3715 20 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------ 90 (179)
Q Consensus 20 ~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------ 90 (179)
..||||++||||++++|++|+||++|+.+||+|+++|+.+++.++ ||++|++| |||++|++||+|||++
T Consensus 8 ~~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~k--pff~~Lv~~mtSGPvvamvleg 85 (157)
T 1xiq_A 8 HMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQ--PFFKNLVAYISKGPVVAMVWEG 85 (157)
T ss_dssp -CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSS--SSCTTHHHHHTTSCEEEEEEES
T ss_pred hhheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCC--CchHHHHHHHcCCCEEEEEEec
Confidence 479999999999999999999999999999999999999988776 99999999 9999999999999999
Q ss_pred --EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 --VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 --aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|+|||.+|.||||||||+.+
T Consensus 86 ~naV~~~R~l~G~T~p~~A~pgtIR~~fg~~ 116 (157)
T 1xiq_A 86 VDMVKQGRKLIGETNPLTSNTGTIRGDFCLE 116 (157)
T ss_dssp TTHHHHHHHHHCCSSTTTSCTTSHHHHHCCB
T ss_pred ccchHHHHHHcCCCCCCcCCCCChHHHhCCC
Confidence 99999999999999999999999999864
No 11
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=99.98 E-value=2e-34 Score=231.48 Aligned_cols=98 Identities=36% Similarity=0.511 Sum_probs=93.9
Q ss_pred ccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE------
Q psy3715 20 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------ 90 (179)
Q Consensus 20 ~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------ 90 (179)
+.||||++||||+++++++|+||++|+.+||+|+++|+.+++.++ ||.+|++| |||++|++||+|||++
T Consensus 7 ~~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~k--pff~~Lv~~mtSGPvvamvleg 84 (155)
T 3fkb_A 7 NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKER--PFFGGLVSFITSGPVVAMVFEG 84 (155)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTS--TTHHHHHHHHTSSCEEEEEEES
T ss_pred ccceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCC--chHHHHHHHhcCCCEEEEEEeC
Confidence 479999999999999999999999999999999999999888776 99999999 9999999999999999
Q ss_pred --EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 --VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 --aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|||||.+|.||||||||+.+
T Consensus 85 ~naV~~~R~l~G~t~p~~a~PgtIR~~fg~~ 115 (155)
T 3fkb_A 85 KGVVASARLMIGVTNPLASAPGSIRGDFGVD 115 (155)
T ss_dssp TTHHHHHHHHHCCSSGGGSCTTSHHHHHCCB
T ss_pred CCHHHHHHHhcCCCChhhcCCCChhHHhCCC
Confidence 89999999999999999999999999863
No 12
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=99.98 E-value=3e-34 Score=225.37 Aligned_cols=98 Identities=28% Similarity=0.439 Sum_probs=93.5
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE-------
Q psy3715 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------- 90 (179)
Q Consensus 21 ~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------- 90 (179)
.||||++||||+++++++|+||++|+.+||+|+++|+.+++.++ ||.+|++| |||++|++||+|||++
T Consensus 2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~k--pff~~Lv~~mtSGPvva~vl~g~ 79 (136)
T 1k44_A 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGK--PFFGSLLEFITSGPVVAAIVEGT 79 (136)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTS--TTHHHHHHHTTTSCEEEEEEEET
T ss_pred ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCC--CchHHHHHHhccCCEEEEEEeCC
Confidence 59999999999999999999999999999999999999888665 99999999 9999999999999999
Q ss_pred -EEeeehhhccCCCCC-CCCCCceeeeccccc
Q psy3715 91 -VGITYSTVLGHLNLE-TSECPLFHIDYELFP 120 (179)
Q Consensus 91 -aV~~~R~mlG~TnP~-~A~pGTIRgdF~~~~ 120 (179)
||++||.|+|+|||. +|.|||||+||+.+.
T Consensus 80 ~aV~~~R~l~G~t~p~~~A~pgtiR~~fg~~~ 111 (136)
T 1k44_A 80 RAIAAVRQLAGGTDPVQAAAPGTIRGDFALET 111 (136)
T ss_dssp THHHHHHHHHCCSSTTTTSCTTSHHHHHCCCS
T ss_pred CHHHHHHHHhCCCCccccCCCCCcHHHhcCCc
Confidence 899999999999999 999999999998753
No 13
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=99.98 E-value=3.4e-34 Score=226.67 Aligned_cols=97 Identities=28% Similarity=0.457 Sum_probs=92.9
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE-------
Q psy3715 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------- 90 (179)
Q Consensus 21 ~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------- 90 (179)
.||||++||||+++++++|+||++|+.+||+|+++|+.+++.++ ||++|++| |||++|++||+|||++
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~k--pff~~Lv~~mtSGPvva~vl~g~ 79 (142)
T 2hur_A 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGK--PFFDGLVEFMTSGPIVVSVLEGE 79 (142)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTS--TTHHHHHHHHTSSCEEEEEEEEE
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCC--CchHHHHHHhcCCCEEEEEEecc
Confidence 49999999999999999999999999999999999999888766 99999999 9999999999999999
Q ss_pred -EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 -VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 -aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|+|||.+|.|||||+||+.+
T Consensus 80 ~aV~~~R~l~G~t~p~~A~pgtiR~~fg~~ 109 (142)
T 2hur_A 80 NAVQRHRDLLGATNPANALAGTLRADYADS 109 (142)
T ss_dssp THHHHHHHHHCCSSTTTSCTTSHHHHHCSS
T ss_pred cHHHHHHHHhCCCCcccCCCCcchHHhCCC
Confidence 89999999999999999999999999874
No 14
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=99.98 E-value=4e-34 Score=229.76 Aligned_cols=97 Identities=41% Similarity=0.582 Sum_probs=70.8
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE-------
Q psy3715 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------- 90 (179)
Q Consensus 21 ~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------- 90 (179)
.||||++||||+++++++|+||++|+.+||+|+++|+.+++.++ ||.+|++| |||++|++||+|||++
T Consensus 7 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~k--pff~~Lv~~mtSGPvvamvleg~ 84 (155)
T 3r9l_A 7 RERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAAR--PFFAGLCKFLSSGPVCAMVWEGA 84 (155)
T ss_dssp SCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC-----------------------------CCSCCEEEEEEST
T ss_pred hheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCC--ccHHHHHHHhcCCCEEEEEEeCC
Confidence 69999999999999999999999999999999999999988776 99999999 9999999999999999
Q ss_pred -EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 -VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 -aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|||||.+|.||||||||+.+
T Consensus 85 naV~~~R~l~G~t~p~~a~PgtIR~~fg~~ 114 (155)
T 3r9l_A 85 NVVSISRTMMGVTKPAESAPGTIRGDFGID 114 (155)
T ss_dssp THHHHHHHHHCCSCTTTCCTTSHHHHHCCS
T ss_pred CHHHHHHHhcCCCChhhcCCCChhHHhCCC
Confidence 89999999999999999999999999864
No 15
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=99.98 E-value=3.5e-34 Score=227.19 Aligned_cols=97 Identities=29% Similarity=0.505 Sum_probs=92.8
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE-------
Q psy3715 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------- 90 (179)
Q Consensus 21 ~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------- 90 (179)
.||||++||||++++|++|+||++|+.+||+|+++|+.+++.++ ||.+|++| |||++|++||+|||++
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~k--pff~~Lv~~mtSGPvva~vl~g~ 79 (144)
T 1nhk_R 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKAR--PFFKDLVQFMISGPVVLMVLEGE 79 (144)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTS--TTHHHHHHHHTSSCEEEEEEEEE
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCC--CchHHHHHHhccCCEEEEEEecc
Confidence 49999999999999999999999999999999999999887766 99999999 9999999999999999
Q ss_pred -EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 -VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 -aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|+|||.+|.||||||||+.+
T Consensus 80 ~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~ 109 (144)
T 1nhk_R 80 NAVLANRDIMGATNPAQAAEGTIRKDFATS 109 (144)
T ss_dssp THHHHHHHHHCCSSGGGCCTTSHHHHHCCS
T ss_pred CHHHHHHHHhCCCCCCcCCCCcchHHhCCC
Confidence 89999999999999999999999999863
No 16
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=99.98 E-value=3.4e-34 Score=227.96 Aligned_cols=97 Identities=32% Similarity=0.534 Sum_probs=92.8
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE-------
Q psy3715 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------- 90 (179)
Q Consensus 21 ~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------- 90 (179)
.||||++||||+++++++|+||++|+.+||+|+++|+.+++.++ ||++|++| |||++|++||+|||++
T Consensus 1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~k--pff~~Lv~~mtSGPvva~vleg~ 78 (148)
T 2vu5_A 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEK--PFFGELVDFITSGPVFAMVWQGE 78 (148)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTC--THHHHHHHHHTTCCEEEEEEEST
T ss_pred CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCC--CchHHHHHHhcCCCEEEEEEecc
Confidence 48999999999999999999999999999999999999888766 99999999 9999999999999999
Q ss_pred -EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 -VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 -aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|+|||.+|.||||||||+.+
T Consensus 79 ~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~ 108 (148)
T 2vu5_A 79 GVVDTARNMMGKTRPHEAAPGTIRGDFGVT 108 (148)
T ss_dssp THHHHHHHHHCCSSTTTSCTTSHHHHHCCC
T ss_pred ChHHHHHHHhCCCCccccCCCChHHHhcCC
Confidence 89999999999999999999999999874
No 17
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=99.98 E-value=5.3e-34 Score=228.14 Aligned_cols=98 Identities=32% Similarity=0.525 Sum_probs=93.4
Q ss_pred ccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE------
Q psy3715 20 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------ 90 (179)
Q Consensus 20 ~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------ 90 (179)
..||||++||||++++|++|+||++|+.+||+|+++|+.+++.++ ||++|++| |||++|++||+|||++
T Consensus 4 ~~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~k--pff~~Lv~~mtSGPvvamvleg 81 (153)
T 1s57_A 4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAK--SFFPNLIEYITSGPVVCMAWEG 81 (153)
T ss_dssp CCEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTS--SSHHHHHHHHTSSCEEEEEEEE
T ss_pred ccceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCC--CcchhHHHHhcCCCEEEEEEec
Confidence 369999999999999999999999999999999999999887766 99999999 9999999999999999
Q ss_pred --EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 --VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 --aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|+|||.+|.||||||||+.+
T Consensus 82 ~~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~ 112 (153)
T 1s57_A 82 VGVVASARKLIGKTDPLQAEPGTIRGDLAVQ 112 (153)
T ss_dssp TTHHHHHHHHHCCSSTTTSCTTSHHHHHCCB
T ss_pred ccHHHHHHHHhCCCCccccCCcchHHHhcCC
Confidence 89999999999999999999999999864
No 18
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=99.98 E-value=4.4e-34 Score=228.15 Aligned_cols=98 Identities=44% Similarity=0.606 Sum_probs=93.2
Q ss_pred ccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE------
Q psy3715 20 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------ 90 (179)
Q Consensus 20 ~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------ 90 (179)
..||||++||||+++++++|+||++|+.+||+|+++|+.+++.++ ||++|++| |||++|++||+|||++
T Consensus 2 ~~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~k--pff~~Lv~~mtSGPvvamvleg 79 (151)
T 3bbb_A 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDR--PFFPGLVKYMNSGPVVAMVWEG 79 (151)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTS--TTHHHHHHHHTSSCEEEEEEES
T ss_pred CcceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCC--CchHHHHHHHccCCEEEEEEec
Confidence 469999999999999999999999999999999999999887655 99999999 9999999999999999
Q ss_pred --EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 --VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 --aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|+|||.+|.||||||||+.+
T Consensus 80 ~~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~ 110 (151)
T 3bbb_A 80 LNVVKTGRVMLGETNPADSKPGTIRGDFCIQ 110 (151)
T ss_dssp TTHHHHHHHHHCCSSGGGCCTTSHHHHHCCB
T ss_pred CCHHHHHHHHhCCCCcccCCCCCcHHHhcCC
Confidence 89999999999999999999999999863
No 19
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=99.98 E-value=4.3e-34 Score=228.05 Aligned_cols=97 Identities=37% Similarity=0.577 Sum_probs=92.9
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE-------
Q psy3715 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------- 90 (179)
Q Consensus 21 ~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------- 90 (179)
.||||++||||+++++++|+||++|+.+||+|+++|+.+++.++ ||.+|++| |||++|++||+|||++
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~k--pff~~Lv~~mtSGPvva~vleg~ 79 (150)
T 1pku_A 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDK--PFFPGLVEYIISGPVVAMVWEGK 79 (150)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTS--TTHHHHHHHHHSSCEEEEEEEST
T ss_pred ceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCC--CccHHHHHHhcCCCEEEEEEecc
Confidence 59999999999999999999999999999999999999888655 99999999 9999999999999999
Q ss_pred -EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 -VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 -aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|+|||.+|.||||||||+.+
T Consensus 80 ~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~ 109 (150)
T 1pku_A 80 DVVATGRRIIGATRPWEAAPGTIRADYAVE 109 (150)
T ss_dssp THHHHHHHHHCCSSGGGSCTTSHHHHHCSB
T ss_pred chHHHHHHHhCCCCcccCCCCChHHHhCCC
Confidence 89999999999999999999999999874
No 20
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=99.97 E-value=5.8e-34 Score=230.59 Aligned_cols=101 Identities=31% Similarity=0.547 Sum_probs=93.7
Q ss_pred hhcCccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE--
Q psy3715 16 IMAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL-- 90 (179)
Q Consensus 16 ~~~~~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl-- 90 (179)
.|+...||||++||||+|+++++|+||++|+.+||+|+++|+.+++.++ ||++|++| |||++|++||+|||++
T Consensus 3 ~l~~~~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~k--pff~~Lv~~mtSGPvvam 80 (164)
T 2az3_A 3 HMTDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDK--PFFDGLVSFITSGPVFAM 80 (164)
T ss_dssp ----CCCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTS--TTHHHHHHHHTSSCEEEE
T ss_pred cccCccceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCC--cchHHHHHHHcCCCEEEE
Confidence 4667789999999999999999999999999999999999999888766 99999999 9999999999999999
Q ss_pred ------EEeeehhhccCCCCCCCCCCceeeeccc
Q psy3715 91 ------VGITYSTVLGHLNLETSECPLFHIDYEL 118 (179)
Q Consensus 91 ------aV~~~R~mlG~TnP~~A~pGTIRgdF~~ 118 (179)
||++||.|+|+|||.+|.|||||+||+.
T Consensus 81 vleg~~aV~~~R~l~G~t~p~~a~pgtIR~~fg~ 114 (164)
T 2az3_A 81 VWEGADATRQVRQLMGATDAQDAAPGTIRGDYGN 114 (164)
T ss_dssp EEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCC
T ss_pred EEccccHHHHHHHHhCCCCccccCCCcchhhhcc
Confidence 8999999999999999999999999976
No 21
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=99.97 E-value=5.6e-34 Score=227.16 Aligned_cols=97 Identities=38% Similarity=0.598 Sum_probs=92.8
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE-------
Q psy3715 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------- 90 (179)
Q Consensus 21 ~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------- 90 (179)
.||||++||||++++|++|+||++|+.+||+|+++|+.+++.++ ||++|++| |||++|++||+|||++
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~k--pff~~Lv~~mtSGPvva~vleg~ 78 (149)
T 1u8w_A 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSK--SFFSGLVDYIVSGPVVAMIWEGK 78 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSS--TTHHHHHHHHTSSCEEEEEEEST
T ss_pred CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCC--CcchhHHhHhcCCCEEEEEEecC
Confidence 38999999999999999999999999999999999999888766 99999999 9999999999999999
Q ss_pred -EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 -VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 -aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|+|||.+|.||||||||+.+
T Consensus 79 ~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~ 108 (149)
T 1u8w_A 79 NVVLTGRKIIGATNPAASEPGTIRGDFAID 108 (149)
T ss_dssp THHHHHHHHHCCSSTTTCCTTSHHHHHCCS
T ss_pred CchHHHHHHhCCCCcccCCCCCcHHHHCCC
Confidence 89999999999999999999999999874
No 22
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=99.97 E-value=5.9e-34 Score=229.46 Aligned_cols=99 Identities=29% Similarity=0.507 Sum_probs=94.3
Q ss_pred ccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE------
Q psy3715 20 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------ 90 (179)
Q Consensus 20 ~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------ 90 (179)
+.||||++||||+++++++|+||++|+.+||+|+++|+.+++.++ ||++|++| |||++|++||+|||++
T Consensus 6 ~~erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~k--pff~~Lv~~mtSGPvvamvleg 83 (160)
T 2dxe_A 6 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREK--PFFKALIDYITKTPVVVMVLEG 83 (160)
T ss_dssp CEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTS--TTHHHHHHHHTSSCEEEEEEEE
T ss_pred cCCeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCC--CchHHHHHHhcCCCEEEEEEec
Confidence 479999999999999999999999999999999999999887665 99999999 9999999999999999
Q ss_pred --EEeeehhhccCCCCCCCCCCceeeeccccc
Q psy3715 91 --VGITYSTVLGHLNLETSECPLFHIDYELFP 120 (179)
Q Consensus 91 --aV~~~R~mlG~TnP~~A~pGTIRgdF~~~~ 120 (179)
||++||.|+|||||.+|.||||||||+.+.
T Consensus 84 ~~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~ 115 (160)
T 2dxe_A 84 RYAVEVVRKMAGATDPKDAAPGTIRGDFGLEV 115 (160)
T ss_dssp ETHHHHHHHHHCCSSGGGSCTTSHHHHHCCCC
T ss_pred cCHHHHHHHHhCCCCCCcCCCCChHHHhcCCc
Confidence 899999999999999999999999998765
No 23
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=99.97 E-value=6e-34 Score=227.21 Aligned_cols=97 Identities=36% Similarity=0.524 Sum_probs=92.9
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE-------
Q psy3715 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------- 90 (179)
Q Consensus 21 ~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------- 90 (179)
.||||++||||+++++++|+||++|+.+||+|+++|+.+++.++ ||.+|++| |||++|++||+|||++
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~k--pff~~Lv~~mtSGPvva~vl~g~ 79 (150)
T 1nb2_A 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGG--PFFGGLVGGATSGPVFAMVWEGL 79 (150)
T ss_dssp CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSS--TTHHHHHHHHTSSCCBEEEEEST
T ss_pred ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCC--CchHHHHHHhcCCCEEEEEEecC
Confidence 59999999999999999999999999999999999999988665 99999999 9999999999999999
Q ss_pred -EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 -VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 -aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|+|||.+|.||||||||+.+
T Consensus 80 naV~~~R~l~G~t~p~~a~pgtIR~~fg~~ 109 (150)
T 1nb2_A 80 NAAATARQILGATNPSDAAPGTIRGDFGVS 109 (150)
T ss_dssp THHHHHHHHHCCSSTTSSCTTSHHHHSCSC
T ss_pred CHHHHHHHHhCCCCcccCCCCChHHHhcCC
Confidence 89999999999999999999999999874
No 24
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=99.97 E-value=3.8e-34 Score=226.38 Aligned_cols=97 Identities=20% Similarity=0.382 Sum_probs=93.1
Q ss_pred cceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE-------
Q psy3715 21 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------- 90 (179)
Q Consensus 21 ~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------- 90 (179)
.||||++||||+++++++|+||++|+.+||+|+++|+.+++.++ ||.+|+++ |||++|++||+|||++
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~k--pff~~Lv~~mtSGPvva~vl~g~ 80 (142)
T 3ztp_A 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRER--PFFQELVEFMSSGPVVAAVLEGE 80 (142)
T ss_dssp EEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTS--TTHHHHHHHHTSSCEEEEEEEEE
T ss_pred cceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCC--chHHHHHHHhcCCCEEEEEEeCC
Confidence 69999999999999999999999999999999999999988776 99999999 9999999999999999
Q ss_pred -EEeeehhhccCCCCCCC---CCCceeeecccc
Q psy3715 91 -VGITYSTVLGHLNLETS---ECPLFHIDYELF 119 (179)
Q Consensus 91 -aV~~~R~mlG~TnP~~A---~pGTIRgdF~~~ 119 (179)
||++||.|+|||||.+| .||||||||+.+
T Consensus 81 naV~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~ 113 (142)
T 3ztp_A 81 DAIKRVREIIGPTDSEEARKVAPNSIRAQFGTD 113 (142)
T ss_dssp THHHHHHHHHCCSSHHHHHHHCTTSHHHHHCCS
T ss_pred CHHHHHHHhcCCCCHHHhhhcCCCChHHHhCCC
Confidence 89999999999999999 999999999863
No 25
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=99.97 E-value=1.1e-33 Score=228.85 Aligned_cols=98 Identities=32% Similarity=0.552 Sum_probs=93.7
Q ss_pred ccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE------
Q psy3715 20 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------ 90 (179)
Q Consensus 20 ~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------ 90 (179)
..||||++||||+++++++|+||++|+.+||+|+++|+.+++.++ ||++|++| |||++|++||+|||++
T Consensus 23 ~~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~k--pff~~Lv~~mtSGPvvamvleg 100 (162)
T 1ehw_A 23 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRK--PFYPALIRYMSSGPVVAMVWEG 100 (162)
T ss_dssp GGCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTS--TTHHHHHHHHTSSCEEEEEEES
T ss_pred hhceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCC--cchHHHHHHHcCCCEEEEEEec
Confidence 469999999999999999999999999999999999999888766 99999999 9999999999999999
Q ss_pred --EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 --VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 --aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|||||.+|.|||||+||+.+
T Consensus 101 ~naV~~~R~l~G~T~p~~A~PgtIR~~fg~~ 131 (162)
T 1ehw_A 101 YNVVRASRAMIGHTDSAEAAPGTIRGDFSVH 131 (162)
T ss_dssp TTHHHHHHHHHCCSSGGGSCTTSHHHHHCCC
T ss_pred hhHHHHHHHHhCCCCCCCCCCCChHHHhCCC
Confidence 89999999999999999999999999874
No 26
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=99.97 E-value=1.2e-33 Score=227.27 Aligned_cols=98 Identities=34% Similarity=0.526 Sum_probs=93.6
Q ss_pred ccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE------
Q psy3715 20 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL------ 90 (179)
Q Consensus 20 ~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl------ 90 (179)
..|||.++||||+|++|++|+||++|+.+||+|+++|+.+++.++ ||++|++| |||++|++||+|||++
T Consensus 8 ~~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~k--pff~~Lv~fmtSGPvvamvleg 85 (156)
T 3js9_A 8 HMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDK--PFFKDLCDFISHGPVFCMIWEG 85 (156)
T ss_dssp -CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTS--TTHHHHHHHHHHCCEEEEEEEE
T ss_pred chhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCC--ccHHHHHHHHhcCCCEEEEEec
Confidence 479999999999999999999999999999999999999998877 99999999 9999999999999999
Q ss_pred --EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 --VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 --aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|+|||.+|.||||||||+.+
T Consensus 86 ~naV~~~R~l~G~T~p~~A~PgTIR~~fg~~ 116 (156)
T 3js9_A 86 PEAIKIGRNLVGLTSPVESAAGTIRGDFGVV 116 (156)
T ss_dssp TTHHHHHHHHHCCSSGGGSCTTSHHHHHCCS
T ss_pred cchHHHHHHhcCCCCccccCCCCHHHHhCCC
Confidence 89999999999999999999999999864
No 27
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=99.97 E-value=2.1e-33 Score=230.87 Aligned_cols=103 Identities=32% Similarity=0.440 Sum_probs=94.9
Q ss_pred HhhcCccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE-
Q psy3715 15 KIMAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL- 90 (179)
Q Consensus 15 ~~~~~~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl- 90 (179)
...+...||||++||||+++++++|+||++|+.+||+|+++|+.+++.++ ||++|++| |||++|++||+|||++
T Consensus 26 ~~~~~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~k--pff~~Lv~~mtSGPvva 103 (182)
T 1w7w_A 26 MDPEAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKER--PFFNGLCDFLSSGPVIA 103 (182)
T ss_dssp ----CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTS--TTHHHHHHHHTSSCEEE
T ss_pred ccccchhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCC--cchHHHHHHHcCCCEEE
Confidence 34566789999999999999999999999999999999999999888766 99999999 9999999999999999
Q ss_pred -------EEeeehhhccCCCCCCCCCCceeeecccc
Q psy3715 91 -------VGITYSTVLGHLNLETSECPLFHIDYELF 119 (179)
Q Consensus 91 -------aV~~~R~mlG~TnP~~A~pGTIRgdF~~~ 119 (179)
||++||.|+|||||.+|.||||||||+.+
T Consensus 104 mvleG~naV~~~R~l~G~T~p~~A~PgTIR~~fg~~ 139 (182)
T 1w7w_A 104 MVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVV 139 (182)
T ss_dssp EEEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCS
T ss_pred EEEecccHHHHHHHHhCCCCCCCCCCCChHHHhCCC
Confidence 89999999999999999999999999874
No 28
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=99.97 E-value=1.8e-33 Score=232.81 Aligned_cols=103 Identities=24% Similarity=0.390 Sum_probs=96.4
Q ss_pred hhcCccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhh-----hhhhccCCCCCCchhhhhhC
Q psy3715 16 IMAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFL-----EKKSACCRMVSSVPAYEISG 87 (179)
Q Consensus 16 ~~~~~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~-----ehkdk~~~Ff~~l~~~m~sg 87 (179)
.|+...||||++||||+|+++++|+||++|+.+||+|+++|+.+++.++ ||. +|++| |||++|++||+||
T Consensus 21 ~~~~~~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~k--pff~~Lv~~mtSG 98 (190)
T 4dz6_A 21 SMSMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSE--AVWNSLIKFISNS 98 (190)
T ss_dssp --CTTEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCH--HHHHHHHHHHTTS
T ss_pred cccchhhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCc--cHHHHHHHHhcCC
Confidence 4666789999999999999999999999999999999999999988776 999 99999 9999999999999
Q ss_pred ceE--------EEeeehhhccCCCCCCCCCCceeeeccccc
Q psy3715 88 KLL--------VGITYSTVLGHLNLETSECPLFHIDYELFP 120 (179)
Q Consensus 88 Pvl--------aV~~~R~mlG~TnP~~A~pGTIRgdF~~~~ 120 (179)
|++ ||++||+|+|+|||.+|.||||||||+.+.
T Consensus 99 PvvamvleG~naV~~~R~l~GpTdP~~A~PgTIRg~fg~~~ 139 (190)
T 4dz6_A 99 PVFTFVVEGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHS 139 (190)
T ss_dssp EEEEEEEEEETHHHHHHHHHCCSSGGGSCTTSHHHHHCCCC
T ss_pred CEEEEEEecCCHHHHHHHHcCCCChhhcCCCChHHHhcCCh
Confidence 999 899999999999999999999999998765
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=99.96 E-value=8.2e-32 Score=223.13 Aligned_cols=99 Identities=30% Similarity=0.425 Sum_probs=94.5
Q ss_pred ccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hh-------------h----------------
Q psy3715 20 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SF-------------L---------------- 67 (179)
Q Consensus 20 ~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY-------------~---------------- 67 (179)
..||||++||||+|+++++|+||++|+.+||+|+++|+++++.++ || +
T Consensus 14 ~~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 93 (195)
T 1xqi_A 14 PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIG 93 (195)
T ss_dssp CCCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHS
T ss_pred hhhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhc
Confidence 469999999999999999999999999999999999999888776 99 8
Q ss_pred ----hhhhccCCCCCCchhhhhhCceE--------EEeeehhhccCCCCCCCCCCceeeeccccc
Q psy3715 68 ----EKKSACCRMVSSVPAYEISGKLL--------VGITYSTVLGHLNLETSECPLFHIDYELFP 120 (179)
Q Consensus 68 ----ehkdk~~~Ff~~l~~~m~sgPvl--------aV~~~R~mlG~TnP~~A~pGTIRgdF~~~~ 120 (179)
+|+++ +||++|++||+|||++ ||++||.|+|||||.+|.||||||||+.+.
T Consensus 94 ~~~~~~~gk--~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A~pgTIRg~fg~~~ 156 (195)
T 1xqi_A 94 TDDPVEVGR--IIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDS 156 (195)
T ss_dssp CCCHHHHHH--HHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSCTTSHHHHHCCCC
T ss_pred cccchhcCC--cchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcCCCCchhHhhcCch
Confidence 99999 9999999999999999 899999999999999999999999999765
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.82 E-value=1.1e-21 Score=174.37 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=86.0
Q ss_pred CccceEEEEEcCccccCCchHHHHHHHHHcCcEEEEeehhhhhhhh---hhhhhhhccCCCCCCchhhhhhCceE-----
Q psy3715 19 EPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWVSFCV---SFLEKKSACCRMVSSVPAYEISGKLL----- 90 (179)
Q Consensus 19 ~~~erTl~~IKPD~~~~g~~g~Ii~~~~~~G~kiv~~K~~~~s~~~---hY~ehkdk~~~Ff~~l~~~m~sgPvl----- 90 (179)
...||||++||||+|+++++|+||++|+.+||+|+++|+.+++.++ ||++|+ ++|++||+|||++
T Consensus 233 ~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-------~~Lv~~mtsGPvva~vle 305 (352)
T 3bh7_B 233 SSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-------PDFLPLLNKGPVIALEFN 305 (352)
T ss_dssp SCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-------GGTGGGGGGSCEEEEEEE
T ss_pred ccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-------HHHHHHhccCCEEEEEEE
Confidence 3479999999999999999999999999999999999999988776 999999 5699999999999
Q ss_pred ---EEeeehhhccCCCCCCCCCCceeeecccccchhh
Q psy3715 91 ---VGITYSTVLGHLNLETSECPLFHIDYELFPAERQ 124 (179)
Q Consensus 91 ---aV~~~R~mlG~TnP~~A~pGTIRgdF~~~~ae~~ 124 (179)
||++||.|+|+|||. +.+||.=+.+.|+|+
T Consensus 306 G~~av~~~R~l~g~t~pg----N~vHgSds~esA~~E 338 (352)
T 3bh7_B 306 GDGAVEVCQLIVNEIFNG----TKMFVSESKETASGD 338 (352)
T ss_dssp STTHHHHHHHHHHHHCTT----SCEEECSCHHHHHHH
T ss_pred CcCHHHHHHHHhcCCCCC----ceEEecCCHHHHHHH
Confidence 899999999999994 778877777777773
No 31
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=99.46 E-value=3.8e-14 Score=112.66 Aligned_cols=48 Identities=31% Similarity=0.466 Sum_probs=46.3
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+|+.+++++|| +|++.|++||.+|++||||++||+||+|||+++|||
T Consensus 25 g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vl 81 (145)
T 4hr2_A 25 GQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVL 81 (145)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEE
Confidence 489999999999 999999999999999999999999999999999996
No 32
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=99.45 E-value=4.5e-14 Score=110.59 Aligned_cols=48 Identities=35% Similarity=0.630 Sum_probs=46.3
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.++++.|| +|+++|++||.+|++||||++||+||+|||+++|||
T Consensus 20 g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl 76 (136)
T 1k44_A 20 GEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIV 76 (136)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEE
Confidence 589999999999 999999999999999999999999999999999997
No 33
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=99.45 E-value=4.5e-14 Score=112.72 Aligned_cols=48 Identities=40% Similarity=0.666 Sum_probs=46.2
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|++.|++||++|++||||++||+||+|||+++|||
T Consensus 23 g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvl 79 (151)
T 3mpd_A 23 SRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVW 79 (151)
T ss_dssp HHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEE
Confidence 588999999999 999999999999999999999999999999999996
No 34
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=99.45 E-value=5.6e-14 Score=111.62 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=46.2
Q ss_pred hhhhhhhhhcCC---------C-CHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------P-SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~-s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| + |++.|++||++|++||||++||+||+|||+++|||
T Consensus 24 g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl 81 (146)
T 3evo_A 24 AEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVY 81 (146)
T ss_dssp HHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEE
Confidence 489999999999 8 99999999999999999999999999999999997
No 35
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=99.44 E-value=6e-14 Score=110.67 Aligned_cols=48 Identities=33% Similarity=0.463 Sum_probs=46.3
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|++.|++||++|++||||++||+||+|||+++|||
T Consensus 21 g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl 77 (142)
T 3ztp_A 21 GKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVL 77 (142)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEE
Confidence 589999999999 999999999999999999999999999999999996
No 36
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=99.44 E-value=5.4e-14 Score=110.25 Aligned_cols=48 Identities=44% Similarity=0.777 Sum_probs=46.2
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|++.|++||++|++||||++||+||+|||+++|||
T Consensus 19 g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl 75 (137)
T 1wkj_A 19 GEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVL 75 (137)
T ss_dssp HHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEE
Confidence 588999999999 999999999999999999999999999999999997
No 37
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=99.44 E-value=6.7e-14 Score=110.40 Aligned_cols=48 Identities=33% Similarity=0.556 Sum_probs=46.2
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|++.|++||++|++||||++||+||+|||+++|||
T Consensus 20 g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl 76 (142)
T 2hur_A 20 GNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVL 76 (142)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEE
Confidence 589999999999 999999999999999999999999999999999997
No 38
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=99.44 E-value=6.9e-14 Score=110.67 Aligned_cols=48 Identities=35% Similarity=0.524 Sum_probs=46.3
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|++.|++||.+|++||||++||+||+|||+++|||
T Consensus 20 g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl 76 (144)
T 1nhk_R 20 GKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVL 76 (144)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEE
Confidence 589999999999 999999999999999999999999999999999996
No 39
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=99.44 E-value=6.4e-14 Score=113.15 Aligned_cols=48 Identities=54% Similarity=0.850 Sum_probs=46.2
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|++.|++||++|++||||++||+||+|||+++|||
T Consensus 29 GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvl 85 (161)
T 4fkx_A 29 GEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVW 85 (161)
T ss_dssp HHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEEE
Confidence 588999999999 999999999999999999999999999999999997
No 40
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=99.44 E-value=6.2e-14 Score=112.58 Aligned_cols=48 Identities=33% Similarity=0.633 Sum_probs=46.3
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+|+.+++++|| +|+++|++||++|++||||++||+||+|||+++|||
T Consensus 27 GeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvl 83 (156)
T 3js9_A 27 GEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIW 83 (156)
T ss_dssp HHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEE
Confidence 589999999999 999999999999999999999999999999999996
No 41
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=99.44 E-value=6.7e-14 Score=112.20 Aligned_cols=48 Identities=38% Similarity=0.728 Sum_probs=46.2
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|++.|++||++|++||||++||+||+|||+++|||
T Consensus 26 g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvl 82 (155)
T 3fkb_A 26 GEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVF 82 (155)
T ss_dssp HHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEE
Confidence 588999999999 999999999999999999999999999999999996
No 42
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=99.43 E-value=6.3e-14 Score=111.22 Aligned_cols=48 Identities=35% Similarity=0.618 Sum_probs=46.1
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|+++|++||++|++||||++||+||+|||+++|||
T Consensus 19 g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl 75 (148)
T 2vu5_A 19 GEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVW 75 (148)
T ss_dssp HHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEE
Confidence 588899999999 999999999999999999999999999999999996
No 43
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=99.43 E-value=9.3e-14 Score=111.65 Aligned_cols=48 Identities=29% Similarity=0.553 Sum_probs=46.2
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|++.|++||++|++||||++||+||+|||+++|||
T Consensus 19 G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvl 75 (157)
T 3q8u_A 19 GEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVV 75 (157)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEE
Confidence 588999999999 999999999999999999999999999999999996
No 44
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=99.42 E-value=8.7e-14 Score=111.07 Aligned_cols=48 Identities=40% Similarity=0.706 Sum_probs=46.2
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+|+.+++++|| +|+++|++||.+|++||||++||+||+|||+++|||
T Consensus 23 g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvl 79 (153)
T 1s57_A 23 GEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAW 79 (153)
T ss_dssp HHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEE
Confidence 579999999999 999999999999999999999999999999999996
No 45
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=99.42 E-value=9.6e-14 Score=110.50 Aligned_cols=48 Identities=46% Similarity=0.802 Sum_probs=46.0
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|+++|++||.+|++||||++||+||+|||+++|||
T Consensus 20 g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl 76 (150)
T 1pku_A 20 GDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVW 76 (150)
T ss_dssp HHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEE
Confidence 478999999999 999999999999999999999999999999999996
No 46
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=99.42 E-value=8.3e-14 Score=110.74 Aligned_cols=48 Identities=38% Similarity=0.678 Sum_probs=46.0
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|++.|++||.+|++||||++||+||+|||+++|||
T Consensus 19 g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vl 75 (149)
T 1u8w_A 19 GEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIW 75 (149)
T ss_dssp HHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEE
Confidence 478999999999 999999999999999999999999999999999996
No 47
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=99.41 E-value=1.4e-13 Score=111.28 Aligned_cols=48 Identities=42% Similarity=0.724 Sum_probs=46.2
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|+++|++||.+|++||||++||+||+|||+++|||
T Consensus 26 GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvl 82 (164)
T 2az3_A 26 GDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVW 82 (164)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEE
Confidence 588999999999 999999999999999999999999999999999997
No 48
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=99.41 E-value=1.3e-13 Score=109.85 Aligned_cols=48 Identities=60% Similarity=0.932 Sum_probs=46.0
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|++.|++||.+|.+||||++||+||+|||+++|||
T Consensus 21 g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvl 77 (151)
T 3bbb_A 21 GEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVW 77 (151)
T ss_dssp HHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEE
Confidence 588899999999 999999999999999999999999999999999996
No 49
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=99.41 E-value=1e-13 Score=111.29 Aligned_cols=48 Identities=50% Similarity=0.865 Sum_probs=46.2
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+|+.+++++|| +|+++|++||.+|++||||++||+||+|||+++|||
T Consensus 27 GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvl 83 (157)
T 1xiq_A 27 GTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVW 83 (157)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEE
Confidence 479999999999 999999999999999999999999999999999996
No 50
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=99.41 E-value=1.4e-13 Score=110.72 Aligned_cols=48 Identities=33% Similarity=0.594 Sum_probs=46.2
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|++.|++||++|++||||++||+||+|||+++|||
T Consensus 25 G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvl 81 (160)
T 2dxe_A 25 GEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVL 81 (160)
T ss_dssp HHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEE
Confidence 588999999999 999999999999999999999999999999999996
No 51
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=99.40 E-value=1.7e-13 Score=110.70 Aligned_cols=48 Identities=46% Similarity=0.834 Sum_probs=46.3
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|+++|++||++|++||||++||+||+|||+++|||
T Consensus 42 GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvl 98 (162)
T 1ehw_A 42 GDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVW 98 (162)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEE
Confidence 479999999999 999999999999999999999999999999999997
No 52
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=99.40 E-value=8.6e-14 Score=110.77 Aligned_cols=48 Identities=38% Similarity=0.555 Sum_probs=46.0
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|+++|++||.+|++||||++||+||+|||+++|||
T Consensus 20 g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl 76 (150)
T 1nb2_A 20 GEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVW 76 (150)
T ss_dssp HHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEE
Confidence 578899999999 999999999999999999999999999999999996
No 53
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=99.40 E-value=1.6e-13 Score=111.42 Aligned_cols=48 Identities=48% Similarity=0.834 Sum_probs=46.2
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|+++|++||.+|++||||++||+||+|||+++|||
T Consensus 39 GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvl 95 (169)
T 1zs6_A 39 GEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVW 95 (169)
T ss_dssp HHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEE
Confidence 479999999999 999999999999999999999999999999999996
No 54
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=99.40 E-value=1.7e-13 Score=111.76 Aligned_cols=48 Identities=56% Similarity=0.907 Sum_probs=46.2
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|++.|++||++|++||||++||+||+|||+++|||
T Consensus 42 GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvl 98 (172)
T 3l7u_A 42 GEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVW 98 (172)
T ss_dssp HHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEE
Confidence 589999999999 999999999999999999999999999999999997
No 55
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.2e-13 Score=111.30 Aligned_cols=48 Identities=35% Similarity=0.712 Sum_probs=39.2
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|+++|++||.+|++||||++||+||+|||+++|||
T Consensus 31 GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvl 87 (161)
T 3b54_A 31 SQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVW 87 (161)
T ss_dssp HHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEEE
Confidence 578999999999 999999999999999999999999999999999996
No 56
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=99.37 E-value=3.3e-13 Score=110.76 Aligned_cols=48 Identities=40% Similarity=0.800 Sum_probs=46.2
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|+++|++||++|++||||++||+||+|||+++|||
T Consensus 50 GeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGPvvamvl 106 (182)
T 1w7w_A 50 SEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVW 106 (182)
T ss_dssp HHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEE
Confidence 478999999999 999999999999999999999999999999999997
No 57
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=99.37 E-value=8.8e-14 Score=111.53 Aligned_cols=48 Identities=42% Similarity=0.784 Sum_probs=20.1
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+++.+++++|| +|++.|++||++|++||||++||+||+|||+++|||
T Consensus 25 g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvl 81 (155)
T 3r9l_A 25 GEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVW 81 (155)
T ss_dssp HHHHHHHHHHTCEEEEEECC---------------------------CCSCCEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEE
Confidence 588899999999 999999999999999999999999999999999996
No 58
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=99.25 E-value=1.2e-12 Score=108.20 Aligned_cols=48 Identities=25% Similarity=0.437 Sum_probs=46.2
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhhH-----HhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHYS-----DLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y~-----~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
.+|+.+|+++|| +|+++|++||. +|++||||++||+||+|||+++|||
T Consensus 44 G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvvamvl 105 (190)
T 4dz6_A 44 GDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTFVV 105 (190)
T ss_dssp HHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCCCEEEEEE
Confidence 589999999999 99999999999 9999999999999999999999996
No 59
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=99.09 E-value=1.8e-11 Score=101.18 Aligned_cols=48 Identities=31% Similarity=0.377 Sum_probs=45.8
Q ss_pred hhhhhhhhhcCC---------CCHHHHHhhh-------------H--------------------HhcCCCChHHHHHhh
Q psy3715 132 LTTCKLLTEMGI---------PSEELLKQHY-------------S--------------------DLATKPFFPGLVKYM 169 (179)
Q Consensus 132 ~~~~~~~~~~g~---------~s~e~~~~~Y-------------~--------------------~~~~k~f~~~Lv~~M 169 (179)
.+++.+|+++|| +|+++|++|| + +|.+||||++||+||
T Consensus 33 G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~gk~ff~~Lv~~m 112 (195)
T 1xqi_A 33 DEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYM 112 (195)
T ss_dssp HHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhccccchhcCCcchHHHHHHH
Confidence 588999999999 9999999999 8 999999999999999
Q ss_pred hcCCeEEEEC
Q psy3715 170 SSGPVVPMVR 179 (179)
Q Consensus 170 ~sGpvv~mv~ 179 (179)
+|||+++|||
T Consensus 113 tsGPvvamvl 122 (195)
T 1xqi_A 113 TSGPNVVMVL 122 (195)
T ss_dssp TSSCEEEEEE
T ss_pred cCCCEEEEEE
Confidence 9999999996
No 60
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=98.69 E-value=1.2e-08 Score=90.80 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=47.6
Q ss_pred ccchhhhhh-----hhh--hhhhhhhhhhcCC---------CCHHHHHhhhHHhcCCCChHHHHHhhhcCCeEEEEC
Q psy3715 119 FPAERQFYC-----LNN--YLTTCKLLTEMGI---------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 119 ~~ae~~~~~-----~~~--~~~~~~~~~~~g~---------~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv~mv~ 179 (179)
...||-|.. +.. .-+|+.+++++|| +|+++|++||++|+ ++|++||+|||||+|||
T Consensus 233 ~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vl 304 (352)
T 3bh7_B 233 SSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEF 304 (352)
T ss_dssp SCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEE
T ss_pred ccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEE
Confidence 345776653 333 3599999999999 99999999999999 78999999999999997
No 61
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=89.43 E-value=0.5 Score=31.80 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=34.9
Q ss_pred hhhhhhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhcCCe
Q psy3715 128 LNNYLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPV 174 (179)
Q Consensus 128 ~~~~~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpv 174 (179)
-+.+++.+..|++|||-+++.+.+-.....+. -+.-++|+.|||+
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gn--ve~Ave~L~~~~~ 58 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLNGDV 58 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhCCC
Confidence 45678899999999998887766666655554 5677889999885
No 62
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=89.41 E-value=0.61 Score=30.35 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=34.7
Q ss_pred hhhhhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhcCC
Q psy3715 129 NNYLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGP 173 (179)
Q Consensus 129 ~~~~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGp 173 (179)
+.+++.+..|.+|||-+++.+.+-.....+. -+.-++|+-+||
T Consensus 10 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn--~e~A~e~L~~~~ 52 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREANLQALIATGGD--INAAIERLLGSS 52 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHhCc
Confidence 4567889999999998999888877777663 667788888887
No 63
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=87.66 E-value=0.93 Score=29.51 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=36.0
Q ss_pred hhhhhhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhcCCe
Q psy3715 128 LNNYLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPV 174 (179)
Q Consensus 128 ~~~~~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpv 174 (179)
-+.+++.+..|.+|||-+++.+.+-.....+. -+.-++|+.+||+
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn--ve~Ave~L~~~~~ 52 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIATGGD--INAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHHcCC
Confidence 35678889999999999999988887777764 6677888877763
No 64
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=83.08 E-value=2.3 Score=27.00 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=29.2
Q ss_pred hhhhhhhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhcC
Q psy3715 127 CLNNYLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSG 172 (179)
Q Consensus 127 ~~~~~~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sG 172 (179)
|.+.+++.+..|.+|||-+++.+.+-.....+. -+.-++|+-||
T Consensus 3 p~~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gn--v~~Ave~L~~~ 46 (46)
T 2bwb_A 3 PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLNG 46 (46)
T ss_dssp HHHHTHHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHHCC
T ss_pred HhHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHcc
Confidence 346678899999999997777655555544443 34455565554
No 65
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=77.58 E-value=3.1 Score=26.52 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=31.0
Q ss_pred hhhhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhcC
Q psy3715 130 NYLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSG 172 (179)
Q Consensus 130 ~~~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sG 172 (179)
..++.+..|.+||| +++.+.+-.....+. -+.-++|+.+|
T Consensus 7 ~~~~~i~~L~~MGF-~~~~a~~AL~~~~~n--~e~A~e~L~~g 46 (49)
T 1ify_A 7 EYETMLTEIMSMGY-ERERVVAALRASYNN--PHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHTTC-CHHHHHHHHHTTTSC--SHHHHHHHHHC
T ss_pred cCHHHHHHHHHcCC-CHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence 35678899999999 888888877766553 56778888776
No 66
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=77.10 E-value=3.3 Score=29.17 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=33.1
Q ss_pred hhhhhhhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhcCC
Q psy3715 127 CLNNYLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGP 173 (179)
Q Consensus 127 ~~~~~~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGp 173 (179)
+.+.+++.+..|++|||-+++.+.+-.....+. -+.-|+|+-+||
T Consensus 25 pe~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gn--ve~Ave~L~~~~ 69 (74)
T 1vej_A 25 TEGRYQQELEELKALGFANRDANLQALVATDGD--IHAAIEMLLGAS 69 (74)
T ss_dssp TTTTSHHHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhCC
Confidence 345678899999999998888766666555544 556778887775
No 67
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=70.59 E-value=7 Score=23.79 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=25.9
Q ss_pred hhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhcC
Q psy3715 132 LTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSG 172 (179)
Q Consensus 132 ~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sG 172 (179)
++.+..|.+||| +++.+.+-+....+. -+.-++|+-+|
T Consensus 5 e~~i~~L~~MGF-~~~~a~~AL~~~~~n--~e~A~~~L~~~ 42 (43)
T 2g3q_A 5 SLAVEELSGMGF-TEEEAHNALEKCNWD--LEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHTTTS-CHHHHHHHHHHHTSC--HHHHHHHHHTC
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHhCcC--HHHHHHHHHcC
Confidence 467899999999 567777766665442 45556666554
No 68
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=70.48 E-value=5 Score=30.16 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=35.2
Q ss_pred hhhhhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhcCCe
Q psy3715 129 NNYLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPV 174 (179)
Q Consensus 129 ~~~~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpv 174 (179)
+.+++.+..|++|||.+++.+.+-.....|. -+.-|+++.|||.
T Consensus 64 ~~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gd--ve~AVe~L~~~~~ 107 (108)
T 2cwb_A 64 SQWQPQLQQLRDMGIQDDELSLRALQATGGD--IQAALELIFAGGA 107 (108)
T ss_dssp CTTHHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHTSC
T ss_pred cchHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHhcCC
Confidence 4567888999999998888887777776665 6678889888873
No 69
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=68.26 E-value=4 Score=26.75 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=28.1
Q ss_pred hhhhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhcCC
Q psy3715 130 NYLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGP 173 (179)
Q Consensus 130 ~~~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGp 173 (179)
.|++.+..|++|||-.++.+.+-.....+. -+.-++++-++|
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gd--v~~Ave~L~~~~ 49 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATGGD--VDAAVEKLRQSS 49 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 467788999999998877655555555443 344555555544
No 70
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=62.26 E-value=7.9 Score=26.04 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=26.8
Q ss_pred hhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhcC
Q psy3715 132 LTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSG 172 (179)
Q Consensus 132 ~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sG 172 (179)
++.+..|.+||| +++.|.+-+....+. .+.-++|+.++
T Consensus 10 ~~~I~~L~~MGF-~~~~a~~AL~~~~~n--ve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGF-SKEASRQALMDNGNN--LEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTC-CHHHHHHHHHHTTSC--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHhCCC--HHHHHHHHHHC
Confidence 577899999999 677777777766553 55555665543
No 71
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=62.06 E-value=11 Score=26.17 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=30.6
Q ss_pred hhhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhcCC
Q psy3715 131 YLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGP 173 (179)
Q Consensus 131 ~~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGp 173 (179)
.++.+..|.+||| +++.+.+-+....+. .+.-++|+.+|+
T Consensus 29 ~ee~I~~L~eMGF-~r~~a~~AL~~~~~n--ve~Ave~Ll~~~ 68 (73)
T 1vg5_A 29 SEEQIQKLVAMGF-DRTQVEVALAAADDD--LTVAVEILMSQS 68 (73)
T ss_dssp CHHHHHHHHTTTC-CHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred cHHHHHHHHHcCC-CHHHHHHHHHHhCCC--HHHHHHHHHHCC
Confidence 4678899999998 788888777766653 667778887764
No 72
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=60.56 E-value=6.5 Score=29.15 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=32.7
Q ss_pred hhhhhhhhcCC-CCHHHHHhhhHHh------cCCCChHHHHHhhhcCCe
Q psy3715 133 TTCKLLTEMGI-PSEELLKQHYSDL------ATKPFFPGLVKYMSSGPV 174 (179)
Q Consensus 133 ~~~~~~~~~g~-~s~e~~~~~Y~~~------~~k~f~~~Lv~~M~sGpv 174 (179)
++...++..|. +|++.+.+..... .|+-=|...++.|.+||.
T Consensus 106 el~~~l~~~g~~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~~p~ 154 (159)
T 3i5g_C 106 EIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154 (159)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHHCSC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHCCCC
Confidence 55566777788 8998888887643 356679999999999995
No 73
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=57.88 E-value=8.7 Score=22.55 Aligned_cols=27 Identities=15% Similarity=0.051 Sum_probs=20.8
Q ss_pred hhhhhhhhhhcCCCCHHHHHhhhHHhcC
Q psy3715 131 YLTTCKLLTEMGIPSEELLKQHYSDLAT 158 (179)
Q Consensus 131 ~~~~~~~~~~~g~~s~e~~~~~Y~~~~~ 158 (179)
.++.+..|.+||| +++.+++.+....+
T Consensus 4 ~~~~i~~L~~mGf-~~~~a~~AL~~~~~ 30 (40)
T 1z96_A 4 LNSKIAQLVSMGF-DPLEAAQALDAANG 30 (40)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHcCC
Confidence 4567899999999 67888877776643
No 74
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=57.88 E-value=12 Score=25.74 Aligned_cols=40 Identities=8% Similarity=0.187 Sum_probs=30.7
Q ss_pred hhhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhcCC
Q psy3715 131 YLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGP 173 (179)
Q Consensus 131 ~~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGp 173 (179)
-++.+..|.+||| +++.|++-+....+. .+.-++|+.++|
T Consensus 29 ~~~~v~~L~~MGF-~~~~a~~AL~~t~~n--ve~Ave~L~~~~ 68 (73)
T 1wiv_A 29 DQSSVDTLLSFGF-AEDVARKALKASGGD--IEKATDWVFNNS 68 (73)
T ss_dssp CHHHHHHHHHHTC-CHHHHHHHHHHTTSC--HHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCC-CHHHHHHHHHHhCCC--HHHHHHHHHhCC
Confidence 3567899999999 788888887776653 666778877765
No 75
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=53.08 E-value=21 Score=24.66 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=28.7
Q ss_pred hhhhhhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhcCC
Q psy3715 128 LNNYLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGP 173 (179)
Q Consensus 128 ~~~~~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGp 173 (179)
-+.|+..+..|++|||-.++...+--....+- -+.-|+|+-|+|
T Consensus 16 e~~y~~ql~qL~~MGF~d~~an~~AL~at~Gn--ve~Ave~L~~~~ 59 (67)
T 2dna_A 16 EVRFSKEMECLQAMGFVNYNANLQALIATDGD--TNAAIYKLKSSQ 59 (67)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 45678899999999997777644443333332 456666666554
No 76
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=50.86 E-value=9.5 Score=25.48 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=22.5
Q ss_pred hhhhhhhhhhhhcCCCCHHHHHhhhHHhcC
Q psy3715 129 NNYLTTCKLLTEMGIPSEELLKQHYSDLAT 158 (179)
Q Consensus 129 ~~~~~~~~~~~~~g~~s~e~~~~~Y~~~~~ 158 (179)
|.+...+..|.+|||..++.-.+.-..+.+
T Consensus 7 e~~a~~L~~L~eMGF~D~~~N~~aL~~~~g 36 (54)
T 2cp8_A 7 GQTAALMAHLFEMGFCDRQLNLRLLKKHNY 36 (54)
T ss_dssp TTHHHHHHHHHHHTCCCHHHHHHHHTTTTT
T ss_pred HhhHHHHHHHHHcCCCcHHHHHHHHHHcCC
Confidence 456678999999999888776666555544
No 77
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=50.46 E-value=18 Score=22.79 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=19.5
Q ss_pred hhhhhhhhhcCCCCHHHHHhhhHHhcC
Q psy3715 132 LTTCKLLTEMGIPSEELLKQHYSDLAT 158 (179)
Q Consensus 132 ~~~~~~~~~~g~~s~e~~~~~Y~~~~~ 158 (179)
++.+.+|.+||| +++.+.+-|..+.+
T Consensus 5 ~eaI~rL~~mGF-~~~~a~~Al~a~~~ 30 (47)
T 1dv0_A 5 KEAIERLKALGF-PESLVIQAYFACEK 30 (47)
T ss_dssp HHHHTTTTTTTC-CHHHHHHHHTTTTS
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHcCC
Confidence 467899999999 66777777766653
No 78
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.94 E-value=13 Score=24.60 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=24.8
Q ss_pred hhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhc
Q psy3715 132 LTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSS 171 (179)
Q Consensus 132 ~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~s 171 (179)
++.+..|.+||| +++.+++-.....+. -+.-++|+.+
T Consensus 10 ~~~v~~L~~MGF-~~~~a~~AL~~t~~n--ve~A~e~L~~ 46 (63)
T 2dak_A 10 EDCVTTIVSMGF-SRDQALKALRATNNS--LERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHHHTC-CHHHHHHHHHHTTSC--SHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHcCCC--HHHHHHHHHh
Confidence 577899999999 567777666665543 4445555443
No 79
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=46.82 E-value=0.77 Score=29.48 Aligned_cols=17 Identities=24% Similarity=0.600 Sum_probs=14.3
Q ss_pred HHHHHhhhcCCeEEEEC
Q psy3715 163 PGLVKYMSSGPVVPMVR 179 (179)
Q Consensus 163 ~~Lv~~M~sGpvv~mv~ 179 (179)
.++.+|+++.||++++|
T Consensus 2 ~~f~kyLstAPVla~~w 18 (41)
T 1jb0_J 2 KHFLTYLSTAPVLAAIW 18 (41)
T ss_dssp HHHHHHTTBHHHHHHHH
T ss_pred chHHHHHhhhhHHHHHH
Confidence 35789999999998876
No 80
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.95 E-value=27 Score=21.56 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=26.3
Q ss_pred hhhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhcCC
Q psy3715 131 YLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGP 173 (179)
Q Consensus 131 ~~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGp 173 (179)
.++.+..|.+|||.. +.+++-+... + =-+.-++|+.+.|
T Consensus 9 ~~~~v~~L~~MGF~~-~~a~~AL~~~-~--n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 9 NQQQLQQLMDMGFTR-EHAMEALLNT-S--TMEQATEYLLTHP 47 (47)
T ss_dssp CHHHHHHHHHHHCCH-HHHHHHHHHS-C--SHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcCCCH-HHHHHHHHHc-C--CHHHHHHHHHcCC
Confidence 457788999999954 6666655555 3 2666677776654
No 81
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.28 E-value=26 Score=25.02 Aligned_cols=37 Identities=8% Similarity=0.067 Sum_probs=27.9
Q ss_pred hhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhc
Q psy3715 132 LTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSS 171 (179)
Q Consensus 132 ~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~s 171 (179)
++.+..|.+||| +++.|++-.....+. -+.-++|+-+
T Consensus 30 ee~I~~Lv~MGF-~~~~A~~AL~~t~gd--ve~A~e~L~s 66 (83)
T 1veg_A 30 QESINQLVYMGF-DTVVAEAALRVFGGN--VQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHHHHSC-CHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHcCCC--HHHHHHHHHh
Confidence 577899999999 788888877776665 5556666655
No 82
>2pd1_A Hypothetical protein; unknown function, NE2512 protein, structural genomics, APC72 2, protein structure initiative; 1.86A {Nitrosomonas europaea} SCOP: d.58.4.11
Probab=37.65 E-value=5.6 Score=27.23 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=34.4
Q ss_pred CCCCCceeeecccccchhhhhhhhhhhhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhcCCeE
Q psy3715 106 TSECPLFHIDYELFPAERQFYCLNNYLTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGPVV 175 (179)
Q Consensus 106 ~A~pGTIRgdF~~~~ae~~~~~~~~~~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGpvv 175 (179)
.++||.|+-+..++ +...|..++.|+ |++-.+.|-..-.-+.|...+-+++.+.|.+
T Consensus 34 ~~epG~l~~~~~~~-~p~~~~~~E~w~------------~~~a~~~H~~s~~~~~~~~~~~~ll~~~~~i 90 (104)
T 2pd1_A 34 NAESGTTAWFALKF-GPSTFGVFDAFA------------DEAGRQAHLNGQIAAALMANAATLLSSPPNI 90 (104)
T ss_dssp HTCTTEEEEEEEEC-SSSEEEEEEEES------------SHHHHHHHHTSHHHHHHHHHHHHHBSSCCEE
T ss_pred hCCCCcEEEEEEec-CCCEEEEEEEEC------------CHHHHHHHhCCHHHHHHHHHHHHHhcCCcce
Confidence 46899999888877 666777788886 5554444432222233444454555555544
No 83
>2wsc_J PSAJ, PSI-J, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_J* 2wsf_J* 2o01_J* 3lw5_J*
Probab=37.19 E-value=1 Score=29.30 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=13.0
Q ss_pred HHHhhhcCCeEEEEC
Q psy3715 165 LVKYMSSGPVVPMVR 179 (179)
Q Consensus 165 Lv~~M~sGpvv~mv~ 179 (179)
+.+|+++.||++++|
T Consensus 4 f~kyLStAPVla~~w 18 (44)
T 2wsc_J 4 FKTYLSVAPVLSTLW 18 (44)
T ss_dssp SSCCCCCCTTSGGGT
T ss_pred HHHHHhhhhHHHHHH
Confidence 468999999999887
No 84
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.22 E-value=24 Score=23.55 Aligned_cols=46 Identities=4% Similarity=-0.008 Sum_probs=36.6
Q ss_pred CCCCceeeecccccchh------hhhh----hhhhhhhhhhhhhcCCCCHHHHHhhhHH
Q psy3715 107 SECPLFHIDYELFPAER------QFYC----LNNYLTTCKLLTEMGIPSEELLKQHYSD 155 (179)
Q Consensus 107 A~pGTIRgdF~~~~ae~------~~~~----~~~~~~~~~~~~~~g~~s~e~~~~~Y~~ 155 (179)
+.|++.++.|+.+++++ .++. .++|..|...+--+ |....+++|..
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~R---t~~qcr~r~~~ 57 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNR---TAKQVASQVQK 57 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSS---CHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCC---CHHHHHHHHHH
Confidence 56889999999888887 3332 38899999988777 99999999843
No 85
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=35.18 E-value=25 Score=24.35 Aligned_cols=58 Identities=7% Similarity=0.118 Sum_probs=40.7
Q ss_pred cCCCCCCC-CCCceeeecccccchh------hhhhhhhhhhhhhhhhhcCCCCHHHHHhhhHHh-cCCCCh
Q psy3715 100 GHLNLETS-ECPLFHIDYELFPAER------QFYCLNNYLTTCKLLTEMGIPSEELLKQHYSDL-ATKPFF 162 (179)
Q Consensus 100 G~TnP~~A-~pGTIRgdF~~~~ae~------~~~~~~~~~~~~~~~~~~g~~s~e~~~~~Y~~~-~~k~f~ 162 (179)
|...+.++ .....++.+..+++++ .|+ ++|.+|-+.+--+ |.+..++||..+ .+.+|.
T Consensus 4 g~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G--~~W~~IA~~v~~R---T~~qcr~r~~~~~i~d~~~ 69 (79)
T 2yus_A 4 GSSGTLAKSKGASAGREWTEQETLLLLEALEMYK--DDWNKVSEHVGSR---TQDECILHFLRLPIEDPYL 69 (79)
T ss_dssp SSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSS--SCHHHHHHHHSSC---CHHHHHHHHTTSCCCCSSC
T ss_pred cccCccCCccccccCCCcCHHHHHHHHHHHHHhC--CCHHHHHHHcCCC---CHHHHHHHHHHhccccccc
Confidence 33444433 3556678888877776 333 7889998888766 999999999988 444444
No 86
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.88 E-value=47 Score=22.10 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=26.2
Q ss_pred hhhhhhhhhcCCCCHHHHHhhhHHhcCCCChHHHHHhhhcCC
Q psy3715 132 LTTCKLLTEMGIPSEELLKQHYSDLATKPFFPGLVKYMSSGP 173 (179)
Q Consensus 132 ~~~~~~~~~~g~~s~e~~~~~Y~~~~~k~f~~~Lv~~M~sGp 173 (179)
++.+..|.+||| +++.+++-+....++ =-+.-++|+.+++
T Consensus 20 e~~i~~L~~MGF-~~~~a~~AL~~t~~~-nve~A~ewL~~~~ 59 (64)
T 2cpw_A 20 GSALDVLLSMGF-PRARAQKALASTGGR-SVQTACDWLFSHS 59 (64)
T ss_dssp CCHHHHHHHHTC-CHHHHHHHHHHTTTS-CHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHcCCC-CHHHHHHHHHhCC
Confidence 467889999999 556676666665542 1445566665554
No 87
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=32.71 E-value=33 Score=22.08 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=34.5
Q ss_pred CCCceeeecccccchh-----hhhhhhhhhhhhhhhhhcCCCCHHHHHhhhHHh
Q psy3715 108 ECPLFHIDYELFPAER-----QFYCLNNYLTTCKLLTEMGIPSEELLKQHYSDL 156 (179)
Q Consensus 108 ~pGTIRgdF~~~~ae~-----~~~~~~~~~~~~~~~~~~g~~s~e~~~~~Y~~~ 156 (179)
-|+..|+.|+.+++++ +-|-.++|..|-+.+.-+ |....+++|..+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~R---t~~qcr~r~~~~ 53 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTK---TKEECEKHYMKY 53 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTS---CHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCC---CHHHHHHHHHHH
Confidence 3567788888888877 222346788888888766 999999998754
No 88
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.86 E-value=60 Score=21.51 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=16.0
Q ss_pred hhhhhhhhhcCCCCHHHHHhhhHHh
Q psy3715 132 LTTCKLLTEMGIPSEELLKQHYSDL 156 (179)
Q Consensus 132 ~~~~~~~~~~g~~s~e~~~~~Y~~~ 156 (179)
++.+..|.+|||. ++.+++-+...
T Consensus 10 ~~~v~~L~~MGF~-~~~a~~AL~~t 33 (64)
T 1whc_A 10 LTALESLIEMGFP-RGRAEKALALT 33 (64)
T ss_dssp CCHHHHHHTTTCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHh
Confidence 4677889999994 45555555444
No 89
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=25.02 E-value=21 Score=24.89 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=22.9
Q ss_pred hhhhhhhhhhhhhcCCCCHHHHHhhhHHhc
Q psy3715 128 LNNYLTTCKLLTEMGIPSEELLKQHYSDLA 157 (179)
Q Consensus 128 ~~~~~~~~~~~~~~g~~s~e~~~~~Y~~~~ 157 (179)
+.+|+++-..+--+ |.+...+||.++.
T Consensus 31 p~rWe~IA~~V~gK---T~eE~~~hY~~l~ 57 (73)
T 1wgx_A 31 PGFWSEVAAAVGSR---SPEECQRKYMENP 57 (73)
T ss_dssp SSHHHHHHHHTTTS---CHHHHHHHHHHSS
T ss_pred ccHHHHHHHHcCCC---CHHHHHHHHHHHH
Confidence 46788888888777 9999999999983
No 90
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.01 E-value=51 Score=21.98 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=10.8
Q ss_pred hhhhhhhhhcCCCC
Q psy3715 132 LTTCKLLTEMGIPS 145 (179)
Q Consensus 132 ~~~~~~~~~~g~~s 145 (179)
++.+..|.+|||..
T Consensus 10 e~~v~~L~~MGF~~ 23 (64)
T 2crn_A 10 PSLLEPLLAMGFPV 23 (64)
T ss_dssp CSSHHHHHHTSCCH
T ss_pred HHHHHHHHHcCCCH
Confidence 45678899999944
No 91
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=21.51 E-value=79 Score=21.91 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=31.1
Q ss_pred hhhhhhhhhcCC-CCHHHHHhhhH------HhcCCCChHHHHHhhhcCCe
Q psy3715 132 LTTCKLLTEMGI-PSEELLKQHYS------DLATKPFFPGLVKYMSSGPV 174 (179)
Q Consensus 132 ~~~~~~~~~~g~-~s~e~~~~~Y~------~~~~k~f~~~Lv~~M~sGpv 174 (179)
+++...+++.|. ++++.+++... +..|+-=|+..++.|.++|.
T Consensus 105 ~El~~~l~~~g~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~~~ 154 (159)
T 2ovk_C 105 AEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154 (159)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCTTCCEEHHHHHHHHHHCSS
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCCCcEeHHHHHHHHhcCCC
Confidence 355566667776 78888777766 34555568999999999984
No 92
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=21.05 E-value=2.1e+02 Score=27.14 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=25.8
Q ss_pred eEEEEEcCcccc--CCchHHHHHHHHHcCcEEEEe
Q psy3715 23 RTFLMIKPDGVQ--RGLVGNIIKRFEDKGFKLVAM 55 (179)
Q Consensus 23 rTl~~IKPD~~~--~g~~g~Ii~~~~~~G~kiv~~ 55 (179)
++.+++.|-++. ...+.++++.++..||.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~i~~L~~~Le~~g~~V~~a 36 (715)
T 3n75_A 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYP 36 (715)
T ss_dssp CEEEEECCCSCHHHHHHHHHHHHHHHHTTCEEECC
T ss_pred ceEEEccCCCcccchHHHHHHHHHHHHCCcEEEEe
Confidence 467888888775 224678889999999999875
No 93
>2gff_A LSRG protein; dimeric alpha+beta barrel ferredoxin fold, sugar binding protein; 1.75A {Yersinia pestis} PDB: 3qmq_A
Probab=20.13 E-value=14 Score=25.46 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=20.0
Q ss_pred CCCCCceeeecccccc-hhhhhhhhhhh
Q psy3715 106 TSECPLFHIDYELFPA-ERQFYCLNNYL 132 (179)
Q Consensus 106 ~A~pGTIRgdF~~~~a-e~~~~~~~~~~ 132 (179)
.++||.|+-+..++.+ ...|..++.|+
T Consensus 30 r~epG~l~~~~~~~~~~p~~~~~~E~w~ 57 (106)
T 2gff_A 30 IREAGNLRFDVLRDEHIPTRFYIYEAYT 57 (106)
T ss_dssp HTSTTEEEEEEEEESSCTTEEEEEEEES
T ss_pred hCCCCcEEEEEEEcCCCCCEEEEEEEEC
Confidence 3689999998877643 45677788876
Done!